RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7295
(165 letters)
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 195 bits (499), Expect = 1e-62
Identities = 66/157 (42%), Positives = 91/157 (57%), Gaps = 23/157 (14%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
VK+VD D VP G+ GE+ +RGY M Y+ + E T E + D WL TGD + +DG+
Sbjct: 184 VKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGY 243
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+VGRIKD+IIRGGENIYP+EIE+ L THP + EA
Sbjct: 244 LRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEA-----------------------A 280
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ DER+GE + A + L ++LTE+EL + +G+
Sbjct: 281 VVGVPDERLGEVVAAFVVLKPGATLTEEELIAFCRGR 317
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 183 bits (466), Expect = 1e-55
Identities = 70/158 (44%), Positives = 95/158 (60%), Gaps = 24/158 (15%)
Query: 6 VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
VK+VD + VP G+QGEL RGY M YW + EKT E + D W+ TGD V+ ++G
Sbjct: 382 VKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEG 441
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+ ++VGRIKD+IIRGGENIYP EIE+FL THP I + Q
Sbjct: 442 YVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDV---------------Q------- 479
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ DE+ GEE+ A I L ++LTE+++R + +GK
Sbjct: 480 -VVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGK 516
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 151 bits (383), Expect = 8e-44
Identities = 68/157 (43%), Positives = 88/157 (56%), Gaps = 23/157 (14%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
VKVVD D VP G+ GEL RGY M YW N E T E + ED W+ TGD + + G+
Sbjct: 384 VKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGY 443
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+VGR KD+IIRGGENIYP EIE+FL THP + +
Sbjct: 444 VRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQ----------------------- 480
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V+G+ DE+ GEEI A +RL + +E+ELR + K +
Sbjct: 481 VFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKAR 517
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 140 bits (355), Expect = 4e-41
Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 24/157 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V++VD D R +P G+ GE+++RG M YW E T E L D WL TGD L +DG+
Sbjct: 180 VRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR-DGWLHTGDLGYLDEDGY 238
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+V R KD+II GGENIYP+E+E+ L HP + +
Sbjct: 239 LYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADV-----------------------A 275
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ DE GE + A + L ++L +EL + + +
Sbjct: 276 VIGVPDEEWGEAVVAVVVLRPGATLDAEELIAFCRER 312
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 136 bits (345), Expect = 1e-39
Identities = 58/155 (37%), Positives = 82/155 (52%), Gaps = 24/155 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V ++D D R +P GQ+GE++IRG Y N E +E D W RTGD L +DG+
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAF-RDGWFRTGDLGYLDEDGY 240
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+ GRIK+LI RGGE I P E+E+ L HP + EA
Sbjct: 241 LFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEA-----------------------V 277
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
V+G+ DE GEE+ A++ L +S +T +ELR + +
Sbjct: 278 VFGVPDELYGEEVAAAVVLRADSKVTIEELRDFAR 312
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 138 bits (349), Expect = 5e-39
Identities = 63/159 (39%), Positives = 83/159 (52%), Gaps = 25/159 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V++VD D V G+ GE+ +RG M YW E T E ED WLRTGD + +DG+
Sbjct: 357 VRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGY 416
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+VGR+KDLII GGENIYP EIE L HP + EA
Sbjct: 417 LYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEA-----------------------A 453
Query: 126 VYGIRDERMGEEIGASIRLTE--NSSLTEDELRGYFKGK 162
V G+ DER GE + A + L ++ LT +ELR + + +
Sbjct: 454 VVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKR 492
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 137 bits (348), Expect = 7e-39
Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 26/159 (16%)
Query: 6 VKVVDSDNRMVP--YGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
++VD D +P G+ GE+++RG M YW E T E + + WL TGD + +D
Sbjct: 350 ARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDED 408
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
G+ + RIKD+II GGENIYP E+ED L HP + E
Sbjct: 409 GYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEV---------------------- 446
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ DE+ GE A + L ++L ELR + +G+
Sbjct: 447 -AVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGR 484
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 136 bits (346), Expect = 7e-39
Identities = 61/153 (39%), Positives = 84/153 (54%), Gaps = 24/153 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
VK+VD + +P G+ GEL++RG M YW E+T E+L D WLRTGD + +DG+
Sbjct: 306 VKIVDDEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVL-TDGWLRTGDIGYMDEDGY 364
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+V R KD+II GG N+YP EIE+ L +HP +LEA
Sbjct: 365 FYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEA-----------------------A 401
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
V G+ D GE + A + L E +SLTE+EL +
Sbjct: 402 VVGVPDPYRGEAVKAFVVLKEGASLTEEELIAF 434
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 131 bits (331), Expect = 1e-36
Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 23/159 (14%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+++VD VP G+ GELL RG + Y+ E +D + RTGD + DG+
Sbjct: 320 IRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGY 379
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
VVGRIKD I RGGE I P EIE+ L +HP + +A
Sbjct: 380 YRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADA-----------------------A 416
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
V G+ DE +GE I A + ++ T ELR + + + +
Sbjct: 417 VVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLREQGL 455
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 129 bits (326), Expect = 4e-36
Identities = 56/157 (35%), Positives = 75/157 (47%), Gaps = 24/157 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V++VD D VP G++GEL +RG L Y + T+ +D W RTGD L DG+
Sbjct: 273 VRIVDDDGNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAFT-DDGWFRTGDLGRLDADGY 331
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+ GR KD+IIRGGENI EIED L HP + E
Sbjct: 332 LRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEV-----------------------A 368
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V + DER+GE + A + +SLT EL + +
Sbjct: 369 VVAMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQ 405
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 122 bits (309), Expect = 2e-34
Identities = 55/151 (36%), Positives = 76/151 (50%), Gaps = 23/151 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V+VVD + + +P G+ GEL++RG M YW N +T ED W RTGD L ++G+
Sbjct: 180 VRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGY 239
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+ GR KDLI GGEN+YP+E+E L HP + EA
Sbjct: 240 LYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEA-----------------------A 276
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELR 156
V G+ DE GE I A + L + +EL+
Sbjct: 277 VVGVPDEDRGERIVAFVVLRPGADALAEELK 307
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 125 bits (316), Expect = 2e-34
Identities = 55/153 (35%), Positives = 77/153 (50%), Gaps = 23/153 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
K+V+ VP G+ GELL+RG M Y+ + E T + D WL TGD L ++G+
Sbjct: 348 NKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGY 407
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+V R KD+ I GG N+YP+E+E+ L HP + EA
Sbjct: 408 LYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEA-----------------------A 444
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
V G+ DER+GE A + L + LTE+EL Y
Sbjct: 445 VIGVPDERLGEVGKAYVVLKPGAELTEEELIAY 477
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 121 bits (305), Expect = 2e-33
Identities = 42/100 (42%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL--RTGDQFVLTKD 63
VKV+D + VP G+ GEL IRG Y + E T E ED W RTGD +D
Sbjct: 313 VKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDED 372
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
G+ ++GR D + GE I P EIE L HP + EA V
Sbjct: 373 GYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 120 bits (303), Expect = 1e-32
Identities = 53/158 (33%), Positives = 72/158 (45%), Gaps = 24/158 (15%)
Query: 6 VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
K+VD D + + ++GEL ++G M Y N E TKE + ED WL TGD +DG
Sbjct: 327 AKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDG 386
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+V R K+LI G + P+E+E L HP + +A
Sbjct: 387 NFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADA----------------------- 423
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V GI DE GE A + L S LTE E++ Y K
Sbjct: 424 AVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKK 461
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 116 bits (294), Expect = 1e-31
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 25/159 (15%)
Query: 6 VKVVDSDNR-MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
V++VD D + G+ GE+ +RG YW E T E ED W +TGD V+ +DG
Sbjct: 269 VRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDG 328
Query: 65 FGSVVGRIKDLIIR-GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
+ ++GR D II+ GG + EIE+ L HP + E
Sbjct: 329 YYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEV---------------------- 366
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ D GE + A + ++LT ELR + + K
Sbjct: 367 -AVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREK 404
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 116 bits (293), Expect = 2e-31
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 27/160 (16%)
Query: 6 VKVVDSDNRMVPYGQQGELLIR---GYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
V++VD D R VP G+ GEL++R + Y+G E T + + W TGD+ +
Sbjct: 256 VRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDE 314
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
DGF V R KD I R GENI E+E + HP + EA
Sbjct: 315 DGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEA--------------------- 353
Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V + E +E+ A + L +L + L + + +
Sbjct: 354 --AVVAVPSELGEDEVKAVVVLRPGETLDPEALLEFCRDR 391
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 117 bits (295), Expect = 2e-31
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 26/156 (16%)
Query: 5 IVKVVDSDN--RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
V++VD ++ +P G++GELL+RG YW E+T + D W RTGD V+ +
Sbjct: 399 EVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEE 457
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
DGF +V RIK+LII GG N+YP+E+E+ L HP + +A
Sbjct: 458 DGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDA--------------------- 496
Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
V G+ E EE+ A++ L ++L + LR Y
Sbjct: 497 --AVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAY 530
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 112 bits (283), Expect = 9e-30
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 23/156 (14%)
Query: 5 IVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
+ KV+D D +P G+ GEL ++G M YW E T EIL D WL+TGD ++ +DG
Sbjct: 388 LCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDG 447
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+ +V R KD+I+ G N+YP+E+ED L P +L QC+
Sbjct: 448 YMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVL------------------QCA---- 485
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
G+ DE+ GE I + + +LT++++ + +
Sbjct: 486 -AIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMR 520
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 110 bits (276), Expect = 8e-29
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 24/155 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V ++D D R V G+ GE+ +RG M YW E+T E D WL TGD +DGF
Sbjct: 350 VALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGF 408
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+V R KD+I+ GG N++P E+ED L HP + +
Sbjct: 409 YYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQV-----------------------A 445
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
V G+ DE+ GE + A + L +++ EL+ + K
Sbjct: 446 VIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVK 480
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 108 bits (271), Expect = 3e-28
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 4 NIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
