Query psy7295
Match_columns 165
No_of_seqs 147 out of 1486
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 23:03:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 100.0 1.9E-32 6.5E-37 236.0 15.5 141 1-164 326-467 (503)
2 3ni2_A 4-coumarate:COA ligase; 100.0 4.2E-32 1.4E-36 235.3 15.8 141 1-164 361-502 (536)
3 2d1s_A Luciferase, luciferin 4 100.0 1.3E-31 4.6E-36 233.1 12.9 141 1-164 368-509 (548)
4 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.8E-31 9.4E-36 230.5 14.3 137 3-163 360-497 (539)
5 3nyq_A Malonyl-COA ligase; A/B 100.0 3.4E-31 1.2E-35 228.5 14.5 141 1-164 330-475 (505)
6 3g7s_A Long-chain-fatty-acid-- 100.0 1.9E-31 6.4E-36 231.8 12.5 141 1-164 362-509 (549)
7 1t5h_X 4-chlorobenzoyl COA lig 100.0 9E-31 3.1E-35 225.2 15.1 140 1-164 327-471 (504)
8 3rix_A Luciferase, luciferin 4 100.0 7.9E-32 2.7E-36 234.2 8.6 141 1-164 366-507 (550)
9 1amu_A GRSA, gramicidin synthe 100.0 9.8E-31 3.3E-35 228.6 14.8 139 1-164 352-496 (563)
10 3etc_A AMP-binding protein; ad 100.0 1.2E-30 4E-35 229.0 15.3 140 1-164 399-546 (580)
11 4gr5_A Non-ribosomal peptide s 100.0 1.3E-31 4.6E-36 233.8 8.1 141 1-164 389-538 (570)
12 1v25_A Long-chain-fatty-acid-C 100.0 8.6E-31 2.9E-35 227.5 11.5 139 1-163 361-502 (541)
13 3r44_A Fatty acyl COA syntheta 100.0 2.1E-30 7E-35 224.0 13.5 138 1-164 343-480 (517)
14 3ivr_A Putative long-chain-fat 100.0 3.2E-31 1.1E-35 228.1 7.9 140 1-164 327-468 (509)
15 3o83_A Peptide arylation enzym 100.0 4.5E-31 1.5E-35 229.4 8.4 136 2-161 368-503 (544)
16 3rg2_A Enterobactin synthase c 100.0 5.1E-30 1.8E-34 225.9 15.3 135 2-161 363-497 (617)
17 1pg4_A Acetyl-COA synthetase; 100.0 3E-30 1E-34 229.1 13.8 141 1-164 441-588 (652)
18 3e7w_A D-alanine--poly(phospho 100.0 1.2E-29 3.9E-34 218.6 16.2 139 1-163 324-469 (511)
19 3l8c_A D-alanine--poly(phospho 100.0 2.8E-30 9.5E-35 222.5 10.7 140 1-163 328-478 (521)
20 3fce_A D-alanine--poly(phospho 100.0 1.3E-29 4.6E-34 218.0 14.0 139 1-163 325-470 (512)
21 3c5e_A Acyl-coenzyme A synthet 100.0 6.2E-30 2.1E-34 223.8 11.8 140 1-164 380-529 (570)
22 3tsy_A Fusion protein 4-coumar 100.0 3.1E-30 1E-34 237.5 8.9 141 1-164 408-549 (979)
23 2v7b_A Benzoate-coenzyme A lig 100.0 2.8E-29 9.4E-34 216.9 12.6 139 1-164 358-499 (529)
24 2vsq_A Surfactin synthetase su 100.0 1.6E-28 5.4E-33 232.1 15.7 139 1-164 783-927 (1304)
25 1ry2_A Acetyl-coenzyme A synth 100.0 5.8E-29 2E-33 221.5 11.1 141 1-164 448-604 (663)
26 3gqw_A Fatty acid AMP ligase; 99.9 8.4E-28 2.9E-32 208.3 13.3 136 1-163 391-526 (576)
27 4dg8_A PA1221; ANL superfamily 99.9 5.5E-28 1.9E-32 213.9 11.6 119 1-142 339-465 (620)
28 3ipl_A 2-succinylbenzoate--COA 99.9 1.1E-27 3.7E-32 205.4 13.0 132 1-164 333-464 (501)
29 3ite_A SIDN siderophore synthe 99.9 3E-28 1E-32 211.7 7.4 141 1-164 353-509 (562)
30 3kxw_A Saframycin MX1 syntheta 99.9 9.3E-28 3.2E-32 209.1 7.1 135 5-164 382-530 (590)
31 3qov_A Phenylacetate-coenzyme 99.9 7.4E-23 2.5E-27 172.8 11.8 126 2-164 263-402 (436)
32 2y27_A Phenylacetate-coenzyme 99.9 1E-22 3.5E-27 172.0 9.3 126 2-163 268-403 (437)
33 2y4o_A Phenylacetate-coenzyme 99.9 1.3E-22 4.6E-27 171.5 9.0 126 2-163 270-407 (443)
34 4gs5_A Acyl-COA synthetase (AM 99.8 1E-20 3.4E-25 157.2 6.0 125 16-164 193-321 (358)
35 3t5a_A Long-chain-fatty-acid-- 99.7 9.7E-18 3.3E-22 142.2 7.6 68 2-71 401-480 (480)
36 3lax_A Phenylacetate-coenzyme 99.2 1.6E-11 5.4E-16 85.4 6.8 70 70-162 1-73 (109)
37 3gxs_A Phenylacetate-coenzyme 99.2 3E-11 1E-15 84.3 5.8 70 70-163 1-74 (109)
38 3hgu_A EHPF; phenazine, antibi 98.0 2.5E-06 8.6E-11 69.9 3.2 64 1-81 292-368 (369)
39 4eql_A 4-substituted benzoates 97.6 4.3E-05 1.5E-09 67.4 4.8 64 15-95 380-447 (581)
40 4b2g_A GH3-1 auxin conjugating 97.6 4.8E-05 1.6E-09 67.4 4.8 63 15-94 392-458 (609)
41 4epl_A Jasmonic acid-amido syn 97.4 0.00012 4.1E-09 64.5 4.6 63 15-94 387-453 (581)
42 2cvi_A 75AA long hypothetical 35.8 56 0.0019 20.0 4.3 18 85-102 15-32 (83)
43 4gs5_A Acyl-COA synthetase (AM 33.5 10 0.00034 30.4 0.3 39 13-53 207-245 (358)
44 2zbc_A 83AA long hypothetical 31.3 67 0.0023 19.3 4.0 18 85-102 15-32 (83)
45 3e8v_A Possible transglutamina 25.5 40 0.0014 21.7 2.1 16 4-19 3-18 (82)
46 2zzt_A Putative uncharacterize 23.0 1.1E+02 0.0036 19.9 4.0 18 85-102 12-29 (107)
47 2b3g_B Cellular tumor antigen 22.1 46 0.0016 16.6 1.5 15 82-96 12-26 (28)
48 1yj7_A ESCJ; mixed alpha/beta, 21.9 69 0.0024 23.2 3.1 19 85-103 92-110 (171)
49 2kke_A Uncharacterized protein 20.2 85 0.0029 17.7 2.5 17 81-97 18-34 (53)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.9e-32 Score=236.01 Aligned_cols=141 Identities=28% Similarity=0.504 Sum_probs=134.1
Q ss_pred CCCcEEEEEC-CCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295 1 MSLNIVKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG 79 (165)
Q Consensus 1 ~pg~~v~vvd-~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~ 79 (165)
+|+++++|+| ++|+++|.|+.|||+|+||+++.|||++|+.|.+.|.++|||+|||++++++||+++|+||.||+||++
T Consensus 326 ~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~ 405 (503)
T 4fuq_A 326 LPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITG 405 (503)
T ss_dssp CTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEET
T ss_pred CCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEEC
Confidence 5799999999 569999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295 80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF 159 (165)
Q Consensus 80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l 159 (165)
|++|+|.|||+.|.+||+|.+++ |++.+++..++.+++++++.++...+.++++++|
T Consensus 406 G~~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l 462 (503)
T 4fuq_A 406 GFNVYPKEIESEIDAMPGVVESA-----------------------VIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGL 462 (503)
T ss_dssp TEEECHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred CEEECHHHHHHHHHhCCCeeEEE-----------------------EEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHH
Confidence 99999999999999999999998 9999999999999999999888888999999999
Q ss_pred Hhhhc
Q psy7295 160 KGKAI 164 (165)
Q Consensus 160 ~~~l~ 164 (165)
+++|.
T Consensus 463 ~~~L~ 467 (503)
T 4fuq_A 463 DGQLA 467 (503)
T ss_dssp BTTBC
T ss_pred Hhhcc
Confidence 88764
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.98 E-value=4.2e-32 Score=235.27 Aligned_cols=141 Identities=35% Similarity=0.525 Sum_probs=134.1
Q ss_pred CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295 1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG 79 (165)
Q Consensus 1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~ 79 (165)
+|+++++|+|++ |++++.|+.|||+|+||+++.|||++|+.|.+.|..+|||+|||++++++||+++|+||.||+||++
T Consensus 361 ~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~ 440 (536)
T 3ni2_A 361 VRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYK 440 (536)
T ss_dssp CSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEET
T ss_pred CCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEEC
Confidence 579999999954 9999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295 80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF 159 (165)
Q Consensus 80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l 159 (165)
|++|+|.|||+.|.+||+|.+++ |++.+++..++.++++++..++...+.++++++|
T Consensus 441 G~~v~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l 497 (536)
T 3ni2_A 441 GFQVAPAELEALLIAHPEISDAA-----------------------VVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYI 497 (536)
T ss_dssp TEEECHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred CEEECHHHHHHHHHhCCCcceEE-----------------------EEeeecCCCCceeEEEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999999998 9999999899999999999888788899999999
Q ss_pred Hhhhc
Q psy7295 160 KGKAI 164 (165)
Q Consensus 160 ~~~l~ 164 (165)
+++|.
