RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7294
(123 letters)
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 47.1 bits (111), Expect = 5e-08
Identities = 15/90 (16%), Positives = 34/90 (37%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
G L+ +G Y +G ++++ ++K DLT +EA + +
Sbjct: 107 GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWND 166
Query: 93 VLSYPKFTVKVLDRTGTVNVLQDLKYSDFK 122
+ S V V++ L++ + +
Sbjct: 167 LGSGSNVDVCVMEIGKDAEYLRNYLTPNVR 196
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 46.7 bits (110), Expect = 7e-08
Identities = 14/77 (18%), Positives = 34/77 (44%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
G LY P+G ++PY +G ++ + ++PD+ +EA +++ + +
Sbjct: 107 GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFND 166
Query: 93 VLSYPKFTVKVLDRTGT 109
+ S + V+ +
Sbjct: 167 LGSGSNIDLCVISKNKL 183
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 46.0 bits (108), Expect = 1e-07
Identities = 25/77 (32%), Positives = 48/77 (62%)
Query: 32 FGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91
G LY D + + P+A G FLT S++D+YY P ++ + A +L++C+ +++R
Sbjct: 111 EGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKR 170
Query: 92 TVLSYPKFTVKVLDRTG 108
+L+ P F+V+++D+ G
Sbjct: 171 FILNLPTFSVRIIDKNG 187
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 45.4 bits (107), Expect = 3e-07
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDK---YYKPDLTVQEAYSVLKQCVHHMK 89
G LY +P G A G + ++K ++ L+ +EA + ++
Sbjct: 141 GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAH 200
Query: 90 RRTVLSYPKFTVKVLDRTGT 109
+ + + T
Sbjct: 201 EDNKEKDFELEISWCSLSET 220
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 44.7 bits (105), Expect = 3e-07
Identities = 18/83 (21%), Positives = 33/83 (39%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
G LY D G + +G ++D+ Y DL V++AY + ++ ++ R
Sbjct: 108 GPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRD 167
Query: 93 VLSYPKFTVKVLDRTGTVNVLQD 115
S + + G + V D
Sbjct: 168 AYSGGAVNLYHVREDGWIRVSSD 190
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 42.1 bits (98), Expect = 3e-06
Identities = 17/81 (20%), Positives = 30/81 (37%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
++ D G +E YA G +++ Y +TV E ++ + + K+R
Sbjct: 107 APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRD 166
Query: 93 VLSYPKFTVKVLDRTGTVNVL 113
S V V+ R L
Sbjct: 167 SASGGMIDVAVITRKDGYVQL 187
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 41.3 bits (96), Expect = 5e-06
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 33 GVTLYKGDPYGFMLEV-PYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91
G ++Y DP G +E G +++ + P++ V EA + + ++ +R
Sbjct: 108 GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKR 167
Query: 92 TVLSYPKFTVKVLDRTG 108
S V +
Sbjct: 168 DSASGDGIDVVKITEDE 184
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 40.9 bits (95), Expect = 8e-06
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 7/87 (8%)
Query: 28 DCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87
D G ++YK DP G+ + G + ++ ++K ++ V
Sbjct: 138 DEEL-GPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEF 196
Query: 88 MKR------RTVLSYPKFTVKVLDRTG 108
T S V V +
Sbjct: 197 AITHMIDALGTEFSKNDLEVGVATKDK 223
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 40.1 bits (93), Expect = 1e-05
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 36 LYKGDPYGFMLEVPYAYIGING-FLTASLVDKYYK-PDLTVQEAYSVLKQCVHHMKRRTV 93
L D G E P G L + K P L+ EA ++++C+ + R
Sbjct: 122 LGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDA 181
Query: 94 LSYPKFTVKVLDRTGT 109
SY +F + G
Sbjct: 182 RSYNRFQTATVTEKGV 197
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 40.4 bits (94), Expect = 1e-05
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 36 LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVH 86
LY DP G IG + ++K ++T ++ + + ++
Sbjct: 148 LYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIY 198
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 40.1 bits (93), Expect = 2e-05
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDK-YYKPDLTVQEAYSVLKQCVHHMKRR 91
G LY+ DP G IG N S++ + Y + ++T++ A ++ + ++
Sbjct: 143 GFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDV 202
Query: 92 TVLSYPKFTVKVLDRTGTVNVLQDLKYSD 120
+ LS K + L R V++ LK +
Sbjct: 203 SKLSAEKVEIATLTRENGKTVIRVLKQKE 231
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 39.7 bits (92), Expect = 3e-05
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 28 DCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87
D LY +P G +G N +L+ YK D+ V +A + + +
Sbjct: 140 DDRYGYQ-LYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSK 198
Query: 88 MKRRTVLSYPKFTVKVLDRTGT 109
+ L+Y + + +
Sbjct: 199 TTDSSALTYDRLEFATIRKGAN 220
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 37.7 bits (87), Expect = 1e-04
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
