RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7295
(165 letters)
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 182 bits (464), Expect = 9e-56
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 24/159 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+V D +R V G+ G LL RG + Y+ EE ED + RTGD LT+DG+
Sbjct: 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGY 422
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
V GR KD I RGGE + E+E+ L HP + +A
Sbjct: 423 IVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDA-----------------------A 459
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
+ + D+ +GE I + + EL+ + + + +
Sbjct: 460 MVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGL 497
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 178 bits (454), Expect = 7e-54
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V V D++ +P G+ G L+ RG Y+ + + + + +GD + +G+
Sbjct: 367 VWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGY 426
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+V GR KD I RGGE I EIE+ L HP ++ A
Sbjct: 427 ITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYA-----------------------A 463
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
+ + DE MGE+ A + + E L ++R + + + I
Sbjct: 464 LVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLREQGI 500
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 175 bits (445), Expect = 5e-53
Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 23/157 (14%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+K+VD R VP G+ G L RG Y+ + E ++ EDN+ +GD T DG
Sbjct: 372 IKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGN 431
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
VVGRIKD I RGGE I EIE + HP+++ A
Sbjct: 432 LRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHA-----------------------A 468
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
+ I DE+ GE+ A I R +
Sbjct: 469 LVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELG 505
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 170 bits (432), Expect = 3e-51
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 6 VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
+V D + + +P G G + ++G YW EKTK +D + TGD + + G
Sbjct: 331 ARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERG 390
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+ ++GR KDL+I GG N+YP EIE + P ++E+
Sbjct: 391 YVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVES----------------------- 427
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ GE + A + + +++ E ++ G+
Sbjct: 428 AVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ 465
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 166 bits (422), Expect = 8e-50
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 28/157 (17%)
Query: 6 VKVVDSD---NRMVPYGQQGELLIRGY-CNMLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
V++V + +V G++GEL++ + Y + T E L +D W RT D V T
Sbjct: 332 VRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWT 390
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
+G ++GR+ D+II GGENI+PSEIE L T P + E
Sbjct: 391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEV-------------------- 430
Query: 122 PGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
V G+ D+R G+ + A + +L+ D L +
Sbjct: 431 ---VVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 156 bits (396), Expect = 4e-46
Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 26/159 (16%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V VVD+++R +P G+ GE+++RG YW N T+ + W TGD DG+
Sbjct: 332 VAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGY 390
Query: 66 GSVVGRI--KDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
GR K+LI GGEN+YP+E+E L HP I +A
Sbjct: 391 LFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADA---------------------- 428
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ D + E I A S+ D L +
Sbjct: 429 -VVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASL 466
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 153 bits (389), Expect = 5e-45
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
V V D + +G+ GE++I+ + YW E T++ ++ W RTGD + +G+