T Consensus 498 ~~~l~ 502 (536)
T 3ni2_A 498 SKQVI 502 (536)
T ss_dssp HTTSC
T ss_pred HHhcc
Confidence 98764
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.97 E-value=1.3e-31 Score=233.08 Aligned_cols=141 Identities=33% Similarity=0.494 Sum_probs=133.2
Q ss_pred CCCcEEEEEC-CCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295 1 MSLNIVKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG 79 (165)
Q Consensus 1 ~pg~~v~vvd-~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~ 79 (165)
+|+++++|+| ++|++++.|+.|||+++||+++.|||++|+.|.+.|..+|||+|||++++++||+++|+||.||+||++
T Consensus 368 ~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~ 447 (548)
T 2d1s_A 368 VPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYK 447 (548)
T ss_dssp CTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBT
T ss_pred CCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEEC
Confidence 5789999999 569999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295 80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF 159 (165)
Q Consensus 80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l 159 (165)
|++|+|.|||+.|.+||+|.+++ |++.+++..++.++++|+++++...+.++++++|
T Consensus 448 G~~v~p~eIE~~l~~~p~V~~a~-----------------------V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~ 504 (548)
T 2d1s_A 448 GYQVPPAELESVLLQHPSIFDAG-----------------------VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYV 504 (548)
T ss_dssp TCCBCHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred CEEECHHHHHHHHHhCCCccEEE-----------------------EEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHH
Confidence 99999999999999999999998 9999998889999999998877677889999999
Q ss_pred Hhhhc
Q psy7295 160 KGKAI 164 (165)
Q Consensus 160 ~~~l~ 164 (165)
+++|.
T Consensus 505 ~~~l~ 509 (548)
T 2d1s_A 505 ASQVS 509 (548)
T ss_dssp HTTSC
T ss_pred HHhcc
Confidence 98764
No 4
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.97 E-value=2.8e-31 Score=230.48 Aligned_cols=137 Identities=33% Similarity=0.528 Sum_probs=128.6
Q ss_pred CcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEE
Q psy7295 3 LNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGEN 82 (165)
Q Consensus 3 g~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~ 82 (165)
+.+++|+|++|++++.|+.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++++||+++|+||.||+||++|++
T Consensus 360 ~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~ 439 (539)
T 1mdb_A 360 YDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEK 439 (539)
T ss_dssp TCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCE
T ss_pred CceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEE
Confidence 35899999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhh
Q psy7295 83 IYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162 (165)
Q Consensus 83 v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 162 (165)
|+|.|||+.|.+||+|.+++ |++.+++..++.+++++++.. ...+.++++++|+++
T Consensus 440 v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~l~~~ 495 (539)
T 1mdb_A 440 VAAEEVENHLLAHPAVHDAA-----------------------MVSMPDQFLGERSCVFIIPRD-EAPKAAELKAFLRER 495 (539)
T ss_dssp ECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEESS-SCCCHHHHHHHHHHT
T ss_pred ECHHHHHHHHHhCCCcceEE-----------------------EEeccccccCceEEEEEEECC-CCCCHHHHHHHHHhC
Confidence 99999999999999999998 999999888999999999863 456789999999886
Q ss_pred -h
Q psy7295 163 -A 163 (165)
Q Consensus 163 -l 163 (165)
|
T Consensus 496 ~L 497 (539)
T 1mdb_A 496 GL 497 (539)
T ss_dssp TC
T ss_pred CC
Confidence 5
No 5
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.97 E-value=3.4e-31 Score=228.50 Aligned_cols=141 Identities=30% Similarity=0.422 Sum_probs=126.7
Q ss_pred CCCcEEEEECCCCCccCC---CCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCC-CceE
Q psy7295 1 MSLNIVKVVDSDNRMVPY---GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRI-KDLI 76 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~---g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~-dd~i 76 (165)
+||++++|+|++|++++. |+.|||+|+||+++.|||++|+.|++.|..++||+|||++++++||+++|+||+ |++|
T Consensus 330 ~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~i 409 (505)
T 3nyq_A 330 LPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLI 409 (505)
T ss_dssp CTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCE
T ss_pred CCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceE
Confidence 589999999999998886 899999999999999999999999999988999999999999999999999998 5999
Q ss_pred EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC-CCCCCHHHH
Q psy7295 77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE-NSSLTEDEL 155 (165)
Q Consensus 77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~-~~~~~~~~l 155 (165)
|++|++|+|.|||+.|.+||+|.+++ |++.+++..++.+++++++.+ ....+.+++
T Consensus 410 k~~G~~v~~~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l 466 (505)
T 3nyq_A 410 KSGGYKIGAGEIENALLEHPEVREAA-----------------------VTGEPDPDLGERIVAWIVPADPAAPPALGTL 466 (505)
T ss_dssp EETTEEECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEESSTTSCCCHHHH
T ss_pred EeCCEEECHHHHHHHHHHCcCccEEE-----------------------EEeeECCCCCcEEEEEEEECCCCCCCCHHHH
Confidence 99999999999999999999999998 999999999999999999875 345678999
Q ss_pred HHHHHhhhc
Q psy7295 156 RGYFKGKAI 164 (165)
Q Consensus 156 ~~~l~~~l~ 164 (165)
+++|+++|.
T Consensus 467 ~~~l~~~L~ 475 (505)
T 3nyq_A 467 ADHVAARLA 475 (505)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhhCC
Confidence 999998874
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.97 E-value=1.9e-31 Score=231.79 Aligned_cols=141 Identities=30% Similarity=0.482 Sum_probs=114.1
Q ss_pred CCCcEEEEEC-CCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc--CCC--eEeeccEEEEecCCcEEEecCCCce
Q psy7295 1 MSLNIVKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG--EDN--WLRTGDQFVLTKDGFGSVVGRIKDL 75 (165)
Q Consensus 1 ~pg~~v~vvd-~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~--~~~--~~~TGD~~~~~~dG~l~~~GR~dd~ 75 (165)
+|+++++|+| ++|++++.|+.|||+|+||+++.|||++++.|++.|. .+| ||+|||++++|+||+|+|+||.||+
T Consensus 362 ~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ 441 (549)
T 3g7s_A 362 MSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEV 441 (549)
T ss_dssp CTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC---
T ss_pred CCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccce
Confidence 5799999999 6799999999999999999999999999999999883 456 9999999999999999999999999
Q ss_pred EEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCC--CCCCHH
Q psy7295 76 IIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTEN--SSLTED 153 (165)
Q Consensus 76 i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~--~~~~~~ 153 (165)
||++|++|+|.|||+.|.+||+|.+++ |++.+++..++.+++++++.++ ...+.+
T Consensus 442 ik~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~ 498 (549)
T 3g7s_A 442 IKYKGYTIAPFELEALLMKHEAVMDVA-----------------------VIGKPDEEAGEVPKAFIVLKPEYRGKVDEE 498 (549)
T ss_dssp ---------CHHHHHHHTTSTTEEEEE-----------------------EECCCC------CEEEEEECSTTTTSCCHH
T ss_pred EEECCEEECHHHHHHHHHhCCCeeeEE-----------------------EEeeEccccCceEEEEEEECCCccCcCCHH
Confidence 999999999999999999999999998 9999999899999999998876 567889
Q ss_pred HHHHHHHhhhc
Q psy7295 154 ELRGYFKGKAI 164 (165)
Q Consensus 154 ~l~~~l~~~l~ 164 (165)
+++++|+++|.
T Consensus 499 ~l~~~l~~~L~ 509 (549)
T 3g7s_A 499 DIIEWVRERIS 509 (549)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhcc
Confidence 99999998874
No 7
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.97 E-value=9e-31 Score=225.18 Aligned_cols=140 Identities=34% Similarity=0.573 Sum_probs=131.3
Q ss_pred CCCcEEEEECCCC---CccCCCCceEEEEE-eCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295 1 MSLNIVKVVDSDN---RMVPYGQQGELLIR-GYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLI 76 (165)
Q Consensus 1 ~pg~~v~vvd~~g---~~~~~g~~GeL~v~-g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i 76 (165)
+|+++++|+|+++ ++++.|+.|||+++ ||.++.|||++|+.|.+.| .+|||+|||++++++||+++|+||.||+|
T Consensus 327 ~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~i 405 (504)
T 1t5h_X 327 GFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405 (504)
T ss_dssp CTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred CCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEE
Confidence 4688999999887 99999999999999 8999999999999999999 68999999999999999999999999999
Q ss_pred EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHH
Q psy7295 77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156 (165)
Q Consensus 77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~ 156 (165)
|++|++|+|.|||+.|.+||+|.+++ |++.+++..++.++++|+++++...+.++++
T Consensus 406 k~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 462 (504)
T 1t5h_X 406 ISGGENIHPSEIERVLGTAPGVTEVV-----------------------VIGLADQRWGQSVTACVVPRLGETLSADALD 462 (504)
T ss_dssp EETTEEECHHHHHHHHTTSTTEEEEE-----------------------EEEEECSSSSEEEEEEEEECTTCCCCHHHHH
T ss_pred EECCEEECHHHHHHHHHhCCCcceEE-----------------------EEEeecCCCCcEEEEEEEecCCcCcCHHHHH
Confidence 99999999999999999999999998 9999999899999999999877677889999
Q ss_pred HHHHh-hhc
Q psy7295 157 GYFKG-KAI 164 (165)
Q Consensus 157 ~~l~~-~l~ 164 (165)
++|++ +|.
T Consensus 463 ~~~~~~~L~ 471 (504)
T 1t5h_X 463 TFCRSSELA 471 (504)
T ss_dssp HHHHTSSCC
T ss_pred HHHhhccCc
Confidence 99987 653
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.97 E-value=7.9e-32 Score=234.20 Aligned_cols=141 Identities=33% Similarity=0.517 Sum_probs=66.2
Q ss_pred CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295 1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG 79 (165)
Q Consensus 1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~ 79 (165)
+|+++++|+|++ |++++.|+.|||+|+||+++.|||++|+.|.+.|..+|||+|||++++++||+++++||.||+||++
T Consensus 366 ~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~ 445 (550)
T 3rix_A 366 VPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK 445 (550)
T ss_dssp CTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----------
T ss_pred cCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEEC
Confidence 589999999964 9999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295 80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF 159 (165)
Q Consensus 80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l 159 (165)
|++|+|.|||+.|.+||+|.+++ |++.+++..++.+++++++.++...+.++++++|
T Consensus 446 G~~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~ 502 (550)
T 3rix_A 446 GYQVAPAELESILLQHPNIFDAG-----------------------VAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYV 502 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCcceEE-----------------------EEEeecCCCCceEEEEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999999999 8999999999999999998877777788899888
Q ss_pred Hhhhc
Q psy7295 160 KGKAI 164 (165)
Q Consensus 160 ~~~l~ 164 (165)
+++|.