+++D + V G+ GELLIRG M YW + T+E + +D WL TGD + +D
Sbjct: 326 CDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDED 384
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
GF +VGR K++II GGENIYP E+E + D+ E
Sbjct: 385 GFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEV---------------------- 422
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
V G + + GE A I +S L E ++
Sbjct: 423 -AVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVI 454
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 105 bits (264), Expect = 3e-27
Identities = 40/83 (48%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII-RGG 80
GE+L+RG M Y+ N E T E L ED WL TGD L +DGF + R KDLI+ GG
Sbjct: 283 GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGG 342
Query: 81 ENIYPSEIEDFLTTHPDILEAYV 103
+NI P IE+ L P I +A V
Sbjct: 343 KNIAPQPIENALKASPYISQAVV 365
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 105 bits (263), Expect = 6e-27
Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 24/154 (15%)
Query: 7 KVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFG 66
KV+D D +P G++GEL I+G M YW E T E L + W +TGD V+ DGF
Sbjct: 398 KVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFV 457
Query: 67 SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCV 126
+V R KDLII G N+YP+EIED + HP + C+
Sbjct: 458 RIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKV------------------ANCA-----A 494
Query: 127 YGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
G+ DER GE + + + + L+ +EL+ Y K
Sbjct: 495 IGVPDERSGEAVKLFV-VARDPGLSVEELKAYCK 527
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 104 bits (261), Expect = 1e-26
Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 26/159 (16%)
Query: 6 VKVVDSDNRMVPY-GQQ-GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
+++VD + +P+ G+ GEL++RG Y+ + EKT+E L D W RTGD V+ +D
Sbjct: 352 LRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEE-LTRDGWFRTGDVAVIDED 410
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
G+ + R KD+I GGE I E+E+ L HP + EA
Sbjct: 411 GYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEA---------------------- 448
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ E+ GE A + L + +TE+EL + K
Sbjct: 449 -AVVGVPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKK 486
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 103 bits (259), Expect = 2e-26
Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 24/154 (15%)
Query: 6 VKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
K+VD +P Q GEL +RG M Y N E T E + +D WL TGD +DG
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDG 400
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+ +V R+K+LI G + P+E+E L +HP+I +A V IP
Sbjct: 401 YLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAV-----------------IP-- 441
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
DE GE A + S L+EDE+ +
Sbjct: 442 ----YPDEEAGEIPMAFVVRQPGSELSEDEVMQF 471
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 102 bits (256), Expect = 4e-26
Identities = 44/97 (45%), Positives = 50/97 (51%)
Query: 7 KVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFG 66
+VVD P G GELL+RG YW + T D W RTGD DGF
Sbjct: 318 RVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFF 377
Query: 67 SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
VV R KD+ I GGEN+YP+EIE L HP I E V
Sbjct: 378 WVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAV 414
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 100 bits (252), Expect = 4e-26
Identities = 47/154 (30%), Positives = 66/154 (42%), Gaps = 28/154 (18%)
Query: 8 VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE-----DNWLRTGDQFVLTK 62
VVD D G+ GEL+ RG M YW + E T E L + L TGD + +
Sbjct: 184 VVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDE 243
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
+G+ VGR D+I G + P+EIE+ + HP + EA
Sbjct: 244 EGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEA--------------------- 282
Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
V G+ D +G+ I A + + SL E EL
Sbjct: 283 --AVIGVPDPLLGQAIVAVVVSADGESLDEKELL 314
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 100 bits (251), Expect = 1e-25
Identities = 48/144 (33%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 19 GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR 78
Q GE+L+RG L Y T L ED W TGD L +G+ V+GR DLII
Sbjct: 258 PQDGEILVRGPSLFLGYLPQGGLTPP-LDEDGWFHTGDLGYLDAEGYLYVLGRRDDLIIS 316
Query: 79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEI 138
GGENIYP EIE L HP + EA V G+ D+ G+
Sbjct: 317 GGENIYPEEIEAVLLQHPAVEEA-----------------------AVVGVPDDEWGQRP 353
Query: 139 GASIRLTENSSLTEDELRGYFKGK 162
A + + ++ +EL+ + K
Sbjct: 354 VAFVV-PNDDPVSVEELQAFLADK 376
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 100 bits (252), Expect = 2e-25
Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+KVVD + +P G +GE RG + Y E T L E+ W +GD + + G+
Sbjct: 366 IKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGY 425
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+ GR KD+I+RGGENI E+ED L HP I +A C
Sbjct: 426 IKITGRKKDIIVRGGENISSREVEDILLQHPKIHDA-----------------------C 462
Query: 126 VYGIRDERMGEEIGASIRLTEN-SSLTEDELRGYFKGKAI 164
V + DER+GE A + L SLT +E+ +F K +
Sbjct: 463 VVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRV 502
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 98.2 bits (245), Expect = 2e-24
Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 25/151 (16%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+K+VD D VP G+ GEL ++G ML YW E T E++ +D WL TGD V+ ++GF
Sbjct: 389 IKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGF 447
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+V R KD+I+ G N+YP+EIED + HP +LE
Sbjct: 448 LRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEV-----------------------A 484
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELR 156
G+ E GE + + + ++ SLTE+EL
Sbjct: 485 AVGVPSEVSGEAVKIFV-VKKDPSLTEEELI 514
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 97.3 bits (243), Expect = 2e-24
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 30/162 (18%)
Query: 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
L I K D +VP ++GE++++G Y E+ T+E +D W +TGD L
Sbjct: 316 CELKIEK----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYL 370
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
++GF V+ R DLII GGENIYP+EIE+ L +HP + EA V
Sbjct: 371 DEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVV---------------- 414
Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
G+ D++ G+ A + + +TE+ELR + + K
Sbjct: 415 -------GVPDDKWGQVPVAFVVKSG--EVTEEELRHFCEEK 447
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 97.3 bits (243), Expect = 3e-24
Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 27/157 (17%)
Query: 2 SLNIVKVVDSD-NRMVPY-GQQ-GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQF 58
L V VVD + + VP G+ GE+++RG M Y+ N E T+E W +GD
Sbjct: 351 GLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLA 409
Query: 59 VLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQ 118
V+ DG+ + R KD+II GGENI E+E L HP +LEA
Sbjct: 410 VVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEA----------------- 452
Query: 119 CSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDEL 155
V DE+ GE A + L +S+TE+EL
Sbjct: 453 ------AVVARPDEKWGETPCAFVVLKPGASVTEEEL 483
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 96.6 bits (241), Expect = 7e-24
Identities = 39/99 (39%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
VK+ D GE+L+RG M Y+ N E T E ED W RTGD L +DG+
Sbjct: 415 VKIAD----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGY 464
Query: 66 GSVVGRIKDLII-RGGENIYPSEIEDFLTTHPDILEAYV 103
+ GR K+LI G+NI P IE L P I + V
Sbjct: 465 LVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICV 503
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 95.0 bits (237), Expect = 2e-23
Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 24/149 (16%)
Query: 7 KVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFG 66
+VVD D V G+ GE++ R ML YW + EKT E W +GD V+ ++G+
Sbjct: 353 RVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYI 411
Query: 67 SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCV 126
+VV R KD+I GGEN+ E+E+ L THP + E V
Sbjct: 412 TVVDRKKDMIKTGGENVASREVEEALYTHPAVAEV-----------------------AV 448
Query: 127 YGIRDERMGEEIGASIRLTENSSLTEDEL 155
G+ D + E + A + +++TEDEL
Sbjct: 449 IGLPDPKWIEAVTAVVVPKAGATVTEDEL 477
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 94.7 bits (236), Expect = 2e-23
Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKE-ILGEDNWLRTGDQFVLTKDG 64
VK+VD D V G+ GEL +RG + YW EKT+E +GE W RTGD++ +DG
Sbjct: 341 VKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETFVGE--WTRTGDKYYRDEDG 398
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+ GR D++ G + P E+ED L HP +LEA V
Sbjct: 399 YYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAV 437
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 93.3 bits (232), Expect = 9e-23
Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+VVD + VP G+ GE++ R M YW N E T E W +GD ++G+
Sbjct: 356 ARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGY 414
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
VV R KD+II GGENIY +E+E+ L +HPDI+E V
Sbjct: 415 VWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAV 452
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 92.0 bits (229), Expect = 3e-22
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 10 DSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVV 69
D D +P G+ GE+ IRG M YW ++T +++ D + RTGD V+ + G+ +V
Sbjct: 395 DDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIV 454
Query: 70 GRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGI 129
R KD+I+ G N+YP+EIE+ + +HP +LE G+
Sbjct: 455 DRKKDMILVSGFNVYPNEIEEVVASHPGVLEV-----------------------AAVGV 491
Query: 130 RDERMGEEIGASIRLTENSSLTEDELRGYFK 160
DE GE + + + ++ +LTE++++ + K
Sbjct: 492 PDEHSGEAVKLFV-VKKDPALTEEDVKAFCK 521
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 91.5 bits (227), Expect = 3e-22
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 24/157 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+++ D R +P +GE+ +RG YW + EKT E +W R+GD L ++GF
Sbjct: 330 IRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGF 388
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+ R KD+II GGENI SE+E + P++ EA
Sbjct: 389 LYLTDRKKDMIISGGENIASSEVERVIYELPEVAEA-----------------------A 425
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ D+R GE I A + L ++LT + L + + +
Sbjct: 426 VIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQR 462
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 91.7 bits (228), Expect = 3e-22
Identities = 55/162 (33%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V+VVD+D +P GQ G L +RG N Y + D W TGD + DG+
Sbjct: 377 VRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGDLARIDADGY 434
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+ GR KD+IIRGGENI EIE L HP I Q +I Y
Sbjct: 435 IRISGRSKDVIIRGGENIPVVEIEALLYRHPAI------------------AQVAIVAY- 475
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK--AIQ 165
DER+GE A + SL +E+ + K + A Q
Sbjct: 476 ----PDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQ 513
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 91.5 bits (228), Expect = 4e-22
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 6 VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEI------LGEDNWLRTGD-Q 57
V++VD + R +P G+ GE+ +RG YW E T E E WLRTGD
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425
Query: 58 FVLTKDG--FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA 101
F+ DG + V GR+KDLII G N YP +IE + L
Sbjct: 426 FLH--DGELY--VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRP 467
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 90.7 bits (225), Expect = 6e-22
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 25/152 (16%)
Query: 5 IVKVVDSDNRMVPYGQQGELLI-RGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
IV++ S + +P G++GEL++ Y + T E L +D W RT D V+
Sbjct: 331 IVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKL-QDGWYRTSDVAVVDPS 389
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
G ++GR+ D+II GGENI+PSE+E L P + E
Sbjct: 390 GTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEV---------------------- 427
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDEL 155
V G+ DER G+ + A + E +L+ D L
Sbjct: 428 -VVIGLPDERWGQSVTACVVPREGETLSADAL 458
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 90.5 bits (225), Expect = 8e-22
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V++ D + R +P G+ GE+ + G Y+ N E + D W RTGD L GF
Sbjct: 351 VQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGF 409
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+ GR D+ I GG N+YP EIE+ L THP + E
Sbjct: 410 LYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEV-----------------------A 446