Sbjct: 348 VAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGY 405
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+ R+KD+II GGEN+YP+EIE + P + E
Sbjct: 406 LYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEV-----------------------A 442
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ DE+ GE A + + + ++E ++ Y +
Sbjct: 443 VIGLPDEKWGEIAAAIVVADQ-NEVSEQQIVEYCGTR 478
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 153 bits (388), Expect = 1e-44
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 6 VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
KV+D D + + ++GE+ ++G M Y N E TKE++ E+ WL TGD ++
Sbjct: 373 AKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+V R+K LI G + P+E+E L HP I +A
Sbjct: 433 HFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDA----------------------- 469
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ D GE GA + L ++TE E+ Y +
Sbjct: 470 GVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 151 bits (384), Expect = 2e-44
Identities = 43/162 (26%), Positives = 61/162 (37%), Gaps = 28/162 (17%)
Query: 6 VKVVDSDNRMVP---YGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
+++V+ D + GE+ +RG Y + T ED + RTGD V
Sbjct: 335 LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394
Query: 63 DGFGSVVGR-IKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
DG+ +VGR DLI GG I EIE+ L HP++ EA
Sbjct: 395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREA-------------------- 434
Query: 122 PGYCVYGIRDERMGEEIGASI-RLTENSSLTEDELRGYFKGK 162
V G D +GE I A I + L + +
Sbjct: 435 ---AVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAAR 473
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 151 bits (385), Expect = 3e-44
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 6 VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
KVVD D + + Q+GEL +RG M Y N E T ++ +D WL +GD +D
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+V R+K LI G + P+E+E L HP+I +A
Sbjct: 431 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA----------------------- 467
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ D+ GE A + L ++TE E+ Y +
Sbjct: 468 GVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ 505
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 151 bits (383), Expect = 4e-44
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 24/158 (15%)
Query: 6 VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
+K+VD + +P Q GE+ IRG M Y + E T + ++ WL TGD + D
Sbjct: 366 MKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDD 425
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+V R+K+LI G + P+E+E L HP+I +A
Sbjct: 426 ELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDA----------------------- 462
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G++DE GE A + +E S TEDE++ Y +
Sbjct: 463 AVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQ 500
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 146 bits (370), Expect = 3e-42
Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 32/157 (20%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
VK+ + + GEL+I+G M Y + T E+ + TGD + +G+
Sbjct: 338 VKIKNPNK-----EGHGELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEIDHEGY 390
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
+ R KDLII GGENIYP +IE P I +A
Sbjct: 391 VMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDA-----------------------V 427
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
G D+ G+ +++ +L Y
Sbjct: 428 CVGHPDDTWGQVPKLYFVSES--DISKAQLIAYLSKH 462
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 143 bits (362), Expect = 5e-41
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 30/164 (18%)
Query: 6 VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN----WLRTGDQFVL 60
+KV+ ++ R + G+ GE++IRG YW E++ +E D + RTGD +
Sbjct: 367 LKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFI 426
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
++GF R+K++I G I P E+E L H +++
Sbjct: 427 DEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDV------------------- 467
Query: 121 IPGYCVYGIRDERMGEEIGASIRLTEN--SSLTEDELRGYFKGK 162
V G DE GE A I L + E+++ + + +
Sbjct: 468 ----AVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRER 507