T Consensus 503 ~~~l~ 507 (550)
T 3rix_A 503 ASQVT 507 (550)
T ss_dssp -----
T ss_pred HHhcc
Confidence 87764
No 9
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.97 E-value=9.8e-31 Score=228.63 Aligned_cols=139 Identities=24% Similarity=0.302 Sum_probs=129.0
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC------CCeEeeccEEEEecCCcEEEecCCCc
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE------DNWLRTGDQFVLTKDGFGSVVGRIKD 74 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~------~~~~~TGD~~~~~~dG~l~~~GR~dd 74 (165)
+|+++++|+|++|++++.|+.|||+|+||+++.|||++|+.|++.|.+ ++||+|||+|++|+||+|+|+||.||
T Consensus 352 ~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d 431 (563)
T 1amu_A 352 IQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDN 431 (563)
T ss_dssp CTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGG
T ss_pred eCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccC
Confidence 579999999999999999999999999999999999999999999853 46999999999999999999999999
Q ss_pred eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHH
Q psy7295 75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDE 154 (165)
Q Consensus 75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~ 154 (165)
+||++|++|+|.|||+.|.+||+|.+++ |++.+++..++.++++++... ..+.++
T Consensus 432 ~Ik~~G~~V~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~~~~~~a~vv~~~--~~~~~~ 486 (563)
T 1amu_A 432 QVKIRGHRVELEEVESILLKHMYISETA-----------------------VSVHKDHQEQPYLCAYFVSEK--HIPLEQ 486 (563)
T ss_dssp EEEETTEEEEHHHHHHHHTTSTTEEEEE-----------------------EEEEECTTSCEEEEEEEEESS--CCCHHH
T ss_pred EEEECCEEeCHHHHHHHHHhCCCcceEE-----------------------EEEeecCCCCeEEEEEEEeCC--CCCHHH
Confidence 9999999999999999999999999998 889898888899999998753 467899
Q ss_pred HHHHHHhhhc
Q psy7295 155 LRGYFKGKAI 164 (165)
Q Consensus 155 l~~~l~~~l~ 164 (165)
++++|+++|.
T Consensus 487 l~~~l~~~L~ 496 (563)
T 1amu_A 487 LRQFSSEELP 496 (563)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHhhCc
Confidence 9999998764
No 10
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.97 E-value=1.2e-30 Score=228.97 Aligned_cols=140 Identities=30% Similarity=0.482 Sum_probs=129.8
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEe-----CcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCce
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRG-----YCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDL 75 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g-----~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~ 75 (165)
+||++++|+|++|+++|.|+.|||+|+| +.++.|||++|+.|++.| .+|||+|||++++|+||+|+|+||.||+
T Consensus 399 ~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~ 477 (580)
T 3etc_A 399 TPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDI 477 (580)
T ss_dssp CTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSC
T ss_pred CCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCE
Confidence 5899999999999999999999999997 789999999999999999 5899999999999999999999999999
Q ss_pred EEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC---H
Q psy7295 76 IIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT---E 152 (165)
Q Consensus 76 i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---~ 152 (165)
||++|++|+|.|||+.|.+||+|.+++ |++.+++..++.+.++|++.++...+ .
T Consensus 478 Ik~~G~~I~p~eIE~~l~~~p~V~~a~-----------------------Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~ 534 (580)
T 3etc_A 478 IKTSGYKVGPFEVESALIQHPAVLECA-----------------------ITGVPDPVRGQVIKATIVLTKDYTPSDSLK 534 (580)
T ss_dssp EEETTEEECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHH
T ss_pred EEECCEEECHHHHHHHHHhCCCeeeEE-----------------------EEeeeccCCCcEEEEEEEECCCCCCCHHHH
Confidence 999999999999999999999999998 99999999999999999998765444 3
Q ss_pred HHHHHHHHhhhc
Q psy7295 153 DELRGYFKGKAI 164 (165)
Q Consensus 153 ~~l~~~l~~~l~ 164 (165)
++|+++|+++|.
T Consensus 535 ~~l~~~l~~~l~ 546 (580)
T 3etc_A 535 NELQDHVKNVTA 546 (580)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHhhCC
Confidence 688888888764
No 11
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.97 E-value=1.3e-31 Score=233.83 Aligned_cols=141 Identities=24% Similarity=0.244 Sum_probs=67.4
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC--------CCeEeeccEEEEecCCcEEEecCC
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE--------DNWLRTGDQFVLTKDGFGSVVGRI 72 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~--------~~~~~TGD~~~~~~dG~l~~~GR~ 72 (165)
+||++++|+|++|++++.|+.|||+|+||+++.|||++++.|++.|.. ++||+|||+|++|+||+|+|+||+
T Consensus 389 ~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~ 468 (570)
T 4gr5_A 389 LAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRA 468 (570)
T ss_dssp CTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-
T ss_pred eCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEccc
Confidence 579999999999999999999999999999999999999999999853 379999999999999999999999
Q ss_pred CceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCC-CCCC
Q psy7295 73 KDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTEN-SSLT 151 (165)
Q Consensus 73 dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~-~~~~ 151 (165)
||+||++|++|+|.|||+.|.+||+|.+++ |++.+++..++.+++++++... ...+
T Consensus 469 ~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~~~~~~a~vv~~~~~~~~~ 525 (570)
T 4gr5_A 469 DDQVKIRGFRVEPGEVEARLVGHPAVRQAA-----------------------VLAQDSRLGDKQLVAYVVAERADAPPD 525 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEECcEEeCHHHHHHHHhcCCCcceEE-----------------------EEEeeCCCCCeEEEEEEEecCCCCCcC
Confidence 999999999999999999999999999999 8888888888999999987543 3456
Q ss_pred HHHHHHHHHhhhc
Q psy7295 152 EDELRGYFKGKAI 164 (165)
Q Consensus 152 ~~~l~~~l~~~l~ 164 (165)
.++++++|+++|.
T Consensus 526 ~~~l~~~l~~~l~ 538 (570)
T 4gr5_A 526 AAELRRHVAEALP 538 (570)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCc
Confidence 7889998888764
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.97 E-value=8.6e-31 Score=227.46 Aligned_cols=139 Identities=32% Similarity=0.449 Sum_probs=104.8
Q ss_pred CCCcEEEEECCCCCccCC--CCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295 1 MSLNIVKVVDSDNRMVPY--GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR 78 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~--g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~ 78 (165)
+|+++++|+|++|++++. ++.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++|+||+++|+||.||+||+
T Consensus 361 ~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~ 440 (541)
T 1v25_A 361 IPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKS 440 (541)
T ss_dssp CTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEE
T ss_pred CCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeee
Confidence 589999999999999985 368999999999999999999999999987999999999999999999999999999999
Q ss_pred CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295 79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158 (165)
Q Consensus 79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~ 158 (165)
+|++|+|.|||+.|.+||+|.+++ |++.+++..++.+++++++. +...+.++++++
T Consensus 441 ~G~~v~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~~~~~~a~vv~~-~~~~~~~~l~~~ 496 (541)
T 1v25_A 441 GGEWISSVDLENALMGHPKVKEAA-----------------------VVAIPHPKWQERPLAVVVPR-GEKPTPEELNEH 496 (541)
T ss_dssp TTEEEEHHHHHCC----------C-----------------------EEEEECSSSSEEEEECC----------------
T ss_pred CCEEECHHHHHHHHHhCCCceEEE-----------------------EEEecCCCcCceEEEEEEEC-CCCCCHHHHHHH
Confidence 999999999999999999999999 99999998899999999876 344566788888
Q ss_pred HHh-hh
Q psy7295 159 FKG-KA 163 (165)
Q Consensus 159 l~~-~l 163 (165)
|++ +|
T Consensus 497 ~~~~~L 502 (541)
T 1v25_A 497 LLKAGF 502 (541)
T ss_dssp ----CC
T ss_pred HHhccC
Confidence 877 55
No 13
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.97 E-value=2.1e-30 Score=223.99 Aligned_cols=138 Identities=30% Similarity=0.594 Sum_probs=128.9
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG 80 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G 80 (165)
+|+++++|+|++|.+++.| .|||+|+||+++.|||++|+.|.+.| .+|||+|||++++++||+++|+||.||+||++|
T Consensus 343 ~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G 420 (517)
T 3r44_A 343 TMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGG 420 (517)
T ss_dssp CTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETT
T ss_pred CCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECC
Confidence 4789999999999999999 89999999999999999999999999 689999999999999999999999999999999
Q ss_pred EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295 81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160 (165)
Q Consensus 81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~ 160 (165)
++|+|.|||+.|.+||+|.+++ |++.+++..++.+++++ +.++...+.++++++|+
T Consensus 421 ~~v~p~eIE~~l~~~p~V~~~~-----------------------Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~ 476 (517)
T 3r44_A 421 ENVYPAEIESVIIGVPGVSEVA-----------------------VIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCG 476 (517)
T ss_dssp EEECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHH
T ss_pred EEECHHHHHHHHHhCCCEeEEE-----------------------EEeccccccCceEEEEE-ECCCCCCCHHHHHHHHH
Confidence 9999999999999999999998 99999998899998888 55566788999999999
Q ss_pred hhhc
Q psy7295 161 GKAI 164 (165)
Q Consensus 161 ~~l~ 164 (165)
++|.
T Consensus 477 ~~L~ 480 (517)
T 3r44_A 477 TRLA 480 (517)
T ss_dssp HHSC
T ss_pred HhCC
Confidence 8874
No 14
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.97 E-value=3.2e-31 Score=228.05 Aligned_cols=140 Identities=34% Similarity=0.592 Sum_probs=68.6
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCC--CceEEE
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRI--KDLIIR 78 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~--dd~i~~ 78 (165)
+|+++++|+|++|++++.|+.|||+|+||+++.|||++|+.|.+.| .+|||+|||++++++||+++|+||. ||+||+
T Consensus 327 ~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~ 405 (509)
T 3ivr_A 327 LFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT 405 (509)
T ss_dssp CTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC--------
T ss_pred CCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE
Confidence 5799999999999999999999999999999999999999999999 4899999999999999999999999 999999
Q ss_pred CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295 79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158 (165)
Q Consensus 79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~ 158 (165)
+|++|+|.+||+.|.+||+|.+++ |++.+++..++.+++++++.++...+.++++++
T Consensus 406 ~G~~v~p~eiE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~ 462 (509)
T 3ivr_A 406 GGENVYPAEVEGALKQHPAIADAV-----------------------VIGVPDPQWSEAIKAVCVCKPGESIAADALAEF 462 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEECHHHHHHHHHhCCCceeEE-----------------------EEeccccccCcEEEEEEEeCCCCCCCHHHHHHH
Confidence 999999999999999999999999 899999888999999999887777778889999
Q ss_pred HHhhhc
Q psy7295 159 FKGKAI 164 (165)
Q Consensus 159 l~~~l~ 164 (165)
|+++|.