Query: 126 VYGIRDERMGEEIG-ASIRLTENSSLTEDELRGYFKGK 162
V G+ D G E+G A + + + E EL + GK
Sbjct: 447 VLGVPDPVWG-EVGVAVCVARDGAPVDEAELLAWLDGK 483
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 90.1 bits (224), Expect = 1e-21
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
++VD R VP G G+L +RG YW EKT+ L D WLRTGD+F DG+
Sbjct: 271 ARLVDESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTLR-DGWLRTGDRFSRDADGW 329
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
GR D+I G+ + P E+E L HP + EA V
Sbjct: 330 YRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAV 367
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 89.6 bits (222), Expect = 2e-21
Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 24/150 (16%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+++V SD +P G GE+ +RG + Y G+ T D WLRTGD L+ G
Sbjct: 365 IRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGD 423
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
S+ GRIK+LI RGGE I P +E L +HP+++EA
Sbjct: 424 LSIRGRIKELINRGGEKISPERVEGVLASHPNVMEA-----------------------A 460
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDEL 155
V+G+ D+ GE + A I E++ T +EL
Sbjct: 461 VFGVPDQLYGEAVAAVIVPRESAPPTAEEL 490
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 88.9 bits (221), Expect = 2e-21
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 7 KVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN---WLRTGDQFVLTK 62
+V+D +P G++GE+++RG YW E T E E + + RTGD + +
Sbjct: 263 RVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDE 322
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
+G+ + R+K +I G ++P+E+E L HP +LE
Sbjct: 323 EGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEV--------------------- 361
Query: 123 GYCVYGIRDERMGEEIGASIRLTEN--SSLTEDELRGYFKG 161
CV G D R GE + A + L + +TE+++ + +
Sbjct: 362 --CVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRE 400
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 89.1 bits (221), Expect = 3e-21
Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 27/143 (18%)
Query: 22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSV--VGRIKDLIIRG 79
G +L RG ML YWG +T +L D WL TGD + D G++ +GR D I G
Sbjct: 386 GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGD--IGWIDKAGNLWLIGRSNDRIKTG 443
Query: 80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIG 139
GEN+YP E+E L+ HP + V G+ D R+ E +
Sbjct: 444 GENVYPEEVEAVLSQHPGVASV-----------------------VVVGVPDSRLTEMVV 480
Query: 140 ASIRLTENSSLTEDELRGYFKGK 162
A +RL + +++E K
Sbjct: 481 ACVRLRDGWIWSDNEKENAKKNL 503
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 88.2 bits (219), Expect = 5e-21
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 26/156 (16%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCN---MLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
++ D NR +P G+ GE+ I+G Y+ + + T ++L D WL TGD + +
Sbjct: 351 AEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE 410
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
+GF V R ++I RGGEN+ E+E+ + THP I +
Sbjct: 411 EGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDI--------------------- 449
Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
V GI+D E I A + L E +L+E+E +
Sbjct: 450 --VVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAF 483
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 87.8 bits (218), Expect = 7e-21
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 25/154 (16%)
Query: 6 VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
K+ D + ++P G +GE+++R + YW E T E L D WL TGD + + G
Sbjct: 398 FKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQG 456
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
F +GR K+++ G +++PSE+E L HP +L G
Sbjct: 457 FLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVL-----------------------GS 493
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
V G D G+ A ++L + LT L+ +
Sbjct: 494 AVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAW 527
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 87.7 bits (218), Expect = 7e-21
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 26/163 (15%)
Query: 3 LNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
L V+++D D +P G+ G + Y + EKT W+ GD L +
Sbjct: 322 LGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDE 381
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
DG+ + R D+II GG NIYP EIE+ L THP + +
Sbjct: 382 DGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADV--------------------- 420
Query: 123 GYCVYGIRDERMGEEIGASIRL---TENSSLTEDELRGYFKGK 162
V+G+ DE MGE + A ++ + EL + +G+
Sbjct: 421 --AVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGR 461
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 85.6 bits (212), Expect = 4e-20
Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V+VVD+D V G+ GELL RG + Y+ E D + R+GD DG+
Sbjct: 370 VRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGY 429
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
V GR+KD I RGGE I E+E+ L HP + +A
Sbjct: 430 LVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDA-----------------------A 466
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
+ + DE +GE+ A I + + L +LR +
Sbjct: 467 LVAMPDELLGEKSCAFI-VVKEPPLRAAQLRRF 498
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 85.6 bits (212), Expect = 4e-20
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
GE++++G M Y E T + W TGD L +GF V+GR DLII GGE
Sbjct: 293 GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGE 351
Query: 82 NIYPSEIEDFLTTHPDILEAYVS 104
NIYP EIE L HP I EA V
Sbjct: 352 NIYPEEIETVLYQHPGIQEAVVV 374
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 85.3 bits (211), Expect = 5e-20
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%)
Query: 10 DSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVV 69
D ++ G+ GEL I+G M YW E+T +++ D WL TGD + + GF +V
Sbjct: 397 DDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIV 456
Query: 70 GRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGI 129
R KD+I+ G N+YP+EIED + P +LE G+
Sbjct: 457 DRKKDMILVSGFNVYPNEIEDVIAMMPGVLEV-----------------------AAVGV 493
Query: 130 RDERMGEEIGASIRLTENSSLTEDELRGY 158
DE+ GE + I + ++ +LT ++++ +
Sbjct: 494 PDEKSGEIVKVVI-VKKDPALTAEDVKAH 521
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 85.0 bits (211), Expect = 8e-20
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 27/157 (17%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
VK++D + VP G G + + Y + K+I D L +GD +DG
Sbjct: 387 VKILDENGNEVPRGVVGRIFVGNGFPFEGYTDG--RDKQI--IDGLLSSGDVGYFDEDGL 442
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
V GR D+I+ GGEN++P+E+ED L HPD++EA V
Sbjct: 443 LFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVI--------------------- 481
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
G+ DE G+ + A + ++L ED ++ Y +
Sbjct: 482 --GVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDN 516
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 84.2 bits (209), Expect = 1e-19
Identities = 53/153 (34%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 6 VKVVDSDN-RMVPY-GQ-QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
V V+D D + VP G+ GE++ RG M Y N + T+E W TGD VL
Sbjct: 370 VTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHP 428
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
DG+ + R KD+II GGENI E+ED L HP +L A V + P
Sbjct: 429 DGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAV---------------VAKP 473
Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDEL 155
D + GE A + L + +S TE+E+
Sbjct: 474 --------DPKWGEVPCAFVELKDGASATEEEI 498
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 83.3 bits (206), Expect = 3e-19
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 27/151 (17%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
++++D D R VP G+ G + +R + TK+ D ++ +GD L ++G
Sbjct: 376 IRILDQDFREVPTGEVGTIFVRN--DTQFDGYTSGSTKDF--HDGFMASGDVGYLDENGR 431
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
VVGR ++I+ GGEN+YP E+E L THPD+ EA
Sbjct: 432 LFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEA-----------------------A 468
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELR 156
V G+ DE+ G+ + A + L +S T + L+
Sbjct: 469 VIGVDDEQYGQRLAAFVVLKPGASATPETLK 499
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 82.7 bits (204), Expect = 5e-19
Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 29/161 (18%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED--NWLRTGDQFVLTKD 63
VKV+D++ + G+ G LL+RG N Y K + D W TGD +
Sbjct: 375 VKVIDANGAKLSQGETGRLLVRGCSNFGGYL----KRPHLNSTDAEGWFDTGDLAFQDAE 430
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
G+ + GR KD+IIRGGENI EIE+ L HP + Q +I
Sbjct: 431 GYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAV------------------AQVAIVA 472
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
Y DER+GE A + +L + + K + +
Sbjct: 473 Y-----PDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKV 508
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 82.6 bits (205), Expect = 5e-19
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 6 VKVVDSDN-RMVPYGQQGELLIRGYCNMLR-YWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
++V D + +P G+ G + ++G N+ + YW EKT E D + TGD + +
Sbjct: 332 LRVTDPETGAELPPGEIGMIEVKG-PNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDER 390
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
G+ +VGR KDLII GG N+YP E+E + P ++E+ V
Sbjct: 391 GYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAV 430
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 82.3 bits (204), Expect = 6e-19
Identities = 50/158 (31%), Positives = 66/158 (41%), Gaps = 29/158 (18%)
Query: 6 VKVVDSDN-----RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
V+VV D+ R + G L I G N+ + K + ED WL TGD +
Sbjct: 397 VRVVILDDAGRYLRDCAVDEVGVLCIAG-PNVFSGYLEAAHNKGLWLEDGWLNTGDLGRI 455
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
DG+ + GR KDLIIRGG NI P+ IE+ L HP + A
Sbjct: 456 DADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALA------------------- 496
Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
G D GE A ++L +S TE EL +
Sbjct: 497 ----AAVGRPDAHAGELPVAYVQLKPGASATEAELLAF 530
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 82.1 bits (203), Expect = 8e-19
Identities = 38/96 (39%), Positives = 48/96 (50%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V+VVD V G+ G LL RG Y+ E + + TGD LT +G+
Sbjct: 363 VRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGY 422
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA 101
VVGR KD I RGGE I EIE+ L HP + +A
Sbjct: 423 IVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDA 458
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 78.9 bits (195), Expect = 6e-18
Identities = 39/101 (38%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 6 VKVVD-----SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
V+V + R G+ G L IRG N+ + N+ ED WL TGD +
Sbjct: 186 VRVAKLDAGGALGRDCAPGEVGVLAIRG-PNVFPGYLNDAHNAGARLEDGWLNTGDLGRI 244
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA 101
DG+ + GR KDLIIRGG NI P IE+ L HP + A
Sbjct: 245 DADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALA 285
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 79.3 bits (196), Expect = 6e-18
Identities = 51/154 (33%), Positives = 63/154 (40%), Gaps = 27/154 (17%)
Query: 5 IVKVVDSDNRMVPYGQQGELLIR--GYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
V VVD R VP G+ GE+ ++ L YW N E T D WL TGD
Sbjct: 270 EVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD-WLLTGDLGRRDA 328
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
DG+ GR D+I G I P+EIE+ L HP +LEA
Sbjct: 329 DGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEA--------------------- 367
Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
V G+ D GE + A + L E DEL
Sbjct: 368 --AVVGVPDPERGEIVKAFVVLAEGVE-PSDELA 398
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 79.0 bits (195), Expect = 8e-18
Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 27/154 (17%)
Query: 5 IVKVVDSDNRMVPYGQQGELLIRG---YCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
+VVD ++ +P G+ GELL+R + Y+G EKT E + W TGD+ V
Sbjct: 353 EARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRD 411
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
DG+ V RIKD I R GENI E+E L +HP + A
Sbjct: 412 ADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAA-------------------- 451
Query: 122 PGYCVYGIRDERMGEEIGASIRLTENSSLTEDEL 155
V+ + E +E+ A++ L + ++L L
Sbjct: 452 ---AVFPVPSELGEDEVMAAVVLRDGTALEPVAL 482
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 78.8 bits (195), Expect = 9e-18
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 19 GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLI-I 77
+ GE+LIR M Y+ + EKT E ED WL TGD+ + +DGF + GR+K+L
Sbjct: 340 SEDGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKT 399
Query: 78 RGGENIYPSEIEDFLTTHPDI 98
G+ + P+ IE+ L+ +P +
