Query psy7300
Match_columns 986
No_of_seqs 551 out of 3534
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:17:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2012|consensus 100.0 5E-243 1E-247 2051.8 67.0 931 43-985 5-950 (1013)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 2E-213 3E-218 1957.5 86.1 923 52-985 1-944 (1008)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 2E-114 3E-119 984.0 40.5 408 464-985 1-416 (435)
4 KOG2013|consensus 100.0 1.9E-81 4.1E-86 686.1 21.9 444 455-980 5-472 (603)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.2E-74 2.6E-79 636.6 26.3 302 464-948 1-311 (312)
6 cd01491 Ube1_repeat1 Ubiquitin 100.0 5.3E-71 1.1E-75 600.8 27.4 284 57-431 1-284 (286)
7 cd01484 E1-2_like Ubiquitin ac 100.0 2.6E-63 5.7E-68 528.2 24.3 175 464-645 1-175 (234)
8 cd01488 Uba3_RUB Ubiquitin act 100.0 8.4E-57 1.8E-61 490.0 21.0 242 464-904 1-252 (291)
9 cd01493 APPBP1_RUB Ubiquitin a 100.0 7E-57 1.5E-61 515.8 18.8 362 56-428 1-420 (425)
10 KOG2014|consensus 100.0 1.7E-54 3.8E-59 453.8 21.7 312 52-429 8-322 (331)
11 KOG2015|consensus 100.0 4.4E-52 9.6E-57 436.2 20.7 181 453-643 31-223 (422)
12 KOG2016|consensus 100.0 1.6E-52 3.4E-57 455.9 8.9 369 55-428 7-516 (523)
13 cd01492 Aos1_SUMO Ubiquitin ac 100.0 2.6E-38 5.6E-43 330.3 19.0 148 56-203 2-152 (197)
14 cd01485 E1-1_like Ubiquitin ac 100.0 1.7E-37 3.6E-42 324.6 19.7 147 57-203 1-155 (198)
15 TIGR02356 adenyl_thiF thiazole 100.0 2.4E-37 5.3E-42 324.7 17.4 178 444-630 1-181 (202)
16 PRK08223 hypothetical protein; 100.0 2.8E-37 6E-42 334.5 17.7 180 443-632 8-202 (287)
17 PRK05690 molybdopterin biosynt 100.0 1.5E-36 3.2E-41 327.6 18.4 165 443-616 11-178 (245)
18 cd00757 ThiF_MoeB_HesA_family 100.0 3.5E-36 7.5E-41 322.3 18.5 164 444-616 1-166 (228)
19 PRK07411 hypothetical protein; 100.0 3.9E-36 8.5E-41 344.7 17.7 181 443-632 17-201 (390)
20 PRK08328 hypothetical protein; 100.0 3.3E-36 7.2E-41 322.3 14.8 165 443-616 8-173 (231)
21 PRK05597 molybdopterin biosynt 100.0 8.6E-36 1.9E-40 338.1 17.7 182 443-633 7-192 (355)
22 TIGR02355 moeB molybdopterin s 100.0 4.7E-35 1E-39 314.5 18.8 166 442-616 2-170 (240)
23 cd01492 Aos1_SUMO Ubiquitin ac 100.0 9.8E-35 2.1E-39 303.4 16.3 152 443-604 2-153 (197)
24 PRK05600 thiamine biosynthesis 100.0 9.9E-35 2.1E-39 330.0 17.4 179 443-630 20-205 (370)
25 PRK07878 molybdopterin biosynt 100.0 9.2E-35 2E-39 334.2 17.3 185 433-630 15-207 (392)
26 cd01491 Ube1_repeat1 Ubiquitin 100.0 1.1E-34 2.4E-39 316.3 14.6 181 444-640 1-183 (286)
27 cd01485 E1-1_like Ubiquitin ac 100.0 4.8E-34 1E-38 298.6 16.4 154 444-604 1-156 (198)
28 PRK12475 thiamine/molybdopteri 100.0 1E-33 2.2E-38 318.4 18.3 166 443-617 3-172 (338)
29 PRK07688 thiamine/molybdopteri 100.0 1.6E-33 3.5E-38 316.8 17.4 166 442-616 2-171 (339)
30 KOG2017|consensus 100.0 5.5E-34 1.2E-38 303.3 7.8 191 432-635 38-232 (427)
31 COG0476 ThiF Dinucleotide-util 100.0 3.7E-32 8.1E-37 296.1 17.4 166 443-617 9-177 (254)
32 PRK08762 molybdopterin biosynt 100.0 3.9E-32 8.5E-37 311.6 18.0 182 443-633 114-303 (376)
33 PRK08223 hypothetical protein; 100.0 4.2E-32 9.1E-37 294.2 17.1 161 55-215 7-175 (287)
34 TIGR02356 adenyl_thiF thiazole 100.0 4.9E-32 1.1E-36 284.6 16.5 157 57-213 1-167 (202)
35 PRK05690 molybdopterin biosynt 100.0 1.2E-31 2.7E-36 289.3 17.4 150 55-204 10-165 (245)
36 PRK07878 molybdopterin biosynt 100.0 1.9E-31 4.2E-36 306.7 19.7 160 55-214 20-192 (392)
37 cd00757 ThiF_MoeB_HesA_family 100.0 1.8E-31 3.9E-36 285.8 17.6 149 57-205 1-155 (228)
38 cd01493 APPBP1_RUB Ubiquitin a 100.0 2.4E-31 5.1E-36 305.5 19.0 168 443-618 1-168 (425)
39 cd01489 Uba2_SUMO Ubiquitin ac 100.0 2.7E-31 5.8E-36 293.2 16.7 167 77-243 1-173 (312)
40 PRK05597 molybdopterin biosynt 100.0 1.7E-31 3.6E-36 303.2 15.0 164 52-215 3-175 (355)
41 PRK07411 hypothetical protein; 100.0 3E-31 6.4E-36 304.4 16.3 162 54-215 15-185 (390)
42 PRK14851 hypothetical protein; 100.0 2.6E-31 5.7E-36 320.4 15.9 165 442-616 23-189 (679)
43 PRK14852 hypothetical protein; 100.0 3.6E-31 7.7E-36 321.9 16.3 165 441-615 311-477 (989)
44 TIGR02355 moeB molybdopterin s 100.0 1E-30 2.2E-35 281.0 16.6 148 55-202 2-155 (240)
45 PRK08328 hypothetical protein; 100.0 2.1E-30 4.5E-35 277.6 16.6 151 55-205 7-162 (231)
46 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 1.3E-30 2.7E-35 278.0 14.2 162 460-630 9-194 (244)
47 cd01488 Uba3_RUB Ubiquitin act 100.0 3.3E-29 7.2E-34 273.7 24.0 131 77-207 1-142 (291)
48 PRK05600 thiamine biosynthesis 100.0 3.4E-30 7.3E-35 293.0 16.8 150 54-203 18-173 (370)
49 PRK15116 sulfur acceptor prote 100.0 1.3E-29 2.9E-34 274.0 17.7 183 55-255 10-207 (268)
50 PRK08644 thiamine biosynthesis 100.0 3E-29 6.5E-34 264.9 17.1 161 444-614 10-173 (212)
51 PRK15116 sulfur acceptor prote 100.0 1.9E-29 4.1E-34 272.9 14.7 149 443-600 11-160 (268)
52 PRK07688 thiamine/molybdopteri 100.0 5.7E-29 1.2E-33 280.1 18.3 150 55-204 2-159 (339)
53 PRK12475 thiamine/molybdopteri 100.0 3.7E-29 8.1E-34 281.5 16.6 151 55-205 2-160 (338)
54 PRK07877 hypothetical protein; 100.0 4.8E-29 1E-33 301.2 15.7 184 418-616 65-252 (722)
55 PF00899 ThiF: ThiF family; I 100.0 2.2E-28 4.9E-33 240.8 14.7 134 461-603 1-134 (135)
56 cd00755 YgdL_like Family of ac 100.0 2.7E-28 5.8E-33 259.8 15.5 155 452-614 1-156 (231)
57 cd00755 YgdL_like Family of ac 100.0 9.7E-28 2.1E-32 255.5 17.1 174 65-256 1-182 (231)
58 TIGR01381 E1_like_apg7 E1-like 100.0 7.4E-28 1.6E-32 281.4 17.4 158 452-615 328-519 (664)
59 TIGR01408 Ube1 ubiquitin-activ 100.0 9.3E-28 2E-32 299.8 18.7 154 54-207 398-564 (1008)
60 PRK14852 hypothetical protein; 100.0 6.6E-28 1.4E-32 293.6 16.7 180 26-205 283-468 (989)
61 COG1179 Dinucleotide-utilizing 99.9 9.5E-28 2.1E-32 247.5 14.6 186 52-255 7-202 (263)
62 PRK08762 molybdopterin biosynt 99.9 1.8E-27 3.9E-32 273.1 18.0 150 55-204 113-268 (376)
63 TIGR03603 cyclo_dehy_ocin bact 99.9 4.8E-28 1E-32 269.8 12.4 165 423-615 37-207 (318)
64 COG0476 ThiF Dinucleotide-util 99.9 2.7E-27 5.8E-32 258.0 17.0 163 52-214 5-177 (254)
65 KOG2017|consensus 99.9 4E-28 8.6E-33 258.7 7.6 184 55-238 44-239 (427)
66 cd01484 E1-2_like Ubiquitin ac 99.9 3.5E-26 7.5E-31 243.9 22.3 130 77-206 1-136 (234)
67 PRK14851 hypothetical protein; 99.9 4.9E-27 1.1E-31 283.5 16.8 155 50-204 18-178 (679)
68 cd01483 E1_enzyme_family Super 99.9 7.4E-27 1.6E-31 232.3 15.0 133 464-605 1-133 (143)
69 cd01486 Apg7 Apg7 is an E1-lik 99.9 2.7E-26 5.8E-31 248.5 18.2 181 464-651 1-222 (307)
70 KOG2013|consensus 99.9 6E-27 1.3E-31 258.3 10.2 173 68-242 5-185 (603)
71 PF00899 ThiF: ThiF family; I 99.9 5.9E-26 1.3E-30 223.7 16.2 130 74-203 1-134 (135)
72 PTZ00245 ubiquitin activating 99.9 1.1E-26 2.4E-31 241.7 11.3 119 54-175 5-123 (287)
73 cd01487 E1_ThiF_like E1_ThiF_l 99.9 4.4E-26 9.5E-31 233.8 15.2 142 464-615 1-145 (174)
74 COG1179 Dinucleotide-utilizing 99.9 1.6E-26 3.5E-31 238.4 11.3 149 442-598 10-158 (263)
75 cd01490 Ube1_repeat2 Ubiquitin 99.9 3.4E-25 7.3E-30 253.3 23.3 136 77-212 1-152 (435)
76 PRK08644 thiamine biosynthesis 99.9 9.5E-26 2.1E-30 238.3 14.6 142 58-200 11-157 (212)
77 cd01483 E1_enzyme_family Super 99.9 1.7E-25 3.7E-30 222.5 15.5 129 77-205 1-133 (143)
78 TIGR02354 thiF_fam2 thiamine b 99.9 1.2E-24 2.7E-29 227.7 17.0 155 448-614 7-167 (200)
79 KOG2018|consensus 99.9 1E-24 2.2E-29 229.5 12.3 189 50-256 49-245 (430)
80 PTZ00245 ubiquitin activating 99.9 7.3E-25 1.6E-29 228.2 11.1 115 443-573 7-121 (287)
81 PRK07877 hypothetical protein; 99.9 1.7E-24 3.8E-29 261.8 16.1 151 48-202 80-235 (722)
82 KOG2015|consensus 99.9 7.3E-24 1.6E-28 224.0 18.6 143 65-207 30-185 (422)
83 KOG2014|consensus 99.9 2.2E-24 4.8E-29 227.5 10.3 159 433-605 6-164 (331)
84 TIGR01381 E1_like_apg7 E1-like 99.9 9.4E-24 2E-28 247.2 16.0 177 27-204 282-490 (664)
85 PRK06153 hypothetical protein; 99.9 8.5E-24 1.8E-28 235.8 13.9 130 454-595 168-300 (393)
86 KOG2016|consensus 99.9 2.3E-23 4.9E-28 228.5 11.2 161 441-608 6-166 (523)
87 cd01486 Apg7 Apg7 is an E1-lik 99.9 8E-23 1.7E-27 221.6 14.8 129 77-206 1-152 (307)
88 KOG2336|consensus 99.9 3.4E-23 7.4E-28 214.6 10.5 184 443-636 60-268 (422)
89 cd01487 E1_ThiF_like E1_ThiF_l 99.9 1.7E-22 3.7E-27 207.3 15.5 126 77-203 1-131 (174)
90 TIGR03603 cyclo_dehy_ocin bact 99.9 2E-22 4.4E-27 224.8 11.8 140 55-205 52-197 (318)
91 TIGR02354 thiF_fam2 thiamine b 99.9 6E-22 1.3E-26 207.4 13.9 136 65-202 11-151 (200)
92 KOG2018|consensus 99.8 1.3E-20 2.7E-25 198.8 10.0 148 445-600 57-204 (430)
93 PRK06153 hypothetical protein; 99.8 5E-20 1.1E-24 205.7 14.3 126 67-194 168-299 (393)
94 KOG2012|consensus 99.8 2.3E-20 4.9E-25 217.4 7.9 154 52-205 407-573 (1013)
95 PF02134 UBACT: Repeat in ubiq 99.8 1.9E-20 4.2E-25 160.5 3.2 61 842-904 1-61 (67)
96 TIGR03736 PRTRC_ThiF PRTRC sys 99.8 8.8E-19 1.9E-23 187.3 13.1 129 73-203 9-151 (244)
97 KOG2336|consensus 99.7 5.9E-17 1.3E-21 168.6 10.3 152 49-201 53-225 (422)
98 TIGR03693 ocin_ThiF_like putat 99.5 6.6E-15 1.4E-19 171.6 7.9 146 443-614 104-260 (637)
99 PF10585 UBA_e1_thiolCys: Ubiq 99.5 2.2E-15 4.8E-20 118.0 1.2 45 607-651 1-45 (45)
100 PF09358 UBA_e1_C: Ubiquitin-a 99.5 6.3E-15 1.4E-19 142.2 3.0 61 925-985 1-65 (125)
101 KOG2337|consensus 99.5 1.6E-13 3.4E-18 153.9 10.1 181 25-206 282-494 (669)
102 KOG2337|consensus 99.4 2.4E-12 5.1E-17 144.6 11.4 134 455-593 333-482 (669)
103 TIGR03693 ocin_ThiF_like putat 99.2 6.1E-11 1.3E-15 138.9 11.6 135 55-203 103-251 (637)
104 PF02134 UBACT: Repeat in ubiq 98.4 3E-08 6.4E-13 85.4 -0.4 50 747-798 1-50 (67)
105 COG4015 Predicted dinucleotide 98.3 4.4E-06 9.5E-11 81.9 9.8 122 74-200 17-146 (217)
106 TIGR03882 cyclo_dehyd_2 bacter 97.9 2.1E-05 4.6E-10 82.3 7.0 95 452-614 95-192 (193)
107 PRK06718 precorrin-2 dehydroge 97.6 0.00075 1.6E-08 71.3 13.7 98 72-196 7-104 (202)
108 TIGR01470 cysG_Nterm siroheme 97.6 0.0012 2.6E-08 70.0 14.2 104 73-202 7-110 (205)
109 COG1748 LYS9 Saccharopine dehy 97.4 0.00074 1.6E-08 77.4 10.0 101 463-596 2-102 (389)
110 PRK06718 precorrin-2 dehydroge 97.3 0.0014 3E-08 69.3 11.0 102 459-601 7-108 (202)
111 PF01488 Shikimate_DH: Shikima 97.3 0.00073 1.6E-08 66.7 8.0 78 71-171 8-85 (135)
112 PRK06719 precorrin-2 dehydroge 97.2 0.0062 1.3E-07 61.8 13.9 92 72-193 10-101 (157)
113 PF13241 NAD_binding_7: Putati 97.2 0.0012 2.5E-08 62.1 8.0 88 459-592 4-91 (103)
114 PRK12549 shikimate 5-dehydroge 97.2 0.00099 2.1E-08 74.2 8.6 76 460-569 125-200 (284)
115 COG1748 LYS9 Saccharopine dehy 97.2 0.0015 3.2E-08 75.1 10.0 96 76-196 2-102 (389)
116 PRK12549 shikimate 5-dehydroge 97.2 0.0012 2.7E-08 73.4 9.3 77 73-170 125-201 (284)
117 PF01488 Shikimate_DH: Shikima 97.2 0.001 2.2E-08 65.6 7.7 79 458-572 8-86 (135)
118 PF13241 NAD_binding_7: Putati 97.2 0.00089 1.9E-08 62.9 6.9 91 72-195 4-94 (103)
119 PRK05562 precorrin-2 dehydroge 97.1 0.0077 1.7E-07 64.3 14.2 100 72-197 22-121 (223)
120 PRK06719 precorrin-2 dehydroge 97.0 0.005 1.1E-07 62.4 11.0 85 459-585 10-94 (157)
121 TIGR01470 cysG_Nterm siroheme 96.9 0.0052 1.1E-07 65.1 10.6 95 460-593 7-101 (205)
122 PRK05562 precorrin-2 dehydroge 96.7 0.0079 1.7E-07 64.2 9.9 97 459-594 22-118 (223)
123 PF03435 Saccharop_dh: Sacchar 96.5 0.0072 1.6E-07 70.3 8.7 97 465-592 1-97 (386)
124 COG4015 Predicted dinucleotide 96.3 0.017 3.7E-07 57.3 8.5 119 463-592 19-140 (217)
125 PRK10637 cysG siroheme synthas 96.3 0.05 1.1E-06 64.8 14.0 103 72-200 9-111 (457)
126 COG1648 CysG Siroheme synthase 96.2 0.02 4.3E-07 60.9 9.2 100 72-197 9-108 (210)
127 PRK14027 quinate/shikimate deh 96.2 0.014 2.9E-07 65.1 8.0 79 73-170 125-203 (283)
128 COG1648 CysG Siroheme synthase 95.8 0.016 3.5E-07 61.5 6.2 95 459-593 9-104 (210)
129 COG0373 HemA Glutamyl-tRNA red 95.7 0.015 3.3E-07 67.2 5.7 77 458-573 174-250 (414)
130 PRK14027 quinate/shikimate deh 95.6 0.028 6E-07 62.6 7.5 78 460-569 125-202 (283)
131 PRK13940 glutamyl-tRNA reducta 95.6 0.029 6.3E-07 65.7 7.7 77 72-173 178-254 (414)
132 PRK07819 3-hydroxybutyryl-CoA 95.5 0.022 4.9E-07 63.5 6.4 168 463-654 6-182 (286)
133 TIGR01809 Shik-DH-AROM shikima 95.5 0.035 7.5E-07 61.9 7.7 75 73-170 123-199 (282)
134 PRK04148 hypothetical protein; 95.4 0.15 3.2E-06 50.2 10.8 94 74-196 16-112 (134)
135 TIGR01809 Shik-DH-AROM shikima 95.4 0.035 7.6E-07 61.9 7.4 35 460-499 123-157 (282)
136 PRK14106 murD UDP-N-acetylmura 95.4 0.046 1E-06 64.9 8.9 36 460-501 3-38 (450)
137 COG0569 TrkA K+ transport syst 95.4 0.091 2E-06 56.6 10.2 99 463-594 1-100 (225)
138 COG0373 HemA Glutamyl-tRNA red 95.3 0.03 6.4E-07 64.9 6.7 76 72-173 175-250 (414)
139 PRK12548 shikimate 5-dehydroge 95.3 0.052 1.1E-06 60.7 8.4 84 460-569 124-207 (289)
140 PRK00258 aroE shikimate 5-dehy 95.2 0.055 1.2E-06 60.2 8.1 36 459-499 120-155 (278)
141 PRK14106 murD UDP-N-acetylmura 95.2 0.065 1.4E-06 63.6 9.3 96 73-192 3-98 (450)
142 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.0088 1.9E-07 62.1 1.6 163 464-649 1-170 (180)
143 PRK07066 3-hydroxybutyryl-CoA 95.1 0.057 1.2E-06 61.1 8.0 168 463-654 8-179 (321)
144 PF00056 Ldh_1_N: lactate/mala 95.1 0.052 1.1E-06 54.1 6.7 73 77-170 2-78 (141)
145 PRK00258 aroE shikimate 5-dehy 95.0 0.064 1.4E-06 59.6 8.0 74 73-170 121-194 (278)
146 PF03435 Saccharop_dh: Sacchar 95.0 0.077 1.7E-06 61.7 9.0 91 78-192 1-97 (386)
147 COG0169 AroE Shikimate 5-dehyd 95.0 0.062 1.3E-06 59.6 7.7 75 74-170 125-199 (283)
148 PRK12548 shikimate 5-dehydroge 95.0 0.086 1.9E-06 58.9 8.9 81 73-169 124-207 (289)
149 PRK10637 cysG siroheme synthas 94.9 0.096 2.1E-06 62.4 9.4 102 459-600 9-110 (457)
150 PRK04148 hypothetical protein; 94.8 0.27 5.8E-06 48.4 10.7 94 461-593 16-109 (134)
151 PRK08293 3-hydroxybutyryl-CoA 94.8 0.16 3.5E-06 56.7 10.5 33 463-501 4-36 (287)
152 PRK06130 3-hydroxybutyryl-CoA 94.7 0.25 5.3E-06 55.8 11.8 33 463-501 5-37 (311)
153 COG0569 TrkA K+ transport syst 94.7 0.23 4.9E-06 53.5 10.8 95 76-196 1-102 (225)
154 PRK13940 glutamyl-tRNA reducta 94.7 0.052 1.1E-06 63.7 6.3 77 459-573 178-254 (414)
155 cd05291 HicDH_like L-2-hydroxy 94.6 0.093 2E-06 59.2 7.9 73 76-171 1-78 (306)
156 PRK12749 quinate/shikimate deh 94.5 0.13 2.9E-06 57.4 8.9 80 73-169 122-204 (288)
157 PF00070 Pyr_redox: Pyridine n 94.5 0.054 1.2E-06 48.1 4.7 54 464-534 1-54 (80)
158 COG0169 AroE Shikimate 5-dehyd 94.4 0.11 2.5E-06 57.6 7.9 74 461-569 125-198 (283)
159 PRK05808 3-hydroxybutyryl-CoA 94.3 0.2 4.4E-06 55.6 9.9 33 463-501 4-36 (282)
160 TIGR03882 cyclo_dehyd_2 bacter 94.3 0.025 5.4E-07 59.4 2.4 58 63-120 93-160 (193)
161 cd01065 NAD_bind_Shikimate_DH 94.3 0.078 1.7E-06 53.0 5.8 36 460-500 17-52 (155)
162 PF05237 MoeZ_MoeB: MoeZ/MoeB 94.1 0.025 5.4E-07 51.1 1.6 41 388-428 23-64 (84)
163 cd05213 NAD_bind_Glutamyl_tRNA 94.1 0.21 4.6E-06 56.4 9.5 76 73-174 176-251 (311)
164 cd01080 NAD_bind_m-THF_DH_Cycl 94.0 0.072 1.6E-06 54.7 5.0 35 459-499 41-76 (168)
165 PRK12749 quinate/shikimate deh 94.0 0.12 2.6E-06 57.7 7.2 83 460-569 122-204 (288)
166 TIGR01035 hemA glutamyl-tRNA r 93.9 0.18 3.9E-06 59.4 8.7 76 72-173 177-252 (417)
167 PF02826 2-Hacid_dh_C: D-isome 93.9 0.054 1.2E-06 56.0 3.8 40 458-503 32-71 (178)
168 PF03807 F420_oxidored: NADP o 93.8 0.51 1.1E-05 43.2 9.9 89 77-192 1-93 (96)
169 PF03446 NAD_binding_2: NAD bi 93.8 0.2 4.3E-06 51.0 7.7 117 463-597 2-123 (163)
170 PF03446 NAD_binding_2: NAD bi 93.7 0.095 2.1E-06 53.3 5.1 111 76-197 2-123 (163)
171 cd05213 NAD_bind_Glutamyl_tRNA 93.6 0.17 3.7E-06 57.2 7.5 83 460-581 176-258 (311)
172 PLN02545 3-hydroxybutyryl-CoA 93.6 0.52 1.1E-05 52.8 11.3 33 463-501 5-37 (295)
173 PRK07531 bifunctional 3-hydrox 93.6 0.45 9.8E-06 57.4 11.5 33 463-501 5-37 (495)
174 cd01065 NAD_bind_Shikimate_DH 93.5 0.23 5E-06 49.6 7.6 36 73-108 17-52 (155)
175 PLN00203 glutamyl-tRNA reducta 93.5 0.14 3E-06 61.7 6.8 77 73-172 264-340 (519)
176 KOG4169|consensus 93.4 0.12 2.5E-06 54.8 5.3 116 460-601 3-132 (261)
177 PF01113 DapB_N: Dihydrodipico 93.4 0.39 8.4E-06 46.7 8.7 95 77-193 2-98 (124)
178 PRK00066 ldh L-lactate dehydro 93.4 0.24 5.2E-06 56.1 8.3 75 75-170 6-82 (315)
179 COG1086 Predicted nucleoside-d 93.3 0.3 6.5E-06 58.2 9.0 89 454-569 242-333 (588)
180 PF01118 Semialdhyde_dh: Semia 93.3 0.16 3.4E-06 49.0 5.7 96 464-594 1-98 (121)
181 PLN02602 lactate dehydrogenase 93.2 0.24 5.3E-06 56.8 8.1 73 76-170 38-114 (350)
182 cd05311 NAD_bind_2_malic_enz N 93.2 0.089 1.9E-06 56.7 4.2 37 459-500 22-60 (226)
183 PRK09260 3-hydroxybutyryl-CoA 93.2 0.4 8.7E-06 53.5 9.6 33 463-501 2-34 (288)
184 cd05290 LDH_3 A subgroup of L- 93.2 0.33 7.2E-06 54.8 8.9 71 77-170 1-77 (307)
185 cd05291 HicDH_like L-2-hydroxy 93.2 0.26 5.6E-06 55.6 8.1 34 463-500 1-34 (306)
186 PLN02819 lysine-ketoglutarate 93.1 0.3 6.4E-06 63.2 9.4 104 461-593 568-679 (1042)
187 PF00056 Ldh_1_N: lactate/mala 93.0 0.42 9E-06 47.6 8.4 76 463-571 1-79 (141)
188 PF02254 TrkA_N: TrkA-N domain 93.0 1.6 3.4E-05 41.3 12.1 87 78-192 1-94 (116)
189 cd05293 LDH_1 A subgroup of L- 92.9 0.31 6.8E-06 55.1 8.2 74 75-170 3-80 (312)