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 136 bits (346), Expect = 9e-39
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+++ D VP G+ G+L I+G + YW N EK++ W+R+GD++ +G
Sbjct: 363 IELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGC 421
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
GR D++ G+ + P E+E L H +LEA
Sbjct: 422 YVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEA-----------------------A 458
Query: 126 VYGIRDERMGEEIGASIRLTEN---SSLTEDELRGYFKGK 162
V G+ + A + L S + +EL+ + K +
Sbjct: 459 VVGVDHGG-LVKTRAFVVLKREFAPSEILAEELKAFVKDR 497
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 138 bits (350), Expect = 9e-39
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 24/158 (15%)
Query: 6 VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
+K+VD D + Q GE+ IRG+ M Y N T E + +D WL TGD ++ D
Sbjct: 413 MKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDD 472
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+V R+K+LI G + P+E+E L HPDI +
Sbjct: 473 ELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDV----------------------- 509
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V +++E GE A + +++S L+ED+++ + +
Sbjct: 510 AVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQ 547
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 117 bits (297), Expect = 8e-32
Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 25/159 (15%)
Query: 6 VKVVDSDNRMVPY-GQ-QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
++V D + R VP G+ GE+ ++G Y+GNEE T+ L D + RTGD V ++
Sbjct: 366 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
G+ + R+KDLI GGE I ++E+ L HP + EA
Sbjct: 426 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEA---------------------- 463
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V I + E A + E+ K
Sbjct: 464 -AVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG 501
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 101 bits (253), Expect = 8e-26
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQ-FVLTKDG 64
+++ + V G + I G M Y+G++ EI WL TGD ++L DG
Sbjct: 396 IEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIAA-TGWLDTGDLGYLL--DG 452
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+ V GRIKDLII G NI+P +IE P+I
Sbjct: 453 YLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDA 491
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 91.2 bits (227), Expect = 3e-22
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 6 VKVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILG--------EDNWLRTGD 56
VK++D D + + Q GE+ ++ YW E+T+ +LRTGD
Sbjct: 383 VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGD 442
Query: 57 Q-FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIE 89
F+ + V GRIKDLII G+N YP +IE
Sbjct: 443 LGFL--HENELYVTGRIKDLIIIYGKNHYPQDIE 474
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 90.4 bits (225), Expect = 6e-22
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRG-----YCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
V+++D ++P G +G++ IR Y N +KT + ++ GD+ +
Sbjct: 385 VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIK 443
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+DG+ +GR D+I G I PSE+E+ L HP ++E V
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAV 486
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 78.8 bits (195), Expect = 6e-18
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 6 VKVVDSDNRMVPYGQQGELLIR---GYCNMLR--YWGNEEKTKEILGEDNWLRTGDQFVL 60
++++D D R+ G++GE++I G L Y + E+T+E D + TGD +
Sbjct: 404 IELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM 462
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+DG+ VGR D+I G + P E+E L HP +LE +
Sbjct: 463 DEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAI 505
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 57.8 bits (140), Expect = 1e-10
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 5 IVKVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILG-----------EDNWL 52
IV++VDSD + P G GE+ + G YW ++++ G E WL
Sbjct: 403 IVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWL 462
Query: 53 RTGDQ-FVLTKDGFGSVVGR 71
RTGD FV DG ++GR