Sbjct: 400 SKGKYVAPAPIENLLSANPHV 420
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 78.9 bits (195), Expect = 1e-17
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD-QFVLTKDG 64
+++VD D ++P G+ G L +RG Y+ N E E ED W RTGD F+ DG
Sbjct: 385 IRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL--HDG 442
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
++ GR KD+II G N Y EIE + P + ++
Sbjct: 443 RLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFT 481
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 78.5 bits (193), Expect = 1e-17
Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 28/164 (17%)
Query: 1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLR-YWGNEEKTKEILGEDNWLRTGDQFV 59
+ L++V + D +++P G+ GEL IRG N+ R YW E++ E D +L TGD
Sbjct: 374 IELDVVSL-DDPTKVLPPGEVGELRIRG-PNVTRGYWNRPEESAEAFVGDRFL-TGDIGY 430
Query: 60 LTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQC 119
+ DG+ +V R KD+II GG N+YP IE + HP + E
Sbjct: 431 MDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEV------------------ 472
Query: 120 SIPGYCVYGIRDERMGEEIGASIRLTENSS-LTEDELRGYFKGK 162
V GI D+ GE A ++L + + DELR + GK
Sbjct: 473 -----IVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGK 511
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 77.4 bits (191), Expect = 3e-17
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 21 QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR-G 79
GE+ I G + Y EEKT+E + ED WL +GD L DGF + GRIK+LII G
Sbjct: 390 IGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAG 449
Query: 80 GENIYPSEIEDFLTTHPDIL 99
GEN+ P IE+ + I+
Sbjct: 450 GENVPPVPIEEAVKKELPII 469
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 77.3 bits (191), Expect = 4e-17
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 24/154 (15%)
Query: 6 VKVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
+K+VD + +P Q GE+ IRG M Y + E T + +D WL TGD + D
Sbjct: 367 LKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDD 426
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+V R+K+LI G + P+E+E L +HP I +A
Sbjct: 427 ELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADA----------------------- 463
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
V ++DE GE A + + S +TEDE++ +
Sbjct: 464 AVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQF 497
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 76.9 bits (190), Expect = 5e-17
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 7 KVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN---WLRTGDQFVLTK 62
+V+D + +P G+ GE+++ G YW E T E E + + RTGD + +
Sbjct: 369 RVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE 428
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
+G+ + R+K +I G ++P+E+E+ L HP I EA
Sbjct: 429 EGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEA--------------------- 467
Query: 123 GYCVYGIRDERMGEEIGASIRL 144
CV D R GE + A + L
Sbjct: 468 --CVIATPDPRRGETVKAVVVL 487
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 76.6 bits (188), Expect = 6e-17
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 6 VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
VK +D D R +P GEL +R C M Y+ N+E+T + ED WL TGD + DG
Sbjct: 372 VKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDG 431
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+V RIK+LI G + P+E+E L THP + +A V
Sbjct: 432 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 470
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 76.6 bits (189), Expect = 6e-17
Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 25/159 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V V D+D +P G+ G L+ RG Y+ + + + + +GD + DG+
Sbjct: 365 VWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGY 424
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+VVGR KD I RGGE I EIE+ L HP ++ A L+ S+
Sbjct: 425 ITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHA------------ALV---SME--- 466
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
DE MGE+ A + + E L +LR + + + I
Sbjct: 467 -----DELMGEKSCAFLVVKE--PLKAVQLRRFLREQGI 498
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 76.3 bits (188), Expect = 7e-17
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNML-RYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
++ VD D R +P G+ GE+ R N Y EK EI ++ +GD L DG
Sbjct: 335 LRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEI-DRGGFITSGDVGYLDADG 393
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+ + R +D++I GG NIYP+EIE L P + C+
Sbjct: 394 YLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGV------------------HDCA---- 431
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG 161
V+GI D GE + A + ++L E ++R K
Sbjct: 432 -VFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKA 467
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 76.2 bits (188), Expect = 7e-17
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCN----MLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
V ++D + +P G++G++ +R Y + EKT+ + D W TGD+ +
Sbjct: 260 VAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGD-WYLTGDRAIKD 318
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+DG+ VGR D+I G I P E+E L HP + EA V
Sbjct: 319 EDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAV 360
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 76.4 bits (188), Expect = 8e-17
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 7 KVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
KVVD S ++P G GEL I+G M Y N + T+ + +D WLRTGD +DG+
Sbjct: 386 KVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGY 445
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVS 104
+V R+K++I G I P+++E L +HP+I++A V+
Sbjct: 446 LYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVT 484
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 76.2 bits (188), Expect = 8e-17
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+++VD ++P G + I+G Y+ N E TK+ + D WL+TGD L ++G
Sbjct: 325 IRIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFL-RNGR 383
Query: 66 GSVVGRIKDLIIRGGENIYPSEIE 89
+ GR KD+II G+N YP +IE
Sbjct: 384 LVITGRAKDIIIVNGQNYYPHDIE 407
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 75.5 bits (186), Expect = 1e-16
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 6 VKVVDS-DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
V+ D D ++P G+ GE+ IR M Y N + T L +D + RTGD DG
Sbjct: 361 VRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
R+ D + GG + P+EIE L P + A V
Sbjct: 421 QFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQV 459
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 75.4 bits (186), Expect = 2e-16
Identities = 40/101 (39%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRG--YCNMLRYWGNEEKTKE-ILGEDNWLRTGDQFVLTK 62
V+ VD + VP G GEL++R L YW + E+ KE G W RTGD +
Sbjct: 352 VRRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR--WYRTGDWAERDE 408
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
DG+ + GR D+I G+ I P EIE L HP + EA V
Sbjct: 409 DGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAV 449
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 75.5 bits (185), Expect = 2e-16
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 24/140 (17%)
Query: 16 VPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDL 75
+P G+ GE++++G M YW E+T +L +D WL TGD + +DGF V R KD+
Sbjct: 398 LPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDM 456
Query: 76 IIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMG 135
I+ G N+YP E+E+ L H + E G+ D G
Sbjct: 457 IVASGFNVYPREVEEVLYEHEKVQEV-----------------------VTIGVPDPYRG 493
Query: 136 EEIGASIRLTENSSLTEDEL 155
E + A + L E + +E+EL
Sbjct: 494 ETVKAFVVLKEGTECSEEEL 513
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 74.4 bits (183), Expect = 3e-16
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 33/159 (20%)
Query: 7 KVVDSDNRMVPYGQQGELLIRGY--CNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
++VD VP G+ G L +RG C RY +E + + + D W TGD F +DG
Sbjct: 325 RIVDDQGNEVPRGEAGRLAVRGPTGC---RYLDDERQQEYV--RDGWNVTGDIFRQDEDG 379
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+ V R D+I+ G NI E+ED L THPD+ E C+
Sbjct: 380 YFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAE------------------CA---- 417
Query: 125 CVYGIRDERMGEEIGASIRLTEN---SSLTEDELRGYFK 160
V G+ DE G+ + A I L + + L + L+ + K
Sbjct: 418 -VIGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFVK 455
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 72.6 bits (179), Expect = 1e-15
Identities = 45/148 (30%), Positives = 57/148 (38%), Gaps = 26/148 (17%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN---WLRTGDQFVLTK 62
++D D R VP G++GEL+I G Y N EKT + +D W RTGD L
Sbjct: 283 ALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLED 342
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDI----------------LEAYVSEY 106
DG +GR I G I EIE L P + L A+V
Sbjct: 343 DGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGK 402
Query: 107 RLKLDFTGLLQQCS-------IPGYCVY 127
LD L ++ IP VY
Sbjct: 403 EGALDTKALKKELKKRLPPYMIPRRFVY 430
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 72.4 bits (178), Expect = 1e-15
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 28/160 (17%)
Query: 3 LNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED-NWLRTGDQFVLT 61
+ ++D D +P G+ G + G Y + KT E D W GD +
Sbjct: 335 FGDLHILDDDGAELPPGEPGTIWFEG-GRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVD 393
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
+DG+ + R +II GG NIYP E E+ L THP + +A
Sbjct: 394 EDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADA-------------------- 433
Query: 122 PGYCVYGIRDERMGEEIGASIRLTENSSLTED---ELRGY 158
V+G+ +E +GEE+ A ++ + EL +
Sbjct: 434 ---AVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAF 470
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 71.6 bits (175), Expect = 3e-15
Identities = 45/157 (28%), Positives = 64/157 (40%), Gaps = 27/157 (17%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V+++D +NR V G + + G RY K D TGD L G
Sbjct: 356 VRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGKAVV----DGMTSTGDMGYLDNAGR 411
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+VGR D+II GGEN+YP +E+ L HP + +
Sbjct: 412 LFIVGREDDMIISGGENVYPRAVENALAAHPAVADN-----------------------A 448
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ DER G + A + L S + +LR Y K +
Sbjct: 449 VIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDR 485
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 71.6 bits (176), Expect = 3e-15
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 5 IVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQ-FVLTKD 63
+++ + +P G + +RG M Y+ +EE L D WL TGD ++L D
Sbjct: 395 EIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRDEESQDV-LAADGWLDTGDLGYLL--D 451
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDI 98
G+ + GR KDLII G NI+P +IE P++
Sbjct: 452 GYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPEL 486
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 71.6 bits (176), Expect = 3e-15
Identities = 39/101 (38%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 6 VKVVDSDNRMVPYGQQ--GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
++VD D VP+ + GEL +RG Y + T D W RTGD V+ D
Sbjct: 304 TRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPD 363
Query: 64 GFGSVVGRIK-DLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
G +VGR DLI GG I EIE L HP + EA V
Sbjct: 364 GMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAV 404
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 70.0 bits (172), Expect = 1e-14
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V+VVD D +++P G + +RG + + + D WL TGD LT++G
Sbjct: 371 VRVVDEDGQVLPPRGVGVIELRGES-VTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGE 429
Query: 66 GSVVGRIKDLIIRGGENIYPSEIE 89
V GR+KD+II G NIYP++IE
Sbjct: 430 VVVCGRVKDVIIMAGRNIYPTDIE 453
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 69.2 bits (170), Expect = 2e-14
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 28/156 (17%)
Query: 5 IVKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN---WLRTGDQFVL 60
V++VD + +P G+ G +LI G M Y G+ EKT E++ + + W TGD+ L
Sbjct: 970 AVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
+DGF ++ R GGE + +E+ L L
Sbjct: 1030 DEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAK---ALGG------------------E 1068
Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
+ V + DE+ GE++ + L + +EL+
Sbjct: 1069 EVVFAVTAVPDEKKGEKL---VVLHTCGAEDVEELK 1101
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 68.5 bits (168), Expect = 3e-14
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 31/159 (19%)
Query: 6 VKVVDSDNRMVP--YGQQGELLIRGYCNMLRYWGNEEKT----KEILGEDNWLRTGDQFV 59
V+D D VP G+ G + G L Y+ + EKT +EI G + GD
Sbjct: 198 TVVLDEDGSEVPPGSGEVGWIARGGRVP-LGYYKDPEKTAKTFREIDGV-RYAVPGDFAR 255
Query: 60 LTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQC 119