190 PRK07530 3-hydroxybutyryl-CoA 92.6 0.37 8.1E-06 53.8 8.2 33 462-500 4-36 (292)
191 PTZ00082 L-lactate dehydrogena 92.6 0.5 1.1E-05 53.7 9.3 79 73-169 4-82 (321)
192 COG0111 SerA Phosphoglycerate 92.5 0.15 3.3E-06 57.8 5.1 35 459-499 139-173 (324)
193 PRK07063 short chain dehydroge 92.5 0.42 9E-06 52.0 8.4 35 459-499 4-39 (260)
194 PRK05476 S-adenosyl-L-homocyst 92.5 0.27 5.8E-06 57.7 7.1 36 460-501 210-245 (425)
195 cd00300 LDH_like L-lactate deh 92.5 0.41 8.9E-06 53.9 8.5 71 78-170 1-75 (300)
196 cd01078 NAD_bind_H4MPT_DH NADP 92.4 0.54 1.2E-05 49.2 8.8 79 72-171 25-107 (194)
197 cd01075 NAD_bind_Leu_Phe_Val_D 92.4 0.77 1.7E-05 48.5 9.9 36 72-108 25-60 (200)
198 PRK06197 short chain dehydroge 92.4 0.32 6.9E-06 54.5 7.4 38 457-500 11-49 (306)
199 PF10585 UBA_e1_thiolCys: Ubiq 92.3 0.12 2.7E-06 40.9 2.9 22 691-712 23-44 (45)
200 cd05311 NAD_bind_2_malic_enz N 92.3 0.15 3.2E-06 55.0 4.5 38 72-109 22-61 (226)
201 PRK00048 dihydrodipicolinate r 92.3 0.66 1.4E-05 51.0 9.6 92 463-598 2-95 (257)
202 PLN02206 UDP-glucuronate decar 92.3 0.68 1.5E-05 55.0 10.3 104 461-600 118-239 (442)
203 PRK05854 short chain dehydroge 92.2 0.37 8E-06 54.4 7.8 36 459-500 11-47 (313)
204 PLN03209 translocon at the inn 92.2 0.94 2E-05 55.0 11.4 108 461-596 79-210 (576)
205 PRK01710 murD UDP-N-acetylmura 92.2 0.53 1.1E-05 56.2 9.4 97 71-191 10-106 (458)
206 PRK11880 pyrroline-5-carboxyla 92.2 0.52 1.1E-05 51.8 8.7 34 463-499 3-36 (267)
207 PF01113 DapB_N: Dihydrodipico 92.2 0.3 6.4E-06 47.5 6.0 98 464-597 2-101 (124)
208 KOG4169|consensus 92.1 0.38 8.3E-06 51.0 7.0 61 73-154 3-64 (261)
209 PRK14192 bifunctional 5,10-met 92.1 0.31 6.7E-06 54.3 6.7 34 459-498 156-190 (283)
210 PRK07634 pyrroline-5-carboxyla 92.1 0.78 1.7E-05 49.7 9.8 82 74-182 3-87 (245)
211 PRK05479 ketol-acid reductoiso 92.0 0.91 2E-05 51.6 10.4 35 458-498 13-47 (330)
212 TIGR00872 gnd_rel 6-phosphoglu 92.0 0.23 4.9E-06 55.8 5.6 117 464-597 2-122 (298)
213 PRK06035 3-hydroxyacyl-CoA deh 91.9 0.46 1E-05 53.1 8.0 33 463-501 4-36 (291)
214 PRK05708 2-dehydropantoate 2-r 91.9 0.52 1.1E-05 53.2 8.3 33 75-108 2-34 (305)
215 COG0300 DltE Short-chain dehyd 91.8 0.52 1.1E-05 51.8 7.9 63 460-548 4-67 (265)
216 PLN00203 glutamyl-tRNA reducta 91.8 0.26 5.6E-06 59.5 6.0 35 460-499 264-298 (519)
217 cd01078 NAD_bind_H4MPT_DH NADP 91.8 0.44 9.6E-06 49.8 7.2 84 459-573 25-109 (194)
218 PRK09599 6-phosphogluconate de 91.7 0.34 7.5E-06 54.4 6.7 118 464-597 2-123 (301)
219 PRK00045 hemA glutamyl-tRNA re 91.7 0.35 7.5E-06 57.2 7.0 75 73-173 180-254 (423)
220 PTZ00117 malate dehydrogenase; 91.6 0.48 1E-05 53.8 7.8 35 74-108 4-38 (319)
221 PRK13403 ketol-acid reductoiso 91.6 0.69 1.5E-05 52.1 8.7 36 457-498 11-46 (335)
222 PRK00066 ldh L-lactate dehydro 91.6 0.63 1.4E-05 52.7 8.6 35 461-499 5-39 (315)
223 PRK11730 fadB multifunctional 91.6 0.5 1.1E-05 59.5 8.6 159 463-649 314-484 (715)
224 PRK00141 murD UDP-N-acetylmura 91.5 0.56 1.2E-05 56.3 8.5 99 67-193 7-105 (473)
225 PLN02206 UDP-glucuronate decar 91.5 0.87 1.9E-05 54.1 10.1 103 74-199 118-238 (442)
226 cd05290 LDH_3 A subgroup of L- 91.4 0.78 1.7E-05 51.8 9.1 32 464-499 1-32 (307)
227 PRK09599 6-phosphogluconate de 91.4 0.56 1.2E-05 52.7 7.9 111 77-196 2-122 (301)
228 PRK09496 trkA potassium transp 91.3 1.1 2.4E-05 53.2 10.8 96 463-592 1-97 (453)
229 PRK11908 NAD-dependent epimera 91.3 1.3 2.7E-05 50.7 10.9 103 463-599 2-123 (347)
230 cd01080 NAD_bind_m-THF_DH_Cycl 91.1 0.43 9.4E-06 49.0 6.1 35 72-107 41-76 (168)
231 PRK05808 3-hydroxybutyryl-CoA 91.1 1.2 2.7E-05 49.4 10.3 33 76-109 4-36 (282)
232 cd00401 AdoHcyase S-adenosyl-L 91.1 0.49 1.1E-05 55.4 7.2 36 460-501 200-235 (413)
233 PRK09242 tropinone reductase; 91.1 0.91 2E-05 49.2 9.0 64 459-547 6-70 (257)
234 PTZ00082 L-lactate dehydrogena 91.0 0.65 1.4E-05 52.8 8.0 37 460-501 4-40 (321)
235 PRK15469 ghrA bifunctional gly 91.0 0.24 5.2E-06 56.0 4.5 90 459-593 133-226 (312)
236 PF02254 TrkA_N: TrkA-N domain 91.0 0.51 1.1E-05 44.7 6.2 85 465-584 1-85 (116)
237 PRK06129 3-hydroxyacyl-CoA deh 91.0 0.41 8.9E-06 54.0 6.4 33 463-501 3-35 (308)
238 PRK01438 murD UDP-N-acetylmura 91.0 0.77 1.7E-05 55.1 9.1 94 73-191 14-107 (480)
239 TIGR02992 ectoine_eutC ectoine 91.0 0.7 1.5E-05 52.6 8.3 75 75-171 129-204 (326)
240 PRK14619 NAD(P)H-dependent gly 90.9 0.65 1.4E-05 52.4 7.9 33 462-500 4-36 (308)
241 PRK11154 fadJ multifunctional 90.8 0.41 8.8E-06 60.3 6.7 160 463-648 310-480 (708)
242 PF03807 F420_oxidored: NADP o 90.8 0.28 6.1E-06 44.9 4.0 91 464-592 1-93 (96)
243 PRK06141 ornithine cyclodeamin 90.8 0.83 1.8E-05 51.7 8.6 79 70-171 120-199 (314)
244 PLN02166 dTDP-glucose 4,6-dehy 90.6 0.91 2E-05 53.9 9.1 103 461-600 119-240 (436)
245 PRK06522 2-dehydropantoate 2-r 90.5 1.5 3.2E-05 49.0 10.3 31 77-108 2-32 (304)
246 cd05293 LDH_1 A subgroup of L- 90.5 0.96 2.1E-05 51.2 8.7 34 462-499 3-36 (312)
247 PRK08618 ornithine cyclodeamin 90.5 0.73 1.6E-05 52.4 7.9 77 461-572 126-203 (325)
248 PLN02350 phosphogluconate dehy 90.5 1.8 3.8E-05 52.1 11.3 116 76-196 7-135 (493)
249 PRK08618 ornithine cyclodeamin 90.4 0.94 2E-05 51.6 8.7 79 73-173 125-204 (325)
250 PRK09496 trkA potassium transp 90.3 1.2 2.7E-05 52.7 10.0 96 460-588 229-324 (453)
251 PF13460 NAD_binding_10: NADH( 90.3 2.4 5.2E-05 43.3 10.9 91 78-198 1-102 (183)
252 PRK15438 erythronate-4-phospha 90.3 0.59 1.3E-05 54.1 6.9 87 459-568 113-206 (378)
253 PLN02427 UDP-apiose/xylose syn 90.3 1.2 2.6E-05 51.7 9.6 114 458-600 10-142 (386)
254 PRK07340 ornithine cyclodeamin 90.1 0.79 1.7E-05 51.7 7.6 77 72-172 122-199 (304)
255 PF13460 NAD_binding_10: NADH( 90.1 3 6.4E-05 42.6 11.3 94 465-596 1-100 (183)
256 TIGR00507 aroE shikimate 5-deh 90.0 0.84 1.8E-05 50.5 7.7 72 74-170 116-187 (270)
257 cd00300 LDH_like L-lactate deh 90.0 0.86 1.9E-05 51.3 7.8 72 465-570 1-75 (300)
258 cd05296 GH4_P_beta_glucosidase 90.0 0.95 2.1E-05 53.3 8.4 111 463-600 1-114 (419)
259 COG1250 FadB 3-hydroxyacyl-CoA 90.0 1 2.2E-05 50.6 8.2 108 463-598 4-122 (307)
260 PRK02705 murD UDP-N-acetylmura 90.0 1.3 2.8E-05 52.8 9.8 94 76-192 1-98 (459)
261 PRK07062 short chain dehydroge 90.0 0.83 1.8E-05 49.8 7.6 63 460-547 6-69 (265)
262 PRK06130 3-hydroxybutyryl-CoA 90.0 1.6 3.5E-05 49.1 10.1 32 76-108 5-36 (311)
263 PRK01438 murD UDP-N-acetylmura 89.9 1.2 2.5E-05 53.5 9.4 35 460-500 14-48 (480)
264 PF01210 NAD_Gly3P_dh_N: NAD-d 89.9 0.45 9.7E-06 48.1 4.9 89 464-583 1-91 (157)
265 PLN02350 phosphogluconate dehy 89.8 1.7 3.6E-05 52.3 10.4 123 463-597 7-136 (493)
266 TIGR03589 PseB UDP-N-acetylglu 89.8 0.99 2.1E-05 51.2 8.2 37 460-500 2-39 (324)
267 cd05298 GH4_GlvA_pagL_like Gly 89.8 1.2 2.6E-05 52.7 9.1 110 463-600 1-113 (437)
268 PLN02602 lactate dehydrogenase 89.8 1.1 2.3E-05 51.6 8.4 33 463-499 38-70 (350)
269 PLN02780 ketoreductase/ oxidor 89.7 1.2 2.6E-05 50.6 8.8 61 462-547 53-114 (320)
270 TIGR00465 ilvC ketol-acid redu 89.7 3.6 7.7E-05 46.7 12.4 33 460-498 1-33 (314)
271 PTZ00325 malate dehydrogenase; 89.6 0.72 1.6E-05 52.3 6.8 77 73-170 6-85 (321)
272 PRK07502 cyclohexadienyl dehyd 89.6 1.5 3.2E-05 49.4 9.4 34 75-108 6-40 (307)
273 TIGR01915 npdG NADPH-dependent 89.6 2.8 6E-05 44.8 11.0 97 77-196 2-103 (219)
274 PRK14619 NAD(P)H-dependent gly 89.5 1.6 3.5E-05 49.2 9.6 33 75-108 4-36 (308)
275 TIGR02622 CDP_4_6_dhtase CDP-g 89.4 1.9 4.1E-05 49.3 10.3 36 460-501 2-38 (349)
276 TIGR01759 MalateDH-SF1 malate 89.4 0.73 1.6E-05 52.4 6.7 76 76-170 4-88 (323)
277 PLN02240 UDP-glucose 4-epimera 89.4 2 4.3E-05 48.9 10.3 33 460-498 3-36 (352)
278 PRK07819 3-hydroxybutyryl-CoA 89.4 1.5 3.2E-05 49.0 9.0 33 76-109 6-38 (286)
279 cd05191 NAD_bind_amino_acid_DH 89.3 0.53 1.2E-05 42.5 4.5 37 459-500 20-56 (86)
280 TIGR00872 gnd_rel 6-phosphoglu 89.3 0.75 1.6E-05 51.7 6.7 111 77-196 2-121 (298)
281 PRK12550 shikimate 5-dehydroge 89.3 0.71 1.5E-05 51.2 6.4 35 75-109 122-156 (272)
282 PLN02819 lysine-ketoglutarate 89.2 1.4 2.9E-05 57.3 9.5 96 74-193 568-679 (1042)
283 PLN02166 dTDP-glucose 4,6-dehy 89.2 1.6 3.6E-05 51.7 9.7 102 75-199 120-239 (436)
284 cd05191 NAD_bind_amino_acid_DH 89.2 0.59 1.3E-05 42.2 4.7 37 72-108 20-56 (86)
285 PF01210 NAD_Gly3P_dh_N: NAD-d 89.1 1.3 2.7E-05 44.9 7.5 99 77-197 1-106 (157)
286 PRK07066 3-hydroxybutyryl-CoA 89.1 2.1 4.6E-05 48.6 10.1 105 76-197 8-122 (321)
287 PTZ00142 6-phosphogluconate de 89.1 0.97 2.1E-05 54.0 7.6 116 76-196 2-129 (470)
288 TIGR03466 HpnA hopanoid-associ 89.1 1.7 3.6E-05 48.7 9.3 31 464-500 2-33 (328)
289 PRK07831 short chain dehydroge 89.1 1.4 3E-05 48.0 8.4 35 459-499 14-50 (262)
290 PRK00048 dihydrodipicolinate r 89.0 2.4 5.2E-05 46.6 10.2 34 76-109 2-37 (257)
291 PTZ00431 pyrroline carboxylate 89.0 2.2 4.7E-05 47.0 9.9 88 74-196 2-92 (260)
292 PF01118 Semialdhyde_dh: Semia 88.9 3.1 6.6E-05 40.1 9.8 95 77-193 1-97 (121)
293 TIGR02992 ectoine_eutC ectoine 88.9 1.2 2.5E-05 50.9 7.9 76 461-571 128-204 (326)
294 PRK04308 murD UDP-N-acetylmura 88.9 1.6 3.5E-05 51.8 9.5 94 73-191 3-96 (445)
295 TIGR00507 aroE shikimate 5-deh 88.9 1.5 3.3E-05 48.4 8.6 33 461-499 116-148 (270)
296 PRK03562 glutathione-regulated 88.9 0.79 1.7E-05 56.9 7.0 89 462-585 400-488 (621)
297 PRK11880 pyrroline-5-carboxyla 88.9 2.5 5.5E-05 46.4 10.4 92 76-196 3-96 (267)
298 PRK13403 ketol-acid reductoiso 88.9 2.2 4.8E-05 48.2 9.8 79 70-179 11-89 (335)
299 PRK06487 glycerate dehydrogena 88.9 0.78 1.7E-05 52.0 6.4 35 459-499 145-179 (317)
300 PRK02006 murD UDP-N-acetylmura 88.8 1.9 4.2E-05 52.0 10.2 95 73-191 5-102 (498)
301 PRK12826 3-ketoacyl-(acyl-carr 88.8 1.2 2.6E-05 47.7 7.6 36 460-501 4-40 (251)
302 COG0039 Mdh Malate/lactate deh 88.8 0.68 1.5E-05 52.0 5.8 33 76-108 1-34 (313)
303 TIGR02440 FadJ fatty oxidation 88.8 0.73 1.6E-05 57.9 6.7 165 463-654 305-480 (699)
304 cd01075 NAD_bind_Leu_Phe_Val_D 88.7 0.5 1.1E-05 49.9 4.4 36 459-500 25-60 (200)
305 PF03949 Malic_M: Malic enzyme 88.7 1.7 3.8E-05 47.4 8.6 106 71-194 21-141 (255)
306 TIGR00873 gnd 6-phosphoglucona 88.7 0.85 1.8E-05 54.5 6.8 122 464-598 1-128 (467)
307 PRK06932 glycerate dehydrogena 88.6 0.81 1.8E-05 51.8 6.4 34 459-498 144-177 (314)
308 PF02558 ApbA: Ketopantoate re 88.6 1.9 4.2E-05 42.8 8.5 84 78-182 1-88 (151)
309 cd00401 AdoHcyase S-adenosyl-L 88.5 2.5 5.4E-05 49.6 10.3 36 73-109 200-235 (413)
310 PRK12550 shikimate 5-dehydroge 88.5 0.79 1.7E-05 50.8 6.0 33 463-500 123-155 (272)
311 PRK05476 S-adenosyl-L-homocyst 88.4 1.8 4E-05 50.9 9.2 36 73-109 210-245 (425)
312 PRK08251 short chain dehydroge 88.4 1.7 3.7E-05 46.6 8.5 61 462-547 2-63 (248)
313 PRK00257 erythronate-4-phospha 88.4 1 2.2E-05 52.3 7.1 35 459-499 113-147 (381)
314 PRK08410 2-hydroxyacid dehydro 88.4 0.81 1.8E-05 51.8 6.1 80 459-561 142-221 (311)
315 PLN02545 3-hydroxybutyryl-CoA 88.3 2.3 4.9E-05 47.6 9.7 33 76-109 5-37 (295)
316 PTZ00431 pyrroline carboxylate 88.3 1.8 4E-05 47.5 8.7 77 461-582 2-78 (260)
317 PRK08655 prephenate dehydrogen 88.2 0.87 1.9E-05 54.0 6.5 90 463-594 1-93 (437)
318 TIGR00465 ilvC ketol-acid redu 88.2 2.8 6E-05 47.6 10.2 33 73-106 1-33 (314)
319 PRK15181 Vi polysaccharide bio 88.2 1.9 4.2E-05 49.3 9.2 36 459-500 12-48 (348)
320 PRK14175 bifunctional 5,10-met 88.1 0.74 1.6E-05 51.2 5.5 77 459-595 155-232 (286)
321 PRK07576 short chain dehydroge 88.1 0.86 1.9E-05 49.9 6.0 37 458-500 5-42 (264)
322 TIGR00873 gnd 6-phosphoglucona 88.1 1.4 3E-05 52.7 8.1 114 77-196 1-126 (467)
323 PF00070 Pyr_redox: Pyridine n 88.1 0.88 1.9E-05 40.3 5.0 54 77-142 1-54 (80)
324 PLN03139 formate dehydrogenase 88.1 0.67 1.5E-05 53.9 5.3 36 459-500 196-231 (386)
325 PRK07417 arogenate dehydrogena 88.0 2.5 5.4E-05 47.0 9.6 31 77-108 2-32 (279)
326 PRK05479 ketol-acid reductoiso 88.0 1.6 3.4E-05 49.7 8.0 79 70-178 12-90 (330)
327 PRK06197 short chain dehydroge 88.0 1.4 3E-05 49.3 7.7 42 65-107 6-48 (306)
328 cd05312 NAD_bind_1_malic_enz N 87.9 2.7 5.8E-05 46.6 9.5 106 71-194 21-140 (279)
329 COG1893 ApbA Ketopantoate redu 87.9 2 4.4E-05 48.5 8.9 83 76-185 1-91 (307)
330 TIGR02437 FadB fatty oxidation 87.8 1.1 2.4E-05 56.5 7.3 111 463-597 314-431 (714)
331 PRK08217 fabG 3-ketoacyl-(acyl 87.8 1.2 2.7E-05 47.7 6.9 35 460-500 3-38 (253)
332 PRK07679 pyrroline-5-carboxyla 87.7 2.8 6E-05 46.6 9.8 82 74-182 2-86 (279)
333 PRK05708 2-dehydropantoate 2-r 87.7 0.56 1.2E-05 52.9 4.3 33 462-500 2-34 (305)
334 PRK05875 short chain dehydroge 87.7 1.8 3.9E-05 47.4 8.3 35 460-500 5-40 (276)
335 PRK13302 putative L-aspartate 87.7 1.6 3.4E-05 48.4 7.7 89 461-591 5-96 (271)
336 PRK07680 late competence prote 87.7 3.2 6.9E-05 45.9 10.2 78 77-181 2-82 (273)
337 PRK00094 gpsA NAD(P)H-dependen 87.7 2.8 6E-05 47.3 10.0 31 77-108 3-33 (325)
338 PF10727 Rossmann-like: Rossma 87.6 1.3 2.8E-05 43.3 6.2 82 73-182 8-89 (127)
339 PRK08339 short chain dehydroge 87.6 1.9 4.1E-05 47.2 8.3 35 460-500 6-41 (263)
340 TIGR01757 Malate-DH_plant mala 87.5 1.4 3.1E-05 51.1 7.5 76 76-170 45-129 (387)
341 PRK09186 flagellin modificatio 87.5 1.5 3.3E-05 47.2 7.4 33 460-498 2-35 (256)
342 PRK05335 tRNA (uracil-5-)-meth 87.3 0.62 1.3E-05 54.7 4.4 34 462-501 2-35 (436)
343 PRK07231 fabG 3-ketoacyl-(acyl 87.3 1.3 2.9E-05 47.4 6.8 36 460-501 3-39 (251)
344 PLN02253 xanthoxin dehydrogena 87.3 1.8 4E-05 47.5 8.1 36 459-500 15-51 (280)
345 COG1893 ApbA Ketopantoate redu 87.2 3.2 7E-05 46.8 10.0 89 463-583 1-89 (307)
346 PRK12490 6-phosphogluconate de 87.2 1.6 3.4E-05 49.1 7.5 111 77-196 2-122 (299)
347 KOG0069|consensus 87.2 3 6.5E-05 47.3 9.6 79 70-180 157-237 (336)
348 PRK06141 ornithine cyclodeamin 87.2 1.5 3.2E-05 49.8 7.3 78 458-571 121-199 (314)
349 PRK08291 ectoine utilization p 87.0 2.1 4.5E-05 48.9 8.4 75 75-171 132-207 (330)
350 PRK05867 short chain dehydroge 87.0 1.9 4.2E-05 46.5 7.9 34 460-499 7-41 (253)
351 PRK07478 short chain dehydroge 87.0 1.3 2.8E-05 47.9 6.5 35 460-500 4-39 (254)
352 PRK07523 gluconate 5-dehydroge 87.0 1.8 3.8E-05 46.9 7.6 36 459-500 7-43 (255)
353 PRK05866 short chain dehydroge 86.9 2 4.4E-05 47.9 8.2 36 459-500 37-73 (293)
354 PRK11908 NAD-dependent epimera 86.9 4.6 9.9E-05 46.1 11.3 32 76-107 2-34 (347)
355 PRK06035 3-hydroxyacyl-CoA deh 86.9 1.7 3.8E-05 48.5 7.7 33 76-109 4-36 (291)
356 PRK06194 hypothetical protein; 86.9 2.1 4.5E-05 47.2 8.2 35 460-500 4-39 (287)
357 cd05292 LDH_2 A subgroup of L- 86.9 2.3 5E-05 48.0 8.6 32 77-108 2-34 (308)
358 PRK02472 murD UDP-N-acetylmura 86.8 2.4 5.1E-05 50.3 9.2 95 73-192 3-98 (447)
359 PRK13304 L-aspartate dehydroge 86.8 2.4 5.3E-05 46.8 8.6 90 463-592 2-91 (265)
360 PTZ00142 6-phosphogluconate de 86.8 0.75 1.6E-05 54.9 4.9 123 463-597 2-130 (470)
361 PRK08291 ectoine utilization p 86.8 1.9 4.1E-05 49.2 8.0 75 462-571 132-207 (330)
362 TIGR01850 argC N-acetyl-gamma- 86.8 2 4.3E-05 49.4 8.1 99 463-595 1-101 (346)
363 PRK03659 glutathione-regulated 86.8 3.1 6.7E-05 51.5 10.4 84 75-186 400-489 (601)
364 PRK07634 pyrroline-5-carboxyla 86.7 3 6.5E-05 45.1 9.2 26 461-486 3-28 (245)
365 PRK04663 murD UDP-N-acetylmura 86.7 1.8 3.9E-05 51.4 8.0 95 71-192 2-98 (438)
366 TIGR02279 PaaC-3OHAcCoADH 3-hy 86.7 1.4 3.1E-05 53.1 7.2 34 462-501 5-38 (503)
367 PLN02427 UDP-apiose/xylose syn 86.7 3.5 7.5E-05 47.9 10.2 37 71-107 10-47 (386)
368 PF10727 Rossmann-like: Rossma 86.7 2.2 4.7E-05 41.8 7.1 83 460-583 8-90 (127)
369 PRK03803 murD UDP-N-acetylmura 86.6 2.1 4.6E-05 50.9 8.6 92 75-191 6-97 (448)
370 PRK04690 murD UDP-N-acetylmura 86.6 2.1 4.6E-05 51.2 8.6 93 73-191 6-98 (468)
371 PF02719 Polysacc_synt_2: Poly 86.5 0.59 1.3E-05 52.0 3.5 80 465-568 1-84 (293)
372 PRK06223 malate dehydrogenase; 86.5 2.8 6.1E-05 47.2 9.1 32 76-107 3-34 (307)
373 PLN02520 bifunctional 3-dehydr 86.5 3 6.5E-05 50.8 9.8 35 73-108 377-411 (529)
374 TIGR01181 dTDP_gluc_dehyt dTDP 86.4 3.5 7.6E-05 45.7 9.8 32 464-499 1-33 (317)
375 PRK06436 glycerate dehydrogena 86.4 0.65 1.4E-05 52.3 3.8 36 459-500 119-154 (303)
376 PRK12921 2-dehydropantoate 2-r 86.4 2.7 5.9E-05 47.0 8.9 100 77-197 2-105 (305)
377 COG1087 GalE UDP-glucose 4-epi 86.3 4.8 0.00011 44.8 10.3 117 463-602 1-126 (329)
378 PRK06523 short chain dehydroge 86.3 1.9 4.2E-05 46.6 7.5 73 459-539 6-80 (260)
379 cd01338 MDH_choloroplast_like 86.2 1 2.3E-05 51.1 5.4 74 76-170 3-87 (322)
380 PLN02695 GDP-D-mannose-3',5'-e 86.2 2.9 6.3E-05 48.4 9.2 33 461-499 20-53 (370)
381 PRK06138 short chain dehydroge 86.2 2.3 5.1E-05 45.6 8.0 34 460-499 3-37 (252)
382 TIGR02441 fa_ox_alpha_mit fatt 86.2 1 2.2E-05 57.0 5.7 163 463-648 336-505 (737)
383 PRK14618 NAD(P)H-dependent gly 86.1 3.1 6.7E-05 47.3 9.3 92 77-194 6-105 (328)
384 cd01337 MDH_glyoxysomal_mitoch 86.0 1.6 3.5E-05 49.3 6.8 73 77-170 2-77 (310)
385 TIGR02632 RhaD_aldol-ADH rhamn 85.9 2.5 5.4E-05 53.1 9.1 84 395-500 359-447 (676)
386 PRK07340 ornithine cyclodeamin 85.9 1.7 3.6E-05 49.1 6.8 76 459-571 122-198 (304)
387 PRK08125 bifunctional UDP-gluc 85.9 3.1 6.8E-05 52.1 9.9 42 454-501 307-350 (660)
388 PLN02240 UDP-glucose 4-epimera 85.8 6 0.00013 45.0 11.5 34 73-107 3-37 (352)