T Consensus 463 l~~~L~ 468 (509)
T 3ivr_A 463 VASLIA 468 (509)
T ss_dssp ------
T ss_pred HHhhCc
Confidence 888764
No 15
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.97 E-value=4.5e-31 Score=229.37 Aligned_cols=136 Identities=38% Similarity=0.529 Sum_probs=70.4
Q ss_pred CCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcE
Q psy7295 2 SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81 (165)
Q Consensus 2 pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~ 81 (165)
|+++++|+|++|++++.|+.|||+|+||+++.|||++|+.|++.|..+|||+|||++++++||+++|+||.||+||++|+
T Consensus 368 ~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~ 447 (544)
T 3o83_A 368 SDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGE 447 (544)
T ss_dssp TTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------
T ss_pred CCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCE
Confidence 68899999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295 82 NIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG 161 (165)
Q Consensus 82 ~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 161 (165)
+|+|.|||+.|.+||+|.+++ |++.+++..++.++++++..+ ...+.+++++++++
T Consensus 448 ~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~~~~ 503 (544)
T 3o83_A 448 KIASEEIEKLILLHPEVMHAA-----------------------LVAIVDEQFGEKSCAFIVSRN-PELKAVVLRRHLME 503 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EECHHHHHHHHHhCCCccEEE-----------------------EEeccCCCCCceEEEEEEeCC-CCCCHHHHHHHHHh
Confidence 999999999999999999999 889999888999999998765 34566777777776
No 16
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.97 E-value=5.1e-30 Score=225.87 Aligned_cols=135 Identities=30% Similarity=0.514 Sum_probs=127.9
Q ss_pred CCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcE
Q psy7295 2 SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81 (165)
Q Consensus 2 pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~ 81 (165)
|+++++|+|++|+++|.|+.|||+|+||++++|||++|+.|++.|..++||+|||++++++||+++|+||.||+||++|+
T Consensus 363 ~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ 442 (617)
T 3rg2_A 363 PDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGE 442 (617)
T ss_dssp TTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTE
T ss_pred CCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCE
Confidence 57899999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred EEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295 82 NIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG 161 (165)
Q Consensus 82 ~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 161 (165)
+|+|.|||+.|.+||+|.+++ |++.+++..++.++++++..+ ..+.+++++++++
T Consensus 443 ri~~~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~ 497 (617)
T 3rg2_A 443 KIAAEEIENLLLRHPAVIYAA-----------------------LVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLRE 497 (617)
T ss_dssp EEEHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHT
T ss_pred EeCHHHHHHHHHhCCCeeEEE-----------------------EEeccCcccCeeEEEEEEeCC--CCCHHHHHHHHHh
Confidence 999999999999999999998 888888888899999999865 4678899999987
No 17
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.97 E-value=3e-30 Score=229.13 Aligned_cols=141 Identities=24% Similarity=0.321 Sum_probs=129.2
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEe--CcccccccCChhhhhhhhcC--CCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRG--YCNMLRYWGNEEKTKEILGE--DNWLRTGDQFVLTKDGFGSVVGRIKDLI 76 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g--~~~~~gY~~~~~~t~~~~~~--~~~~~TGD~~~~~~dG~l~~~GR~dd~i 76 (165)
+||++++|+|++|++++.|+.|||+|+| |+++.|||++++.+.+.|.. +|||+|||++++|+||+++|+||.||+|
T Consensus 441 ~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I 520 (652)
T 1pg4_A 441 FFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL 520 (652)
T ss_dssp CTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEE
T ss_pred cCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEE
Confidence 5799999999999999999999999999 79999999999999887743 7899999999999999999999999999
Q ss_pred EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC---HH
Q psy7295 77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT---ED 153 (165)
Q Consensus 77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---~~ 153 (165)
|++|+||+|.|||+.|.+||+|.+|+ |++.+++..++.+++||+++++...+ .+
T Consensus 521 k~~G~rI~~~eIE~~l~~~p~V~ea~-----------------------Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~ 577 (652)
T 1pg4_A 521 NVSGHRLGTAEIESALVAHPKIAEAA-----------------------VVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577 (652)
T ss_dssp EETTEEEEHHHHHHHHHHSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred EECCEEECHHHHHHHHHhCCCcceEE-----------------------EEEEEcCCCCeEEEEEEEECCCCCCCHHHHH
Confidence 99999999999999999999999998 99999988899999999998765544 47
Q ss_pred HHHHHHHhhhc
Q psy7295 154 ELRGYFKGKAI 164 (165)
Q Consensus 154 ~l~~~l~~~l~ 164 (165)
+|+++|+++|.
T Consensus 578 ~l~~~l~~~l~ 588 (652)
T 1pg4_A 578 EVRNWVRKEIG 588 (652)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 88888888763
No 18
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.97 E-value=1.2e-29 Score=218.61 Aligned_cols=139 Identities=22% Similarity=0.200 Sum_probs=125.0
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC---CCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE---DNWLRTGDQFVLTKDGFGSVVGRIKDLII 77 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~---~~~~~TGD~~~~~~dG~l~~~GR~dd~i~ 77 (165)
+|+++++|+|++|++++.|+.|||+|+||+++.|||++|+.|++.|.. .+||+|||++++ +||+++++||.||+||
T Consensus 324 ~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik 402 (511)
T 3e7w_A 324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIK 402 (511)
T ss_dssp CTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEE
T ss_pred eCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEE
Confidence 489999999999999999999999999999999999999999999842 237999999999 5999999999999999
Q ss_pred ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH----H
Q psy7295 78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE----D 153 (165)
Q Consensus 78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~----~ 153 (165)
++|++|+|.|||+.|.+||+|.+++ |++.+++..++.+++++++.++...+. +
T Consensus 403 ~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~ 459 (511)
T 3e7w_A 403 LHGYRMELEEIEFHVRQSQYVRSAV-----------------------VIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTS 459 (511)
T ss_dssp ETTEEEEHHHHHHHHHHSTTEEEEE-----------------------EEEECSSSSCCEEEEEEEECCCCCSSHHHHHH
T ss_pred ECCEEeCHHHHHHHHHhCCCcceEE-----------------------EEEEcCCCCceEEEEEEEeccccccchhhHHH
Confidence 9999999999999999999999998 889888888999999999877654443 5
Q ss_pred HHHHHHHhhh
Q psy7295 154 ELRGYFKGKA 163 (165)
Q Consensus 154 ~l~~~l~~~l 163 (165)
+++++|+++|
T Consensus 460 ~l~~~l~~~L 469 (511)
T 3e7w_A 460 AIKKELAASL 469 (511)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhhC
Confidence 6777777665
No 19
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.96 E-value=2.8e-30 Score=222.51 Aligned_cols=140 Identities=21% Similarity=0.234 Sum_probs=117.5
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhh---cCCCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEIL---GEDNWLRTGDQFVLTKDGFGSVVGRIKDLII 77 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~---~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~ 77 (165)
+|+++++|+|++|++++.|+.|||+|+||+++.|||++++.|++.| +.++||+|||+|++|+||++++.||.||+||
T Consensus 328 ~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~ 407 (521)
T 3l8c_A 328 KPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIK 407 (521)
T ss_dssp CTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC
T ss_pred cCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEe
Confidence 4789999999999999999999999999999999999999999998 4568999999999999999999999999999
Q ss_pred ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCC-CCceEEEEEEeCCCCCCC-----
Q psy7295 78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDER-MGEEIGASIRLTENSSLT----- 151 (165)
Q Consensus 78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~a~v~~~~~~~~~----- 151 (165)
++|++|+|.+||+.|.+||+|.+++ |++.+++. .++.++++++++++....
T Consensus 408 ~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~ 464 (521)
T 3l8c_A 408 YAGYRIELEDVSQQLNQSPMVASAV-----------------------AVPRYNKEHKVQNLLAYIVVKDGVKERFDREL 464 (521)
T ss_dssp -----CBHHHHHHHHHTSTTEEEEE-----------------------EECCCSSSCC---CEEEEEECTTSGGGCSSHH
T ss_pred ECCEEeCHHHHHHHHHcCCCcceEE-----------------------EEEeecCCCCceEEEEEEEecCccccccccch
Confidence 9999999999999999999999998 88776544 468899999987754321
Q ss_pred --HHHHHHHHHhhh
Q psy7295 152 --EDELRGYFKGKA 163 (165)
Q Consensus 152 --~~~l~~~l~~~l 163 (165)
.++++++|+++|
T Consensus 465 ~~~~~l~~~l~~~l 478 (521)
T 3l8c_A 465 ELTKAIKASVKDHM 478 (521)
T ss_dssp HHHHHHHHHSGGGS
T ss_pred hhHHHHHHHHHhhC
Confidence 467888887765
No 20
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.96 E-value=1.3e-29 Score=218.04 Aligned_cols=139 Identities=22% Similarity=0.246 Sum_probs=125.6
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc---CCCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG---EDNWLRTGDQFVLTKDGFGSVVGRIKDLII 77 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~---~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~ 77 (165)
+|+++++|+|++|++++.|+.|||+|+||+++.|||++|+.|++.|. .++||+|||++++ +||+++|.||.||+||
T Consensus 325 ~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik 403 (512)
T 3fce_A 325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIK 403 (512)
T ss_dssp CTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEE
T ss_pred cCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEE
Confidence 47899999999999999999999999999999999999999999983 4679999999999 7999999999999999
Q ss_pred ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH----H
Q psy7295 78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE----D 153 (165)
Q Consensus 78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~----~ 153 (165)
++|++|+|.+||+.|.+||+|.+++ |++.+++..++.+++++++.+....+. +
T Consensus 404 ~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~ 460 (512)
T 3fce_A 404 LHGYRMELEEIEHHLRACSYVEGAV-----------------------IVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTS 460 (512)
T ss_dssp ETTEEECHHHHHHHHHHSTTEEEEE-----------------------EEEEEETTEEEEEEEEEEECSCCCSSHHHHHH
T ss_pred ECCEEECHHHHHHHHHhCCCcceEE-----------------------EEEEecCCCceEEEEEEecCCccccchhhhHH
Confidence 9999999999999999999999998 889988888899999999876544443 4
Q ss_pred HHHHHHHhhh
Q psy7295 154 ELRGYFKGKA 163 (165)
Q Consensus 154 ~l~~~l~~~l 163 (165)
+++++|+++|
T Consensus 461 ~l~~~l~~~L 470 (512)
T 3fce_A 461 AIKKELNERL 470 (512)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhhC
Confidence 6777777665
No 21
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.96 E-value=6.2e-30 Score=223.82 Aligned_cols=140 Identities=28% Similarity=0.389 Sum_probs=126.9
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEE-----eCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCce
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIR-----GYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDL 75 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~-----g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~ 75 (165)
+|+++++|+|++|+++|.|+.|||+|+ ||+++.|||++|+.|.+.| .++||+|||++++|+||+++|+||.||+
T Consensus 380 ~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~ 458 (570)
T 3c5e_A 380 ASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDI 458 (570)
T ss_dssp CTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred CCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCE
Confidence 478999999999999999999999999 9999999999999999998 5799999999999999999999999999
Q ss_pred EEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC-C----
Q psy7295 76 IIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS-L---- 150 (165)
Q Consensus 76 i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~-~---- 150 (165)
||++|++|+|.|||+.|.+||+|.+++ |++.+++..++.++++|++.++.. .