Sbjct: 463 RTGDSGFVT--DGKMFIIGR 480
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 52.7 bits (127), Expect = 7e-09
Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 37/155 (23%)
Query: 5 IVKVVDSDN-RMVPYGQQGEL----LIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD-QF 58
+++D + ++P G+ GEL L + ++RY RT D
Sbjct: 271 YPEIIDPETGEVLPDGELGELVFTSLTKEALPIIRY-----------------RTRDLTR 313
Query: 59 VLTKDG-----FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFT 113
+L + GR D++I G N++P++IE+ L + Y++ L
Sbjct: 314 LLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRAL----APHYQIVLTKE 369
Query: 114 GLLQQCSI-----PGYCVYGIRDERMGEEIGASIR 143
G L ++ P + + + I+
Sbjct: 370 GPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIK 404
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 52.3 bits (126), Expect = 1e-08
Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 40/158 (25%)
Query: 5 IVKVVDSDN-RMVPYGQQGEL----LIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFV 59
+V+++D + VP G+ GEL L R ++RY RT D
Sbjct: 266 LVEIIDPETGEPVPEGEIGELVLTTLDREMMPLIRY-----------------RTRDLTR 308
Query: 60 LTKDG---------FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKL 110
+ + GR D+ I G NI+P ++E L P++ S Y + L
Sbjct: 309 ILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPEL----GSNYLITL 364
Query: 111 DFTGLLQQCSI-----PGYCVYGIRDERMGEEIGASIR 143
+ + + I E++ +I ++
Sbjct: 365 ETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQLK 402
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 50.8 bits (122), Expect = 3e-08
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 32/128 (25%)
Query: 5 IVKVVDSDN-RMVPYGQQGEL----LIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD-QF 58
+++D ++P G QGEL L + ++RY RT D
Sbjct: 273 YPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRY-----------------RTRDLTA 315
Query: 59 VLTKDG-----FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFT 113
+L + GR D++I G N++PS+IE+ + P + ++++ L
Sbjct: 316 LLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLL----SGQFQITLSRD 371
Query: 114 GLLQQCSI 121
G + + +
Sbjct: 372 GHMDRLDL 379
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 46.0 bits (110), Expect = 1e-06
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 35/115 (30%)
Query: 8 VVDSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKE--ILGEDNWL-RTGDQF 58
++D D + + G+QGE+++ +G Y N EKT E + TGD
Sbjct: 335 IIDEDGKELSSGEQGEIIVTGPAVSKG------YLNNPEKTAEAFFTFKGQPAYHTGDIG 388
Query: 59 VLTKDG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILEAYV 103
LT+D + GR+ K G Y ++ L P + A
Sbjct: 389 SLTEDNILLY---GGRLDFQIK---YAG----YRIELEDVSQQLNQSPMVASAVA 433
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics,
PSI-2, protein structure initiative; 1.43A {Bacteroides
vulgatus atcc 8482} PDB: 3lax_A
Length = 109
Score = 40.8 bits (96), Expect = 2e-05
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 71 RIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI-----PGYC 125
D+II G NI+P +IE L ++ S+Y + L+ + ++ +
Sbjct: 2 NADDMIILKGVNIFPIQIETILLQFKEL----GSDYLITLETAESNDEMTVEVELSQLFT 57
Query: 126 VYGIRDERMGEEIGASIR 143
R + + EI ++
Sbjct: 58 DDYGRLQALTREITRQLK 75
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 41.3 bits (98), Expect = 6e-05
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 36/115 (31%)
Query: 8 VVDSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKE--ILGEDNWL-RTGDQF 58
++ D + P G++GE++I G Y G+ E T++ + + +TGD
Sbjct: 332 IMKEDGTIAPDGEKGEIVIVGPSVSVG------YLGSPELTEKAFTMIDGERAYKTGDAG 385
Query: 59 VLTKDG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILEAYV 103
+ +G + GR+ K + G Y EIE L + A +
Sbjct: 386 YVE-NGLLFY---NGRLDFQIK---LHG----YRMELEEIEHHLRACSYVEGAVI 429
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 41.3 bits (98), Expect = 6e-05
Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 44/121 (36%)
Query: 8 VVDSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKE--I---LGEDNWL-RTG 55
+VD + ++ G+ GEL I RG YW E T + + L +TG
Sbjct: 359 IVDENLQLKSVGEAGELCIGGEGLARG------YWKRPELTSQKFVDNPFVPGEKLYKTG 412
Query: 56 DQFVLTK---DG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILEAY 102
D + DG + +GRI K IRG + E+E L H I E