389 PRK06476 pyrroline-5-carboxyla 85.8 3.1 6.7E-05 45.6 8.8 71 77-174 2-74 (258)
390 TIGR00518 alaDH alanine dehydr 85.8 1.5 3.3E-05 50.8 6.6 74 73-169 165-238 (370)
391 PRK06139 short chain dehydroge 85.7 1.7 3.7E-05 49.5 6.9 36 459-500 4-40 (330)
392 PLN02989 cinnamyl-alcohol dehy 85.6 5.8 0.00013 44.6 11.1 33 462-500 5-38 (325)
393 cd01339 LDH-like_MDH L-lactate 85.6 3 6.5E-05 46.8 8.7 31 78-108 1-31 (300)
394 PF02558 ApbA: Ketopantoate re 85.5 1.1 2.3E-05 44.7 4.5 31 465-501 1-31 (151)
395 PRK12367 short chain dehydroge 85.5 1.2 2.6E-05 48.5 5.3 41 455-501 7-48 (245)
396 PF02056 Glyco_hydro_4: Family 85.5 0.71 1.5E-05 48.0 3.3 99 464-588 1-102 (183)
397 PLN02653 GDP-mannose 4,6-dehyd 85.4 3 6.6E-05 47.3 8.8 35 460-500 4-39 (340)
398 PRK06567 putative bifunctional 85.4 1.7 3.6E-05 55.8 7.1 43 460-508 381-423 (1028)
399 COG1063 Tdh Threonine dehydrog 85.4 2.1 4.5E-05 49.3 7.4 33 464-501 171-203 (350)
400 PRK03659 glutathione-regulated 85.3 1.6 3.4E-05 54.1 6.8 90 462-586 400-489 (601)
401 PRK12939 short chain dehydroge 85.3 3.2 7E-05 44.4 8.5 34 460-499 5-39 (250)
402 TIGR01915 npdG NADPH-dependent 85.3 6.4 0.00014 42.0 10.7 31 463-499 1-32 (219)
403 PRK06928 pyrroline-5-carboxyla 85.3 5.7 0.00012 44.1 10.6 79 77-181 3-84 (277)
404 PF01408 GFO_IDH_MocA: Oxidore 85.2 6.4 0.00014 37.2 9.6 32 77-108 2-35 (120)
405 PRK06249 2-dehydropantoate 2-r 85.2 1.8 3.9E-05 48.9 6.7 34 75-109 5-38 (313)
406 PRK12491 pyrroline-5-carboxyla 85.2 6.5 0.00014 43.6 11.0 80 75-182 2-84 (272)
407 PLN00016 RNA-binding protein; 85.2 3.9 8.4E-05 47.4 9.6 114 68-199 45-170 (378)
408 COG1712 Predicted dinucleotide 85.2 3.7 8.1E-05 43.7 8.3 89 463-594 1-92 (255)
409 PLN03209 translocon at the inn 85.1 6 0.00013 48.2 11.3 105 72-196 77-210 (576)
410 TIGR03026 NDP-sugDHase nucleot 85.1 4.3 9.4E-05 47.7 10.1 41 464-510 2-42 (411)
411 PLN02896 cinnamyl-alcohol dehy 85.1 7.4 0.00016 44.5 11.8 34 461-500 9-43 (353)
412 TIGR01771 L-LDH-NAD L-lactate 85.0 1.8 3.9E-05 48.7 6.5 68 80-170 1-73 (299)
413 TIGR01035 hemA glutamyl-tRNA r 85.0 0.98 2.1E-05 53.3 4.6 37 459-500 177-213 (417)
414 PRK12829 short chain dehydroge 84.9 2.4 5.2E-05 45.9 7.4 38 457-500 6-44 (264)
415 PLN02214 cinnamoyl-CoA reducta 84.9 6.5 0.00014 44.9 11.2 107 460-595 8-128 (342)
416 PRK06125 short chain dehydroge 84.9 2.8 6.1E-05 45.5 7.9 35 460-500 5-40 (259)
417 PRK06249 2-dehydropantoate 2-r 84.8 1 2.2E-05 50.9 4.5 34 462-501 5-38 (313)
418 PRK12490 6-phosphogluconate de 84.8 2.1 4.6E-05 48.0 7.0 118 464-597 2-123 (299)
419 PRK06522 2-dehydropantoate 2-r 84.8 1 2.3E-05 50.2 4.6 32 463-500 1-32 (304)
420 PRK05854 short chain dehydroge 84.8 3.5 7.6E-05 46.5 8.8 57 72-148 11-68 (313)
421 PRK03562 glutathione-regulated 84.7 3.6 7.8E-05 51.1 9.5 83 75-185 400-488 (621)
422 PRK06172 short chain dehydroge 84.7 2.3 4.9E-05 45.9 7.0 35 460-500 5-40 (253)
423 PRK13304 L-aspartate dehydroge 84.7 3.9 8.4E-05 45.2 8.9 32 77-108 3-36 (265)
424 PLN02968 Probable N-acetyl-gam 84.7 2.3 5E-05 49.5 7.3 100 461-596 37-137 (381)
425 PRK06940 short chain dehydroge 84.7 2.5 5.5E-05 46.6 7.5 32 462-500 2-33 (275)
426 PRK08229 2-dehydropantoate 2-r 84.6 4.4 9.6E-05 46.1 9.6 100 77-197 4-110 (341)
427 TIGR02853 spore_dpaA dipicolin 84.5 1.1 2.4E-05 50.1 4.5 35 459-499 148-182 (287)
428 PRK14620 NAD(P)H-dependent gly 84.5 3.1 6.6E-05 47.3 8.2 103 77-197 2-109 (326)
429 PLN02688 pyrroline-5-carboxyla 84.4 3.3 7.2E-05 45.4 8.3 145 463-649 1-151 (266)
430 PRK07792 fabG 3-ketoacyl-(acyl 84.4 1.9 4.1E-05 48.5 6.4 35 459-499 9-44 (306)
431 COG0771 MurD UDP-N-acetylmuram 84.4 2 4.4E-05 50.7 6.8 93 72-190 4-97 (448)
432 PTZ00117 malate dehydrogenase; 84.4 1.1 2.5E-05 50.7 4.7 35 461-500 4-38 (319)
433 COG1086 Predicted nucleoside-d 84.4 3.8 8.3E-05 49.2 9.0 95 55-168 229-332 (588)
434 PLN00106 malate dehydrogenase 84.4 3.6 7.8E-05 46.8 8.6 74 74-168 17-93 (323)
435 TIGR03206 benzo_BadH 2-hydroxy 84.3 2.2 4.7E-05 45.8 6.6 35 460-500 1-36 (250)
436 PRK05565 fabG 3-ketoacyl-(acyl 84.3 3.2 6.9E-05 44.3 7.9 34 460-499 3-38 (247)
437 PRK05442 malate dehydrogenase; 84.2 1.4 3E-05 50.2 5.2 32 76-107 5-43 (326)
438 cd05211 NAD_bind_Glu_Leu_Phe_V 84.2 1.3 2.9E-05 47.4 4.8 108 72-196 20-129 (217)
439 PF00670 AdoHcyase_NAD: S-aden 84.2 1.2 2.7E-05 45.2 4.2 38 459-502 20-57 (162)
440 TIGR00137 gid_trmFO tRNA:m(5)U 84.2 1.1 2.4E-05 52.8 4.5 33 463-501 1-33 (433)
441 cd00650 LDH_MDH_like NAD-depen 84.1 2.8 6.1E-05 46.1 7.5 33 465-501 1-36 (263)
442 TIGR00936 ahcY adenosylhomocys 84.1 4.6 9.9E-05 47.3 9.4 93 73-196 193-285 (406)
443 PRK12480 D-lactate dehydrogena 84.1 1.2 2.6E-05 50.9 4.6 36 459-500 143-178 (330)
444 PRK07453 protochlorophyllide o 84.1 2.5 5.5E-05 47.7 7.3 35 460-500 4-39 (322)
445 PRK15076 alpha-galactosidase; 84.0 4.3 9.2E-05 48.1 9.4 108 463-600 2-117 (431)
446 PF00106 adh_short: short chai 84.0 4.4 9.6E-05 40.4 8.3 58 76-152 1-59 (167)
447 PRK08374 homoserine dehydrogen 84.0 3.1 6.7E-05 47.6 7.9 108 463-594 3-123 (336)
448 PRK07814 short chain dehydroge 84.0 2.5 5.4E-05 46.1 7.0 35 460-500 8-43 (263)
449 PRK14192 bifunctional 5,10-met 83.9 2 4.3E-05 47.9 6.2 35 72-107 156-191 (283)
450 PRK10669 putative cation:proto 83.9 3.3 7.1E-05 50.8 8.7 34 462-501 417-450 (558)
451 cd00650 LDH_MDH_like NAD-depen 83.9 2.9 6.3E-05 46.0 7.5 72 78-170 1-79 (263)
452 PLN02657 3,8-divinyl protochlo 83.9 5.3 0.00011 46.7 10.0 34 461-500 59-93 (390)
453 KOG1205|consensus 83.8 4 8.6E-05 45.4 8.3 91 453-568 3-98 (282)
454 PRK04207 glyceraldehyde-3-phos 83.8 3.1 6.8E-05 47.7 7.9 38 557-595 74-111 (341)
455 PRK13529 malate dehydrogenase; 83.7 0.76 1.7E-05 55.2 2.9 134 443-595 258-418 (563)
456 PRK14982 acyl-ACP reductase; P 83.7 1.1 2.3E-05 51.3 3.9 37 459-500 152-190 (340)
457 PRK07531 bifunctional 3-hydrox 83.7 5.5 0.00012 48.2 10.3 33 76-109 5-37 (495)
458 PRK07102 short chain dehydroge 83.6 4 8.8E-05 43.7 8.4 32 463-500 2-34 (243)
459 PRK07063 short chain dehydroge 83.6 4 8.7E-05 44.2 8.4 35 72-107 4-39 (260)
460 PRK07067 sorbitol dehydrogenas 83.6 2.1 4.6E-05 46.3 6.2 36 460-501 4-40 (257)
461 PLN02383 aspartate semialdehyd 83.5 6.5 0.00014 45.2 10.3 93 462-593 7-100 (344)
462 PRK12384 sorbitol-6-phosphate 83.5 3.2 7E-05 44.9 7.6 33 462-500 2-35 (259)
463 PRK06181 short chain dehydroge 83.5 3.9 8.5E-05 44.3 8.3 32 463-500 2-34 (263)
464 PF00106 adh_short: short chai 83.5 2.9 6.3E-05 41.8 6.7 33 463-500 1-34 (167)
465 PRK04308 murD UDP-N-acetylmura 83.5 3.9 8.5E-05 48.5 8.9 36 460-501 3-38 (445)
466 PRK12827 short chain dehydroge 83.4 2.7 5.8E-05 44.9 6.9 33 460-498 4-37 (249)
467 COG1091 RfbD dTDP-4-dehydrorha 83.4 5.6 0.00012 44.2 9.3 98 464-595 2-101 (281)
468 PRK15059 tartronate semialdehy 83.4 3.5 7.6E-05 46.2 7.9 108 77-196 2-121 (292)
469 PRK09242 tropinone reductase; 83.4 5.3 0.00011 43.2 9.2 63 72-154 6-69 (257)
470 PLN03129 NADP-dependent malic 83.3 0.85 1.9E-05 55.0 3.1 110 458-594 317-436 (581)
471 PRK12429 3-hydroxybutyrate deh 83.3 3.7 8.1E-05 44.1 8.0 34 460-499 2-36 (258)
472 PLN02650 dihydroflavonol-4-red 83.3 7.5 0.00016 44.4 10.8 34 461-500 4-38 (351)
473 PLN02520 bifunctional 3-dehydr 83.3 1.9 4.2E-05 52.4 6.2 34 460-499 377-410 (529)
474 PRK06476 pyrroline-5-carboxyla 83.3 2.9 6.3E-05 45.8 7.1 23 464-486 2-24 (258)
475 PF02826 2-Hacid_dh_C: D-isome 83.3 1.7 3.8E-05 44.8 5.1 41 68-109 29-69 (178)
476 PRK13535 erythrose 4-phosphate 83.2 2 4.3E-05 49.0 5.9 147 463-627 2-155 (336)
477 TIGR01772 MDH_euk_gproteo mala 83.2 2.1 4.6E-05 48.4 6.1 71 77-168 1-74 (312)
478 PTZ00317 NADP-dependent malic 83.2 0.88 1.9E-05 54.7 3.1 89 404-501 230-341 (559)
479 PRK13302 putative L-aspartate 83.2 6.1 0.00013 43.8 9.6 36 73-108 4-41 (271)
480 PRK13243 glyoxylate reductase; 83.2 1.3 2.7E-05 50.8 4.3 35 459-499 147-181 (333)
481 PRK07679 pyrroline-5-carboxyla 83.2 3.9 8.4E-05 45.4 8.2 94 461-591 2-97 (279)
482 PRK05872 short chain dehydroge 83.1 4 8.7E-05 45.5 8.3 36 459-500 6-42 (296)
483 PLN02494 adenosylhomocysteinas 83.1 3.9 8.4E-05 48.6 8.4 93 73-196 252-344 (477)
484 PLN00141 Tic62-NAD(P)-related 83.1 8 0.00017 41.9 10.5 35 458-498 13-48 (251)
485 PRK05876 short chain dehydroge 83.1 2.8 6.1E-05 46.2 7.0 35 460-500 4-39 (275)
486 PRK00421 murC UDP-N-acetylmura 83.1 4.2 9.2E-05 48.6 9.0 89 74-191 6-95 (461)
487 CHL00194 ycf39 Ycf39; Provisio 83.0 5.3 0.00011 45.0 9.3 97 463-595 1-111 (317)
488 PRK10537 voltage-gated potassi 82.9 3.1 6.7E-05 48.6 7.5 97 460-568 238-356 (393)
489 PRK00676 hemA glutamyl-tRNA re 82.9 1.3 2.8E-05 50.4 4.2 35 459-498 171-205 (338)
490 PRK13394 3-hydroxybutyrate deh 82.9 3.5 7.6E-05 44.5 7.6 36 459-500 4-40 (262)
491 KOG0069|consensus 82.8 1.2 2.7E-05 50.4 4.0 96 454-593 154-253 (336)
492 PRK12769 putative oxidoreducta 82.8 4.2 9.1E-05 50.9 9.2 34 461-500 326-359 (654)
493 PLN02572 UDP-sulfoquinovose sy 82.8 3.3 7.1E-05 49.3 7.8 36 72-108 44-80 (442)
494 PRK03369 murD UDP-N-acetylmura 82.8 4.7 0.0001 48.6 9.3 89 74-191 11-99 (488)
495 PRK06720 hypothetical protein; 82.7 3.1 6.8E-05 42.7 6.6 35 460-500 14-49 (169)
496 PRK11790 D-3-phosphoglycerate 82.6 1.6 3.4E-05 51.4 5.0 35 459-499 148-182 (409)
497 cd01076 NAD_bind_1_Glu_DH NAD( 82.6 3.8 8.3E-05 44.2 7.5 38 71-108 27-64 (227)
498 cd00762 NAD_bind_malic_enz NAD 82.6 0.9 2E-05 49.5 2.7 38 458-500 21-68 (254)
499 PLN02662 cinnamyl-alcohol dehy 82.5 7.6 0.00017 43.4 10.4 33 462-500 4-37 (322)
500 COG0300 DltE Short-chain dehyd 82.5 8.9 0.00019 42.3 10.3 63 72-155 3-66 (265)
No 1
>KOG2012|consensus
Probab=100.00 E-value=5.1e-243 Score=2051.85 Aligned_cols=931 Identities=60% Similarity=0.994 Sum_probs=903.3
Q ss_pred CCCCCCCchhhhhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccC
Q psy7300 43 GSSATAMDQDIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLS 122 (986)
Q Consensus 43 ~~~~~~~~~~i~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~ 122 (986)
.|....++.+||+++||||++++|.++|+||..++|||.||+|||.||||||+|+||+++||+|...+.++||+.|||++
T Consensus 5 ~~~~~~a~~~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~ 84 (1013)
T KOG2012|consen 5 MMDGNSASQEIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLS 84 (1013)
T ss_pred ccccCcchhhhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeee
Confidence 34455567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCchHHHHHHHHHhhcCCCCEEEeecCCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEE
Q psy7300 123 EKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVF 202 (986)
Q Consensus 123 ~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf 202 (986)
++|||++||+++.++|++||++|.|.++++.++++++++|++||.|..+.+.+.+|+++||+++|.||.+.++|++|++|
T Consensus 85 E~DigknRA~as~~~LaeLN~yV~V~v~t~~~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lF 164 (1013)
T KOG2012|consen 85 EEDIGKNRAEASVEKLAELNNYVPVVVLTGPLTEEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLF 164 (1013)
T ss_pred HHhcCCchHHHHHHHHHHhhcceeeEEecCcccHHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCceEEEcCCCCCCceeEEeceecccCcccccccccccCCCCCceEEEEeeccccccCCCCCeeeEEeCceeeecCC
Q psy7300 203 CDFGNNFTVVDTTGENPVSVIIAGVTREAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQLNGIEPRKVKVLGPYTFSIGD 282 (986)
Q Consensus 203 ~d~g~~f~v~~~~~e~p~~~~i~~i~~~~~~~v~~~~~~~h~~~~gd~v~f~ev~g~~~~n~~~~~~i~~~~~~~~~i~d 282 (986)
||||++|+|.|++|+.|.+.+|++|+++++|+|+|+++.+|++++||.|+|+|++||.++|+|+|++|++++|++|+|+|
T Consensus 165 CDFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~Igd 244 (1013)
T KOG2012|consen 165 CDFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSIGD 244 (1013)
T ss_pred ccCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceecceeeEecCCccccCCChHhhhcCCccccccccccCCchhHHHHHHHHHHHHHHhCCCCCCCCHHhHHHHH
Q psy7300 283 TTKFDEYVSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFAKFESPANLHVAFSTLHNFVKSFGYAPKPWNSADADQFL 362 (986)
Q Consensus 283 ~~~f~~y~~gg~~~qvk~p~~i~f~sL~~~l~~p~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~~~ 362 (986)
++.|.+|..||+++|||+|++++|+||+++|.+|+++.+|+.|+++|.++|++|+||++|.+.|||+|.||+++|+++|+
T Consensus 245 t~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA~~l~ 324 (1013)
T KOG2012|consen 245 TTEFGEYKKGGIFTQVKVPKTISFKSLREALKEPEFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGNEEDAEELV 324 (1013)
T ss_pred ccchhhhhcCceeEEeecCceEecccHHHhhcCCCeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCChhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh---cCCCccHHHHHHHHHhhcCCCCchhhhhhchhHHHHHHhhhCCCccccccccccchhhhcc---ccccc
Q psy7300 363 ALAKESKL---NNGELDEKLLQLFAKTAAGNCNPVNAVIGGIVAQEVMKACSGKFHPIFQWLYFDAVECIDE---NIAET 436 (986)
Q Consensus 363 ~l~~~~~~---~~~~ide~lv~~~~~~~~~el~pvaA~iGGi~AQEvIKaiT~kf~Pi~q~~~fD~~e~l~~---~~~~~ 436 (986)
+++.++.+ ..+++++++|++|+..+++.|.||+|++||+|||||+|++||||+||.||||||+.|+|++ +++++
T Consensus 325 ~l~~~i~~~~~~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP~d~~~~~e~ 404 (1013)
T KOG2012|consen 325 ELARDISEGLGLEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLPSDNLPPSEE 404 (1013)
T ss_pred HHHHHhhhhccccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCCCcCCCCCHH
Confidence 99999876 2458999999999999999999999999999999999999999999999999999999964 68899
Q ss_pred ccccccCccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCC
Q psy7300 437 DAIVNGSRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPH 516 (986)
Q Consensus 437 ~~~~~~~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~ 516 (986)
+|+|+++|||.||++||...|+||.++++++|||||||||+|||+|+||+|||..|.|+|+|||.||.||||||||||+.
T Consensus 405 d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~ 484 (1013)
T KOG2012|consen 405 DCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPW 484 (1013)
T ss_pred HcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecC
Q psy7300 517 DVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLG 596 (986)
Q Consensus 517 diG~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G 596 (986)
|||++|+++|++++..|||+++|+++..++++++|.+|+++||++.|+|.+|+||++||+|++++|+.+.+||+++||.|
T Consensus 485 dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlG 564 (1013)
T KOG2012|consen 485 DVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLG 564 (1013)
T ss_pred ccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeCCCCccccCCCCCCCCCCCcccccCCCCcchhhHHHHHHHhhhHhhhhHHHHHhhhCChhHHHHhhcCCCC
Q psy7300 597 TKGNSQVVVPHLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVMKLPGS 676 (986)
Q Consensus 597 ~~G~v~~~~p~~t~cy~c~~~~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~ 676 (986)
++|++|+++|+.|++|++++|||++++|+||+++||+.++|||+|||+.||++|.++++++|+||++|.|.++.++..+.
T Consensus 565 TKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~yls~p~f~e~sl~~~~~ 644 (1013)
T KOG2012|consen 565 TKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNKYLSDPVFYETSLKLIGE 644 (1013)
T ss_pred CccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCchHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888776665
Q ss_pred Cc-hhhHHHHHHhhhccCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCcCCCCCCCCccccCCCCCcc
Q psy7300 677 QP-LEMLENVKHALVDERPLNIKDCVAWARNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLH 755 (986)
Q Consensus 677 ~~-~~~l~~~~~~l~~~~p~~~~~c~~~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h 755 (986)
++ ++.|+.+.+.|. .+|.+|++|++|||..|+++|+++|+|||++||+|.+|++|+||||||||||+|++||.+|++|
T Consensus 645 ~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~h 723 (1013)
T KOG2012|consen 645 PQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLH 723 (1013)
T ss_pred cchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeecCCCchh
Confidence 54 589999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhHHHHHHHhCCCCCCcHHHHHHHHhccccCcccCCCCCceecchhhhhccCCCchH-HHHHHHHhhCcchhhcc
Q psy7300 756 LQYIYTGANLKAELYGIPQVRNLDAIAQMVKQVVVPEFTPKSGVTIAVTDAQLQNSNGDYDQ-DRLGQLKNELPSIQELQ 834 (986)
Q Consensus 756 ~~fi~~~a~l~a~~~~i~~~~d~~~~~~~~~~~~~~~f~~~~~~~i~~~~~~~~~~~~~~d~-~~~~~l~~~l~~~~~~~ 834 (986)
+.||.+||+|||++|||++..|+..++.+++.+++|+|+|+++++|.+++++....+.++|+ +++.+|...++.++...
T Consensus 724 l~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~~ 803 (1013)
T KOG2012|consen 724 LNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSAAIDQLNKALPSPSVLP 803 (1013)
T ss_pred HHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchHHHHHHhhcccccccCC
Confidence 99999999999999999999999999999999999999999999999999988777777764 58999999999998888
Q ss_pred CCccccceecccCCCchhhHHHHHHhhhhhhccCCCCCChhhHhhhhCCcccccchhhhHHhhhhhhhhc--cCccccce
Q psy7300 835 GLHITPLEFEKDDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVSKKKI--EPHVRALV 912 (986)
Q Consensus 835 ~~~~~~~~FeKDDd~n~hidFi~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAiaTTtA~VaGl~~lEl~--~~~~~~~~ 912 (986)
+++|.|+.||||||+|+|||||+|||||||.||+||++||+++|+|||+||||||||||+|+||+|+|+| +.|+++++
T Consensus 804 ~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e 883 (1013)