T Consensus 459 Ik~~G~~V~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~ 515 (570)
T 3c5e_A 459 INSSGYRIGPSEVENALMEHPAVVETA-----------------------VISSPDPVRGEVVKAFVVLASQFLSHDPEQ 515 (570)
T ss_dssp EEETTEEECHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECGGGTTSCHHH
T ss_pred EEECCEEECHHHHHHHHHhCCCcceEE-----------------------EEeeeCCCCCeEEEEEEEECCcccCcchHH
Confidence 999999999999999999999999998 999998888999999999865431 1
Q ss_pred CHHHHHHHHHhhhc
Q psy7295 151 TEDELRGYFKGKAI 164 (165)
Q Consensus 151 ~~~~l~~~l~~~l~ 164 (165)
..++++++|+++|.
T Consensus 516 ~~~~l~~~l~~~L~ 529 (570)
T 3c5e_A 516 LTKELQQHVKSVTA 529 (570)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhCc
Confidence 24678888877653
No 22
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.96 E-value=3.1e-30 Score=237.54 Aligned_cols=141 Identities=32% Similarity=0.497 Sum_probs=71.4
Q ss_pred CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295 1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG 79 (165)
Q Consensus 1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~ 79 (165)
+|+++++|+|++ |++++.|+.|||+|+||.++.|||++|+.|++.|..++||+|||++++++||+++|+||.||+||++
T Consensus 408 ~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~ 487 (979)
T 3tsy_A 408 VRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYK 487 (979)
T ss_dssp CSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----
T ss_pred cCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEEC
Confidence 579999999965 9999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295 80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF 159 (165)
Q Consensus 80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l 159 (165)
|++|+|.|||+.|.+||+|.+++ |++.+++..++.++++++..++...+.++++++|
T Consensus 488 G~~v~~~eIE~~l~~~p~V~~~~-----------------------Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l 544 (979)
T 3tsy_A 488 GFQVAPAELEALLIGHPDITDVA-----------------------VVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFV 544 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCcceEE-----------------------EEEecccCCCcEEEEEEEECCCCCCCHHHHHHHH
Confidence 99999999999999999999999 8898888889999999998777677788899998
Q ss_pred Hhhhc
Q psy7295 160 KGKAI 164 (165)
Q Consensus 160 ~~~l~ 164 (165)
+++|.
T Consensus 545 ~~~l~ 549 (979)
T 3tsy_A 545 SKQVV 549 (979)
T ss_dssp -----
T ss_pred HHhcc
Confidence 88764
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.96 E-value=2.8e-29 Score=216.86 Aligned_cols=139 Identities=27% Similarity=0.491 Sum_probs=121.6
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG 80 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G 80 (165)
+|+++++|+|++|+++|.|+.|||+|+||+++.|||++++.|.+.| .++||+|||++++++||++++.||.||+||++|
T Consensus 358 ~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G 436 (529)
T 2v7b_A 358 VPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSG 436 (529)
T ss_dssp CTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC---
T ss_pred CCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEECC
Confidence 5799999999999999999999999999999999999999999998 478999999999999999999999999999999
Q ss_pred EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCC---CHHHHHH
Q psy7295 81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSL---TEDELRG 157 (165)
Q Consensus 81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~---~~~~l~~ 157 (165)
++|+|.+||+.|.+||+|.+++ |++. ++..++.+++++++.++... ..+++++
T Consensus 437 ~~v~p~eIE~~l~~~p~V~~~~-----------------------vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~ 492 (529)
T 2v7b_A 437 QYVSPVEVEMVLVQHDAVLEAA-----------------------VVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKA 492 (529)
T ss_dssp -CBCHHHHHHHHTTSTTEEEEE-----------------------EEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHH
T ss_pred EEECHHHHHHHHHhCCCcceEE-----------------------EEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHH
Confidence 9999999999999999999998 8887 66677889999998765321 2467888
Q ss_pred HHHhhhc
Q psy7295 158 YFKGKAI 164 (165)
Q Consensus 158 ~l~~~l~ 164 (165)
+|+++|.
T Consensus 493 ~l~~~L~ 499 (529)
T 2v7b_A 493 FVKDRLA 499 (529)
T ss_dssp HHHTTSC
T ss_pred HHHhhcc
Confidence 8887764
No 24
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.96 E-value=1.6e-28 Score=232.08 Aligned_cols=139 Identities=27% Similarity=0.338 Sum_probs=128.3
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc------CCCeEeeccEEEEecCCcEEEecCCCc
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG------EDNWLRTGDQFVLTKDGFGSVVGRIKD 74 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~------~~~~~~TGD~~~~~~dG~l~~~GR~dd 74 (165)
+||++++|+|++++++|.|++|||+|+|+++++|||++|+.|++.|. .++||+|||++++++||.|+|+||.|+
T Consensus 783 ~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~ 862 (1304)
T 2vsq_A 783 ISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDD 862 (1304)
T ss_dssp CTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGG
T ss_pred eCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCC
Confidence 57999999999999999999999999999999999999999999984 346999999999999999999999999
Q ss_pred eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHH
Q psy7295 75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDE 154 (165)
Q Consensus 75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~ 154 (165)
+||++|+||+|.|||+.|.+||+|.+|+ |++.+++..++.++++++... ..+.++
T Consensus 863 qvki~G~rie~~eIE~~l~~~p~V~~a~-----------------------V~~~~~~~~~~~l~a~vv~~~--~~~~~~ 917 (1304)
T 2vsq_A 863 QVKIRGHRIELEEIEKQLQEYPGVKDAV-----------------------VVADRHESGDASINAYLVNRT--QLSAED 917 (1304)
T ss_dssp EEEETTEEEEHHHHHHHHHHSSSCCEEE-----------------------EEEECCSSSCCEEEEEEECSS--SSCHHH
T ss_pred EEEECCEeeCHHHHHHHHHhCCCCceEE-----------------------EEEEecCCCCEEEEEEEeCCC--CCCHHH
Confidence 9999999999999999999999999998 888888888899999998754 567899
Q ss_pred HHHHHHhhhc
Q psy7295 155 LRGYFKGKAI 164 (165)
Q Consensus 155 l~~~l~~~l~ 164 (165)
++++|+++|-
T Consensus 918 l~~~l~~~Lp 927 (1304)
T 2vsq_A 918 VKAHLKKQLP 927 (1304)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhCh
Confidence 9999988763
No 25
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.96 E-value=5.8e-29 Score=221.50 Aligned_cols=141 Identities=21% Similarity=0.285 Sum_probs=125.0
Q ss_pred CCCcEEEEECC-CCCccCC-CCceEEEEEe--CcccccccCChhhhhhhhcC--CCeEeeccEEEEecCCcEEEecCCCc
Q psy7295 1 MSLNIVKVVDS-DNRMVPY-GQQGELLIRG--YCNMLRYWGNEEKTKEILGE--DNWLRTGDQFVLTKDGFGSVVGRIKD 74 (165)
Q Consensus 1 ~pg~~v~vvd~-~g~~~~~-g~~GeL~v~g--~~~~~gY~~~~~~t~~~~~~--~~~~~TGD~~~~~~dG~l~~~GR~dd 74 (165)
+||++++|+|+ +|++++. |+.|||+|+| |+++.|||++++.+.+.|.. +|||+|||++++|+||+++|+||.||
T Consensus 448 ~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd 527 (663)
T 1ry2_A 448 FFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDD 527 (663)
T ss_dssp CTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTS
T ss_pred cCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCC
Confidence 57999999999 8999998 9999999999 58999999999999888754 78999999999999999999999999
Q ss_pred eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC---C-
Q psy7295 75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS---L- 150 (165)
Q Consensus 75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~---~- 150 (165)
+||++|+||+|.|||+.|.+||.|.+++ |++.+++..++.+++||+++++.. .
T Consensus 528 ~Ik~~G~rI~~~eIE~~l~~~p~V~ea~-----------------------Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~ 584 (663)
T 1ry2_A 528 VVNVSGHRLSTAEIEAAIIEDPIVAECA-----------------------VVGFNDDLTGQAVAAFVVLKNKSSWSTAT 584 (663)
T ss_dssp CBCSSSCCBCHHHHHHHHHSSTTEEEEE-----------------------EECCCCCTTSCCCEEEEEEC---------
T ss_pred EEEECCEEcCHHHHHHHHHhCCCcceEE-----------------------EEEEecCCCCeEEEEEEEEcCCCcccccc
Confidence 9999999999999999999999999998 999999888999999999876543 2
Q ss_pred C------HHHHHHHHHhhhc
Q psy7295 151 T------EDELRGYFKGKAI 164 (165)
Q Consensus 151 ~------~~~l~~~l~~~l~ 164 (165)
+ .++|+++|+++|.