+ DG +++GR I GGE ++P E+E+ L HPD+ +A
Sbjct: 256 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADA------------------ 297
Query: 120 SIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
V G+ DER G+ + A ++L + L ELR +
Sbjct: 298 -----LVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDH 331
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 68.8 bits (169), Expect = 3e-14
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 6 VKVVDSDNRMVPYGQQ--GELLIRGYCNMLRYWGNEEKTKEILGEDNWLR---TGDQFVL 60
V+D D V G G + RG+ L Y+ + EKT E + +R GD+ +
Sbjct: 360 TVVLDEDGNPVEPGSGEIGWIARRGHIP-LGYYKDPEKTAETFPTIDGVRYAIPGDRARV 418
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
DG +++GR I GGE ++P E+E+ L HPD+ +A V
Sbjct: 419 EADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVV---------------- 462
Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
G+ DER G+E+ A ++L E + ELR +
Sbjct: 463 -------GVPDERWGQEVVAVVQLREGARPDLAELRAH 493
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 68.5 bits (167), Expect = 4e-14
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
G L I+ NML YW N E+T E+L D W+ TGD +DGF + GR ++II GG
Sbjct: 375 GTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTGDLLERREDGFFYIKGRSSEMIICGGV 433
Query: 82 NIYPSEIEDFLTTHPDILEAYVSE 105
NI P E++ + EA E
Sbjct: 434 NIAPDEVDRIAEGVSGVREAACYE 457
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 68.3 bits (167), Expect = 4e-14
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
GE+++RG M Y N + +E + W +GD V DG+ + R KD+II GGE
Sbjct: 403 GEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGE 461
Query: 82 NIYPSEIEDFLTTHPDILEAYV 103
NI E+E+ + THP +LEA V
Sbjct: 462 NISSLEVENVVYTHPAVLEASV 483
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 67.9 bits (166), Expect = 6e-14
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 6 VKVVDSDNRMVPYGQQGELLI-----RGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
V+++D + ++P G +G++ I R +C Y N EKT + D ++ TGD+ ++
Sbjct: 354 VQIIDDNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIM 412
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+DG+ VGR D+I G I P E+E L HP ++E+ V
Sbjct: 413 DEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAV 455
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 67.8 bits (166), Expect = 6e-14
Identities = 48/158 (30%), Positives = 63/158 (39%), Gaps = 27/158 (17%)
Query: 10 DSDNRMVPYGQQGELLIR-GYCNMLR-YWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGS 67
D + GQ GEL ++ G+ +M R Y GNEE+ D W TGD +DG+
Sbjct: 279 DGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTGDLAYRDEDGYFW 337
Query: 68 VVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVY 127
VGR D+I G + P E+E L HP + EA V
Sbjct: 338 FVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVI----------------------- 374
Query: 128 GIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAIQ 165
G D GE + A + L +E ELR A Q
Sbjct: 375 GKPDPVAGEIVKAFVSLRPGFEPSE-ELRRELLTFARQ 411
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 67.9 bits (166), Expect = 6e-14
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+++V + V G+ GELLI G + YW N KT++ + W R+GD++V DG
Sbjct: 341 LRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGS 399
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+ GR D++ G + P EIE L HP +LEA V
Sbjct: 400 YTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAV 437
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 66.2 bits (161), Expect = 3e-13
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
GE++I+G M Y N + T E + WL TGD V+ DG + R KD+II GGE
Sbjct: 393 GEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGE 451
Query: 82 NIYPSEIEDFLTTHPDILEAYV 103
NI E+E+ L +P +LE V
Sbjct: 452 NISSVEVENVLYKYPKVLETAV 473
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 65.7 bits (161), Expect = 4e-13
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 5 IVKVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILG-----------EDNWL 52
V++VD D + P G GE+ + G YW E+T+ G E WL
Sbjct: 380 TVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWL 439
Query: 53 RTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIE 89
RTGD +++ +VGRIKDL+I G N YP +IE
Sbjct: 440 RTGDLGFISEGEL-FIVGRIKDLLIVDGRNHYPDDIE 475
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 64.4 bits (157), Expect = 1e-12
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 36/165 (21%)
Query: 6 VKVVDSDNRMVPYGQQGELLIR-------GYCNMLRYWGNEEKTKEILGEDNWLRTGDQF 58
+ ++D D + G++GE++IR G Y+ + E+T E+ D + TGD
Sbjct: 364 IDIIDPDGKSCEVGEEGEIVIRTSDGKPLGLFM--GYYRDPERTAEVW-HDGYYHTGDTA 420
Query: 59 VLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQ 118
+ +DG+ VGR DLI G I P E+E L HP +LE V+
Sbjct: 421 WMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVT-------------- 466
Query: 119 CSIPGYCVYGIRDERMGEEIGASIRLTENSSLTED---ELRGYFK 160
G+ D G+ + A+I LT+ +E+ EL+ + K
Sbjct: 467 ---------GVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVK 502
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 64.5 bits (158), Expect = 1e-12
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 4 NIVKVVD-------SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD 56
+K+VD + + +GE+ IRG Y+ N EKT E ED W TGD
Sbjct: 330 CEIKLVDVPEMGYFAKDDP----PRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGD 385
Query: 57 QFVLTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
DG ++ R K+L + GE + ++E+ + P + + V
Sbjct: 386 IGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICV 433
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 63.2 bits (154), Expect = 3e-12
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLR----YWGNEEKTKEILGEDNWLRTGDQFVLT 61
+ V+D D + + G+ G+L I + L YW + EKT E++ W TGD
Sbjct: 270 IAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELI-AGRWYVTGDLVERD 328
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+DG+ +GR D+II G I P ++E L HP + EA V
Sbjct: 329 EDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAV 370
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 62.7 bits (153), Expect = 3e-12
Identities = 41/108 (37%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 8 VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED--------NWLRTGDQFV 59
V+D D R VP G GEL I G Y E T E D RTGD
Sbjct: 306 VLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVR 365
Query: 60 LTKDG---FGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
DG F +GRI D + IR G I EIE L HP + EA V
Sbjct: 366 YLPDGNLEF---LGRIDDQVKIR-GYRIELGEIEAALLRHPGVREAVV 409
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 61.4 bits (150), Expect = 1e-11
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 8 VVDSDNRMVPYGQQGELLIR-GYCNMLR-YWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+VD +P + G L I+ G+ +M+R W N EK + +W +GD + +DG+
Sbjct: 389 IVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGY 447
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
GR+ D+I GE + P E+E L HP + EA V
Sbjct: 448 FWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGV 485
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 60.2 bits (146), Expect = 3e-11
Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 28/159 (17%)
Query: 6 VKVVDSDNRMVPYGQQ--GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
+K+ D + +P+ + G L +RG Y+ + EIL +D + TGD +
Sbjct: 367 MKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAY 423
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
G+ + R KD+I GGE I ++E+ HP + EA
Sbjct: 424 GYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEA---------------------- 461
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ + E ++L + T +E+ Y GK
Sbjct: 462 -AVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGK 499
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 59.8 bits (145), Expect = 4e-11
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 7 KVVDSDNRMVPYGQ-QGELLIRGYCNMLRYWGNE----------------EKTKEILGED 49
++V+ M + +GE+ +RG Y+ + E + D
Sbjct: 370 RIVNDGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTAD 429
Query: 50 NWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
WLRTGD +T+DGF ++ R +D+I GGE IY +++E+++ P+++E V
Sbjct: 430 GWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAV 483
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 59.0 bits (143), Expect = 7e-11
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
GE+ IRG M Y G + D+W TGD L G V GR K+LI G
Sbjct: 373 GEIEIRGASMMSGYLGQAP-----IDPDDWFPTGDLGYLVDGGL-VVCGRAKELITVAGR 426
Query: 82 NIYPSEIE 89
NI+P+EIE
Sbjct: 427 NIFPTEIE 434
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 58.6 bits (142), Expect = 1e-10
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 7 KVVDSDNRMVPYG--QQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
K+V D R +P+ G+L +RG + RY+ + D W TGD + DG
Sbjct: 368 KIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLV----DGWFPTGDVATIDADG 423
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA 101
F + R KD+I GGE I +IE+ HP + EA
Sbjct: 424 FMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEA 460
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 58.5 bits (141), Expect = 1e-10
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 3 LNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN--WLRTGDQFVL 60
L + + D D +P G+ G + RY + EKT + W GD +
Sbjct: 330 LGDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSV 389
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
+DG+ + R +II GG NIYP E E+ LT HP + +
Sbjct: 390 DEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDV------------------- 430
Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
V G+ D MGE++ A I+L E +++ R
Sbjct: 431 ----AVIGVPDPEMGEQVKAVIQLVEGIRGSDELAR 462
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 57.2 bits (139), Expect = 3e-10
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 27/153 (17%)
Query: 6 VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEI-LGEDNWLRTGDQFVLTKD 63
V++V + + +P G+ G LL+RG M Y NEEKT E+ + D W TGD + +D
Sbjct: 322 VRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDED 381
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
GF ++VGR+K GGE + + +E+ L+ L D
Sbjct: 382 GFLTIVGRLKRFAKIGGEMVSLTAVEELLSEI------------LPED-----SLH---- 420
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
+ DE+ GE+I + LT L +EL
Sbjct: 421 -AAVEVPDEKKGEKI---VLLTTTEDLDPEELN 449
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 57.0 bits (138), Expect = 4e-10
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 21/101 (20%)
Query: 8 VVDSDNRM-VPYGQQGELLIRGYCNMLR-YWGNEEKTKE----ILG-------------E 48
+VD + +P GQ GE+ + G N+ YWG E+T IL +
Sbjct: 404 IVDPETASELPDGQIGEIWLHGN-NIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDD 462
Query: 49 DNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIE 89
W+RTGD V DG + GR+KDL+I G N YP ++E
Sbjct: 463 ALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLE 502
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 56.0 bits (136), Expect = 7e-10
Identities = 37/105 (35%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN------WLRTGDQFV 59
V ++D + + VP G GEL + G L Y E T E D RTGD
Sbjct: 308 VYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLAR 367
Query: 60 LTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
DG +GRI + IRG I EIE L HP + EA V
Sbjct: 368 WRPDGNIEFLGRIDRQVKIRG-FRIELGEIEQALLQHPGVREAAV 411
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 55.7 bits (135), Expect = 9e-10
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 21 QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG- 79
GE+L+RG ML Y G T D+W TGD L ++G+ + GR K+LII
Sbjct: 304 DGEILVRG-SLMLGYLGEPPAT------DDWWATGDLGHLDEEGYLYINGRKKNLIITSF 356
Query: 80 GENIYPSEIEDFLTTHPDILEAYV 103
G N+ P +E L P I +A V
Sbjct: 357 GRNVSPEWVESELQQAPAIAQAVV 380
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 55.5 bits (134), Expect = 1e-09
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 16 VPYGQQGELLIRGYCNMLR----YWGNEEKT-KEILGE-----DNWLRTGDQFVLTKDGF 65
P G+ GE+L R Y NE+ T ++L + D W RTGD DG
Sbjct: 294 APVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGR 353
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+ R+ D EN+ E+ D L P + EA V
Sbjct: 354 WYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANV 391
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 55.1 bits (133), Expect = 2e-09
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 24/109 (22%)
Query: 48 EDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYR 107
E W RT D L DG +V+GR D I GG + P +E L THP + +
Sbjct: 232 EPGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADC------ 284
Query: 108 LKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
V+G+ D+R+G+ + A++ + T + LR
Sbjct: 285 -----------------AVFGLPDDRLGQRVVAAVVGDGGPAPTLEALR 316
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 54.8 bits (132), Expect = 2e-09
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 38 NEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPD 97