T KOG2012|consen 804 SFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLELYKVVDGKRPVE 883 (1013)
T ss_pred CCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhhhhhccCCCchH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999 68888899
Q ss_pred eeccccCCCCCccccce--eeccccccc--CCCCCccccCc-eeeeeeEEEeCCCCCHHHHHHHHHHHcCCeEEEEEe
Q psy7300 913 FELCCQDESGEDVETTI--VAVVAYCWS--KGAPKLKYYDV-EWTLWDRFEINQEMTLKQFLDYFQNEHKLEITILLL 985 (986)
Q Consensus 913 ~~~~~~~~~~~~~rn~f--la~p~~~~~--~~~~~~~~~~~-~~t~wd~~~~~~~~tl~~~~~~~~~~~~~~~~~~~~ 985 (986)
.|||+| ||+|+|.++ .++|+.+++.. +||+||||++.|++||++|++++++++|++|+||++
T Consensus 884 -----------~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~~~~~~gl~i~mls~ 950 (1013)
T KOG2012|consen 884 -----------AYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDHLEEQHGLEITMLSQ 950 (1013)
T ss_pred -----------HhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCHHHHHHHHhhhcCceEEEEec
Confidence 999999 999999999 77788876654 999999999999999999999999999999999985
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.5e-213 Score=1957.45 Aligned_cols=923 Identities=50% Similarity=0.828 Sum_probs=878.2
Q ss_pred hhhhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHH
Q psy7300 52 DIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRA 131 (986)
Q Consensus 52 ~i~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka 131 (986)
++|+++|||||++||.++|+||++++|||+||||||+|+||||+|+|||+|+|+|++.|+++||+||||++++|||++||
T Consensus 1 ~id~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 1 EIDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred CchHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCEEEeecCCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcC--CcEEEeecccceEEEEeecCCce
Q psy7300 132 EVSHTNLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTNSTYDEQLAISQITHAND--IALIIADTRGLFAQVFCDFGNNF 209 (986)
Q Consensus 132 ~a~~~~L~~lNp~V~v~~~~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~--ip~I~~~~~G~~G~vf~d~g~~f 209 (986)
++++++|+++||+|+|+++...++++++++||+||+|.++.+.+..||++||+++ ||||++++.|++|++|+|||++|
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f 160 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEF 160 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCCHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCce
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EEEcCCCCCCceeEEeceecccCcccccccccccCCCCCceEEEEeeccccccCCCCCeeeEEeCceeeecCCccccccc
Q psy7300 210 TVVDTTGENPVSVIIAGVTREAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQLNGIEPRKVKVLGPYTFSIGDTTKFDEY 289 (986)
Q Consensus 210 ~v~~~~~e~p~~~~i~~i~~~~~~~v~~~~~~~h~~~~gd~v~f~ev~g~~~~n~~~~~~i~~~~~~~~~i~d~~~f~~y 289 (986)
.|.+++|+.|.+..|.+|+++++|+|+++++.+|++++||+|+|++++||.++|++++++|+++++++|+|+|++.|.+|
T Consensus 161 ~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i~dt~~~~~y 240 (1008)
T TIGR01408 161 EVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSIGDTTELGPY 240 (1008)
T ss_pred EEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEeccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceeeEecCCccccCCChHhhhcCCccccccccccCCchhHHHHHHHHHHHHHHhCCCCCCCCHHhHHHHHHHHHHhh
Q psy7300 290 VSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFAKFESPANLHVAFSTLHNFVKSFGYAPKPWNSADADQFLALAKESK 369 (986)
Q Consensus 290 ~~gg~~~qvk~p~~i~f~sL~~~l~~p~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~~~~l~~~~~ 369 (986)
++||.++|+|+|+.++|++|+++|..|+++.+|+.|+.++.++|++|+||++|.++|||+|.+++.+|+++++++++++.
T Consensus 241 ~~gG~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~~~~a~~i~ 320 (1008)
T TIGR01408 241 LHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELLKLATSIS 320 (1008)
T ss_pred hcCceEEEEeccccccccCHHHHHcCCcccccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hc----CCCccHHHHHHHHHhhcCCCCchhhhhhchhHHHHHHhhhCCCccccccccccchhhhcc--cccccccccccC
Q psy7300 370 LN----NGELDEKLLQLFAKTAAGNCNPVNAVIGGIVAQEVMKACSGKFHPIFQWLYFDAVECIDE--NIAETDAIVNGS 443 (986)
Q Consensus 370 ~~----~~~ide~lv~~~~~~~~~el~pvaA~iGGi~AQEvIKaiT~kf~Pi~q~~~fD~~e~l~~--~~~~~~~~~~~~ 443 (986)
++ .+.+++++++.|+++++++++||||++||++||||||+|||||+||+||||||++++|+. .+.++++.+.++
T Consensus 321 ~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~~~~ 400 (1008)
T TIGR01408 321 ETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLPRGD 400 (1008)
T ss_pred HhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccchhh
Confidence 63 245899999999999999999999999999999999999999999999999999999964 345567788999
Q ss_pred ccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHH
Q psy7300 444 RYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKS 523 (986)
Q Consensus 444 rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka 523 (986)
|||||+++||.++|++|++++|+||||||+|||+|||||++||++|+.|+|+|+|+|+||.|||||||||+.+|||++||
T Consensus 401 RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka 480 (1008)
T TIGR01408 401 RYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKS 480 (1008)
T ss_pred hhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEEE
Q psy7300 524 ATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQV 603 (986)
Q Consensus 524 ~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~~ 603 (986)
++|+++++++||+++|+++..+++++++.+|+++||+++|+|++|+||+++|+++|++|+.+++|+|++|+.|++|++++
T Consensus 481 ~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v 560 (1008)
T TIGR01408 481 YTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQV 560 (1008)
T ss_pred HHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEE
Confidence 99999999999999999999999987778898999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCccccCCCCCCCCCCCcccccCCCCcchhhHHHHHHHhhhHhhhhHHHHHhhhCCh-hHHHHhhcCCCCCchhhH
Q psy7300 604 VVPHLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDP-NFVERVMKLPGSQPLEML 682 (986)
Q Consensus 604 ~~p~~t~cy~c~~~~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l 682 (986)
++|+.|+||.|+++|+++++|+|||++||+.++|||+|||++|+++|++.++++++|+++| +|.+++.+....+.++.|
T Consensus 561 ~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 640 (1008)
T TIGR01408 561 VVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGL 640 (1008)
T ss_pred EeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 588888877777778889
Q ss_pred HHHHHhhhccCCCChhHhHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCcCCCCCCCCccccCCCCCcchhhHhhh
Q psy7300 683 ENVKHALVDERPLNIKDCVAWARNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLHLQYIYTG 762 (986)
Q Consensus 683 ~~~~~~l~~~~p~~~~~c~~~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~ 762 (986)
+.+++.|...+|.+|++|++|||.+|+++|+++|+|||++||+|++|++|+||||||||||+||+||++|++|++||.+|
T Consensus 641 ~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aa 720 (1008)
T TIGR01408 641 EQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAA 720 (1008)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHH
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCC-CcH--HHHHHHHhccccCcccCCCCCceecchhhhhccCCC-chHHHHHHHHhhCcchhhccC-Cc
Q psy7300 763 ANLKAELYGIPQV-RNL--DAIAQMVKQVVVPEFTPKSGVTIAVTDAQLQNSNGD-YDQDRLGQLKNELPSIQELQG-LH 837 (986)
Q Consensus 763 a~l~a~~~~i~~~-~d~--~~~~~~~~~~~~~~f~~~~~~~i~~~~~~~~~~~~~-~d~~~~~~l~~~l~~~~~~~~-~~ 837 (986)
|+|||++|||++. .+. +.+.++++++.+|+|.|+++++|..+|++.+..... .+.+.++.|..+|.......+ .+
T Consensus 721 anL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 800 (1008)
T TIGR01408 721 AKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFR 800 (1008)
T ss_pred HHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccccCCCC
Confidence 9999999999974 444 899999999999999999999999888765433222 245667778877776554333 67
Q ss_pred cccceecccCCCchhhHHHHHHhhhhhhccCCCCCChhhHhhhhCCcccccchhhhHHhhhhhhhhc--cCccccceeec
Q psy7300 838 ITPLEFEKDDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVSKKKI--EPHVRALVFEL 915 (986)
Q Consensus 838 ~~~~~FeKDDd~n~hidFi~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAiaTTtA~VaGl~~lEl~--~~~~~~~~~~~ 915 (986)
+.|++||||||+|+|||||+|||||||+||+||++|||++|+||||||||||||||+||||||||+| +.|.++++
T Consensus 801 ~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~--- 877 (1008)
T TIGR01408 801 MAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFE--- 877 (1008)
T ss_pred CCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHH---
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 67766788
Q ss_pred cccCCCCCccccce--eeccccccc--CCCCCccccCcee-eeeeEEEeCCCCCHHHHHHHHHHHcCCeEEEEEe
Q psy7300 916 CCQDESGEDVETTI--VAVVAYCWS--KGAPKLKYYDVEW-TLWDRFEINQEMTLKQFLDYFQNEHKLEITILLL 985 (986)
Q Consensus 916 ~~~~~~~~~~rn~f--la~p~~~~~--~~~~~~~~~~~~~-t~wd~~~~~~~~tl~~~~~~~~~~~~~~~~~~~~ 985 (986)
.|||+| ||+|+|.++ .+|++.++.+.+| |+||||++++++||++|+++|+++||++|+||++
T Consensus 878 --------~~kn~f~nlalp~~~~seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~~~~~~~~~v~~is~ 944 (1008)
T TIGR01408 878 --------VYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVKEKYGLEPTMVSQ 944 (1008)
T ss_pred --------HHhHHHHhhccccccccCCCCCCceeecCceeccceEEEEecCCCcHHHHHHHHHHHhCCeeEEEEc
Confidence 999999 999999999 5666666778899 9999999999999999999999999999999985
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=1.6e-114 Score=984.00 Aligned_cols=408 Identities=67% Similarity=1.134 Sum_probs=392.1
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHE 543 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~ 543 (986)
||+||||||+|||+||+||++||++|++|+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEEEEeCCCCccccCCCCCCCCCC
Q psy7300 544 NRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSI 623 (986)
Q Consensus 544 ~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~~~~p~~t~cy~c~~~~~~~~~ 623 (986)
.+++++++.+|+++||+++|+|++|+||+++|+++|++|+.+++|+|++|+.|++|++++++|+.|+||+|..+|+++++
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCcchhhHHHHHHHhhhHhhhhHHHHHhhhCChhHHHHhhcCCCCCchhhHHHHHHhhhccCCCChhHhHHH
Q psy7300 624 PICTLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVMKLPGSQPLEMLENVKHALVDERPLNIKDCVAW 703 (986)
Q Consensus 624 p~Ctl~~~P~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~p~~~~~c~~~ 703 (986)
|+|||++||+.++|||+|||++|+++|++.++++++|+ |++|++|
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~-----------------------------------~~~c~~~ 205 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYL-----------------------------------FEDCVRW 205 (435)
T ss_pred CCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhh-----------------------------------HHHHHHH
Confidence 99999999999999999999999999999887766433 6799999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCCCCcCCCCCCCCccccCCCCCcchhhHhhhHHHHHHHhCCCCCCcHHHHHH
Q psy7300 704 ARNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLHLQYIYTGANLKAELYGIPQVRNLDAIAQ 783 (986)
Q Consensus 704 a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~d~~~~~~ 783 (986)
|+.+|+++|+++|+|||++||+|+++++|+|||+|+||+|+|++||++|++|++||.++|+|+|++||+++
T Consensus 206 a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~--------- 276 (435)
T cd01490 206 ARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPG--------- 276 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999987520
Q ss_pred HHhccccCcccCCCCCceecchhhhhccCCCchHHHHHHHHhhCcchhhccCCccccceecccCCCchhhHHHHHHhhhh
Q psy7300 784 MVKQVVVPEFTPKSGVTIAVTDAQLQNSNGDYDQDRLGQLKNELPSIQELQGLHITPLEFEKDDDTNLHMDFIVAASNLR 863 (986)
Q Consensus 784 ~~~~~~~~~f~~~~~~~i~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~FeKDDd~n~hidFi~aasNLR 863 (986)
||||||+|+|||||+||||||
T Consensus 277 -----------------------------------------------------------FeKDdd~n~h~~fi~a~snlR 297 (435)
T cd01490 277 -----------------------------------------------------------FEKDDDTNFHMDFITAASNLR 297 (435)
T ss_pred -----------------------------------------------------------cccCCchhHHHHHHHHhhhhH
Confidence 999999999999999999999
Q ss_pred hhccCCCCCChhhHhhhhCCcccccchhhhHHhhhhhhhhc--cCccccceeeccccCCCCCccccce--eeccccccc-
Q psy7300 864 AANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVSKKKI--EPHVRALVFELCCQDESGEDVETTI--VAVVAYCWS- 938 (986)
Q Consensus 864 a~ny~I~~~~~~~~k~iAG~IIPAiaTTtA~VaGl~~lEl~--~~~~~~~~~~~~~~~~~~~~~rn~f--la~p~~~~~- 938 (986)
|+||+||++|++++|+||||||||||||||+||||+|+|+| +++..+++ .|||+| ||+|++.++
T Consensus 298 a~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~-----------~~~n~~~nla~p~~~~~~ 366 (435)
T cd01490 298 ARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLE-----------AYKNAFLNLALPFFAFSE 366 (435)
T ss_pred HHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHH-----------HcchHhhhccCCcccccc
Confidence 99999999999999999999999999999999999999999 67776788 999999 999999999
Q ss_pred -CCCCCccc-cCceeeeeeEEEeCCCCCHHHHH-HHHHHHcCCeEEEEEe
Q psy7300 939 -KGAPKLKY-YDVEWTLWDRFEINQEMTLKQFL-DYFQNEHKLEITILLL 985 (986)
Q Consensus 939 -~~~~~~~~-~~~~~t~wd~~~~~~~~tl~~~~-~~~~~~~~~~~~~~~~ 985 (986)
.+||+.+| .+.+||+||||+|++++||++|+ ++|+++||+||+||++
T Consensus 367 p~~~~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~~~~v~~i~~ 416 (435)
T cd01490 367 PIPAPKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKYGLEVTMLSQ 416 (435)
T ss_pred CCCCCccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHhCCeEEEEEe
Confidence 77777787 77899999999999999999999 9999999999999986
No 4
>KOG2013|consensus
Probab=100.00 E-value=1.9e-81 Score=686.07 Aligned_cols=444 Identities=30% Similarity=0.470 Sum_probs=334.8
Q ss_pred HHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhC
Q psy7300 455 NFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMN 534 (986)
Q Consensus 455 ~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~n 534 (986)
+.++.+.++|||||||||||||+||+||++|+ ++|+|||.|+|++||||||||||++|||++||.+|++.++++|
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf-----~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fn 79 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGF-----EEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFN 79 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcC-----CeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhC
Confidence 45788899999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEEEEeCCCCccccC
Q psy7300 535 PNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSS 614 (986)
Q Consensus 535 p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~~~~p~~t~cy~c 614 (986)
|++++.+++.++.+ ..|+..||++||+|++|+||.+||+|||++|...++|||++||.|+.|||++++++.|+||.|
T Consensus 80 pn~~l~~yhanI~e---~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC 156 (603)
T KOG2013|consen 80 PNIKLVPYHANIKE---PKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYEC 156 (603)
T ss_pred CCCceEeccccccC---cchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecc
Confidence 99999999999864 357889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcchhhHHHHHH-HhhhHhhhhHHHHHhhh----CChhHHHHhhcCCCCCchhhHHHHHHhh
Q psy7300 615 SQDPPEKSIPICTLKNFPNAIEHTLQWARD-NFEGIFRQSAENAAEYL----EDPNFVERVMKLPGSQPLEMLENVKHAL 689 (986)
Q Consensus 615 ~~~~~~~~~p~Ctl~~~P~~~~h~i~wa~~-~F~~~F~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~l~~~~~~l 689 (986)
.++|.++++|+||||++|+.++|||.|||+ +|.++|+..... +|- .+++.-++. . ....+......+.-
T Consensus 157 ~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~--q~~~~d~~d~d~~e~~---t-~~~~~~~~et~d~~ 230 (603)
T KOG2013|consen 157 IPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDD--QYGRHDNADPDNCEDM---T-EEEAEAFRETEDLK 230 (603)
T ss_pred cCCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhcccccc--ccccccccCchhhhcc---C-hhhhhhhccchHHH
Confidence 999999999999999999999999999995 799999985442 121 122211111 0 00000000000000
Q ss_pred hccCCCChhHhHHHH-------HHHHHHHHHHHHHHHHhcCCcccccCCCCCCcCCCCCCCCccccCCCCCcchhhHhhh
Q psy7300 690 VDERPLNIKDCVAWA-------RNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLHLQYIYTG 762 (986)
Q Consensus 690 ~~~~p~~~~~c~~~a-------~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~ 762 (986)
++ -+..++|. ..+|.++|-.+|+.||.+ ...|.. +++|.||+|...-+.-
T Consensus 231 --Er---~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~----------e~~wk~-r~~p~pl~~~~~i~~~------- 287 (603)
T KOG2013|consen 231 --ER---RESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGM----------EALWKP-RSRPVPLSIAEVISTS------- 287 (603)
T ss_pred --HH---HHHHHHHhhccCCChhhhhhHHHHHHHHHHHhh----------hhhccC-CCCCCCcchhhccCCc-------
Confidence 00 01223332 357899999999999987 678987 5589999987532110
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHhccccCcccCCCCCceecchhhhhccCC--CchHHHHHHHHhhCcchhhccCCcccc
Q psy7300 763 ANLKAELYGIPQVRNLDAIAQMVKQVVVPEFTPKSGVTIAVTDAQLQNSNG--DYDQDRLGQLKNELPSIQELQGLHITP 840 (986)
Q Consensus 763 a~l~a~~~~i~~~~d~~~~~~~~~~~~~~~f~~~~~~~i~~~~~~~~~~~~--~~d~~~~~~l~~~l~~~~~~~~~~~~~ 840 (986)
.+ . +..+.+.+ +. +. .++++.+.-.. .+....+++|....++.. .--.