T Consensus 585 ~~~~~~l~~~l~~~l~~~L~ 604 (663)
T 1ry2_A 585 DDELQDIKKHLVFTVRKDIG 604 (663)
T ss_dssp ---CCSHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHhCC
Confidence 1 4778888887764
No 26
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.95 E-value=8.4e-28 Score=208.35 Aligned_cols=136 Identities=28% Similarity=0.399 Sum_probs=115.1
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG 80 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G 80 (165)
+|+++++|+|++|++++.|+.|||+|+||.++.|||++++.+...+ .+|||+|||++++ +||+++|+||.||+||++|
T Consensus 391 ~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G 468 (576)
T 3gqw_A 391 LPEHGIEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRG 468 (576)
T ss_dssp CTTCEEEEECTTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETT
T ss_pred CCCCeEEEECCCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECC
Confidence 4789999999999999999999999999999999999998887765 7899999999999 7999999999999999999
Q ss_pred EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295 81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160 (165)
Q Consensus 81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~ 160 (165)
++|+|.|||+.|.+||+|.+++ +++..++. ....+++..........+++.++++
T Consensus 469 ~~v~p~eIE~~l~~~p~V~~~~-----------------------vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~ 523 (576)
T 3gqw_A 469 RNIWPQDIEYIAEQEPEIHSGD-----------------------AIAFVTAQ--EKIILQIQCRISDEERRGQLIHALA 523 (576)
T ss_dssp EEECHHHHHHHHTTSSSCCTTS-----------------------EEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHhCccccccc-----------------------EEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHH
Confidence 9999999999999999999988 66666553 3344555544433344566777776
Q ss_pred hhh
Q psy7295 161 GKA 163 (165)
Q Consensus 161 ~~l 163 (165)
+++
T Consensus 524 ~~l 526 (576)
T 3gqw_A 524 ARI 526 (576)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 27
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.95 E-value=5.5e-28 Score=213.86 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=107.5
Q ss_pred CCCcEEEEECCCCCc-cCCCCceEEEEEeCcccccccCChhhhhhhhcCC-------CeEeeccEEEEecCCcEEEecCC
Q psy7295 1 MSLNIVKVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED-------NWLRTGDQFVLTKDGFGSVVGRI 72 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~-~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~-------~~~~TGD~~~~~~dG~l~~~GR~ 72 (165)
+||++++|+|+++++ +|.|+.|||+|+||+++.|||++|+.|++.|..+ +||+|||++++++||+|+|+||.
T Consensus 339 ~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~ 418 (620)
T 4dg8_A 339 IAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRG 418 (620)
T ss_dssp CTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECS
T ss_pred ccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccC
Confidence 579999999999887 8999999999999999999999999999999543 79999999999999999999999
Q ss_pred CceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEE
Q psy7295 73 KDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASI 142 (165)
Q Consensus 73 dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v 142 (165)
||+||++|+||+|.|||+.|.+||+|.+|+ |++.+++..++.+++++
T Consensus 419 dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~~~lv~~~~ 465 (620)
T 4dg8_A 419 DGQVKLNGYRLDLPALEQRFRRQPGILDCA-----------------------LLVRERNGVKQLLCAWT 465 (620)
T ss_dssp SSEEEETTEEEEHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTEEEEEEEEE
T ss_pred CCEEEECCEEcCHHHHHHHHHhCCCccEEE-----------------------EEEEeCCCceEEEEEEe
Confidence 999999999999999999999999999998 77777665455554444
No 28
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.95 E-value=1.1e-27 Score=205.42 Aligned_cols=132 Identities=30% Similarity=0.437 Sum_probs=121.2
Q ss_pred CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG 80 (165)
Q Consensus 1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G 80 (165)
+|+++++|+|++ .|+.|||+|+||.++.|||++++.|.. | .+|||+|||++++++||+++++||.||+||++|
T Consensus 333 ~~~~~~~i~d~~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G 405 (501)
T 3ipl_A 333 SANVDVKIKNPN-----KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGG 405 (501)
T ss_dssp CTTCEEEEESCC-----SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSS
T ss_pred CCCcEEEEecCC-----CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECC
Confidence 578999999986 467899999999999999999999887 5 689999999999999999999999999999999
Q ss_pred EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295 81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160 (165)
Q Consensus 81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~ 160 (165)
++|+|.+||+.|.+||+|.+++ |++.+++..++.++++++.. ...+.++++++|+
T Consensus 406 ~~v~p~eiE~~l~~~p~V~~~~-----------------------vv~~~~~~~g~~~~a~v~~~--~~~~~~~l~~~l~ 460 (501)
T 3ipl_A 406 ENIYPYQIETVAKQFPGISDAV-----------------------CVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLS 460 (501)
T ss_dssp CEECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEES--SCCCHHHHHHHHH
T ss_pred EEECHHHHHHHHHhCCCccEEE-----------------------EEEEecccCCceEEEEEEeC--CCCCHHHHHHHHH
Confidence 9999999999999999999998 99999998899999999864 3568899999999
Q ss_pred hhhc
Q psy7295 161 GKAI 164 (165)
Q Consensus 161 ~~l~ 164 (165)
++|.
T Consensus 461 ~~L~ 464 (501)
T 3ipl_A 461 KHLA 464 (501)
T ss_dssp HHSC
T ss_pred hhCc
Confidence 8874
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.95 E-value=3e-28 Score=211.70 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=65.3
Q ss_pred CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcC-CCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295 1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE-DNWLRTGDQFVLTKDGFGSVVGRIKDLIIR 78 (165)
Q Consensus 1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~-~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~ 78 (165)
+|+++++|+|++ +.+++.|+.|||+|+||+++.|||++|+.|...+.+ ++||+|||+|++|+||+|+|+||.||+||+
T Consensus 353 ~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~ 432 (562)
T 3ite_A 353 LGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKV 432 (562)
T ss_dssp CTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC------
T ss_pred CCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeE
Confidence 478999999976 888999999999999999999999999988766532 349999999999999999999999999999
Q ss_pred CcEEEChHHHHHHHhcC-CChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCC-------
Q psy7295 79 GGENIYPSEIEDFLTTH-PDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSL------- 150 (165)
Q Consensus 79 ~G~~v~~~eIE~~l~~~-~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~------- 150 (165)
+|+||+|.|||+.|.++ |.+.+++ |++.+++..++...++++...+...
T Consensus 433 ~G~~v~p~eIE~~l~~~~~~~~~~~-----------------------v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 489 (562)
T 3ite_A 433 RGQRLELGEVSEVIRSLSPTDIDVV-----------------------TLLLNHPGTSKQFLVSFVASSGAAVRGELRWI 489 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEECHHHHHHHHHhcCCCceeEE-----------------------EEEecCCCCcceEEEEEEeccccccccccccc
Confidence 99999999999999998 6777776 7777777766665555554332222
Q ss_pred ------CHHHHHHHHHhhhc
Q psy7295 151 ------TEDELRGYFKGKAI 164 (165)
Q Consensus 151 ------~~~~l~~~l~~~l~ 164 (165)
..++|+++|+++|.
T Consensus 490 ~~~~~~~~~~l~~~~~~~L~ 509 (562)
T 3ite_A 490 NENYKEINNSLRQACEQTLP 509 (562)
T ss_dssp --------------------
T ss_pred ccchhhHHHHHHHHHHhhCC
Confidence 23478888887764
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.94 E-value=9.3e-28 Score=209.09 Aligned_cols=135 Identities=27% Similarity=0.384 Sum_probs=117.1
Q ss_pred EEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcC------CC--eEeeccEEEEecCCcEEEecCCCce
Q psy7295 5 IVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE------DN--WLRTGDQFVLTKDGFGSVVGRIKDL 75 (165)
Q Consensus 5 ~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~------~~--~~~TGD~~~~~~dG~l~~~GR~dd~ 75 (165)
.++|+|++ +.+++.|+.|||+|+||+++.|||++|+.|++.|.+ +| ||+|||+|+++ +|+|+|+||.||+
T Consensus 382 ~v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~ 460 (590)
T 3kxw_A 382 EVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDL 460 (590)
T ss_dssp EEEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCH
T ss_pred CeEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccce
Confidence 38999988 899999999999999999999999999999999954 24 99999999999 9999999999999
Q ss_pred EEECcEEEChHHHHHHH-hcCCChH--HhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCC--CC
Q psy7295 76 IIRGGENIYPSEIEDFL-TTHPDIL--EAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENS--SL 150 (165)
Q Consensus 76 i~~~G~~v~~~eIE~~l-~~~~~v~--~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~ 150 (165)
||++|++|+|.|||+.| ..+|.|. +++ |++.+++. ++.+++++++.++. ..
T Consensus 461 Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~-----------------------v~~~~~~~-~~~~~~~v~~~~~~~~~~ 516 (590)
T 3kxw_A 461 IIIYGKNHYPQDIEFSLMHSPLHHVLGKCA-----------------------AFVIQEEH-EYKLTVMCEVKNRFMDDV 516 (590)
T ss_dssp HHHHHHTTHHHHHHHHHHHSGGGGGEEEEE-----------------------EEEEEETT-EEEEEEEEEESCTTCCHH
T ss_pred EEECCEecCHHHHHHHHHhcCccccCccEE-----------------------EEEecCCC-CceEEEEEEeccccccch
Confidence 99999999999999999 8889998 676 78887765 67888888887653 34
Q ss_pred CHHHHHHHHHhhhc
Q psy7295 151 TEDELRGYFKGKAI 164 (165)
Q Consensus 151 ~~~~l~~~l~~~l~ 164 (165)
+.+++.++|+++|.