Sbjct: 413 D---QARWLSDGNIEY---LGRIDNQVK---IRG----HRVELEEVESILLKHMYISETA 459
Query: 103 V 103
V
Sbjct: 460 V 460
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 40.6 bits (96), Expect = 1e-04
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 8 VVDSDNRMVPYGQQGELLIR----GYCNMLR-YWGNEEKTKEI--LGEDNWLRTGDQFVL 60
+VD++ +G L+I G R +G+ E+ ++ N +GD
Sbjct: 448 LVDNEGHPQEGATEGNLVITDSWPG---QARTLFGDHERFEQTYFSTFKNMYFSGDGARR 504
Query: 61 TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
+DG+ + GR+ D++ G + +EIE L HP I EA V
Sbjct: 505 DEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 2e-04
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 45/167 (26%)
Query: 2 SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
+ + ++ LL + + + T L + T D+
Sbjct: 255 NAKAWNAFNLSCKI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---V 303
Query: 62 KDGFGSVVG-RIKDLIIRGGENIYPSEIEDFLTTHP---DILEAYVSEYRLKLDFTGLLQ 117
K + R +DL P E+ LTT+P I+ + + D +
Sbjct: 304 KSLLLKYLDCRPQDL---------PREV---LTTNPRRLSIIAESIRDGLATWDN---WK 348
Query: 118 QCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
+ +++ I +S+ + L E R F ++
Sbjct: 349 H----------VNCDKLTTIIESSL-----NVLEPAEYRKMFDRLSV 380
Score = 34.8 bits (79), Expect = 0.010
Identities = 16/150 (10%), Positives = 43/150 (28%), Gaps = 38/150 (25%)
Query: 34 RYWGN--EEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDF 91
W + + ++ + + ++ K S + I + + ++E+
Sbjct: 394 LIWFDVIKSDVMVVVNKLH-----KYSLVEKQPKESTI-SIPSIYLE-----LKVKLENE 442
Query: 92 LTTHPDILEAYVSEYRLKLDFTGLLQQCS---IPGYCVYGIRDERMGEE----------- 137
H I++ Y D L+ + + +++ E
Sbjct: 443 YALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 138 --IGASIRLT-----ENSSLTED--ELRGY 158
+ IR + S+ +L+ Y
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Score = 28.7 bits (63), Expect = 1.0
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 39 EEKTKEILGE---DNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTT- 94
++ K IL + D+ + + D T R+ ++ E + +E+ L
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTL--------RLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 95 HPDILEAYVSEYR 107
+ ++ +E R
Sbjct: 91 YKFLMSPIKTEQR 103
Score = 26.0 bits (56), Expect = 7.8
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 39/126 (30%)
Query: 4 NIVKVVDSDNRMVPY------------------GQQGELLIRGYCNM------LRY---- 35
NI K DSD+ + PY ++ L + + +R+
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 36 WGNEEKTKEILGEDNWLRTGDQFVLTKDG-FGSVVGRIKDLIIRGGENIYPSEIEDFLTT 94
W L + L+ ++ D + +V I D + + EN+ S+
Sbjct: 514 WNASGSILNTLQQ---LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK------- 563
Query: 95 HPDILE 100
+ D+L
Sbjct: 564 YTDLLR 569
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 39.9 bits (94), Expect = 2e-04
Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 33/111 (29%)
Query: 10 DSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKEILGEDNWL-RTGDQFVLTK 62
N V G GEL+I GY + + RTGD +
Sbjct: 363 PGSNEHVKKGMAGELVIEGSLVANGY------LNRPDAKGFCDINGRKMYRTGDIVRMDA 416
Query: 63 DG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILEAYV 103
D F +GR K +RG E+ + + + V
Sbjct: 417 DSSILF---LGRKDEQVK---VRG----QRLELGEVSEVIRSLSPTDIDVV 457
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 39.4 bits (93), Expect = 2e-04
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 36/115 (31%)
Query: 8 VVDSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKE--ILGEDNWL-RTGDQF 58
++D + + +P G++GE++I RG Y G E T++ E W RTGD
Sbjct: 331 IMDEEGQPLPEGEKGEIVIAGPSVSRG------YLGEPELTEKAFFSHEGQWAYRTGDAG 384
Query: 59 VLTKDG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILEAYV 103
+ DG GR+ K + G Y EIE + + A V
Sbjct: 385 FIQ-DGQIFC---QGRLDFQIK---LHG----YRMELEEIEFHVRQSQYVRSAVV 428
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 37.2 bits (87), Expect = 0.001
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 48/123 (39%)
Query: 8 VVDSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKE-------ILGEDNWL-R 53
+++ +++ P+G GEL I +G Y + TKE GE L R
Sbjct: 790 ILNEQSQLQPFGAVGELCISGMGVSKG------YVNRADLTKEKFIENPFKPGET--LYR 841
Query: 54 TGDQFVL---TKDG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILE 100