T Consensus 288 ---------~~---t---~ns~~q~~--~~--a~------~~~~~v~~v~~~~~vf~~~i~~l~~~~~~~~-----~h~~ 337 (603)
T KOG2013|consen 288 ---------LE---T---INSIVQSI--TS--AQ------LNDQNVWTVDEGAVVFRLSIQALDLRCPKES-----DHWY 337 (603)
T ss_pred ---------cc---c---ccchhhhc--cc--cc------cCCcceeeeccccHHHHHHHHHhcccCCccC-----CCce
Confidence 00 0 00011100 00 00 01111111110 112233444433333321 1134
Q ss_pred ceecccCCCchhhHHHHHHhhhhhhccCCCCCChhhHhhhhCCcccccchhhhHHhhhhhhhhc-cCccccceeeccccC
Q psy7300 841 LEFEKDDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVSKKKI-EPHVRALVFELCCQD 919 (986)
Q Consensus 841 ~~FeKDDd~n~hidFi~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAiaTTtA~VaGl~~lEl~-~~~~~~~~~~~~~~~ 919 (986)
+.|||||.+ .|+||+||+|+||+.|+||+.+.|++|.||||||||||||||+|||++|+|.+ +.+. ++.
T Consensus 338 l~fdKdd~~--~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~-~~~------- 407 (603)
T KOG2013|consen 338 LIFDKDDAS--TMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGG-DFD------- 407 (603)
T ss_pred EEEcCCcHH--HHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhcc-chh-------
Confidence 899999986 99999999999999999999999999999999999999999999999999999 4332 255
Q ss_pred CCCCccccceee-ccc----cccc--CCCCCccccCceeeeeeEEEeC-CCCCHHHHHHHH-HHHcCCeE
Q psy7300 920 ESGEDVETTIVA-VVA----YCWS--KGAPKLKYYDVEWTLWDRFEIN-QEMTLKQFLDYF-QNEHKLEI 980 (986)
Q Consensus 920 ~~~~~~rn~fla-~p~----~~~~--~~~~~~~~~~~~~t~wd~~~~~-~~~tl~~~~~~~-~~~~~~~~ 980 (986)
++|+.|++ -|. ..++ ..||++.|+.|..+. --++++ ..+||++|.|.+ |.++++-+
T Consensus 408 ----~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~-~~l~ln~~~~~~~~L~D~ivk~r~~~~p 472 (603)
T KOG2013|consen 408 ----DCNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSEVP-LVLELNTRKSTLRDLVDKIVKTRLGYLP 472 (603)
T ss_pred ----cceeeEEccCCCccceeecccccCCCCCCCccccccc-eEEEeccccchHHHHHHHHHHHHhccCc
Confidence 67888843 232 1222 899999998886655 347777 599999999985 88888744
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.2e-74 Score=636.62 Aligned_cols=302 Identities=37% Similarity=0.615 Sum_probs=276.5
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHE 543 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~ 543 (986)
||+||||||+|||++||||++|+ |+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 69999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEEEEeCCCCccccCCCCCCCCCC
Q psy7300 544 NRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSI 623 (986)
Q Consensus 544 ~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~~~~p~~t~cy~c~~~~~~~~~ 623 (986)
.++.+. .++.+||+++|+||+|+||.++|+++|++|+.+++|+|++|+.|+.|++++++|+.|+||.|..+++++++
T Consensus 76 ~~i~~~---~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~ 152 (312)
T cd01489 76 ANIKDP---DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTF 152 (312)
T ss_pred ccCCCc---cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcC
Confidence 988642 45679999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred CcccccCCCCcchhhHHHHHHHhhhHhhhhHHHHHhhhCChhHHHHhhcCCCCCchhhHHHHHHhhhccCCCChhHhHHH
Q psy7300 624 PICTLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVMKLPGSQPLEMLENVKHALVDERPLNIKDCVAW 703 (986)
Q Consensus 624 p~Ctl~~~P~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~p~~~~~c~~~ 703 (986)
|+||++++|+.++|||+|||++|+
T Consensus 153 pictI~~~p~~~~hci~~a~~~f~-------------------------------------------------------- 176 (312)
T cd01489 153 PVCTIRSTPSQPIHCIVWAKSLFF-------------------------------------------------------- 176 (312)
T ss_pred CcceecCCCCCCEeehhHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCCCCcCCCCCCCCccccCCCCCcchhhHhhhHHHHHHHhCCCCCCcHHHHHH
Q psy7300 704 ARNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLHLQYIYTGANLKAELYGIPQVRNLDAIAQ 783 (986)
Q Consensus 704 a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~d~~~~~~ 783 (986)
+|+++|+++|++||++ ++||+++| +|+|++|+.
T Consensus 177 ---~~~~~f~~~i~~l~~~----------~~~w~~~~-~p~p~~~~~--------------------------------- 209 (312)
T cd01489 177 ---LFNKVFKDDIERLLSM----------EELWKTRK-PPVPLSWKE--------------------------------- 209 (312)
T ss_pred ---HHHHHHHHHHHHHHhh----------hhhhcCCC-CCCCCCCCC---------------------------------
Confidence 4788999999999987 78999977 999987752
Q ss_pred HHhccccCcccCCCCCceecchhhhhccCCCchHHHHHHHHhhCcchhhccCCccccceecccCCCchhhHHHHHHhhhh
Q psy7300 784 MVKQVVVPEFTPKSGVTIAVTDAQLQNSNGDYDQDRLGQLKNELPSIQELQGLHITPLEFEKDDDTNLHMDFIVAASNLR 863 (986)
Q Consensus 784 ~~~~~~~~~f~~~~~~~i~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~FeKDDd~n~hidFi~aasNLR 863 (986)
++|||||++ ||+||+|+||||
T Consensus 210 ---------------------------------------------------------~~fdkDd~~--~~~~v~~~a~lR 230 (312)
T cd01489 210 ---------------------------------------------------------LTFDKDDQD--ALDFVAAAANLR 230 (312)
T ss_pred ---------------------------------------------------------cCcCCCCHH--HHHHHHHHHHHH
Confidence 249999986 999999999999
Q ss_pred hhccCCCCCChhhHhhhhCCcccccchhhhHHhhhhhhhhc--cCccccceeeccccCCCCCccccce--eecc----cc
Q psy7300 864 AANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVSKKKI--EPHVRALVFELCCQDESGEDVETTI--VAVV----AY 935 (986)
Q Consensus 864 a~ny~I~~~~~~~~k~iAG~IIPAiaTTtA~VaGl~~lEl~--~~~~~~~~~~~~~~~~~~~~~rn~f--la~p----~~ 935 (986)
|+||+||..|++++|+|||||||||||||||||||+++|++ +.+. ++ .|||+| |..+ ++
T Consensus 231 a~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~--~~-----------~~~~~~~~~~~~~~~~~~ 297 (312)
T cd01489 231 SHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGD--KE-----------QCRTVFLNLQPNRRKRLL 297 (312)
T ss_pred HHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhh--HH-----------HhhhHhhhcccCCCCcEe
Confidence 99999999999999999999999999999999999999999 4443 45 789999 3222 22
Q ss_pred ccc-CCCCCccccC
Q psy7300 936 CWS-KGAPKLKYYD 948 (986)
Q Consensus 936 ~~~-~~~~~~~~~~ 948 (986)
... +++|+++|+.
T Consensus 298 ~~~~~~~~n~~c~~ 311 (312)
T cd01489 298 VPCKLDPPNPNCYV 311 (312)
T ss_pred cCCCCCCcCCCCCC
Confidence 223 8889888764
No 6
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=5.3e-71 Score=600.80 Aligned_cols=284 Identities=65% Similarity=1.095 Sum_probs=279.2
Q ss_pred ccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHH
Q psy7300 57 LYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHT 136 (986)
Q Consensus 57 ~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~ 136 (986)
+||||+++||.++|+||++++|||+|+||||+|+||||+++|||+|+|+|+|.|+.+||+||||++++|||++||+++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCEEEeecCCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecCCceEEEcCCC
Q psy7300 137 NLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTTG 216 (986)
Q Consensus 137 ~L~~lNp~V~v~~~~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~~~~~ 216 (986)
+|+++||+|+|+++...++++++.+||+||+|.++.+.+..+|++||+++||||.+++.|++|++|+|||++|.|.|++|
T Consensus 81 ~L~eLNp~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~dfg~~f~~~d~~g 160 (286)
T cd01491 81 RLAELNPYVPVTVSTGPLTTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFTVYDPNG 160 (286)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEecCCCeEEEeCCCC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeceecccCcccccccccccCCCCCceEEEEeeccccccCCCCCeeeEEeCceeeecCCccccccceecceee
Q psy7300 217 ENPVSVIIAGVTREAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQLNGIEPRKVKVLGPYTFSIGDTTKFDEYVSGGIAT 296 (986)
Q Consensus 217 e~p~~~~i~~i~~~~~~~v~~~~~~~h~~~~gd~v~f~ev~g~~~~n~~~~~~i~~~~~~~~~i~d~~~f~~y~~gg~~~ 296 (986)
+.|.++.+.+|+++.+|.|+++++.+|++++||+|+|+|++||+++|+++|++|++++|++|+|+|++.|.+|++||+++
T Consensus 161 e~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i~d~~~~~~y~~gG~~~ 240 (286)
T cd01491 161 EEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSIGDTSSFSEYIRGGIVT 240 (286)
T ss_pred CcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEECcCcCcCccccCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccCCChHhhhcCCccccccccccCCchhHHHHHHHHHHHHHHhCCCCCCCCHHhHHHHHHHHHHhhhcCCCcc
Q psy7300 297 QVKQPKILKFLPLPEALQQPEFVMTDFAKFESPANLHVAFSTLHNFVKSFGYAPKPWNSADADQFLALAKESKLNNGELD 376 (986)
Q Consensus 297 qvk~p~~i~f~sL~~~l~~p~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~~~~l~~~~~~~~~~id 376 (986)
|||
T Consensus 241 qvK----------------------------------------------------------------------------- 243 (286)
T cd01491 241 QVK----------------------------------------------------------------------------- 243 (286)
T ss_pred EEe-----------------------------------------------------------------------------
Confidence 998
Q ss_pred HHHHHHHHHhhcCCCCchhhhhhchhHHHHHHhhhCCCccccccccccchhhhcc
Q psy7300 377 EKLLQLFAKTAAGNCNPVNAVIGGIVAQEVMKACSGKFHPIFQWLYFDAVECIDE 431 (986)
Q Consensus 377 e~lv~~~~~~~~~el~pvaA~iGGi~AQEvIKaiT~kf~Pi~q~~~fD~~e~l~~ 431 (986)
++||||++||++||||||+|||||+|++||||||+.|+|+.
T Consensus 244 --------------~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l~~ 284 (286)
T cd01491 244 --------------LSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECLPE 284 (286)
T ss_pred --------------cccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhcCC
Confidence 79999999999999999999999999999999999999864
No 7
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=2.6e-63 Score=528.17 Aligned_cols=175 Identities=51% Similarity=0.870 Sum_probs=168.0
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHE 543 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~ 543 (986)
||+|||+||+|||++|+|+++|+ |+|+|+|+|+||.|||||||||+++|||++|+++|+++++++||+++|+++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEEEEeCCCCccccCCCCCCCCCC
Q psy7300 544 NRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSI 623 (986)
Q Consensus 544 ~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~~~~p~~t~cy~c~~~~~~~~~ 623 (986)
.++.+. ..|+++|++++|+|++|+||.++|+++|++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++++
T Consensus 76 ~~i~~~--~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~ 153 (234)
T cd01484 76 NKVGPE--QDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNF 153 (234)
T ss_pred ccCChh--hhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCC
Confidence 998642 346788999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred CcccccCCCCcchhhHHHHHHH
Q psy7300 624 PICTLKNFPNAIEHTLQWARDN 645 (986)
Q Consensus 624 p~Ctl~~~P~~~~h~i~wa~~~ 645 (986)
|.||++++|+.|+|||+||+++
T Consensus 154 p~Cti~~~P~~~~hci~~a~~~ 175 (234)
T cd01484 154 PMCTIASMPRLPEHCIEWARML 175 (234)
T ss_pred CccccCCCCCCchHHHHHHHHH
Confidence 9999999999999999998874
No 8
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=8.4e-57 Score=490.04 Aligned_cols=242 Identities=36% Similarity=0.626 Sum_probs=221.0
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHE 543 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~ 543 (986)
||+||||||+|||+||+||++|| |+|+|+|+|+||.|||||||||+.+|||++||++|+++++++||+++|+++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHc--------CCcEEEEeecCCcceEEEEeCCCCccccCC
Q psy7300 544 NRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYS--------RKPLLESGTLGTKGNSQVVVPHLTESYSSS 615 (986)
Q Consensus 544 ~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~--------~~pli~~g~~G~~G~v~~~~p~~t~cy~c~ 615 (986)
.++.+ ++.+|++++|+|++|+||+++|+++|+.|... ++|+|++|+.|+.|++++++|+.|+||+|.
T Consensus 76 ~~i~~-----~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~ 150 (291)
T cd01488 76 GKIQD-----KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECS 150 (291)
T ss_pred cccCc-----hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccC
Confidence 88863 35789999999999999999999999998765 499999999999999999999999999998
Q ss_pred CC--CCCCCCCcccccCCCCcchhhHHHHHHHhhhHhhhhHHHHHhhhCChhHHHHhhcCCCCCchhhHHHHHHhhhccC
Q psy7300 616 QD--PPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVMKLPGSQPLEMLENVKHALVDER 693 (986)
Q Consensus 616 ~~--~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 693 (986)
.+ |++.++|.|||+++|+.++|||+||+.+
T Consensus 151 ~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~------------------------------------------------ 182 (291)
T cd01488 151 LDLFPPQVTFPLCTIANTPRLPEHCIEYASLI------------------------------------------------ 182 (291)
T ss_pred CCCCCCCCCCCcccccCCCCCcchheeeeeee------------------------------------------------
Confidence 76 6778999999999999999999997763
Q ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCcCCCCCCCCccccCCCCCcchhhHhhhHHHHHHHhCCC
Q psy7300 694 PLNIKDCVAWARNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLHLQYIYTGANLKAELYGIP 773 (986)
Q Consensus 694 p~~~~~c~~~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~ 773 (986)
.|+..+ |
T Consensus 183 -----------------------------------------~~~~~~--~------------------------------ 189 (291)
T cd01488 183 -----------------------------------------QWPKEF--P------------------------------ 189 (291)
T ss_pred -----------------------------------------eccccc--C------------------------------
Confidence 111100 0
Q ss_pred CCCcHHHHHHHHhccccCcccCCCCCceecchhhhhccCCCchHHHHHHHHhhCcchhhccCCccccceecccCCCchhh
Q psy7300 774 QVRNLDAIAQMVKQVVVPEFTPKSGVTIAVTDAQLQNSNGDYDQDRLGQLKNELPSIQELQGLHITPLEFEKDDDTNLHM 853 (986)
Q Consensus 774 ~~~d~~~~~~~~~~~~~~~f~~~~~~~i~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~FeKDDd~n~hi 853 (986)
-..||+||. .||
T Consensus 190 ------------------------------------------------------------------~~~~~~d~~--~~~ 201 (291)
T cd01488 190 ------------------------------------------------------------------FVPLDGDDP--EHI 201 (291)
T ss_pred ------------------------------------------------------------------CCcCCCCCH--HHH
Confidence 012677776 499
Q ss_pred HHHHHHhhhhhhccCCCCCChhhHhhhhCCcccccchhhhHHhhhhhhhhc
Q psy7300 854 DFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVSKKKI 904 (986)
Q Consensus 854 dFi~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAiaTTtA~VaGl~~lEl~ 904 (986)
+||+..|+.||++|+|+..+++.++.++||||||||||||||||+++.|++
T Consensus 202 ~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~ 252 (291)
T cd01488 202 EWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEAL 252 (291)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999
No 9
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=7e-57 Score=515.75 Aligned_cols=362 Identities=23% Similarity=0.365 Sum_probs=281.9
Q ss_pred hccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHH
Q psy7300 56 GLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSH 135 (986)
Q Consensus 56 ~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~ 135 (986)
+|||||+||||.+||++|++++|||+|+||+|+|++|||+|+|||+|||+|++.|+.+||++|||++.+|+|++||++++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCEEEeecCCC------CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecCCce
Q psy7300 136 TNLSQLNPYVSTKAYTGEL------SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNNF 209 (986)
Q Consensus 136 ~~L~~lNp~V~v~~~~~~~------~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g~~f 209 (986)
++|++|||+|+++.+.+.+ +++++++||+||+|.++...+..|+++|++++||+|++++.|++|++++++++ |
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~-h 159 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKE-H 159 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECC-e
Confidence 9999999999999988765 35789999999999999989999999999999999999999999999999995 6
Q ss_pred EEEcCCCC---------CCceeEEeceecccCcccccccccccCCCCCceEEEEeeccccc-cCCCCCeeeEEeCcee--
Q psy7300 210 TVVDTTGE---------NPVSVIIAGVTREAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQ-LNGIEPRKVKVLGPYT-- 277 (986)
Q Consensus 210 ~v~~~~~e---------~p~~~~i~~i~~~~~~~v~~~~~~~h~~~~gd~v~f~ev~g~~~-~n~~~~~~i~~~~~~~-- 277 (986)
.|++++++ .|++.+.+.+... .+..++...|+|.|...+.++-++.|.. .++..|.....+..++
T Consensus 160 ~i~et~p~~~~~DLRL~~P~peL~~~~~~~---dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f~~~ 236 (425)
T cd01493 160 TIVESHPDNALEDLRLDNPFPELREHADSI---DLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEFRDL 236 (425)
T ss_pred EEEECCCCCCCcCcccCCCcHHHHHHHHhc---CCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 78888877 4555555555333 2566777789999987766666666643 3333332222211111
Q ss_pred -----eecCCccccccceecceeeEecCCccccCCChHhhhcCCccccccccccCCchhHHHHHHHHHHHHHH-hCCCCC
Q psy7300 278 -----FSIGDTTKFDEYVSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFAKFESPANLHVAFSTLHNFVKS-FGYAPK 351 (986)
Q Consensus 278 -----~~i~d~~~f~~y~~gg~~~qvk~p~~i~f~sL~~~l~~p~~~~~d~~k~~~~~~l~~~~~al~~F~~~-~gr~P~ 351 (986)
....|..+|.+.+.. +...-.|..++ .++++.++++.+. +..+ .+..+|++.+||.+|.++ +|.+|.