T Consensus 517 ~~~~l~~~l~~~l~ 530 (590)
T 3kxw_A 517 AQDNLFNEIFELVY 530 (590)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 56778888877653
No 31
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.89 E-value=7.4e-23 Score=172.79 Aligned_cols=126 Identities=22% Similarity=0.370 Sum_probs=108.0
Q ss_pred CCcEEEEEC-CCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCC------c---EEEecC
Q psy7295 2 SLNIVKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG------F---GSVVGR 71 (165)
Q Consensus 2 pg~~v~vvd-~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG------~---l~~~GR 71 (165)
+++.++|+| ++|++++.|+.|||+|+|+. ...| ..+||+|||+++++++| + +++.||
T Consensus 263 ~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR 329 (436)
T 3qov_A 263 DCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGR 329 (436)
T ss_dssp TTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCB
T ss_pred CceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCc
Confidence 588999999 56999999999999999842 2223 57899999999999998 5 699999
Q ss_pred CCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC
Q psy7295 72 IKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT 151 (165)
Q Consensus 72 ~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~ 151 (165)
.||+||++|++|+|.+||++|.+||+|.+++ +++.+++..++.+.++|+++ +...+
T Consensus 330 ~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~-----------------------vv~~~~~~~~~~l~a~v~~~-~~~~~ 385 (436)
T 3qov_A 330 SDDMFIIKGVNIFPMQVEKILVQFPELGSNY-----------------------LITLETVNNQDEMIVEVELS-DLSTD 385 (436)
T ss_dssp SSSCEEETTEEECHHHHHHHHTTCTTEEEEE-----------------------EEEEEEETTEEEEEEEEEEC-TTCCC
T ss_pred cCCEEEECCEEECHHHHHHHHHhCcCcCCcE-----------------------EEEEEcCCCCcEEEEEEEEc-Ccccc
Confidence 9999999999999999999999999999988 88888887888999999987 54444
Q ss_pred ----HHHHHHHHHhhhc
Q psy7295 152 ----EDELRGYFKGKAI 164 (165)
Q Consensus 152 ----~~~l~~~l~~~l~ 164 (165)
.+++.++|+++|.
T Consensus 386 ~~~~~~~l~~~l~~~l~ 402 (436)
T 3qov_A 386 NYIELEKIRRDIIRQLK 402 (436)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH
Confidence 5677777776653
No 32
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.88 E-value=1e-22 Score=171.96 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=106.8
Q ss_pred CCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEec-CCcE-----EEecCCCc
Q psy7295 2 SLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK-DGFG-----SVVGRIKD 74 (165)
Q Consensus 2 pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~-dG~l-----~~~GR~dd 74 (165)
+++.++|+|++ |+++|.|+.|||+++|. +.+.| ..+||+|||++++++ +|++ ++.||.||
T Consensus 268 ~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d 334 (437)
T 2y27_A 268 DHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDD 334 (437)
T ss_dssp TTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGG
T ss_pred CceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCC
Confidence 67899999975 99999999999999983 22333 568999999999999 6985 89999999
Q ss_pred eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC---CC
Q psy7295 75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS---LT 151 (165)
Q Consensus 75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~---~~ 151 (165)
+||++|++|+|.+||++|.+||+|.+++ +++.+++..++.++++|++.++.. .+
T Consensus 335 ~i~~~G~~v~p~eiE~~l~~~p~V~~~~-----------------------vv~~~~~~~~~~l~a~v~~~~~~~~~~~~ 391 (437)
T 2y27_A 335 MMIVRGVNVFPTQIEEQLLKQRALAPHY-----------------------QIVLTKEGPLDVLTLNVEPCPETAPDTAA 391 (437)
T ss_dssp CEEETTEEECHHHHHHHHTTCTTBCSCC-----------------------EEEEEEETTEEEEEEEECBCTTTTTCHHH
T ss_pred eEEECCeEECHHHHHHHHHhCcCcCccE-----------------------EEEEeecCCCceEEEEEEECCCccchhhh
Confidence 9999999999999999999999999988 888877777889999999876543 23
Q ss_pred HHHHHHHHHhhh
Q psy7295 152 EDELRGYFKGKA 163 (165)
Q Consensus 152 ~~~l~~~l~~~l 163 (165)
.++++++|+++|
T Consensus 392 ~~~l~~~l~~~l 403 (437)
T 2y27_A 392 IQVAKQALAYDI 403 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467777777765
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.87 E-value=1.3e-22 Score=171.51 Aligned_cols=126 Identities=21% Similarity=0.349 Sum_probs=106.0
Q ss_pred CCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecC-CcE-----EEecCCCc
Q psy7295 2 SLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD-GFG-----SVVGRIKD 74 (165)
Q Consensus 2 pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~d-G~l-----~~~GR~dd 74 (165)
+++.++|+|++ |++++.|+.|||+|+|. +.+.| ..+||+|||+++++++ |++ ++.||.||
T Consensus 270 ~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d 336 (443)
T 2y4o_A 270 DHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDD 336 (443)
T ss_dssp TTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSC
T ss_pred CCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCC
Confidence 57899999965 99999999999999983 22233 4689999999999999 987 89999999
Q ss_pred eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC--C---CC
Q psy7295 75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE--N---SS 149 (165)
Q Consensus 75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~--~---~~ 149 (165)
+||++|++|+|.+||++|.+||+|.+++ +++.+++..++.+.++|++.+ + ..
T Consensus 337 ~i~~~G~~v~p~eiE~~l~~~p~V~~~~-----------------------vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 393 (443)
T 2y4o_A 337 MLIVRGVNVFPSQIEEIVVALPLLSGQF-----------------------QITLSRDGHMDRLDLAVELRSEAAASVTD 393 (443)
T ss_dssp CEEETTEEECHHHHHHHHHTSTTEEEEE-----------------------EEEEEEETTEEEEEEEEEECHHHHTTCCH
T ss_pred eEEECCEEECHHHHHHHHHhCcCcCccE-----------------------EEEEecCCCCceEEEEEEECCcccccchh
Confidence 9999999999999999999999999988 777777767788999999865 2 22
Q ss_pred CCHHHHHHHHHhhh
Q psy7295 150 LTEDELRGYFKGKA 163 (165)
Q Consensus 150 ~~~~~l~~~l~~~l 163 (165)
.+.++++++|+++|
T Consensus 394 ~~~~~l~~~l~~~l 407 (443)
T 2y4o_A 394 GERAALARELQHRI 407 (443)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34567788887765
No 34
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.81 E-value=1e-20 Score=157.16 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=100.6
Q ss_pred cCCCCceEEEEEeCcccccccCChhhhh-hhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEEEChHHHHHHHh-
Q psy7295 16 VPYGQQGELLIRGYCNMLRYWGNEEKTK-EILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLT- 93 (165)
Q Consensus 16 ~~~g~~GeL~v~g~~~~~gY~~~~~~t~-~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~- 93 (165)
++.+..|++++.+|++..+|.++++... ..+..++||+|||++++|++| ++|+||.||+||++|+||+|.|||+.|.
T Consensus 193 ~~~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 193 LNGPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAA 271 (358)
T ss_dssp CSSTTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred ccccccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHH
Confidence 4456678888888888888887766543 234578999999999999988 6678999999999999999999998874
Q ss_pred --cCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhhc
Q psy7295 94 --THPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164 (165)
Q Consensus 94 --~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~l~ 164 (165)
.||+|.+++| +.+.+++..++.++++++... ...+.++++++|+++|.
T Consensus 272 ~~~~p~V~~a~v----------------------v~~~~d~~~ge~~~a~v~~~~-~~~~~~~l~~~l~~~L~ 321 (358)
T 4gs5_A 272 VFHHLNIGNAFF----------------------CWWEPDAKLGQKLVLVIENAM-PEALTERLTAEIRSRVS 321 (358)
T ss_dssp HHHHHTCCCCEE----------------------EEEEEETTTEEEEEEEEESCC-CHHHHHHHHHHHHHHSC
T ss_pred hccCCCccEEEE----------------------EEecCCccCCEEEEEEEECCC-CCcCHHHHHHHHHhhCC
Confidence 5799999872 457788888999999887543 34556889999998874
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.71 E-value=9.7e-18 Score=142.16 Aligned_cols=68 Identities=40% Similarity=0.680 Sum_probs=62.9
Q ss_pred CCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhc-----------CCCeEeeccEEEEecCCcEEEe
Q psy7295 2 SLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG-----------EDNWLRTGDQFVLTKDGFGSVV 69 (165)
Q Consensus 2 pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~-----------~~~~~~TGD~~~~~~dG~l~~~ 69 (165)
| ++++|+|++ |++++.|+.|||+|+||+++.|||++|+.|++.|. ++|||+|||+|+++ ||+|+|+
T Consensus 401 ~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~ 478 (480)
T 3t5a_A 401 S-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFII 478 (480)
T ss_dssp S-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEEC
T ss_pred C-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEe
Confidence 5 789999987 89999999999999999999999999999999995 56799999999997 9999999
Q ss_pred cC
Q psy7295 70 GR 71 (165)
Q Consensus 70 GR 71 (165)
||
T Consensus 479 GR 480 (480)
T 3t5a_A 479 GR 480 (480)
T ss_dssp C-
T ss_pred CC
Confidence 98
No 36
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.24 E-value=1.6e-11 Score=85.44 Aligned_cols=70 Identities=20% Similarity=0.335 Sum_probs=57.9
Q ss_pred cCCCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC
Q psy7295 70 GRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS 149 (165)
Q Consensus 70 GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~ 149 (165)
.|.||+|+++|.||+|.+||++|.+||+|.+++ +++++++..++.+.+++++.++..
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~-----------------------vv~v~~~~~~~~~~~~V~~~~~~~ 57 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDY-----------------------LITLETAESNDEMTVEVELSQLFT 57 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEE-----------------------EEEEEEETTEEEEEEEEEECTTCC
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccce-----------------------EEEEeccccceeEEEEEEEeeccc
Confidence 489999999999999999999999999999998 888899889999999999877655
Q ss_pred CCH---HHHHHHHHhh
Q psy7295 150 LTE---DELRGYFKGK 162 (165)
Q Consensus 150 ~~~---~~l~~~l~~~ 162 (165)
.+. +++.+.++++
T Consensus 58 ~~~~~~~~l~~~i~~~ 73 (109)
T 3lax_A 58 DDYGRLQALTREITRQ 73 (109)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHH
Confidence 443 3344444443
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.18 E-value=3e-11 Score=84.34 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=56.5
Q ss_pred cCCCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC
Q psy7295 70 GRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS 149 (165)
Q Consensus 70 GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~ 149 (165)
||.||+|+++|.|++|.+||+.|.+||+|.+++ +++++++..++.+.+++++ ++..
