RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7295
(165 letters)
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 133 bits (334), Expect = 9e-38
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 6 VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
KVVD D + + Q+GEL +RG M Y N E T ++ +D WL +GD +D
Sbjct: 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 427
Query: 65 FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
+V R+K LI G + P+E+E L HP+I +A
Sbjct: 428 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA----------------------- 464
Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V G+ D+ GE A + L ++TE E+ Y +
Sbjct: 465 GVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ 502
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 123 bits (310), Expect = 3e-34
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 6 VKVVDSDNRMVP--YGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
++V D + R VP GE+ ++G Y+GNEE T+ L D + RTGD V ++
Sbjct: 359 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 418
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
G+ + R+KDLI GGE I ++E+ L HP + EA
Sbjct: 419 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEA---------------------- 456
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V I + E A + E+ K
Sbjct: 457 -AVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG 494
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 123 bits (309), Expect = 6e-34
Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 30/164 (18%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCN--MLRYWGNEEKTKE--ILGEDNWLRTGDQFVLT 61
+VD++ +G L+I +G+ E+ ++ N +GD
Sbjct: 442 PALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD 501
Query: 62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
+DG+ + GR+ D++ G + +EIE L HP I EA
Sbjct: 502 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEA-------------------- 541
Query: 122 PGYCVYGIRDERMGEEIGASIRLTENSSLTED---ELRGYFKGK 162
V GI G+ I A + L + + E+R + + +
Sbjct: 542 ---AVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKE 582
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 110 bits (276), Expect = 1e-29
Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 31/165 (18%)
Query: 4 NIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKE------ILGEDNWLRTGDQ 57
+ +VD + ++ G+ GEL I G YW E T + + + +TGDQ
Sbjct: 339 TQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 398
Query: 58 FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQ 117
DG +GRI + + G + E+E L H I E
Sbjct: 399 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISET---------------- 442
Query: 118 QCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
V +D + + A + ++LR + +
Sbjct: 443 -------AVSVHKDHQEQPYLCAYFVS--EKHIPLEQLRQFSSEE 478
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 109 bits (273), Expect = 3e-29
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 25/161 (15%)
Query: 5 IVKVVDSDNRMVPYGQQGELLIRGYC-NMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
IV++ + +V G++GEL++ + Y + T E L +D W RT D V T +
Sbjct: 334 IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE 392
Query: 64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
G ++GR+ D+II GGENI+PSEIE L T P + E
Sbjct: 393 GTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEV---------------------- 430
Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
V G+ D+R G+ + A + +L+ D L + + +
Sbjct: 431 -VVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL 470
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 108 bits (270), Expect = 8e-29
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 24/159 (15%)
Query: 6 VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
+V D +R V G+ G LL RG + Y+ EE ED + RTGD LT+DG+
Sbjct: 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGY 422
Query: 66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
V GR KD I RGGE + E+E+ L HP + +A
Sbjct: 423 IVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDA-----------------------A 459
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
+ + D+ +GE I + + EL+ + + + +
Sbjct: 460 MVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGL 497
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 106 bits (265), Expect = 6e-28
Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 29/153 (18%)
Query: 6 VKVVDSDNRM--VPYGQQGELLIRGYCN--MLRYWGNEEKTKE--ILGEDNWLRTGDQFV 59
V+D + +G L ++ W N ++ + + + TGD
Sbjct: 430 AVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAA 489
Query: 60 LTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQC 119
KDG+ ++GR+ D++ G + +EIE + P + E
Sbjct: 490 KDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAEC------------------ 531
Query: 120 SIPGYCVYGIRDERMGEEIGASIRLTENSSLTE 152
V G D+ G+ + A + L SS +
Sbjct: 532 -----AVVGFNDDLTGQAVAAFVVLKNKSSWST 559
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 60
Score = 25.1 bits (54), Expect = 1.4
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
++ + D+R G G + ++ ++ +TE++LR Y K
Sbjct: 6 LFSMLDQRFGG--GEDLLMSGDNGMTEEKLRRYLK 38
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8
{Human (Homo sapiens) [TaxId: 9606]}
Length = 219
Score = 26.3 bits (58), Expect = 1.5
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 38 NEEKTKEILGEDNWLRTGDQFV---LTKDGFGSVVGRIKDLII 77
N ++ K IL D T + LT + + V ++KDLI+
Sbjct: 176 NNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLIL 218
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 25.8 bits (56), Expect = 2.8
Identities = 6/38 (15%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 58 FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTH 95
++ K G ++ + + E+ + +++E FL +
Sbjct: 176 LLVYKGG--ELISNFISVAEQFAEDFFAADVESFLNEY 211
>d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea
lamprey (Petromyzon marinus), gamma [TaxId: 7757]}
Length = 262
Score = 24.8 bits (53), Expect = 6.3
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 26 IRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIY 84
+C + G G N+ R + ++GFG + + G E I+
Sbjct: 42 FLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSY---REGFGYLAPTLTTEFWLGNEKIH 97
>d2dsma1 d.372.1.1 (A:1-64) Hypothetical protein YqaI {Bacillus
subtilis [TaxId: 1423]}
Length = 64
Score = 22.9 bits (49), Expect = 9.7
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 50 NWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTT 94
NW + + D +G V + D +I GGE I +E +L
Sbjct: 10 NWHDKLTETDVQIDFYGDEVTPVDDYVIDGGEIILRENLERYLRE 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.141 0.419
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 659,711
Number of extensions: 31615
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 15
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)