T Consensus 237 i~~~~~~~~~eeNf~EA~~~--~~~~~~~~~i~-~~v~~~~~~~~~~--~~~~--~~~~fwi~~~alk~F~~~~~g~lPl 309 (425)
T cd01493 237 VRSLMRSNEDEENFEEAIKA--VNKALNRTKIP-SSVEEIFNDDRCE--NLTS--QSSSFWIMARALKEFVAEENGLLPL 309 (425)
T ss_pred HHHhcccCCCccchHHHHHH--HHHhhCCCCCc-HHHHHHHhchhcc--cCCC--CCchHHHHHHHHHHHHHhcCCCCCC
Confidence 111344555554322 11111122333 4566777666531 1111 234699999999999988 999999
Q ss_pred CCCHH----------------------hHHHHHHHHHHhhh----cCCCccHHHHHHHHHhhc--------CCCCchhhh
Q psy7300 352 PWNSA----------------------DADQFLALAKESKL----NNGELDEKLLQLFAKTAA--------GNCNPVNAV 397 (986)
Q Consensus 352 ~~~~~----------------------D~~~~~~l~~~~~~----~~~~ide~lv~~~~~~~~--------~el~pvaA~ 397 (986)
+++.+ |++++.++++++.. ....|+++.|+.||+.+. .--||+|||
T Consensus 310 ~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~FCkna~~l~~i~~~~~~~~~~~~ 389 (425)
T cd01493 310 PGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGRSLEHNISAF 389 (425)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhhHHhhhcccCCcccchHHHH
Confidence 99754 44555555444332 235789999999998762 223999999
Q ss_pred hhchhHHHHHHhhhCCCccccccccccchhh
Q psy7300 398 IGGIVAQEVMKACSGKFHPIFQWLYFDAVEC 428 (986)
Q Consensus 398 iGGi~AQEvIKaiT~kf~Pi~q~~~fD~~e~ 428 (986)
+||+|||||||+||+||+|++|+|+|||+..
T Consensus 390 ~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~ 420 (425)
T cd01493 390 MGGIAAQEVIKLITKQYVPIDNTFIFDGIRS 420 (425)
T ss_pred HhHHHHHHHHHHHhccccccCCceEEecccc
Confidence 9999999999999999999999999999865
No 10
>KOG2014|consensus
Probab=100.00 E-value=1.7e-54 Score=453.80 Aligned_cols=312 Identities=31% Similarity=0.430 Sum_probs=264.7
Q ss_pred hhhhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHH
Q psy7300 52 DIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRA 131 (986)
Q Consensus 52 ~i~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka 131 (986)
+.+..+|||||||||.++|++|+++||||+|++|+|+|+||||+|+|||++|++|+..|++.|++.|||+..+++|++||
T Consensus 8 e~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~ra 87 (331)
T KOG2014|consen 8 EQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRA 87 (331)
T ss_pred HHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHH
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCEEEeecCCC---CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecCCc
Q psy7300 132 EVSHTNLSQLNPYVSTKAYTGEL---SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNN 208 (986)
Q Consensus 132 ~a~~~~L~~lNp~V~v~~~~~~~---~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g~~ 208 (986)
+++.++++.|||.|+|.+..+++ +++||.+||+||.+..+.+...++|++||+++|+|+.++++|++||+|+|+++|
T Consensus 88 eas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~~h 167 (331)
T KOG2014|consen 88 EASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQEH 167 (331)
T ss_pred HHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehhhh
Confidence 99999999999999999998876 678999999999999999999999999999999999999999999999999885
Q ss_pred eEEEcCCCCCCceeEEeceecccCcccccccccccCCCCCceEEEEeeccccccCCCCCeeeEEeCceeeecCCcccccc
Q psy7300 209 FTVVDTTGENPVSVIIAGVTREAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQLNGIEPRKVKVLGPYTFSIGDTTKFDE 288 (986)
Q Consensus 209 f~v~~~~~e~p~~~~i~~i~~~~~~~v~~~~~~~h~~~~gd~v~f~ev~g~~~~n~~~~~~i~~~~~~~~~i~d~~~f~~ 288 (986)
.+..... .+ ..++. .+..++ |++
T Consensus 168 -~y~~~~~-~~-------------~~~~~---------------------------~k~~k~-----------~~~---- 190 (331)
T KOG2014|consen 168 -KYLEEKT-KV-------------AKVSQ---------------------------TKRAKV-----------DET---- 190 (331)
T ss_pred -hhhhhcc-cc-------------ccccc---------------------------ccceee-----------eec----
Confidence 3222100 00 00000 000000 000
Q ss_pred ceecceeeEecCCccccCCChHhhhcCCccccccccccCCchhHHHHHHHHHHHHHHhCCCCCCCCHHhHHHHHHHHHHh
Q psy7300 289 YVSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFAKFESPANLHVAFSTLHNFVKSFGYAPKPWNSADADQFLALAKES 368 (986)
Q Consensus 289 y~~gg~~~qvk~p~~i~f~sL~~~l~~p~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~~~~l~~~~ 368 (986)
...-+...+.|+|++++|+.++- .....+..+..+.|.+++++..|.+.+||.|+....+|++.++.|.+++
T Consensus 191 -------~~~~vk~~~~~~~~~Eal~~~~~-~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~el 262 (331)
T KOG2014|consen 191 -------ETEWVKRKVVFPSVKEALSVDWT-KKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGETSEEDLERLLQIRNEL 262 (331)
T ss_pred -------cceehhhhhcccCHHHHHhcccc-hhhhhhhhccCcceehHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhh
Confidence 00112346779999999987752 2233456677889999999999999999999966789999999999998
Q ss_pred hhcCCCccHHHHHHHHHhhcCCCCchhhhhhchhHHHHHHhhhCCCccccccccccchhhh
Q psy7300 369 KLNNGELDEKLLQLFAKTAAGNCNPVNAVIGGIVAQEVMKACSGKFHPIFQWLYFDAVECI 429 (986)
Q Consensus 369 ~~~~~~ide~lv~~~~~~~~~el~pvaA~iGGi~AQEvIKaiT~kf~Pi~q~~~fD~~e~l 429 (986)
.+...-++++++ +|..+.+.+++|+||++||++||||||+||++-.|++|+|||||+++.
T Consensus 263 l~s~~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 263 LESETIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred ccccccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 874455667777 999999999999999999999999999999999999999999999875
No 11
>KOG2015|consensus
Probab=100.00 E-value=4.4e-52 Score=436.25 Aligned_cols=181 Identities=38% Similarity=0.642 Sum_probs=170.2
Q ss_pred CHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHh
Q psy7300 453 GKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKV 532 (986)
Q Consensus 453 G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~ 532 (986)
+++..+-|.+.+|+|+||||+|||++||||++|+ +.++|||||+|+.|||||||||++.|||++||++||+.+++
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF-----~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~ 105 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGF-----RQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNR 105 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhcc-----ceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHh
Confidence 6788899999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred hCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHc---C-------CcEEEEeecCCcceEE
Q psy7300 533 MNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYS---R-------KPLLESGTLGTKGNSQ 602 (986)
Q Consensus 533 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~---~-------~pli~~g~~G~~G~v~ 602 (986)
..|+..|.+|..++.+ ++.+|+++||+||+++|+++||+|+|.+.++. | +|+||+|+.|++||+.
T Consensus 106 Rvp~~~v~~h~~kIqd-----~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~ar 180 (422)
T KOG2015|consen 106 RVPGCVVVPHRQKIQD-----KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHAR 180 (422)
T ss_pred hCCCcEEeeeecchhc-----CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeE
Confidence 9999999999999863 46799999999999999999999999887652 3 6999999999999999
Q ss_pred EEeCCCCccccCCCC--CCCCCCCcccccCCCCcchhhHHHHH
Q psy7300 603 VVVPHLTESYSSSQD--PPEKSIPICTLKNFPNAIEHTLQWAR 643 (986)
Q Consensus 603 ~~~p~~t~cy~c~~~--~~~~~~p~Ctl~~~P~~~~h~i~wa~ 643 (986)
+++|+.|.|+.|+.| |++.++|+|||.+.|..|+|||+|.+
T Consensus 181 vI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~ 223 (422)
T KOG2015|consen 181 VIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVK 223 (422)
T ss_pred EEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhh
Confidence 999999999999866 78889999999999999999999844
No 12
>KOG2016|consensus
Probab=100.00 E-value=1.6e-52 Score=455.86 Aligned_cols=369 Identities=22% Similarity=0.340 Sum_probs=283.4
Q ss_pred hhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHH
Q psy7300 55 EGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVS 134 (986)
Q Consensus 55 ~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~ 134 (986)
..+||||+|+||.+||..|..++||++|||++|+|++|||+|+|||+||++|...|..+|++.|||+..+++|++||+++
T Consensus 7 ~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~ 86 (523)
T KOG2016|consen 7 KTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEAT 86 (523)
T ss_pred hhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCEEEeecCCC------CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecCCc
Q psy7300 135 HTNLSQLNPYVSTKAYTGEL------SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNN 208 (986)
Q Consensus 135 ~~~L~~lNp~V~v~~~~~~~------~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g~~ 208 (986)
++.|+++||+|..+...+.. +++++.+|++||.+..+.+...++.++||+++||++.+.++|++|++++...+
T Consensus 87 ~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikE- 165 (523)
T KOG2016|consen 87 LEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKE- 165 (523)
T ss_pred HHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeee-
Confidence 99999999999998877654 56799999999999999999999999999999999999999999999999988
Q ss_pred eEEEcCCCC---------CCceeEEeceecccCcccccccccccCCCCCceEEEEeecccc-ccCCCCCeeeEEe-----
Q psy7300 209 FTVVDTTGE---------NPVSVIIAGVTREAEGVVTCLDETRHGFEDGDYVTFSEVQGMT-QLNGIEPRKVKVL----- 273 (986)
Q Consensus 209 f~v~~~~~e---------~p~~~~i~~i~~~~~~~v~~~~~~~h~~~~gd~v~f~ev~g~~-~~n~~~~~~i~~~----- 273 (986)
|++++++++ +|++.+++++...+ ++.++...|.+.|...+.++.++.+. +.|+..|.++..+
T Consensus 166 H~iieshPD~~~~DLRL~nPwpeLi~~v~s~d---Ld~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk~fkd 242 (523)
T KOG2016|consen 166 HTIIESHPDNPLDDLRLDNPWPELIEYVDSTD---LDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKKEFKD 242 (523)
T ss_pred ccccccCCCCcccccccCCCcHHHHHHHhhcC---ccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence 788888877 46788888886554 66677777888777655444333331 2222122111000
Q ss_pred -----------------------------------------------------------------------CceeeecCC
Q psy7300 274 -----------------------------------------------------------------------GPYTFSIGD 282 (986)
Q Consensus 274 -----------------------------------------------------------------------~~~~~~i~d 282 (986)
-|.+-.++|
T Consensus 243 ~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~GtlPD 322 (523)
T KOG2016|consen 243 LIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRGTLPD 322 (523)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCCCCCc
Confidence 011111122
Q ss_pred cccc-ccceecce--------------------eeEecC-Cc------------------cccCCChHhhhcCCcc----
Q psy7300 283 TTKF-DEYVSGGI--------------------ATQVKQ-PK------------------ILKFLPLPEALQQPEF---- 318 (986)
Q Consensus 283 ~~~f-~~y~~gg~--------------------~~qvk~-p~------------------~i~f~sL~~~l~~p~~---- 318 (986)
+++- ..|++-.. .+++.+ |. .+.|+.+++... |..
T Consensus 323 M~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~-~s~~~~~ 401 (523)
T KOG2016|consen 323 MTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYE-KSITELI 401 (523)
T ss_pred cccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhc-ccchhhh
Confidence 2111 11211110 000001 11 233566665555 221
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHhCCCCCCCC-HHhHHHHHHHHHHhhh----cCCCccHHHHHHHHHhhcCCCCc
Q psy7300 319 VMTDFAKFESPANLHVAFSTLHNFVKSFGYAPKPWN-SADADQFLALAKESKL----NNGELDEKLLQLFAKTAAGNCNP 393 (986)
Q Consensus 319 ~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~-~~D~~~~~~l~~~~~~----~~~~ide~lv~~~~~~~~~el~p 393 (986)
..++.........+|+++||+++|..++|++|+.+. ..|+..+..++..+.. ....+.++.+.||||+.++|+|.
T Consensus 402 ~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~~~v~d~~i~E~cR~gaaElH~ 481 (523)
T KOG2016|consen 402 KYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDGNAVTDDAIHEICRFGAAELHV 481 (523)
T ss_pred hhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCcccCcHHHHHHHHhcCCchhHH
Confidence 111111223346799999999999999999999332 5788888888776554 22467889999999999999999
Q ss_pred hhhhhhchhHHHHHHhhhCCCccccccccccchhh
Q psy7300 394 VNAVIGGIVAQEVMKACSGKFHPIFQWLYFDAVEC 428 (986)
Q Consensus 394 vaA~iGGi~AQEvIKaiT~kf~Pi~q~~~fD~~e~ 428 (986)
|+||+||+|||||||+||+||+||+|+|+|||+..
T Consensus 482 VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~ 516 (523)
T KOG2016|consen 482 VSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQ 516 (523)
T ss_pred HHHHHhhHHHHHHHHHHHhceecccceeEeccccc
Confidence 99999999999999999999999999999999865
No 13
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=2.6e-38 Score=330.32 Aligned_cols=148 Identities=39% Similarity=0.629 Sum_probs=141.5
Q ss_pred hccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHH
Q psy7300 56 GLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSH 135 (986)
Q Consensus 56 ~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~ 135 (986)
++||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|+|++||++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~ 81 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCEEEeecCCCC---HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEe
Q psy7300 136 TNLSQLNPYVSTKAYTGELS---EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFC 203 (986)
Q Consensus 136 ~~L~~lNp~V~v~~~~~~~~---~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~ 203 (986)
++|+++||+++|+.+...++ ++++++||+||+|.++.+.+..++++|+++++|||++++.|++|++|+
T Consensus 82 ~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~ 152 (197)
T cd01492 82 ERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFA 152 (197)
T ss_pred HHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEE
Confidence 99999999999999876653 478899999999999999999999999999999999999999998753
No 14
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.7e-37 Score=324.64 Aligned_cols=147 Identities=35% Similarity=0.599 Sum_probs=139.9
Q ss_pred ccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCc--CccCchHHHHH
Q psy7300 57 LYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSE--KDVGRNRAEVS 134 (986)
Q Consensus 57 ~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~--~diGk~Ka~a~ 134 (986)
+||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+++|++||||+++ +|+|++||+++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHhhcCCCCEEEeecCCCC------HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEe
Q psy7300 135 HTNLSQLNPYVSTKAYTGELS------EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFC 203 (986)
Q Consensus 135 ~~~L~~lNp~V~v~~~~~~~~------~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~ 203 (986)
+++|+++||+|+|+++...+. ++++++||+||+|.++...+..++++|++++||||++++.|++|++|+
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~ 155 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFF 155 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 999999999999999876652 468899999999999999999999999999999999999999998753
No 15
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=2.4e-37 Score=324.74 Aligned_cols=178 Identities=28% Similarity=0.462 Sum_probs=163.7
Q ss_pred ccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCc
Q psy7300 444 RYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQP 521 (986)
Q Consensus 444 rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~ 521 (986)
||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|+ |+|+|+|.|.|+.+||+|||||+++|+|++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~ 75 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDDHVDLSNLQRQILFTEEDVGRP 75 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCCEEcccchhhhhccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceE
Q psy7300 522 KSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNS 601 (986)
Q Consensus 522 Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v 601 (986)
|+++++++++++||+++|+++...+.+++. .++++++|+||+|+||.++|.++++.|+++++|+|.+|+.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~ 151 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTAENL----ELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQL 151 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEE
Confidence 999999999999999999999988864321 4688999999999999999999999999999999999999999999
Q ss_pred EEEeCC-CCccccCCCCCCCCCCCcccccC
Q psy7300 602 QVVVPH-LTESYSSSQDPPEKSIPICTLKN 630 (986)
Q Consensus 602 ~~~~p~-~t~cy~c~~~~~~~~~p~Ctl~~ 630 (986)
.++.|+ .++||.|.....+...|.|+...
T Consensus 152 ~~~~p~~~~~c~~c~~~~~~~~~~~~~~~~ 181 (202)
T TIGR02356 152 MVFDPGGEGPCLRCLFPDIADTGPSCATAG 181 (202)
T ss_pred EEEeCCCCCCChhhcCCCCcccCCCCccCC
Confidence 999998 79999996543334466776544
No 16
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=2.8e-37 Score=334.52 Aligned_cols=180 Identities=23% Similarity=0.344 Sum_probs=165.8
Q ss_pred CccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcH
Q psy7300 443 SRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPK 522 (986)
Q Consensus 443 ~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K 522 (986)
+||.||+.++|.++|++|++++|+||||||+||+++++||++|| |+|+|+|.|+||.||||||++|+.+|||++|
T Consensus 8 ~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-----G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~K 82 (287)
T PRK08223 8 EAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-----GKFTIADFDVFELRNFNRQAGAMMSTLGRPK 82 (287)
T ss_pred HHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-----CeEEEEeCCCcchhccccccCcChhHCCCcH
Confidence 69999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCH--HHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 523 SATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNV--EARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 523 a~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~--~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
+++|+++++++||.++|+++...+.+++. +++++++|+||+|+||+ ++|.++|+.|+++++|+|.+++.|+.|+
T Consensus 83 ve~a~~~l~~iNP~v~V~~~~~~l~~~n~----~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gq 158 (287)
T PRK08223 83 AEVLAEMVRDINPELEIRAFPEGIGKENA----DAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTA 158 (287)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccCccCH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEE
Confidence 99999999999999999999999986543 57889999999999986 8999999999999999999999999999
Q ss_pred EEEEeCCCCccccCC--C--CCCC---------CCCCcccccCCC
Q psy7300 601 SQVVVPHLTESYSSS--Q--DPPE---------KSIPICTLKNFP 632 (986)
Q Consensus 601 v~~~~p~~t~cy~c~--~--~~~~---------~~~p~Ctl~~~P 632 (986)
+.++.|+ ++||+|- . .+++ ...|.|.-.++.
T Consensus 159 v~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 159 LLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred EEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 9999886 7999993 2 1222 467888777766
No 17
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=1.5e-36 Score=327.58 Aligned_cols=165 Identities=29% Similarity=0.476 Sum_probs=156.5
Q ss_pred Cccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCC
Q psy7300 443 SRYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ 520 (986)
Q Consensus 443 ~rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 520 (986)
+||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||+
T Consensus 11 ~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~ 85 (245)
T PRK05690 11 LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDTVSLSNLQRQVLHDDATIGQ 85 (245)
T ss_pred HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEECcchhhhhhcCChhhCCC
Confidence 799999987 99999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 521 PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 521 ~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
+|+++++++++++||+++|+++...+.+++ .+++++++|+||+|+||+++|.+++++|+++++|+|.+++.|+.|+
T Consensus 86 ~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~----~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~ 161 (245)
T PRK05690 86 PKVESARAALARINPHIAIETINARLDDDE----LAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQ 161 (245)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeccCCHHH----HHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCce
Confidence 999999999999999999999999886432 1568999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC-CccccCCC
Q psy7300 601 SQVVVPHL-TESYSSSQ 616 (986)
Q Consensus 601 v~~~~p~~-t~cy~c~~ 616 (986)
+.++.|+. ++||.|..
T Consensus 162 v~~~~~~~~~~c~~c~~ 178 (245)
T PRK05690 162 VTVFTYQDDEPCYRCLS 178 (245)
T ss_pred EEEEecCCCCceeeecc
Confidence 99999875 79999954
No 18
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=3.5e-36 Score=322.26 Aligned_cols=164 Identities=34% Similarity=0.545 Sum_probs=156.4
Q ss_pred ccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCc
Q psy7300 444 RYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQP 521 (986)
Q Consensus 444 rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~ 521 (986)
||+||+++ ||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.|+.+||+||+||+++|+|++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 75 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDVVELSNLQRQILHTEADVGQP 75 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEEcCcccccccccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceE
Q psy7300 522 KSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNS 601 (986)
Q Consensus 522 Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v 601 (986)
|+++++++++++||+++|+++...+..++ ..++++++|+||+|+|++++|.++++.|+++++|+|++|+.|..|++
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i~~~~----~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v 151 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERLDAEN----AEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQV 151 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEecceeCHHH----HHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 99999999999999999999998885422 15688999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccccCCC
Q psy7300 602 QVVVPHLTESYSSSQ 616 (986)
Q Consensus 602 ~~~~p~~t~cy~c~~ 616 (986)
.++.|+.++||.|..