L D W+ D ++GF +VGR K++I+ GG NI+P EIE L HP
Sbjct: 349 IGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPA 408
Query: 98 ILEAYV 103
+ E V
Sbjct: 409 VDEIVV 414
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 54.2 bits (131), Expect = 3e-09
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 28/157 (17%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYC---NMLRYWGNEEKTKEI-LGED-NWLRTGDQFVL 60
V+V+D + G+ G ++I+ +L WG++E+ K++ L + + TGD
Sbjct: 412 VQVLDETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYK 471
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
+DG+ V+GR D+I G + E+E+ + HPD+ E C+
Sbjct: 472 DEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAE------------------CA 513
Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRG 157
V G+RDE G+ + L ++ + D+L
Sbjct: 514 -----VVGVRDELKGQVPLGLVVLKDDCKIDADQLEN 545
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 54.4 bits (131), Expect = 3e-09
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 17 PYGQQGELLIRGYCNMLR-YWGNEEKTKEILG------------------EDNWLRTGDQ 57
P G+ GE+ + G N+ R YWG E+T+ G + WLRTGD
Sbjct: 425 PDGEVGEIWLHGD-NIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDL 483
Query: 58 FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIE 89
V DG + GRI DLI+ G N YP +IE
Sbjct: 484 GVYL-DGELYITGRIADLIVIDGRNHYPQDIE 514
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 54.0 bits (131), Expect = 3e-09
Identities = 41/112 (36%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL-------RTGDQF 58
V V+D D R VP G GEL I G Y E T E D + RTGD
Sbjct: 276 VYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLA 335
Query: 59 VLTKDG---FGSVVGRIKDLI-IRGGENIY---PSEIEDFLTTHPDILEAYV 103
DG F +GR D + IRG Y EIE L HP + EA V
Sbjct: 336 RWLPDGNLEF---LGRADDQVKIRG----YRIELGEIEAALLAHPGVREAVV 380
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 53.9 bits (130), Expect = 5e-09
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 24/124 (19%)
Query: 35 YWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTT 94
Y+ N E T E + +GD DG+ GR D + GEN+ + IE L
Sbjct: 366 YYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLR 424
Query: 95 HPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDE 154
HP I VY + DER+G+++ A++ L + ++ D
Sbjct: 425 HPAINRV-----------------------AVYAVPDERVGDQVMAALVLRDGATFDPDA 461
Query: 155 LRGY 158
+
Sbjct: 462 FAAF 465
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 53.7 bits (130), Expect = 5e-09
Identities = 38/104 (36%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 8 VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED-------NWLRTGDQFVL 60
V+D D + VP G GEL I G Y G E T E D RTGD
Sbjct: 271 VLDEDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRW 330
Query: 61 TKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
DG +GR D + IR G I EIE L HP + +A V
Sbjct: 331 RPDGRLEYLGRADDQVKIR-GFRIELGEIEAALRAHPGVADAVV 373
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 53.5 bits (129), Expect = 5e-09
Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 25/157 (15%)
Query: 8 VVDSDNRMVPYGQQGELL-IRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFG 66
+ GEL+ G Y+ + E E + +GD DG+
Sbjct: 339 EDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYA 397
Query: 67 SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCV 126
GR+ D + GEN+ + IE L +PD E V
Sbjct: 398 YFAGRLGDWMRVDGENLGTAPIERILLRYPDATEV-----------------------AV 434
Query: 127 YGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKA 163
Y + D +G+++ A++ L + D + +
Sbjct: 435 YAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQP 471
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 53.0 bits (128), Expect = 1e-08
Identities = 38/104 (36%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 8 VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKE--ILGEDN--WLRTGDQFVLTKD 63
V+D D R P GEL I G L YWG+ E T E I RTGD D
Sbjct: 313 VLDEDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPD 372
Query: 64 GFGSVVGR----IKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
G +GR +K IR G + EIE L HP + A V
Sbjct: 373 GTIEFLGRADHQVK---IR-GYRVELGEIEAALARHPGVQRAVV 412
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 51.9 bits (125), Expect = 2e-08
Identities = 36/161 (22%), Positives = 56/161 (34%), Gaps = 37/161 (22%)
Query: 8 VVDSDNRM--VPYGQQGELLIRGYCNMLR----YWGNEEKTKEILGE-----DNWLRTGD 56
+ D++ VP G+ G LL Y +E K+IL + D + TGD
Sbjct: 267 IRDANGFCIKVPPGEVGLLLGEI--TDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGD 324
Query: 57 QFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLL 116
G+ V R+ D GEN+ +E+E+ L HP + EA
Sbjct: 325 LVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEAN-------------- 370
Query: 117 QQCSIPGYCVYGIRDERMGEEIG-ASIRLTENSSLTEDELR 156
VYG+ G A++ L ++
Sbjct: 371 ---------VYGVEVPGTEGRAGMAALTLAPGAAFDPQAFA 402
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 51.8 bits (125), Expect = 2e-08
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
GE+ +RG L YW + ++ ++ W T D+ ++G +++GR+ +L GGE
Sbjct: 305 GEIWLRGASLALGYWRQG-QLVPLVNDEGWFATRDRGEW-QNGELTILGRLDNLFFSGGE 362
Query: 82 NIYPSEIEDFLTTHPDILEAYV 103
I P EIE + HP + + +V
Sbjct: 363 GIQPEEIERVINQHPLVQQVFV 384
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 51.5 bits (124), Expect = 3e-08
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 24/105 (22%)
Query: 52 LRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLD 111
T D L G+ ++GR II GGEN+YP+E+E +
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILA----------------- 368
Query: 112 FTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
TGL+Q CV G+ D GE + A I + ++ S++ +EL+
Sbjct: 369 -TGLVQDV-----CVLGLPDPHWGEVVTA-IYVPKDPSISLEELK 406
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 50.9 bits (122), Expect = 5e-08
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 6 VKVVDSDNRMV-PYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN---WLRTGDQFVLT 61
V +VD + V + GE+ G YW N E + + E + WLRTGD
Sbjct: 381 VLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGD-LGFL 439
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIE 89
+DG V GR+KD++I G N+YP +IE
Sbjct: 440 RDGELFVTGRLKDMLIVRGHNLYPQDIE 467
Score = 41.3 bits (97), Expect = 1e-04
Identities = 44/127 (34%), Positives = 53/127 (41%), Gaps = 16/127 (12%)
Query: 8 VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNW-------LRTGDQFVL 60
++D+D +VP G GEL + G Y T E D + RTGD L
Sbjct: 2519 ILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRL 2578
Query: 61 TKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQC 119
DG VGRI + IRG I EIE L HP + EA V L LD Q
Sbjct: 2579 RADGLVEYVGRIDHQVKIRGFR-IELGEIESRLLEHPAVREAVV----LALDTPSGKQ-- 2631
Query: 120 SIPGYCV 126
+ GY V
Sbjct: 2632 -LAGYLV 2637
Score = 35.5 bits (82), Expect = 0.010
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 5 IVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKE-----ILGEDN--WLRTGDQ 57
+ +V+D++ ++P G GEL I G Y G T E LGED RTGD+
Sbjct: 1453 LCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDR 1512
Query: 58 FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
DG +GR+ + G + P EI+ L P + +A V
Sbjct: 1513 ARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAV 1558
Score = 35.1 bits (81), Expect = 0.015
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 4 NIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEIL--------GEDNWLRTG 55
N + ++D +VP G GEL + G Y G+ +T GE + RTG
Sbjct: 4049 NRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLY-RTG 4107
Query: 56 DQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
D DG VGRI + G I EIE L ++ EA V
Sbjct: 4108 DLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAV 4155
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 50.0 bits (120), Expect = 1e-07
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRG-YCNMLR-YWGNEEKTKEILG---EDNWLRTGDQFVL 60
VVD D R V G+ GEL++R + M R +W + E+ E W GD ++
Sbjct: 288 ADVVDEDGRPVR-GEVGELVVRAPWPGMTRGFWRDPERYLETYWSRFPGVW-VHGDWALV 345
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA 101
+DG+ ++GR D I G+ + P+EIE L +HP + EA
Sbjct: 346 DEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEA 386
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 49.6 bits (118), Expect = 1e-07
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLR-YWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
+ ++D R +P G GEL I G + Y + T E RTGD DG
Sbjct: 552 LYILDQGLRPLPLGVPGELYIAG-LGLALGYLNRPDLTAERFIALRLYRTGDLARPLADG 610
Query: 65 FGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHP 96
+GR + IR G I EIE L P
Sbjct: 611 ALEYLGRKDSQVKIR-GFRIELGEIEAALAEQP 642
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 49.6 bits (119), Expect = 1e-07
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDL 75
GE+L+RG Y+ EE T+E+L ED W TGD + +G ++GR+K L
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKAL 561
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 49.3 bits (117), Expect = 2e-07
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
++VV D G +G+L +RG YW + + + WL T D+ + DG+
Sbjct: 324 IRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDS---PVANEGWLDTRDRVCIDSDGW 380
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTG--LLQQCSIP 122
+ R D + GG N+ P E+E + + EA V R + TG LQ +
Sbjct: 381 VTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVR---ESTGASTLQAFLVA 436
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 48.2 bits (114), Expect = 4e-07
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 25/150 (16%)
Query: 6 VKVVDSDNRMVPY-GQQGELL-IRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
++V D + R VP G+ + ++G Y+GNEE T+ L D + RTGD V ++
Sbjct: 343 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 402
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
G+ + R+KDLI GGE I ++E+ L HP + EA
Sbjct: 403 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEA---------------------- 440
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTED 153
V I + E A + E+
Sbjct: 441 -AVVAIPHPKWQERPLAVVVPRGEKPTPEE 469
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 47.4 bits (113), Expect = 8e-07
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 6 VKVVD-------SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQF 58
VK+VD S+++ PY +GE+ +RG Y+ +E +T+E++ ED WL TGD
Sbjct: 439 VKLVDVPEMNYTSEDQ--PY-PRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIG 495
Query: 59 VLTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
+ G ++ R K++ + GE I P +IE+ + + +V
Sbjct: 496 LWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFV 541
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 46.8 bits (112), Expect = 1e-06
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRG-YCNMLR-YWGNEEKTKEI-LGEDNWLR-TGDQFVLT 61
+VD + V G +G L+I+ + MLR +G+ E+ + + TGD
Sbjct: 415 PAIVDEEGNEVEGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFPGYYFTGDGARRD 474
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+DG+ ++GR+ D+I G + +E+E L +HP + EA V
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAV 516
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 45.8 bits (109), Expect = 2e-06
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 37 GNEEKTKEILGE--DNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTT 94
+E +EI+ + D + T D ++ G +GR+ D+I G N+YP E+ED +
Sbjct: 276 SDENAPEEIVVKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLR 335
Query: 95 HPDILEAYVSEYRLKLDFTG 114
P + EA V YR K G
Sbjct: 336 LPGVQEAVV--YRGKDPVAG 353
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 45.8 bits (109), Expect = 3e-06
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 6 VKVVDSDNRMVPYGQQGELLIR-GYCN---MLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
V ++D + + +P +GE+ + G ML Y G+ EKT + RTGD+
Sbjct: 262 VVLLDDEGKEIPV-TEGEIALDLGDRPIGLMLGYMGDPEKTAAAFR-GGYYRTGDKAYRD 319
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+DG+ VGR D+ I P E+E L HP + EA V
Sbjct: 320 EDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAV 361
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 44.9 bits (107), Expect = 5e-06
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 10 DSDNRM--VPYGQQGELLIRGYCNMLRYWG--NEEKT-KEIL------GEDNWLRTGDQF 58
D+D R V G+ G L+ R + + G + E + K+IL G D W TGD
Sbjct: 390 DADGRCIKVKPGEVGLLIGR-ITDRGPFDGYTDPEASEKKILRDVFKKG-DAWFNTGD-- 445
Query: 59 VLTKDGFG--SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
++ DGFG V R+ D GEN+ +E+E+ L+ P + EA V
Sbjct: 446 LMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVV 492
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 43.5 bits (103), Expect = 1e-05
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 10 DSDNRMVPYGQQGELLIRGYCNMLRYWGNEE---KTKEILGEDNWLRTGDQFVLTKDGFG 66
D+ +P G+ GE+++ G Y+ E K G W R GD G
Sbjct: 287 WDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRL 346
Query: 67 SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDI 98
GR + G ++ +E HP +