TGD L DG + GRI K IRG + EIE L +P + +
Sbjct: 842 TGD---LARWLPDGTIEY---AGRIDDQVK---IRG----HRIELEEIEKQLQEYPGVKD 888
Query: 101 AYV 103
A V
Sbjct: 889 AVV 891
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.002
Identities = 28/220 (12%), Positives = 49/220 (22%), Gaps = 90/220 (40%)
Query: 23 ELLIR--GYCNMLRYWGNEEKTKEILG------EDNWLRTGD--QFVLTKDGFGSVVGRI 72
EL+ + GY + L + ++L E+ +L D
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 73 KDLIIR------------------------------------GG---------E-----N 82
+I+ GG E
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 83 IYPSEIEDFLTTHPDILEAYVSE-------YRLKLDFTGLLQQ--------------CSI 121
Y + D + + L + + L+ L+ S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 122 PGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG 161
P V ++ + + T ELR Y KG
Sbjct: 239 PLIGVI---------QLAHYVVTAKLLGFTPGELRSYLKG 269
Score = 36.6 bits (84), Expect = 0.003
Identities = 29/117 (24%), Positives = 39/117 (33%), Gaps = 43/117 (36%)
Query: 47 GEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEY 106
G D LR GS+ RI D IIR + F TH I
Sbjct: 465 GSD--LRVLS---------GSISERIVDCIIR--LPVKWETTTQFKATH--I-------- 501
Query: 107 RLKLDFTGLLQQCSIPGYCVYGIRD--ERMGEEIGASIRLTENSSL---TEDELRGY 158
LDF G PG G+ R + G +R+ +L +D+ G+
Sbjct: 502 ---LDF-G-------PG-GASGLGVLTHRNKD--GTGVRVIVAGTLDINPDDDY-GF 543
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 35.2 bits (82), Expect = 0.007
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 54 TGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
TGD KDG+ ++GR+ D++ G + +EIE + P + E V
Sbjct: 507 TGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAV 556
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 32.9 bits (76), Expect = 0.042
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 34/117 (29%)
Query: 8 VVDSDNRMVPY-GQQGELLI------RGYCNMLRYWGNEEKTKEILGEDNWL-------R 53
++D + + + GE++ +GY + +T+ E + R
Sbjct: 346 LLDEHGQEIAEPDRAGEIVAFGAGLAQGY------RNDAARTRASFVELPYRGRLLRAYR 399
Query: 54 TGDQFVLTKDG---FGSVVGRIKDLI-IRGGENIY---PSEIEDFLTTHPDILEAYV 103
TGD+ + G F +GR + + G Y +E P IL+ +
Sbjct: 400 TGDRARYDEQGRLRF---IGRGDGQVKLNG----YRLDLPALEQRFRRQPGILDCAL 449
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA;
structural genomics; 2.60A {Methylobacillus flagellatus}
Length = 348
Score = 32.2 bits (73), Expect = 0.064
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 49 DNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYR 107
D + D ++L G G ++ K + DF+ +P+I +A V+ Y
Sbjct: 168 DGFFSLFDSYILEDRGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYL 226
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 32.0 bits (72), Expect = 0.075
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 11/79 (13%)
Query: 5 IVKVVDSDNRM-VPYGQQGELLI---RGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
VVDS V YG++G +++ + R + + + G + +
Sbjct: 296 TYDVVDSITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIR-LPGVSGFAGDRLADIE 354
Query: 61 TKDGFGSVVGRIKDLIIRG 79
+I G
Sbjct: 355 PLKISEGR------KVIEG 367
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer,
inter-domain beta sheet, structural genomics, PSI-2,
protein structure initiative; NMR {Bacillus subtilis}
SCOP: d.372.1.1
Length = 72
Score = 26.6 bits (58), Expect = 1.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 49 DNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTH 95
+NW + + D +G V + D +I GGE I +E +L
Sbjct: 9 NNWHDKLTETDVQIDFYGDEVTPVDDYVIDGGEIILRENLERYLREQ 55
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 27.1 bits (61), Expect = 2.7
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 16/45 (35%)
Query: 84 YPSEIEDFLTTHPDILEAYVSEYRLKLDFTG-------LLQQCSI 121
S I D L HP I + FTG + ++ +
Sbjct: 218 RGSVIGDHLVEHPGI--------D-MITFTGGTTTGERISEKAKM 253
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain,
copper-contain periplasmic, oxidoreductase; 1.70A
{Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Length = 638
Score = 27.2 bits (60), Expect = 3.0
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 13/51 (25%)
Query: 19 GQQGELLIRGYCNM--LRY-----------WGNEEKTKEILGEDNWLRTGD 56
G QGE+ + G +M L WG +++ I+G+ GD
Sbjct: 77 GHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGD 127