T Consensus 152 ~~~~p~~~~c~~c~~ 166 (228)
T cd00757 152 TVFIPGEGPCYRCLF 166 (228)
T ss_pred EEECCCCCCCccccC
Confidence 999999999999954
No 19
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=3.9e-36 Score=344.70 Aligned_cols=181 Identities=25% Similarity=0.423 Sum_probs=166.0
Q ss_pred Cccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCC
Q psy7300 443 SRYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ 520 (986)
Q Consensus 443 ~rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 520 (986)
+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||.|||||||||+.+|||+
T Consensus 17 ~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-----g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~ 91 (390)
T PRK07411 17 ERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-----GRIGIVDFDVVDSSNLQRQVIHGTSWVGK 91 (390)
T ss_pred HHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEecccccCcCcccChHHCCC
Confidence 799999999 99999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 521 PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 521 ~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
+|+++|+++++++||.++|+++..++.+++ ..+++.++|+||+|+||+++|.++|++|+++++|+|.+++.|+.|+
T Consensus 92 ~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~----~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~ 167 (390)
T PRK07411 92 PKIESAKNRILEINPYCQVDLYETRLSSEN----ALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQ 167 (390)
T ss_pred cHHHHHHHHHHHHCCCCeEEEEecccCHHh----HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEE
Confidence 999999999999999999999999987543 2578999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCccccCCCC--CCCCCCCcccccCCC
Q psy7300 601 SQVVVPHLTESYSSSQD--PPEKSIPICTLKNFP 632 (986)
Q Consensus 601 v~~~~p~~t~cy~c~~~--~~~~~~p~Ctl~~~P 632 (986)
+.++.|+.++||+|... |+....|.|.-.+.-
T Consensus 168 ~~v~~~~~~~c~~c~~~~~~~~~~~~~c~~~gvl 201 (390)
T PRK07411 168 ATVFNYEGGPNYRDLYPEPPPPGMVPSCAEGGVL 201 (390)
T ss_pred EEEECCCCCCChHHhcCCCCCcccCCCCccCCcC
Confidence 99988888999999532 344556778744433
No 20
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=322.27 Aligned_cols=165 Identities=34% Similarity=0.475 Sum_probs=156.8
Q ss_pred CccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCC-c
Q psy7300 443 SRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ-P 521 (986)
Q Consensus 443 ~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~-~ 521 (986)
+||+||+++||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|.|.|+.|||+||++|+++|+|+ +
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-----GRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCccChhhhccccccChhhcCchH
Confidence 79999999999999999999999999999999999999999999 89999999999999999999999999999 6
Q ss_pred HHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceE
Q psy7300 522 KSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNS 601 (986)
Q Consensus 522 Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v 601 (986)
|+++++++++++||+++|+++...+.+++. +++++++|+|++|+||.++|.+++++|+++++|+|.+|+.|+.|++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~~----~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEENI----DEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHHH----HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 999999999999999999999988764331 4688999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccccCCC
Q psy7300 602 QVVVPHLTESYSSSQ 616 (986)
Q Consensus 602 ~~~~p~~t~cy~c~~ 616 (986)
.++.|+.|+||+|-.
T Consensus 159 ~~~~p~~~~c~~~~~ 173 (231)
T PRK08328 159 TTIVPGKTKRLREIF 173 (231)
T ss_pred EEECCCCCCCHHHhC
Confidence 999999999999853
No 21
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=8.6e-36 Score=338.14 Aligned_cols=182 Identities=28% Similarity=0.380 Sum_probs=167.4
Q ss_pred Cccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCC
Q psy7300 443 SRYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ 520 (986)
Q Consensus 443 ~rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 520 (986)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|+|+.|||+|||||+++|+|+
T Consensus 7 ~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 81 (355)
T PRK05597 7 ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVGQ 81 (355)
T ss_pred hHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCCC
Confidence 799999999 99999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 521 PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 521 ~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
+|+++++++++++||.++|+++..++.+++ ..++++++|+||+|+||+.+|.++|+.|+++++|+|.+++.|+.|+
T Consensus 82 ~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~----~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~ 157 (355)
T PRK05597 82 PKAESAREAMLALNPDVKVTVSVRRLTWSN----ALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQ 157 (355)
T ss_pred hHHHHHHHHHHHHCCCcEEEEEEeecCHHH----HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEE
Confidence 999999999999999999999999887533 1468899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCccccCC--CCCCCCCCCcccccCCCC
Q psy7300 601 SQVVVPHLTESYSSS--QDPPEKSIPICTLKNFPN 633 (986)
Q Consensus 601 v~~~~p~~t~cy~c~--~~~~~~~~p~Ctl~~~P~ 633 (986)
+.++.|+.++||+|. ..|++...|.|.-.....
T Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~gv~g 192 (355)
T PRK05597 158 LSVFHAGHGPIYEDLFPTPPPPGSVPSCSQAGVLG 192 (355)
T ss_pred EEEEcCCCCCCHHHhCCCCCCccCCCCccccCcch
Confidence 999989889999994 234445678887655443
No 22
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=4.7e-35 Score=314.52 Aligned_cols=166 Identities=27% Similarity=0.439 Sum_probs=154.6
Q ss_pred cCccchhhhcc--CHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCC
Q psy7300 442 GSRYEGQVAIF--GKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQ 519 (986)
Q Consensus 442 ~~rydrqi~~~--G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 519 (986)
..||+||+++| |.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~RQ~l~~~~diG 76 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDTVSLSNLQRQVLHSDANIG 76 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCcccccCcccceeeeHhhCC
Confidence 37999999995 6899999999999999999999999999999999 8999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcc
Q psy7300 520 QPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKG 599 (986)
Q Consensus 520 ~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G 599 (986)
++|+++++++++++||+++|+++...+.+++ ..+++.++|+||+|+||+++|.++|++|+++++|+|.+++.|+.|
T Consensus 77 ~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~----~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 77 QPKVESAKDALTQINPHIAINPINAKLDDAE----LAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEEeccCCHHH----HHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 9999999999999999999999998886432 257889999999999999999999999999999999999999999
Q ss_pred eEEEEe-CCCCccccCCC
Q psy7300 600 NSQVVV-PHLTESYSSSQ 616 (986)
Q Consensus 600 ~v~~~~-p~~t~cy~c~~ 616 (986)
++.++. +..++||+|..
T Consensus 153 ~v~~~~~~~~~~c~~C~~ 170 (240)
T TIGR02355 153 QVSVFTYQDGEPCYRCLS 170 (240)
T ss_pred EEEEEecCCCCCcccccc
Confidence 998775 45689999964
No 23
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=9.8e-35 Score=303.40 Aligned_cols=152 Identities=19% Similarity=0.406 Sum_probs=145.1
Q ss_pred CccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcH
Q psy7300 443 SRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPK 522 (986)
Q Consensus 443 ~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K 522 (986)
.|||||+++||.++|++|++++|+|+|+||+|||++|+|+++|| |+|+|+|+|.|+.+||+|||||+.+|+|++|
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ve~snL~rqfl~~~~diG~~K 76 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCcccHhhCCCCccccHHHcCchH
Confidence 59999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEE
Q psy7300 523 SATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQ 602 (986)
Q Consensus 523 a~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~ 602 (986)
+++++++++++||+++|+++...+.+. +.+||+++|+||+|+|+.++|.++|+.|+++++|+|.+|+.|+.|++.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~~~-----~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDISEK-----PEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVF 151 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccc-----HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEE
Confidence 999999999999999999999887521 367899999999999999999999999999999999999999999986
Q ss_pred EE
Q psy7300 603 VV 604 (986)
Q Consensus 603 ~~ 604 (986)
+.
T Consensus 152 ~d 153 (197)
T cd01492 152 AD 153 (197)
T ss_pred Ee
Confidence 53
No 24
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=9.9e-35 Score=330.03 Aligned_cols=179 Identities=27% Similarity=0.462 Sum_probs=163.3
Q ss_pred Cccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCC
Q psy7300 443 SRYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ 520 (986)
Q Consensus 443 ~rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 520 (986)
+||+||+++ ||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+.+|||+
T Consensus 20 ~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gv-----g~i~ivD~D~ve~sNL~RQ~l~~~~diG~ 94 (370)
T PRK05600 20 RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGV-----GTITLIDDDTVDVSNIHRQILFGASDVGR 94 (370)
T ss_pred HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEeCCEEccccccccccCChhHCCC
Confidence 799999999 99999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 521 PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 521 ~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
+|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||+++|.++|+.|+++++|+|.+++.|+.|+
T Consensus 95 ~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~ 170 (370)
T PRK05600 95 PKVEVAAERLKEIQPDIRVNALRERLTAENA----VELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGE 170 (370)
T ss_pred HHHHHHHHHHHHHCCCCeeEEeeeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEE
Confidence 9999999999999999999999999875332 468899999999999999999999999999999999999999999
Q ss_pred EEEEeCCC---CccccCCC-C-CCCCCCCcccccC
Q psy7300 601 SQVVVPHL---TESYSSSQ-D-PPEKSIPICTLKN 630 (986)
Q Consensus 601 v~~~~p~~---t~cy~c~~-~-~~~~~~p~Ctl~~ 630 (986)
+.++.|.. ++||+|.. . ++....|.|....
T Consensus 171 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~g 205 (370)
T PRK05600 171 LAVFNSGPDHRGVGLRDLFPEQPSGDSIPDCATAG 205 (370)
T ss_pred EEEEecCCCCCCCCcHhhCCCCCccccCCCCccCC
Confidence 99988753 68999953 2 3334567785443
No 25
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=9.2e-35 Score=334.15 Aligned_cols=185 Identities=28% Similarity=0.480 Sum_probs=165.6
Q ss_pred ccccccccccCccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccc
Q psy7300 433 IAETDAIVNGSRYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQ 510 (986)
Q Consensus 433 ~~~~~~~~~~~rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRq 510 (986)
+++++. +||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||.|||+||
T Consensus 15 l~~~~~----~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq 85 (392)
T PRK07878 15 LTRDEV----ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDVVDESNLQRQ 85 (392)
T ss_pred CCHHHH----HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecCcccccc
Confidence 455554 799999998 99999999999999999999999999999999999 8999999999999999999
Q ss_pred cCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy7300 511 FLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLL 590 (986)
Q Consensus 511 flf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli 590 (986)
|||+.+|||++|+++++++++++||.++|+++..++..++ ..++++++|+||+|+||+.+|.++|++|+.+++|+|
T Consensus 86 ~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~----~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v 161 (392)
T PRK07878 86 VIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSN----AVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYV 161 (392)
T ss_pred cccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCChhH----HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999999999887532 257889999999999999999999999999999999
Q ss_pred EEeecCCcceEEEEeC----CCCccccCCC--CCCCCCCCcccccC
Q psy7300 591 ESGTLGTKGNSQVVVP----HLTESYSSSQ--DPPEKSIPICTLKN 630 (986)
Q Consensus 591 ~~g~~G~~G~v~~~~p----~~t~cy~c~~--~~~~~~~p~Ctl~~ 630 (986)
.+++.|+.|++.++.+ +.++||+|.. .++...+|.|.-.+
T Consensus 162 ~~~~~g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g 207 (392)
T PRK07878 162 WGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAEGG 207 (392)
T ss_pred EEEeccCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCCccCC
Confidence 9999999999998874 3689999953 23334567775433
No 26
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=1.1e-34 Score=316.29 Aligned_cols=181 Identities=19% Similarity=0.290 Sum_probs=165.1
Q ss_pred ccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHH
Q psy7300 444 RYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKS 523 (986)
Q Consensus 444 rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka 523 (986)
.|+||+++||.++|+||++++|+|+|+||+|||+||||+++|| |+|+|+|+|.|+.+||+|||+|+++|||++|+
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-----g~itI~D~d~ve~snL~rqf~~~~~dIGk~Ka 75 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-----KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRA 75 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-----CeEEEEcCCccchhhcccCccCChHHhCHHHH
Confidence 4999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEEE
Q psy7300 524 ATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQV 603 (986)
Q Consensus 524 ~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~~ 603 (986)
++++++|+++||.++|+++...+ +.+++.++|+||+|.|+.++|.++|++|+++++|+|.+++.|+.|++.+
T Consensus 76 ea~~~~L~eLNp~V~V~~~~~~~--------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 76 EASQARLAELNPYVPVTVSTGPL--------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC 147 (286)
T ss_pred HHHHHHHHHHCCCCEEEEEeccC--------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe
Confidence 99999999999999999998763 2568899999999999999999999999999999999999999999977
Q ss_pred EeCCCCccccCC-C-CCCCCCCCcccccCCCCcchhhHH
Q psy7300 604 VVPHLTESYSSS-Q-DPPEKSIPICTLKNFPNAIEHTLQ 640 (986)
Q Consensus 604 ~~p~~t~cy~c~-~-~~~~~~~p~Ctl~~~P~~~~h~i~ 640 (986)
-. .+||.|. . .+++.+.+.|++.+-+..+.||+.
T Consensus 148 df---g~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~ 183 (286)
T cd01491 148 DF---GDEFTVYDPNGEEPKSGMISSISKDNPGVVTCLD 183 (286)
T ss_pred cC---CCeEEEeCCCCCcCCccceeeeecCCceEEEEEC
Confidence 43 3666663 1 134577889999888888889976
No 27
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=4.8e-34 Score=298.63 Aligned_cols=154 Identities=22% Similarity=0.421 Sum_probs=144.3
Q ss_pred ccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCC--CCCCCc
Q psy7300 444 RYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRP--HDVQQP 521 (986)
Q Consensus 444 rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~--~diG~~ 521 (986)
|||||+++||.++|++|++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||||++ .|+|++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~ 75 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN 75 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCcCChhcCcccEecccchhhcCch
Confidence 7999999999999999999999999999999999999999999 899999999999999999999998 899999
Q ss_pred HHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceE
Q psy7300 522 KSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNS 601 (986)
Q Consensus 522 Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v 601 (986)
|+++++++++++||+++|+++...+.+..+ ..++||+++|+||+|.|+.++|.++|++|+++++|+|.+++.|+.|++
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~--~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 153 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDS--NIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYA 153 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchh--hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEE
Confidence 999999999999999999999887752111 236889999999999999999999999999999999999999999998
Q ss_pred EEE
Q psy7300 602 QVV 604 (986)
Q Consensus 602 ~~~ 604 (986)
.+.
T Consensus 154 ~~~ 156 (198)
T cd01485 154 FFD 156 (198)
T ss_pred EEc
Confidence 654
No 28
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=1e-33 Score=318.39 Aligned_cols=166 Identities=27% Similarity=0.440 Sum_probs=156.4
Q ss_pred Cccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCC-
Q psy7300 443 SRYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQ- 519 (986)
Q Consensus 443 ~rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG- 519 (986)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|+|
T Consensus 3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~ 77 (338)
T PRK12475 3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAKQ 77 (338)
T ss_pred chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHccC
Confidence 699999988 89999999999999999999999999999999999 8999999999999999999999999985
Q ss_pred -CcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy7300 520 -QPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTK 598 (986)
Q Consensus 520 -~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~ 598 (986)
++|+++|+++++++||+++|+++...+.+++. .++++++|+||+|+||+++|..+|++|+++++|+|.+++.|..
T Consensus 78 g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~----~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~ 153 (338)
T PRK12475 78 KKPKAIAAKEHLRKINSEVEIVPVVTDVTVEEL----EELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSY 153 (338)
T ss_pred CccHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccE
Confidence 89999999999999999999999888764321 4678999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCCCccccCCCC
Q psy7300 599 GNSQVVVPHLTESYSSSQD 617 (986)
Q Consensus 599 G~v~~~~p~~t~cy~c~~~ 617 (986)
|++.++.|+.|+||+|...
T Consensus 154 G~~~~~~P~~tpC~~Cl~~ 172 (338)
T PRK12475 154 GVTYTIIPGKTPCLRCLME 172 (338)
T ss_pred EEEEEECCCCCCCHHHhcC
Confidence 9999999999999999643
No 29
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=1.6e-33 Score=316.85 Aligned_cols=166 Identities=28% Similarity=0.412 Sum_probs=156.3
Q ss_pred cCccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCC
Q psy7300 442 GSRYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQ 519 (986)
Q Consensus 442 ~~rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 519 (986)
++||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|+|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig 76 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVK 76 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhc
Confidence 3799999988 99999999999999999999999999999999999 8999999999999999999999999995
Q ss_pred --CcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q psy7300 520 --QPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGT 597 (986)
Q Consensus 520 --~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~ 597 (986)
++|+++++++++++||.++|+++..++.+.+. .++++++|+||+|+||+++|.++|++|+++++|+|.+++.|.
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~----~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~ 152 (339)
T PRK07688 77 NNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL----EELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGS 152 (339)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeee
Confidence 59999999999999999999999988864332 467899999999999999999999999999999999999999
Q ss_pred cceEEEEeCCCCccccCCC
Q psy7300 598 KGNSQVVVPHLTESYSSSQ 616 (986)
Q Consensus 598 ~G~v~~~~p~~t~cy~c~~ 616 (986)
.|++.++.|+.++||+|..
T Consensus 153 ~G~~~~~~p~~~pC~~Cl~ 171 (339)
T PRK07688 153 YGLSYTIIPGKTPCLRCLL 171 (339)
T ss_pred eeEEEEECCCCCCCeEeec
Confidence 9999999999999999953
No 30
>KOG2017|consensus
Probab=100.00 E-value=5.5e-34 Score=303.27 Aligned_cols=191 Identities=26% Similarity=0.411 Sum_probs=173.6
Q ss_pred cccccccccccCccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCcc
Q psy7300 432 NIAETDAIVNGSRYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNR 509 (986)
Q Consensus 432 ~~~~~~~~~~~~rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnR 509 (986)
.++.+++ .||+||+.+ ||..+|.+|++++|+||||||+||.++.+|+.+|+ |+|-|||.|.||.|||.|
T Consensus 38 ~Ls~dei----~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGv-----G~lGiVD~DvVe~sNlhR 108 (427)
T KOG2017|consen 38 GLSLDEI----LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGV-----GRLGIVDYDVVELSNLHR 108 (427)
T ss_pred CCCHHHH----HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCC-----CeecccccceeehhhHHH
Confidence 5677776 799999988 99999999999999999999999999999999999 899999999999999999
Q ss_pred ccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy7300 510 QFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPL 589 (986)
Q Consensus 510 qflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pl 589 (986)
|.++++..+|++|++.|++.++++||+++|..|...+.+++. .+.+++||+|+||+||+.+|..+++.|+..|+|+
T Consensus 109 QVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa----~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpL 184 (427)
T KOG2017|consen 109 QVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNA----FDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPL 184 (427)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhH----HHHhhccceEEEcCCCccchhhhhhHHHHcCCcc
Confidence 999999999999999999999999999999999999987664 4789999999999999999999999999999999
Q ss_pred EEEeecCCcceEEEEeCCCCccccC--CCCCCCCCCCcccccCCCCcc
Q psy7300 590 LESGTLGTKGNSQVVVPHLTESYSS--SQDPPEKSIPICTLKNFPNAI 635 (986)
Q Consensus 590 i~~g~~G~~G~v~~~~p~~t~cy~c--~~~~~~~~~p~Ctl~~~P~~~ 635 (986)
|.+...++.||..+.--...+||+| +..|++.....|.-.+.-..+
T Consensus 185 VSgSaLr~EGQLtvYny~~GPCYRClFP~Ppp~~~vt~C~dgGVlGpv 232 (427)
T KOG2017|consen 185 VSGSALRWEGQLTVYNYNNGPCYRCLFPNPPPPEAVTNCADGGVLGPV 232 (427)
T ss_pred cccccccccceeEEeecCCCceeeecCCCCcChHHhcccccCceeecc
Confidence 9999999999999886677899999 344555667778755554443
No 31
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.98 E-value=3.7e-32 Score=296.07 Aligned_cols=166 Identities=35% Similarity=0.577 Sum_probs=156.6
Q ss_pred Cccchhhhcc--CHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCC
Q psy7300 443 SRYEGQVAIF--GKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ 520 (986)
Q Consensus 443 ~rydrqi~~~--G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 520 (986)
.||+||+.++ |.++|++|+.+||+|||+||+||+++++|+++|+ |+++|+|.|+|+.|||+||++|+..|+|+
T Consensus 9 ~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGv-----g~l~i~D~d~v~~snL~rq~~~~~~dig~ 83 (254)
T COG0476 9 ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGV-----GKLTIVDFDTVELSNLQRQFLFTEADVGK 83 (254)
T ss_pred HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCC-----CeEEEEcCCcccccccCceeeecccccCC
Confidence 7999999995 5555999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 521 PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 521 ~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
+|+++|++.++++||.+.++++...++..+. ..++.++|+|++|+||+++|..+|+.|+.+++|++++|+.|+.|+
T Consensus 84 ~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~----~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~ 159 (254)
T COG0476 84 PKAEVAAKALRKLNPLVEVVAYLERLDEENA----EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQ 159 (254)
T ss_pred cHHHHHHHHHHHhCCCCeEEEeecccChhhH----HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEE
Confidence 9999999999999999999999999876443 588999999999999999999999999999999999999999999
Q ss_pred EEEEeCC-CCccccCCCC
Q psy7300 601 SQVVVPH-LTESYSSSQD 617 (986)
Q Consensus 601 v~~~~p~-~t~cy~c~~~ 617 (986)
+.++.|. .++||+|..+
T Consensus 160 ~~~~~~~~~~~c~~~~~~ 177 (254)
T COG0476 160 VTVIIPGDKTPCYRCLFP 177 (254)
T ss_pred EEEEecCCCCCcccccCC
Confidence 9999999 5999999543
No 32
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.98 E-value=3.9e-32 Score=311.63 Aligned_cols=182 Identities=26% Similarity=0.476 Sum_probs=164.6
Q ss_pred Cccchhhhc--cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCC
Q psy7300 443 SRYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ 520 (986)
Q Consensus 443 ~rydrqi~~--~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 520 (986)
.||+||+.+ ||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEecchhhccccccchhhCCC
Confidence 699999998 99999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 521 PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 521 ~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
+|+++++++++++||.++|+++...+.+.+. .++++++|+||+|+||+++|.++|++|+++++|+|.+++.|+.|+
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNV----EALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999888764321 467899999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----CccccCCC--CCCCCCCCcccccCCCC
Q psy7300 601 SQVVVPHL----TESYSSSQ--DPPEKSIPICTLKNFPN 633 (986)
Q Consensus 601 v~~~~p~~----t~cy~c~~--~~~~~~~p~Ctl~~~P~ 633 (986)
+.++.|+. ++||+|.. ++.....|.|...+...