Sbjct: 347 WFCGRKAHRVETAGGTLFTVPVEQVFNRHPGV 378
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 43.4 bits (103), Expect = 2e-05
Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 8 VVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL---------RTGDQ 57
V+D D +VP G GEL I G Y E T E D + RTGD
Sbjct: 271 VLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDL 330
Query: 58 FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDI 98
+DG +GR D + G+ I EIE L P +
Sbjct: 331 VRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGV 371
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 43.2 bits (102), Expect = 2e-05
Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 38/164 (23%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEI------------LGEDN-WL 52
V V+ D G++GEL+ RG + YW + EKT E L E W
Sbjct: 341 VLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW- 399
Query: 53 RTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDF 112
+GD ++GF VGR ++I G + P+E+E+
Sbjct: 400 -SGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYA------------------ 440
Query: 113 TGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
TGL+ + +G+ D +G+ I + L L
Sbjct: 441 TGLVAEAV-----AFGVPDPTLGQAIVLVVTPPGGEELDRAALL 479
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 43.0 bits (102), Expect = 2e-05
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 14 RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD 56
++VP G + E+ ++G YW + E T E E+ + R GD
Sbjct: 359 KLVPNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD 401
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 41.8 bits (99), Expect = 5e-05
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 39/161 (24%)
Query: 8 VVDSDNRMVPY-GQQGELLIRG-YCNMLR-YWGNEEKTKEILGEDNWLR------TGDQF 58
VVD + V G+ G L+I+ + MLR +G+ E+ + + TGD
Sbjct: 428 VVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTY----FSPFPGYYFTGDGA 483
Query: 59 VLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQ 118
KDG+ + GR+ D+I G + +EIE L +HP + EA
Sbjct: 484 RRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEA----------------- 526
Query: 119 CSIPGYCVYGIRDERMGEEIGASIRLTENSSLTED---ELR 156
V GI D+ G+ I A + L + ++ ELR
Sbjct: 527 ------AVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELR 561
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 41.5 bits (98), Expect = 7e-05
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL--------RTGDQ 57
V+D+ + VP G GEL I G Y G E T E + + RTGD
Sbjct: 279 AYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDL 338
Query: 58 FVLTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
DG +GRI D + +RG I EIE L + P + EA V
Sbjct: 339 VRRRADGQLEYLGRIDDQVKVRG-FRIELGEIEAALRSIPGVAEAVV 384
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 40.4 bits (95), Expect = 2e-04
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 14 RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD--QFV 59
++ P G + E+ ++G Y + E T E+ + R GD +FV
Sbjct: 416 KLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 40.5 bits (95), Expect = 2e-04
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 21/106 (19%)
Query: 6 VKVVD--------SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN----WLR 53
VK+V SD M +GE++I G L Y+ N+EKT E+ D W
Sbjct: 483 VKLVSWEEGGYLISDKPM----PRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFY 538
Query: 54 TGD--QFVLTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHP 96
TGD QF DG ++ R KD++ ++ GE + ++E L+ P
Sbjct: 539 TGDIGQF--HPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSP 582
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 39.5 bits (93), Expect = 3e-04
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 7 KVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL---RTGDQFVLTKD 63
++D + +P G+QGE++I G Y N EKT E + TGD L +D
Sbjct: 330 LIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-ED 388
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEY 106
G GRI I G I EIE L + A V Y
Sbjct: 389 GLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPY 431
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 39.8 bits (93), Expect = 3e-04
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 17 PYGQ--QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKD 74
P G+ +GE+ +RG C Y+ N E T+E++ +D W TGD + +G ++ R K+
Sbjct: 459 PLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKIIDRKKN 517
Query: 75 LI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
LI + GE + +E+ +P + + +V
Sbjct: 518 LIKLSQGEYVALEYLENVYGQNPIVEDIWV 547
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 39.6 bits (92), Expect = 4e-04
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 8 VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKE-------ILGEDNWLRTGDQFVL 60
++D++ VP G GEL + G Y G T E + GE + RTGD
Sbjct: 838 ILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMY-RTGDLARY 896
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
DG GRI + G I EIE L HP + EA V
Sbjct: 897 RADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAV 939
Score = 36.9 bits (85), Expect = 0.003
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 8 VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNW------LRTGDQFVLT 61
++D VP G GEL + G Y T E D + RTGD
Sbjct: 3376 ILDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYR 3435
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
DG +GR+ + G I EIE L HP + EA V
Sbjct: 3436 ADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVV 3477
Score = 36.5 bits (84), Expect = 0.005
Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 8 VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNW-------LRTGDQFVL 60
V+D +P G GEL + G Y T E D + RTGD
Sbjct: 4880 VLDGQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARY 4939
Query: 61 TKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
DG +GR+ + IRG I EIE L HP + EA V
Sbjct: 4940 RADGVIDYLGRVDHQVKIRGFR-IELGEIEARLREHPAVREAVV 4982
Score = 35.3 bits (81), Expect = 0.010
Identities = 33/104 (31%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 8 VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNW-------LRTGDQFVL 60
++D+D ++ G GEL + G Y T E D + RTGD
Sbjct: 2332 ILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARY 2391
Query: 61 TKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
DG +GRI + IRG I EIE L HP + EA V
Sbjct: 2392 RADGVVEYLGRIDHQVKIRGFR-IELGEIEARLQAHPAVREAVV 2434
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 38.8 bits (91), Expect = 6e-04
Identities = 41/144 (28%), Positives = 51/144 (35%), Gaps = 28/144 (19%)
Query: 22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
G L +RG ML Y E D W TGD + ++GF ++ GR K GE
Sbjct: 982 GRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGE 1041
Query: 82 NIYPSEIEDFLTT-HPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGA 140
I + +E+ PD L A V SIP D R GE I
Sbjct: 1042 MISLAAVEELAAELWPDALHAAV----------------SIP--------DARKGERI-- 1075
Query: 141 SIRLTENSSLTEDELRGYFKGKAI 164
I LT S T + K
Sbjct: 1076 -ILLTTASDATRAAFLAHAKAAGA 1098
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 38.0 bits (88), Expect = 0.001
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 24/103 (23%)
Query: 54 TGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFT 113
+GD KDG+ + GR+ D+I G I +E+E L +HP EA
Sbjct: 517 SGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEA------------ 564
Query: 114 GLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
V GI E G+ I A + L E +E ELR
Sbjct: 565 -----------AVVGIEHEVKGQGIYAFVTLVEGVPYSE-ELR 595
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 37.8 bits (88), Expect = 0.002
Identities = 41/143 (28%), Positives = 49/143 (34%), Gaps = 14/143 (9%)
Query: 8 VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL-------RTGDQFVL 60
V+D VP G GEL I G Y T E D + RTGD
Sbjct: 3422 VLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARY 3481
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
DG +GRI + G I EIE L HP + EA V L D G Q
Sbjct: 3482 RADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVV----LARDGAGGKQ--- 3534
Query: 121 IPGYCVYGIRDERMGEEIGASIR 143
+ Y V E + +
Sbjct: 3535 LVAYVVPADPQGDWRETLRDHLA 3557
Score = 35.9 bits (83), Expect = 0.007
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNW-------LRTGDQF 58
+ ++D VP G GEL I G Y T E D + RTGD
Sbjct: 839 LYILDHYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLA 898
Query: 59 VLTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
DG +GR+ + IRG I EIE L P + EA V
Sbjct: 899 RYRADGVIEYLGRMDHQVKIRG-FRIELGEIEARLLAQPGVREAVV 943
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 36.7 bits (85), Expect = 0.004
Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 16 VPYGQQGELLIRGYCNMLRYWGNEEKTKEI-LGEDNWLRTGDQFVLTKDGFGSVVGRIKD 74
V G+ G +L RG Y G + + LG + W TGD + + G + GR+
Sbjct: 375 VSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSR 434
Query: 75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
+ G E + +E L A D G L C +PG
Sbjct: 435 FVKIGAEMVSLEALESILMEGFGQNAA---------DHAGPLVVCGLPG 474
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 36.3 bits (84), Expect = 0.004
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL---RTGDQFVLTK 62
+ ++D + +P G++GE++I G Y N EKT E RTGD +T
Sbjct: 327 LFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT- 385
Query: 63 DGFGSVVGRIKDLIIRGGENIYPSEIED 90
DG GR+ D I+ + Y E+ED
Sbjct: 386 DGQLFYQGRL-DFQIK--LHGYRIELED 410
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 35.9 bits (84), Expect = 0.007
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 6 VKVVDSDNRMVPYGQQGELLI-RGYCNMLR-YWGNEE---KT--KEILGEDNWLRTGDQF 58
VVD + + G+ G L+I + M+R +G+ E KT G TGD
Sbjct: 435 PAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKG---MYFTGDGA 491
Query: 59 VLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+DG+ + GR+ D++ G + +EIE L HP + EA V
Sbjct: 492 RRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAV 536
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 35.8 bits (82), Expect = 0.007
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 21 QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLI-IRG 79
+GE+ IRG Y+ E+ TKE+L D WL TGD +G ++ R K++ +
Sbjct: 468 RGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQ 526
Query: 80 GENIYPSEIED 90
GE + IE+
Sbjct: 527 GEYVAVENIEN 537
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 35.2 bits (82), Expect = 0.009
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 14 RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD 56
++VP G + E+ ++G YW E T E E+ + R+GD
Sbjct: 404 KLVPVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD 446
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 35.0 bits (81), Expect = 0.011
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 8 VVDSDNRMVPYGQQGEL------LIRGYCNMLRYWGNEEKTKEILGEDNWL------RTG 55
++D+ R VP G G+L L +GY G + T D + RTG
Sbjct: 789 ILDARMRPVPPGVAGDLYLTGIQLAQGYL------GRPDLTASRFIADPFAPGERMYRTG 842
Query: 56 DQFVLTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYVSE 105
D DG +GR D + IRG + I EI+ + PD+ +A
Sbjct: 843 DVARWLDDGAVEYLGRSDDQLKIRG-QRIELGEIDRAMQALPDVEQAVTHA 892
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 34.3 bits (79), Expect = 0.021
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 35 YWGNEEKTKEILGE-DNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLT 93
++ N+EK K++ + + +GD ++G+ ++V R D I G + + IE +
Sbjct: 476 FYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSIL 535
Query: 94 THPDILE 100
HP +LE
Sbjct: 536 KHPLVLE 542
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 34.1 bits (78), Expect = 0.022
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 56 DQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
D + +DG+ ++GR D+I G + EIE+ +++HP + E V
Sbjct: 478 DWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAV 525
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 33.9 bits (78), Expect = 0.031
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 21 QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLI 76
+GELLI+ Y+ +E+TK ED + +TGD + K+G + + R K L+
Sbjct: 541 KGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLV 596
>gnl|CDD|131210 TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase.
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the
first step in aromatic catabolism of phenylacetic acid
(PA) into phenylacetyl-CoA (PA-CoA). Often located in a
conserved gene cluster with enzymes involved in
phenylacetic acid activation (paaG/H/I/J),
phenylacetate-CoA ligase has been found among the
proteobacteria as well as in gram positive prokaryotes.
In the B-subclass proteobacterium Azoarcus evansii,
phenylacetate-CoA ligase has been shown to be induced
under aerobic and anaerobic growth conditions. It
remains unclear however, whether this induction is due
to the same enzyme or to another isoenzyme restricted to
specific anaerobic growth conditions [Energy metabolism,
Other].