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 27.0 bits (59), Expect = 3.1
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 36 WGNEEKTKEILGED-NWLRTGDQFVLT--------KDGFGSVVGRI 72
W + G+ +L GD+ ++T + GFG G++
Sbjct: 369 WKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKV 414
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 26.7 bits (60), Expect = 3.5
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 16/44 (36%)
Query: 85 PSEIEDFLTTHPDILEAYVSEYRLKLDFTG-------LLQQCSI 121
SEI D++ H + ++FTG + + +
Sbjct: 210 GSEIGDYIVEHQAV--------N-FINFTGSTGIGERIGKMAGM 244
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger,
RNAse H, spliceosome, U5-220K, mutation, mRNA splicing,
nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB:
3lru_A
Length = 222
Score = 26.6 bits (58), Expect = 4.1
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 38 NEEKTKEILGEDNWLRTGDQFV---LTKDGFGSVVGRIKDLII 77
N ++ K IL D T + LT + + V ++KDLI+
Sbjct: 178 NNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLIL 220
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein,
periplasmic-binding P transport protein; HET: MPO; 1.70A
{Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Length = 324
Score = 26.7 bits (59), Expect = 4.3
Identities = 1/19 (5%), Positives = 5/19 (26%)
Query: 89 EDFLTTHPDILEAYVSEYR 107
+ T ++ +
Sbjct: 218 RRYATAWGPFVQQVMGTLN 236
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 26.2 bits (57), Expect = 5.3
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTH 95
G ++ + + E + ++E FL +
Sbjct: 195 GELLSNFISVTEQLAEEFFTGDVESFLNEY 224
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 26.4 bits (59), Expect = 5.3
Identities = 4/45 (8%), Positives = 12/45 (26%), Gaps = 16/45 (35%)
Query: 84 YPSEIEDFLTTHPDILEAYVSEYRLKLDFTG-------LLQQCSI 121
+ D + + + + FTG + ++
Sbjct: 200 AGEVVGDEIVVNEKV--------N-MISFTGSSKVGELITKKAGF 235
>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase;
NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1
Length = 60
Score = 24.7 bits (53), Expect = 5.7
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
++ + D+R G G + ++ ++ +TE++LR Y K
Sbjct: 6 LFSMLDQRFGG--GEDLLMSGDNGMTEEKLRRYLK 38
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 26.1 bits (57), Expect = 6.1
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 60 LTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPD 97
+ + G+ R++ + + +L +PD
Sbjct: 322 IANESLGATASRLRSELDPASMRQRTRGLATYLHNNPD 359
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET:
SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A
2ouj_A
Length = 251
Score = 25.9 bits (56), Expect = 7.8
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 85 PSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRL 144
F I +++ + +F G+LQ V+G E + G S
Sbjct: 167 VPIQSVFTRDLASIARLRIAKGGVNDNFQGVLQNVRF----VFGTTPEDILRNKGCSSST 222
Query: 145 TENSSLTEDELRGY 158
+ +L + + G
Sbjct: 223 SVLLTLDNNVVNGS 236
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 25.1 bits (55), Expect = 8.8
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 58 FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTH 95
+ K+G + + +I GG N+ E+E L
Sbjct: 77 IFVYKNG--QIEAKFIGIIECGGINLKLEELEWKLAEV 112
>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein; periplasmic binding protein, cellulose,
thermophilic proteins; HET: CBI; 1.50A {Thermotoga
maritima} PDB: 2o7j_A* 3i5o_A*
Length = 592
Score = 25.9 bits (57), Expect = 9.0
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 38 NEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+ + +IL E + + D + DG
Sbjct: 343 DLDMANKILDEAGYKKGPDGVRVGPDGT 370
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 25.4 bits (55), Expect = 10.0
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTH 95
G ++ + + E+ + +++E FL +
Sbjct: 182 GELISNFISVAEQFAEDFFAADVESFLNEY 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.141 0.419
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,679,920
Number of extensions: 159152
Number of successful extensions: 571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 65
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)