G L+ DP G ++ IG S + + Y +T++EA + +
Sbjct: 143 GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEK 202
Query: 93 VLSYPKFTVKVLDRTGTVNVL 113
L+ + + ++
Sbjct: 203 -LNATNIELATVQPGQNFHMF 222
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 37.3 bits (86), Expect = 2e-04
Identities = 7/86 (8%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK--PDLTVQEAYSVLKQCVHH-MK 89
G +++ P + IG + ++++ + + E + + +
Sbjct: 138 GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLP 197
Query: 90 RRTVLSYPKFTVKVLDRTGTVNVLQD 115
L+ ++ ++ + + D
Sbjct: 198 AEQDLTTKNVSIGIVGKDLEFTIYDD 223
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 36.6 bits (84), Expect = 2e-04
Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 36 LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLS 95
L+ +P G IG + + + LT++EA ++ + + + L
Sbjct: 147 LFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEK-LD 205
Query: 96 YPKFTVKVLDRTGTVNVLQD 115
+ + + + +
Sbjct: 206 ENNAQLSCITKQDGFKIYDN 225
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 35.8 bits (82), Expect = 4e-04
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
G L+ DP G + E IG S +++ YK +L +EA ++ + +
Sbjct: 133 GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEG 192
Query: 93 VLSYPKFTVKVLDRTGTVNVLQD 115
+ + +
Sbjct: 193 -EELKAPEIASITVGNKYRIYDQ 214
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 34.7 bits (79), Expect = 0.001
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87
G +LY+ DP G IG + ++K + +L +++A + +
Sbjct: 144 GFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKE 198
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 33.7 bits (76), Expect = 0.003
Identities = 10/117 (8%), Positives = 29/117 (24%)
Query: 1 MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLT 60
+L + + L K + + ++ +
Sbjct: 95 ILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVG 154
Query: 61 ASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLK 117
+ L++ A ++K R V + + ++ + G L+
Sbjct: 155 FKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLR 211
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 77
Score = 29.4 bits (66), Expect = 0.029
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 66 KYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLD 105
K + P +Q A + LK+ V + + T ++ K T K+L
Sbjct: 28 KPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKILT 67
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 70
Score = 27.4 bits (61), Expect = 0.13
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 66 KYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLD 105
K ++PD T+++A +K+ + + + T + K T K++
Sbjct: 26 KEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKIVK 65
>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme,
N-terminal domain N {Escherichia coli [TaxId: 562]}
Length = 110
Score = 26.5 bits (58), Expect = 0.65
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLV 64
G K DPY F ++ TASL+
Sbjct: 81 GNLRLKSDPYAFEAQMRPE--------TASLI 104
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase
carboxyl transferase subunit beta, AccD {Escherichia
coli [TaxId: 562]}
Length = 263
Score = 24.8 bits (53), Expect = 3.1
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 68 YKPDLTVQEAYSVLKQCVHHMK 89
Y+ +L + V +C HHM+
Sbjct: 13 YRAEL--ERNLEVCPKCDHHMR 32
>d2jdqd1 d.361.1.1 (D:688-756) Polymerase basic protein 2, BP2
{Influenza A virus [TaxId: 11320]}
Length = 69
Score = 23.8 bits (51), Expect = 3.3
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 55 INGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ 114
+ GFL D+ Y P L++ E ++ K ++ VL V V+ R ++L
Sbjct: 4 LRGFLILGKEDRRYGPALSINELSNLAKG-----EKANVLIGQGDVVLVMKRKRDSSILT 58
Query: 115 DLK 117
D +
Sbjct: 59 DSQ 61
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 24.6 bits (53), Expect = 3.5
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 53 IGINGF------LTASLVDKYYKPDLTV--QEAYSVLKQCVHHMKRRTVLSYPKFTVKVL 104
+ ING+ + + + D+ + K H + T TV V
Sbjct: 4 VAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVN 63
Query: 105 DRTGTVN 111
VN
Sbjct: 64 GSYMVVN 70
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 24.4 bits (52), Expect = 4.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 85 VHHMKRRTVLSYPKFTVKVLDRTG 108
V MKR T +++PK +L
Sbjct: 72 VVLMKRGTAITFPKDINMILSMMD 95
>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 23.7 bits (51), Expect = 4.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 31 TFGVTLYKGDPYGFMLE 47
+ VTL P+GF L+
Sbjct: 2 AYSVTLTGPGPWGFRLQ 18
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 23.9 bits (51), Expect = 5.9
Identities = 2/14 (14%), Positives = 5/14 (35%)
Query: 85 VHHMKRRTVLSYPK 98
++R T +
Sbjct: 59 GRVIRRNTQIISEI 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 453,821
Number of extensions: 18988
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 30
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)