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~-----------------------~v~v~~~~~~e~l~~~ve~-~~~~ 56 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDY-----------------------LITLETAESNDEMTVEVEL-SQLF 56 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEE-----------------------EEEEEEETTEEEEEEEEEE-CTTC
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcE-----------------------EEEEEcCCCceEEEEEEEE-cCcc
Confidence 799999999999999999999999999999887 7777777778899999998 5432
Q ss_pred C----CHHHHHHHHHhhh
Q psy7295 150 L----TEDELRGYFKGKA 163 (165)
Q Consensus 150 ~----~~~~l~~~l~~~l 163 (165)
. +.+++.+.+++++
T Consensus 57 ~~~~~~~~~l~~~i~~~l 74 (109)
T 3gxs_A 57 TDDYGRLQALTREITRQL 74 (109)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 2 3455666666554
No 38
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=98.01 E-value=2.5e-06 Score=69.87 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=40.0
Q ss_pred CCCcEEEEECC-CCCccCCCCceEEEEEeCc---ccccccCChhhhhhhhcCCCeEeeccEEEEecC--C-------cEE
Q psy7295 1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGYC---NMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD--G-------FGS 67 (165)
Q Consensus 1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~~---~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~d--G-------~l~ 67 (165)
+|+++++|+|+ +|+++|.|+.|||+|++.. ++. .|+|||++...+. | .+.
T Consensus 292 ~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~l~-----------------ry~tgD~~~~~~~~~g~~~d~~~~v~ 354 (369)
T 3hgu_A 292 SPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYP-----------------RVAERDTAIRLPGVSGFAGDRLADIE 354 (369)
T ss_dssp TTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEEEE-----------------EEEEEEEEEEECCSTTCSSCEEEEEE
T ss_pred CCCeEEEEECCCCCcCCCCCCceEEEEEEcCcccccc-----------------cccCCceEEEecCCCCCcCcccccce
Confidence 47899999998 7999999999999998732 122 3578888877543 3 245
Q ss_pred EecCCCceEEECcE
Q psy7295 68 VVGRIKDLIIRGGE 81 (165)
Q Consensus 68 ~~GR~dd~i~~~G~ 81 (165)
.++|.++..++.|.
T Consensus 355 ~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 355 PLKISEGRKVIEGV 368 (369)
T ss_dssp ECC-----------
T ss_pred eccccCCCceeeec
Confidence 67888888888775
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.63 E-value=4.3e-05 Score=67.37 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=54.1
Q ss_pred ccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEec----CCcEEEecCCCceEEECcEEEChHHHHH
Q psy7295 15 MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK----DGFGSVVGRIKDLIIRGGENIYPSEIED 90 (165)
Q Consensus 15 ~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~----dG~l~~~GR~dd~i~~~G~~v~~~eIE~ 90 (165)
.|..|+.+||+|+...-.-+ |++||+.+++. ...+.|+||.++++++.|+++++.+||+
T Consensus 380 eVe~G~~YelViTt~~GL~R-----------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~ 442 (581)
T 4eql_A 380 DVKLGCTYEPVVTNFAGLYR-----------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFK 442 (581)
T ss_dssp GCCTTCEEEEEEECSSSCCS-----------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHH
T ss_pred HcCCCceEEEEEeeccceee-----------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHH
Confidence 35689999999988653333 49999999975 4579999999999999999999999999
Q ss_pred HHhcC
Q psy7295 91 FLTTH 95 (165)
Q Consensus 91 ~l~~~ 95 (165)
++.+.
T Consensus 443 al~~a 447 (581)
T 4eql_A 443 AVSQA 447 (581)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99754
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.61 E-value=4.8e-05 Score=67.38 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=53.7
Q ss_pred ccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEec----CCcEEEecCCCceEEECcEEEChHHHHH
Q psy7295 15 MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK----DGFGSVVGRIKDLIIRGGENIYPSEIED 90 (165)
Q Consensus 15 ~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~----dG~l~~~GR~dd~i~~~G~~v~~~eIE~ 90 (165)
.|..|+.+||+|+... |+|. |++||+.+++. ...+.|+||.++++++.|.++++.+||+
T Consensus 392 eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~ 454 (609)
T 4b2g_A 392 HVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQK 454 (609)
T ss_dssp GCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred HcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHH
Confidence 4778999999997754 4443 69999999973 4679999999999999999999999999
Q ss_pred HHhc
Q psy7295 91 FLTT 94 (165)
Q Consensus 91 ~l~~ 94 (165)
++..
T Consensus 455 av~~ 458 (609)
T 4b2g_A 455 AVDN 458 (609)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=97.40 E-value=0.00012 Score=64.53 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=53.2
Q ss_pred ccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecC----CcEEEecCCCceEEECcEEEChHHHHH
Q psy7295 15 MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD----GFGSVVGRIKDLIIRGGENIYPSEIED 90 (165)
Q Consensus 15 ~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~d----G~l~~~GR~dd~i~~~G~~v~~~eIE~ 90 (165)
.|..|+.+||+|+...-.-+ |++||+.+++.- ..+.|+||.++++++.|.++++.+||+
T Consensus 387 eve~G~~YelviTt~~GL~R-----------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~ 449 (581)
T 4epl_A 387 QVKIGEEYEVVITNYAGLYR-----------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQL 449 (581)
T ss_dssp GCCTTCEEEEEEESTTSCSS-----------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred HcCCCCeEEEEEeeccceee-----------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHH
Confidence 57789999999988653333 499999998642 469999999999999999999999999
Q ss_pred HHhc
Q psy7295 91 FLTT 94 (165)
Q Consensus 91 ~l~~ 94 (165)
++..
T Consensus 450 al~~ 453 (581)
T 4epl_A 450 SVES 453 (581)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
No 42
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=35.82 E-value=56 Score=20.00 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=15.9
Q ss_pred hHHHHHHHhcCCChHHhH
Q psy7295 85 PSEIEDFLTTHPDILEAY 102 (165)
Q Consensus 85 ~~eIE~~l~~~~~v~~a~ 102 (165)
..++++.|.++|.|.++.
T Consensus 15 ~~~~~~~l~~~peV~e~~ 32 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAY 32 (83)
T ss_dssp HHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHhCCCCeeEEE
Confidence 478999999999999987
No 43
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=33.48 E-value=10 Score=30.35 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=25.7
Q ss_pred CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEe
Q psy7295 13 NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLR 53 (165)
Q Consensus 13 g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~ 53 (165)
|..+..++.|||+++|+....|||.-... ..++++||+.
T Consensus 207 gv~~~~~~~Gel~~~g~~~~~g~~~TGDl--g~~d~~g~~~ 245 (358)
T 4gs5_A 207 GIQYGVDERGCLHISGAVTNGQTVQTNDL--VEIHGNAFQW 245 (358)
T ss_dssp TCEEEECTTSEEEEESGGGTTCCEEEEEE--EEECSSEEEE
T ss_pred CeEEEecCcCceEEecccccCcceecCCc--cccccCceEE
Confidence 34455678899999999888888753322 2334566654
No 44
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=31.25 E-value=67 Score=19.32 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=15.4
Q ss_pred hHHHHHHHhcCCChHHhH
Q psy7295 85 PSEIEDFLTTHPDILEAY 102 (165)
Q Consensus 85 ~~eIE~~l~~~~~v~~a~ 102 (165)
..++++.|.++|.|.++.
T Consensus 15 ~~~~~~~l~~~peV~~~~ 32 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVH 32 (83)
T ss_dssp HHHHHHHHTTCTTEEEEE
T ss_pred HHHHHHHHhCCCCeEEEE
Confidence 368889999999999976
No 45
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=25.52 E-value=40 Score=21.73 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.4
Q ss_pred cEEEEECCCCCccCCC
Q psy7295 4 NIVKVVDSDNRMVPYG 19 (165)
Q Consensus 4 ~~v~vvd~~g~~~~~g 19 (165)
..++|+|.+|+|++.-
T Consensus 3 ~~v~V~d~~GkPV~gA 18 (82)
T 3e8v_A 3 GSVLVTDAEGQPVADA 18 (82)
T ss_dssp EEEEEECTTSCBCTTC
T ss_pred EEEEEEcCCCCCCCCC
Confidence 5789999999998743
No 46
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=22.97 E-value=1.1e+02 Score=19.94 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=13.5
Q ss_pred hHHHHHHHhcCCChHHhH
Q psy7295 85 PSEIEDFLTTHPDILEAY 102 (165)
Q Consensus 85 ~~eIE~~l~~~~~v~~a~ 102 (165)
..+|++.+.++|+|.++-
T Consensus 12 ~~~I~~~l~~~~gV~~vh 29 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPH 29 (107)
T ss_dssp HHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHHHcCCCccccE
Confidence 356788888889888754
No 47
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=22.08 E-value=46 Score=16.56 Aligned_cols=15 Identities=33% Similarity=0.756 Sum_probs=10.8
Q ss_pred EEChHHHHHHHhcCC
Q psy7295 82 NIYPSEIEDFLTTHP 96 (165)
Q Consensus 82 ~v~~~eIE~~l~~~~ 96 (165)
.++|.+||+++..-|
T Consensus 12 mlspddi~qw~s~dp 26 (28)
T 2b3g_B 12 MLSPDDIEQWFTEDP 26 (28)
T ss_dssp GCCHHHHHHHHHC--
T ss_pred hcChHHHHHHhhcCC
Confidence 368999999987755
No 48
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=21.88 E-value=69 Score=23.23 Aligned_cols=19 Identities=26% Similarity=0.586 Sum_probs=17.0
Q ss_pred hHHHHHHHhcCCChHHhHh
Q psy7295 85 PSEIEDFLTTHPDILEAYV 103 (165)
Q Consensus 85 ~~eIE~~l~~~~~v~~a~v 103 (165)
-.|+++.|.++++|..|-|
T Consensus 92 egELartI~~i~~V~~ARV 110 (171)
T 1yj7_A 92 EQDIERLLSKIPGVIDCSV 110 (171)
T ss_dssp HHHHHHHHTTSTTEEEEEE
T ss_pred HHHHHHHHHcCCCeeEEEE
Confidence 5689999999999999985
No 49
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=20.18 E-value=85 Score=17.71 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=14.3
Q ss_pred EEEChHHHHHHHhcCCC
Q psy7295 81 ENIYPSEIEDFLTTHPD 97 (165)
Q Consensus 81 ~~v~~~eIE~~l~~~~~ 97 (165)
.+++|.|||+.-.+.|.
T Consensus 18 vrlypdeiealksrvpa 34 (53)
T 2kke_A 18 VRLYPDEIEALKSRVPA 34 (53)
T ss_dssp EEECHHHHHHHHTTCCS
T ss_pred EEeChhHHHHHHhcCCC
Confidence 57999999998777764
Done!