Length = 422
Score = 33.3 bits (76), Expect = 0.048
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 7 KVVDSDNRMV-PYGQQGEL----LIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
+++D V P G++GEL L + ++RY + T+ + G +R D+
Sbjct: 258 EIIDPHTGEVLPDGEEGELVFTTLTKEALPVIRYR-TRDLTRLLPGTARTMRRMDR---- 312
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
+ GR D++I G N++P+++E+ + ++ Y+L+L G + + ++
Sbjct: 313 ------ITGRSDDMLIIRGVNVFPTQLEEVILKMDEL----SPHYQLELTRNGHMDELTL 362
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive
yellow protein activation family. This model represents
the 4-coumarate--CoA ligase associated with biosynthesis
of the 4-hydroxy cinnamyl (also called 4-coumaroyl)
chromophore covalently linked to a Cys residue in
photoactive yellow protein of Rhodobacter spp. and
Ectothiorhodospira halophila. This enzyme is designated
6.2.1.12 and therefore joins a number of plant enzymes
linked to lignin biosynthesis and given similar names.
Length = 386
Score = 31.8 bits (72), Expect = 0.12
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 56 DQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEY--RLK 109
D+ KDG +++GR +++ GG N+ P + D L +P + A V RLK
Sbjct: 281 DRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRLDGRRLK 336
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 31.5 bits (72), Expect = 0.18
Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 38/162 (23%)
Query: 5 IVKVVDSDNR-MVPYGQQGELLI----RGYCNMLRYWGNEEKTKEILGE-DNWLRTGDQF 58
I ++VD + +P G++GEL+I + ++RY +T +I + G
Sbjct: 269 IFEIVDPETGEQLPDGERGELVITTLTKEGMPLIRY-----RTGDITVILSDPCGCGRTH 323
Query: 59 VLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQ 118
+ + GR D++I G N++PS+IE L P++ Y++ L
Sbjct: 324 RRIER----IEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTP----HYQIILT------- 368
Query: 119 CSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
R+ + E+ + L + EDE R K
Sbjct: 369 -----------RNGGLD-ELTVRVELENEAEELEDERRLAKK 398
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 29.9 bits (68), Expect = 0.55
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
DG+ ++GR D+I G + EIE+ +++HP + E V
Sbjct: 485 ADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAV 526
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 29.7 bits (67), Expect = 0.66
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 86 SEIEDFLTTHPDI 98
SEI DFLT HP +
Sbjct: 226 SEIGDFLTMHPGV 238
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 29.5 bits (67), Expect = 0.78
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGY--CNMLRYWGNEEKTKEI-----LGEDNWLRTGDQF 58
V+ D + + V G+ GEL+ L +W + + ++ W R GD
Sbjct: 422 VEAFDEEGKPVI-GEVGELVCTKPFPSMPLYFWNDPDGSRYRDAYFDTFPGVW-RHGDWI 479
Query: 59 VLTKDGFGSVV-GRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+T G G ++ GR + GG I +EI + P++ ++ V
Sbjct: 480 KITPHG-GVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLV 524
>gnl|CDD|147024 pfam04664, OGFr_N, Opioid growth factor receptor (OGFr) conserved
region. Opioid peptides act as growth factors in neural
and non-neural cells and tissues, in addition to serving
in neurotransmission/neuromodulation in the nervous
system. The Opioid growth factor receptor is an integral
membrane protein associated with the nucleus. The
conserved region is situated at the N-terminus of the
member proteins with a series of imperfect repeats lying
immediately to its C-terminus.
Length = 214
Score = 29.3 bits (66), Expect = 0.82
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 22/75 (29%)
Query: 76 IIRGGENIY-----PSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIR 130
I G N + P EIE F PD+ + + Y+L LDF YGI
Sbjct: 56 IREQGLNPHAPPLTPQEIEQFQND-PDVKKRLLKAYKLMLDF--------------YGII 100
Query: 131 DERMGEEIGASIRLT 145
+ G IR +
Sbjct: 101 --LNDRKTGEVIRAS 113
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 29.4 bits (66), Expect = 1.0
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 21 QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLI-IRG 79
+GE+ +RG Y ++ T+E+L D W TGD +G ++ R K++ +
Sbjct: 465 RGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQ 523
Query: 80 GENIYPSEIEDFLTTHPDILEAYV 103
GE + +E+ + P I +V
Sbjct: 524 GEYVAVENLENTYSRCPLIASIWV 547
>gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK
catalyzes the first step in the aromatic degradation
pathway, by converting phenylacetic acid (PA) into
phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has
been found in proteobacteria as well as gram positive
prokaryotes. The enzyme is specifically induced after
aerobic growth in a chemically defined medium containing
PA or phenylalanine (Phe) as the sole carbon source.
PaaKs are members of the adenylate-forming enzyme (AFE)
family. However, sequence comparison reveals divergent
features of PaaK with respect to the superfamily,
including a novel N-terminal sequence.
Length = 424
Score = 27.9 bits (62), Expect = 2.4
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 6 VKVVD-SDNRMVPYGQQGEL----LIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
+++D +P G+ GEL L + ++RY + T+ + G +R D+
Sbjct: 260 PEIIDPETGEPLPDGEIGELVFTTLTKEALPVIRY-RTRDLTRLLPGTARTMRRIDR--- 315
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAY 102
+ GR D +I G N++PS+IE+ L P++ Y
Sbjct: 316 -------ITGRSDDXLIIRGVNVFPSQIEEILVKFPELSPHY 350
>gnl|CDD|223225 COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component
I [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 462
Score = 27.3 bits (61), Expect = 4.3
Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 13/101 (12%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V V D + G + L + Q L ++ +
Sbjct: 142 VLVFDHQKGKLYLIAFGAERLEQLLARLEDALAPLPEGDPPLPREV-----QSNLDREAY 196
Query: 66 GSVVGRIKDLIIRGGENIY---PS-EIEDFLTTHPDILEAY 102
V + K+ I G +IY S E D L Y
Sbjct: 197 EEAVRKAKEYIRAG--DIYQVVLSRRFE--APCDGDPLALY 233
>gnl|CDD|173878 cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding
component of ABC-type thermophilic oligopeptide-binding
protein Hb8-like import systems, contains the type 2
periplasmic binding fold. This family includes the
substrate-binding domain of an ABC-type
oligopeptide-binding protein Hb8 from Thermus
thermophilius and its closest homologs from other
bacteria. The structural topology of this
substrate-binding domain is similar to those of DppA
from Escherichia coli and OppA from Salmonella
typhimurium, and thus belongs to the type 2 periplasmic
binding fold protein (PBP2) superfamily. The DppA binds
dipeptides and some tripeptides and is involved in
chemotaxis toward dipeptides, whereas the OppA binds
peptides of a wide range of lengths (2-35 amino acid
residues) and plays a role in recycling of cell wall
peptides, which precludes any involvement in chemotaxis.
The type 2 periplasmic binding proteins are soluble
ligand-binding components of ABC or tripartite
ATP-independent transporters and chemotaxis systems.
Members of the PBP2 superfamily function in uptake of a
variety of metabolites in bacteria such as amino acids,
carbohydrate, ions, and polyamines. Ligands are then
transported across the cytoplasmic membrane energized by
ATP hydrolysis or electrochemical ion gradient. Besides
transport proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 482
Score = 27.2 bits (61), Expect = 4.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 34 RYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
Y + EK K++L E W D + KDG
Sbjct: 304 AYEYDPEKAKQLLDEAGWKLGPDGGIREKDG 334
>gnl|CDD|173879 cd08514, PBP2_AppA_like, The substrate-binding component of the
oligopeptide-binding protein, AppA, from Bacillus
subtilis contains the type 2 periplasmic-binding fold.
This family represents the substrate-binding domain of
the oligopeptide-binding protein, AppA, from Bacillus
subtilis and its closest homologs from other bacteria
and archaea. Bacillus subtilis has three ABC-type
peptide transport systems, a dipeptide-binding protein
(DppA) and two oligopeptide-binding proteins (OppA and
AppA) with overlapping specificity. The dipeptide (DppA)
and oligopeptide (OppA) binding proteins differ in
several ways. The DppA binds dipeptides and some
tripeptides and also is involved in chemotaxis toward
dipeptides, whereas the OppA binds peptides of a wide
range of lengths (2-35 amino acid residues) and plays a
role in recycling of cell wall peptides, which precludes
any involvement in chemotaxis. Most of other periplasmic
binding proteins are comprised of only two globular
subdomains corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 483
Score = 26.8 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 38 NEEKTKEILGEDNWLRTGDQFVLTKDG 64
+ +K KE+L E W+ D +L KDG
Sbjct: 310 DPDKAKELLAEAGWVDGDDDGILDKDG 336
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 27.0 bits (60), Expect = 5.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 48 EDNWLRTGDQFVLTKDGFGSVVGRIK 73
E W TGD + GF + GR K
Sbjct: 589 ERGWYDTGDIVRFDEQGFVQIQGRAK 614
>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two
tandem repeats of the cystathionine beta-synthase (CBS
pair) domains associated with either the CAP_ED (cAMP
receptor protein effector domain) family of
transcription factors and the DUF294 domain or the PB1
(Phox and Bem1p) domain. Members of CAP_ED, include
CAP which binds cAMP, FNR (fumarate and nitrate
reductase) which uses an iron-sulfur cluster to sense
oxygen, and CooA a heme containing CO sensor. In all
cases binding of the effector leads to conformational
changes and the ability to activate transcription.
DUF294 is a putative nucleotidyltransferase with a
conserved DxD motif. The PB1 domain adopts a beta-grasp
fold, similar to that found in ubiquitin and
Ras-binding domains. A motif, variously termed OPR, PC
and AID, represents the most conserved region of the
majority of PB1 domains, and is necessary for PB1
domain function. This function is the formation of PB1
domain heterodimers, although not all PB1 domain pairs
associate. CBS is a small domain originally identified
in cystathionine beta-synthase and subsequently found
in a wide range of different proteins. CBS domains
usually come in tandem repeats, which associate to form
a so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown.
Length = 113
Score = 26.0 bits (58), Expect = 5.8
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 59 VLTKDGFGSVVGRI--KDLIIRG---GENIYPSEIEDFLTTHPD 97
VL DG +VG KD+ +R G + + +E +T +P
Sbjct: 27 VLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPV 69
>gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase. [Amino acid
biosynthesis, Aspartate family].
Length = 266
Score = 26.6 bits (59), Expect = 6.7
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 124 YCVYGIRDERMGEEIG-ASIRL 144
G+ ER EEIG ++R
Sbjct: 189 TEREGLTGERGREEIGIHAVRG 210
>gnl|CDD|215569 PLN03089, PLN03089, hypothetical protein; Provisional.
Length = 373
Score = 26.5 bits (59), Expect = 8.7
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 1 MSLNIVKVVDSDNRMVPYGQQG-ELL 25
SL VK +DS + VP G++ EL+
Sbjct: 235 ESLKAVKYIDSAHFSVPEGKRAVELV 260
>gnl|CDD|191115 pfam04862, DUF642, Protein of unknown function, DUF642. This
family represents a conserved region found in a number
of uncharacterized plant proteins.
Length = 323
Score = 26.2 bits (58), Expect = 9.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 1 MSLNIVKVVDSDNRMVPYGQQGELLIRG 28
SL VK +DS + VP G + L+ G
Sbjct: 192 ESLKAVKYIDSAHFSVPEGARAIELVAG 219
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.141 0.419
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,702,906
Number of extensions: 824000
Number of successful extensions: 1114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 179
Length of query: 165
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 75
Effective length of database: 6,945,742
Effective search space: 520930650
Effective search space used: 520930650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)