T Consensus 265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g 303 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAEAGVLG 303 (376)
T ss_pred EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCccCCcch
Confidence 99999876 89999953 23334457786654443
No 33
>PRK08223 hypothetical protein; Validated
Probab=99.98 E-value=4.2e-32 Score=294.23 Aligned_cols=161 Identities=21% Similarity=0.270 Sum_probs=149.4
Q ss_pred hhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHH
Q psy7300 55 EGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVS 134 (986)
Q Consensus 55 ~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~ 134 (986)
+++|+||+.++|.++|+||++++|+|+||||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++.+|||++||+++
T Consensus 7 ~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a 86 (287)
T PRK08223 7 DEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVL 86 (287)
T ss_pred HHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCH--HHHHHHHHHHHHcCCcEEEeecccceEEEEeec--C
Q psy7300 135 HTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTY--DEQLAISQITHANDIALIIADTRGLFAQVFCDF--G 206 (986)
Q Consensus 135 ~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~--~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~--g 206 (986)
+++|+++||+++|+++...+++ ++++++|+||+|.|++ +++..+|+.|++++||||++++.|+.|++.+-. +
T Consensus 87 ~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~~ 166 (287)
T PRK08223 87 AEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPGG 166 (287)
T ss_pred HHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCCC
Confidence 9999999999999999887753 6789999999999985 899999999999999999999999999975543 4
Q ss_pred CceEEEcCC
Q psy7300 207 NNFTVVDTT 215 (986)
Q Consensus 207 ~~f~v~~~~ 215 (986)
.+|.++.+.
T Consensus 167 p~~~~~f~~ 175 (287)
T PRK08223 167 MSFDDYFDL 175 (287)
T ss_pred CchhhhcCC
Confidence 566666544
No 34
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.98 E-value=4.9e-32 Score=284.59 Aligned_cols=157 Identities=28% Similarity=0.416 Sum_probs=146.5
Q ss_pred ccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHH
Q psy7300 57 LYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVS 134 (986)
Q Consensus 57 ~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~ 134 (986)
|||||+++ ||.++|+||++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++||+|||+++++|+|++||+++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeec----C
Q psy7300 135 HTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDF----G 206 (986)
Q Consensus 135 ~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~----g 206 (986)
+++|+++||+++++.+...+++ ++++++|+||+|.|+.+.+..++++|+++++|||.+++.|++|++++-. +
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~ 160 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEG 160 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCC
Confidence 9999999999999999887754 4688999999999999999999999999999999999999999987643 2
Q ss_pred CceEEEc
Q psy7300 207 NNFTVVD 213 (986)
Q Consensus 207 ~~f~v~~ 213 (986)
.||.|..
T Consensus 161 ~c~~c~~ 167 (202)
T TIGR02356 161 PCLRCLF 167 (202)
T ss_pred CChhhcC
Confidence 3555554
No 35
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.97 E-value=1.2e-31 Score=289.32 Aligned_cols=150 Identities=23% Similarity=0.382 Sum_probs=143.3
Q ss_pred hhccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHH
Q psy7300 55 EGLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAE 132 (986)
Q Consensus 55 ~~~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~ 132 (986)
.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|||++||+
T Consensus 10 ~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~ 89 (245)
T PRK05690 10 MLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVE 89 (245)
T ss_pred HHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHH
Confidence 4799999988 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEee
Q psy7300 133 VSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCD 204 (986)
Q Consensus 133 a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d 204 (986)
+++++|+++||+++|+++...+++ +++++||+||+|+|+.+.+..++++|+++++|||++++.|+.|++.+-
T Consensus 90 ~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~ 165 (245)
T PRK05690 90 SARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVF 165 (245)
T ss_pred HHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEE
Confidence 999999999999999999888754 468899999999999999999999999999999999999999998653
No 36
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.97 E-value=1.9e-31 Score=306.70 Aligned_cols=160 Identities=20% Similarity=0.361 Sum_probs=151.0
Q ss_pred hhccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHH
Q psy7300 55 EGLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAE 132 (986)
Q Consensus 55 ~~~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~ 132 (986)
.+||+||+++ ||.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||++||+
T Consensus 20 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~ 99 (392)
T PRK07878 20 VARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQ 99 (392)
T ss_pred HHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHH
Confidence 4899999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEe---e-
Q psy7300 133 VSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFC---D- 204 (986)
Q Consensus 133 a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~---d- 204 (986)
+++++|+++||+|+|+++...++. +++++||+||+|+|+...+..+|++|+++++|||++++.|++|++++ |
T Consensus 100 ~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~~~~ 179 (392)
T PRK07878 100 SARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWEDA 179 (392)
T ss_pred HHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEecCC
Confidence 999999999999999999887754 57899999999999999999999999999999999999999999873 3
Q ss_pred ---cCCceEEEcC
Q psy7300 205 ---FGNNFTVVDT 214 (986)
Q Consensus 205 ---~g~~f~v~~~ 214 (986)
++.||.|+.+
T Consensus 180 ~~~~~~c~~c~~~ 192 (392)
T PRK07878 180 PDGLGLNYRDLYP 192 (392)
T ss_pred CCCCCCeeeeecC
Confidence 4668888874
No 37
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.97 E-value=1.8e-31 Score=285.84 Aligned_cols=149 Identities=28% Similarity=0.442 Sum_probs=142.3
Q ss_pred ccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHH
Q psy7300 57 LYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVS 134 (986)
Q Consensus 57 ~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~ 134 (986)
|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||||++++|+|++||+++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeec
Q psy7300 135 HTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDF 205 (986)
Q Consensus 135 ~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~ 205 (986)
+++|+++||+++|+.+...++. ++++++|+||+|.|+.+.+..++++|+++++|+|++++.|+.|++..-.
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~ 155 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFI 155 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEC
Confidence 9999999999999999887743 4778999999999999999999999999999999999999999986543
No 38
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.97 E-value=2.4e-31 Score=305.46 Aligned_cols=168 Identities=19% Similarity=0.308 Sum_probs=153.9
Q ss_pred CccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcH
Q psy7300 443 SRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPK 522 (986)
Q Consensus 443 ~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K 522 (986)
.|||||+++||.++|++|++++|+||||||+|||++|||+++|| |+|||+|+|.|+.+||+|||+++.+|||++|
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GI-----g~~tIvD~~~V~~sDL~~nFfl~~~diGk~k 75 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSKVDEEDLGNNFFLDASSLGKSR 75 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCC-----CeEEEECCCcCchhhccccccCChhhcCcHH
Confidence 49999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEE
Q psy7300 523 SATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQ 602 (986)
Q Consensus 523 a~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~ 602 (986)
|+++++.|+++||+++++++...+.... ..+.+||.++|+||.+.++...+..++++|+.+++|+|.+++.|+.|++.
T Consensus 76 A~~~~~~L~eLNp~V~i~~~~e~~~~ll--~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~ 153 (425)
T cd01493 76 AEATCELLQELNPDVNGSAVEESPEALL--DNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIR 153 (425)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccchhh--hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEE
Confidence 9999999999999999999987764311 12468999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccCCCCC
Q psy7300 603 VVVPHLTESYSSSQDP 618 (986)
Q Consensus 603 ~~~p~~t~cy~c~~~~ 618 (986)
+.+|. ..+..+.+++
T Consensus 154 v~~~~-h~i~et~p~~ 168 (425)
T cd01493 154 IQLKE-HTIVESHPDN 168 (425)
T ss_pred EEECC-eEEEECCCCC
Confidence 99995 3466665443
No 39
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=2.7e-31 Score=293.16 Aligned_cols=167 Identities=25% Similarity=0.455 Sum_probs=153.3
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCCC-
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELS- 155 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~~- 155 (986)
+|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||+|+|+++...++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ----HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecCCceEEEc-CCCCCCceeEEeceecc
Q psy7300 156 ----EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVD-TTGENPVSVIIAGVTRE 230 (986)
Q Consensus 156 ----~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~~-~~~e~p~~~~i~~i~~~ 230 (986)
.+++++||+||+|.|+.+.+..+|++|+.+++|||.+++.|++|+++++++..+.|++ ..++.|.+..+..|++.
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~~~ 160 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRST 160 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceecCC
Confidence 3789999999999999999999999999999999999999999999999998887887 56677778888888877
Q ss_pred cCccccccccccc
Q psy7300 231 AEGVVTCLDETRH 243 (986)
Q Consensus 231 ~~~~v~~~~~~~h 243 (986)
..+.+++.+..++
T Consensus 161 p~~~~hci~~a~~ 173 (312)
T cd01489 161 PSQPIHCIVWAKS 173 (312)
T ss_pred CCCCEeehhHHHH
Confidence 7777777665443
No 40
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=1.7e-31 Score=303.16 Aligned_cols=164 Identities=24% Similarity=0.310 Sum_probs=152.0
Q ss_pred hhhhhccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCch
Q psy7300 52 DIDEGLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRN 129 (986)
Q Consensus 52 ~i~~~~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~ 129 (986)
.++.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++
T Consensus 3 ~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 82 (355)
T PRK05597 3 NLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQP 82 (355)
T ss_pred hHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCCh
Confidence 3567899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeec
Q psy7300 130 RAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDF 205 (986)
Q Consensus 130 Ka~a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~ 205 (986)
||++++++|+++||+|+|+++...++. ++++++|+||+|+|+...+..+|++|+++++|||++++.|+.|++++-.
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~ 162 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFH 162 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEc
Confidence 999999999999999999999887753 5789999999999999999999999999999999999999999988643
Q ss_pred ---CCceEEEcCC
Q psy7300 206 ---GNNFTVVDTT 215 (986)
Q Consensus 206 ---g~~f~v~~~~ 215 (986)
+.+|.|+.+.
T Consensus 163 ~~~~~~~~~~~~~ 175 (355)
T PRK05597 163 AGHGPIYEDLFPT 175 (355)
T ss_pred CCCCCCHHHhCCC
Confidence 2366666543
No 41
>PRK07411 hypothetical protein; Validated
Probab=99.97 E-value=3e-31 Score=304.45 Aligned_cols=162 Identities=20% Similarity=0.323 Sum_probs=151.9
Q ss_pred hhhccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHH
Q psy7300 54 DEGLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRA 131 (986)
Q Consensus 54 ~~~~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka 131 (986)
+.+||+||+++ ||.++|+||++++|+|+||||||+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||++||
T Consensus 15 ~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka 94 (390)
T PRK07411 15 EYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKI 94 (390)
T ss_pred HHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHH
Confidence 35799999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeec--
Q psy7300 132 EVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDF-- 205 (986)
Q Consensus 132 ~a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~-- 205 (986)
++++++|+++||+|+|+++...+++ +++.++|+||+|+|+.+++..||++|++.++|+|++++.|++|++.+-.
T Consensus 95 ~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~ 174 (390)
T PRK07411 95 ESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYE 174 (390)
T ss_pred HHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCC
Confidence 9999999999999999999988754 5789999999999999999999999999999999999999999986543
Q ss_pred -CCceEEEcCC
Q psy7300 206 -GNNFTVVDTT 215 (986)
Q Consensus 206 -g~~f~v~~~~ 215 (986)
+.||.|+.+.
T Consensus 175 ~~~c~~c~~~~ 185 (390)
T PRK07411 175 GGPNYRDLYPE 185 (390)
T ss_pred CCCChHHhcCC
Confidence 3488888754
No 42
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=2.6e-31 Score=320.41 Aligned_cols=165 Identities=24% Similarity=0.379 Sum_probs=155.6
Q ss_pred cCccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCc
Q psy7300 442 GSRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQP 521 (986)
Q Consensus 442 ~~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~ 521 (986)
.+||+||+.+||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|+||.||||||++|+.+|||++
T Consensus 23 ~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV-----G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~ 97 (679)
T PRK14851 23 EAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGI-----GRFHIADFDQFEPVNVNRQFGARVPSFGRP 97 (679)
T ss_pred HHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCC-----CeEEEEcCCEecccccccCcCcChhhCCCH
Confidence 389999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCC--HHHHHHHHHHHHHcCCcEEEEeecCCcc
Q psy7300 522 KSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDN--VEARIYMDRRCVYSRKPLLESGTLGTKG 599 (986)
Q Consensus 522 Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn--~~ar~~l~~~c~~~~~pli~~g~~G~~G 599 (986)
|+++++++++++||.++|+++...+++++. ++|++++|+||+|+|| .++|+++++.|+++++|+|.+|+.|+.|
T Consensus 98 Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~----~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g 173 (679)
T PRK14851 98 KLAVMKEQALSINPFLEITPFPAGINADNM----DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSS 173 (679)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCChHHH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccc
Confidence 999999999999999999999999975432 5789999999999997 5789999999999999999999999999
Q ss_pred eEEEEeCCCCccccCCC
Q psy7300 600 NSQVVVPHLTESYSSSQ 616 (986)
Q Consensus 600 ~v~~~~p~~t~cy~c~~ 616 (986)
++.++.|+ +.||.|-.
T Consensus 174 ~~~~~~p~-~~~~~~~~ 189 (679)
T PRK14851 174 AMLVFTPQ-GMGFDDYF 189 (679)
T ss_pred eEEEEcCC-CCCHhHhc
Confidence 99999987 68887743
No 43
>PRK14852 hypothetical protein; Provisional
Probab=99.97 E-value=3.6e-31 Score=321.90 Aligned_cols=165 Identities=22% Similarity=0.307 Sum_probs=155.4
Q ss_pred ccCccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCC
Q psy7300 441 NGSRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ 520 (986)
Q Consensus 441 ~~~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 520 (986)
...||+||+.+||.++|++|++++|+||||||+||+++++||++|| |+|+|+|.|+|+.||||||++|+.+|||+
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGV-----G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~ 385 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGI-----GNFNLADFDAYSPVNLNRQYGASIASFGR 385 (989)
T ss_pred HHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEecccccccccCCChhhCCC
Confidence 4479999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCC--HHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy7300 521 PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDN--VEARIYMDRRCVYSRKPLLESGTLGTK 598 (986)
Q Consensus 521 ~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn--~~ar~~l~~~c~~~~~pli~~g~~G~~ 598 (986)
+|+++++++++++||.++|+++...+.+++. ++|++++|+||+|+|+ .++|++++..|+++++|+|.+|+.|+.
T Consensus 386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~----~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 386 GKLDVMTERALSVNPFLDIRSFPEGVAAETI----DAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCHHHH----HHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 9999999999999999999999999976543 6789999999999998 467889999999999999999999999
Q ss_pred ceEEEEeCCCCccccCC
Q psy7300 599 GNSQVVVPHLTESYSSS 615 (986)
Q Consensus 599 G~v~~~~p~~t~cy~c~ 615 (986)
|++.++.|+. .||.|-
T Consensus 462 g~v~v~~p~~-~~~~~~ 477 (989)
T PRK14852 462 CALLVFMPGG-MNFDSY 477 (989)
T ss_pred eeEEEEcCCC-CCHHHh
Confidence 9999998874 899884
No 44
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.97 E-value=1e-30 Score=280.99 Aligned_cols=148 Identities=27% Similarity=0.417 Sum_probs=141.0
Q ss_pred hhccccchhcc--cHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHH
Q psy7300 55 EGLYSRQLYVL--GHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAE 132 (986)
Q Consensus 55 ~~~y~Rqi~l~--G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~ 132 (986)
.+||+||+++| |.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||++++++|+|++||+
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 36999999997 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEE
Q psy7300 133 VSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVF 202 (986)
Q Consensus 133 a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf 202 (986)
+++++|+++||+++|+.+...+++ ++++++|+||+|.|+.+.+..+|++|+++++|||++++.|+.|++.
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~ 155 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVS 155 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEE
Confidence 999999999999999999887764 4788999999999999999999999999999999999999999874
No 45
>PRK08328 hypothetical protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=277.58 Aligned_cols=151 Identities=25% Similarity=0.441 Sum_probs=143.2
Q ss_pred hhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCc-hHHHH
Q psy7300 55 EGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGR-NRAEV 133 (986)
Q Consensus 55 ~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk-~Ka~a 133 (986)
.+||+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|+ +|+++
T Consensus 7 ~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~ 86 (231)
T PRK08328 7 LERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLS 86 (231)
T ss_pred HHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999 59999
Q ss_pred HHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeec
Q psy7300 134 SHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDF 205 (986)
Q Consensus 134 ~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~ 205 (986)
++++|+++||+++|+.+...+++ ++++++|+||+|.|+.+.+..++++|+++++|+|++++.|++|+++.-.
T Consensus 87 a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~ 162 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIV 162 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEEC
Confidence 99999999999999998877754 4788999999999999999999999999999999999999999987543
No 46
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=1.3e-30 Score=277.98 Aligned_cols=162 Identities=29% Similarity=0.452 Sum_probs=143.1
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCc---CC-CC-eEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhC
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGA---GP-GG-QIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMN 534 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~---g~-~g-~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~n 534 (986)
-+..+|+||||||+||+++++||++|+++ |. .| +|+|+|+|+|+.|||||| +|+..|||++||++++++++.++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 37889999999999999999999998643 31 13 999999999999999999 58899999999999999999988
Q ss_pred CCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHH--c-CCcEEEEee--------cCC-----c
Q psy7300 535 PNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVY--S-RKPLLESGT--------LGT-----K 598 (986)
Q Consensus 535 p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~--~-~~pli~~g~--------~G~-----~ 598 (986)
+++|+++..++.+. .++.++|+||+|+||+++|.++++.|++ + .+|++++|+ .|. +
T Consensus 88 -~~~i~a~~~~~~~~-------~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k 159 (244)
T TIGR03736 88 -GTDWTAHPERVERS-------STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAK 159 (244)
T ss_pred -CceEEEEEeeeCch-------hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccc
Confidence 89999999988751 3356899999999999999999999998 3 489999998 566 7
Q ss_pred ceEEEEeCCCCccccCCCCC---CCCCCCcccccC
Q psy7300 599 GNSQVVVPHLTESYSSSQDP---PEKSIPICTLKN 630 (986)
Q Consensus 599 G~v~~~~p~~t~cy~c~~~~---~~~~~p~Ctl~~ 630 (986)
|+.++++|+.|+||.|..+| ++.+.|+||+..
T Consensus 160 ~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~ 194 (244)
T TIGR03736 160 GENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAE 194 (244)
T ss_pred cCCceecCCchhhCcccccCccCCCCCCCCchHHH
Confidence 88899999999999998887 778999998743
No 47
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=3.3e-29 Score=273.65 Aligned_cols=131 Identities=27% Similarity=0.448 Sum_probs=122.3
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC--
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL-- 154 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~-- 154 (986)
||||+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||+++|+++...+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred -CHhhhccccEEEEecCCHHHHHHHHHHHHHc--------CCcEEEeecccceEEEEeecCC
Q psy7300 155 -SEAFIKKFRVVVLTNSTYDEQLAISQITHAN--------DIALIIADTRGLFAQVFCDFGN 207 (986)
Q Consensus 155 -~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~--------~ip~I~~~~~G~~G~vf~d~g~ 207 (986)
+.+|+++||+||+|.|+.+.|..+|+.|.+. ++|+|.+++.|+.|++++..+.
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~ 142 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPG 142 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCC
Confidence 3579999999999999999999999987553 5999999999999999876643
No 48
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.97 E-value=3.4e-30 Score=292.99 Aligned_cols=150 Identities=21% Similarity=0.404 Sum_probs=144.2
Q ss_pred hhhccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHH
Q psy7300 54 DEGLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRA 131 (986)
Q Consensus 54 ~~~~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka 131 (986)
+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+|||+++++|+|++||
T Consensus 18 e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka 97 (370)
T PRK05600 18 ELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKV 97 (370)
T ss_pred HHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHH
Confidence 34799999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEe
Q psy7300 132 EVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFC 203 (986)
Q Consensus 132 ~a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~ 203 (986)
++++++|+++||+++|+++...+++ ++++++|+||+|+|+.+++..+|++|+++++|+|++++.|+.|++.+
T Consensus 98 ~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v 173 (370)
T PRK05600 98 EVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAV 173 (370)
T ss_pred HHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEE
Confidence 9999999999999999999888864 57889999999999999999999999999999999999999999864
No 49
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.96 E-value=1.3e-29 Score=274.03 Aligned_cols=183 Identities=18% Similarity=0.309 Sum_probs=158.5
Q ss_pred hhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHH
Q psy7300 55 EGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVS 134 (986)
Q Consensus 55 ~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~ 134 (986)
.++|+||.+|||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+|++||+++..+|+|++||+++
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCEEEeecCCCCH----hhh-ccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecCCce
Q psy7300 135 HTNLSQLNPYVSTKAYTGELSE----AFI-KKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNNF 209 (986)
Q Consensus 135 ~~~L~~lNp~V~v~~~~~~~~~----~~l-~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g~~f 209 (986)
+++++++||+++|+.+...+++ +++ .+||+||+|.|+...+..|+++|+++++|||+++..|
T Consensus 90 ~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag------------- 156 (268)
T PRK15116 90 AERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG------------- 156 (268)
T ss_pred HHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc-------------
Confidence 9999999999999998776653 344 4799999999999999999999999999999997666
Q ss_pred EEEcCCCCCCceeEEeceecccCcccccc---cccc-cCCC------CCceEEEEe
Q psy7300 210 TVVDTTGENPVSVIIAGVTREAEGVVTCL---DETR-HGFE------DGDYVTFSE 255 (986)
Q Consensus 210 ~v~~~~~e~p~~~~i~~i~~~~~~~v~~~---~~~~-h~~~------~gd~v~f~e 255 (986)
..-+|....+.+|+++....+... ..++ |++. .|..|+||.
T Consensus 157 -----~k~dp~~~~~~di~~t~~~pla~~~R~~lr~~~~~~~~~~~~~~~~~v~S~ 207 (268)
T PRK15116 157 -----GQIDPTQIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFST 207 (268)
T ss_pred -----cCCCCCeEEEEeeecccCChHHHHHHHHHHHhhCCCcccCccCCeEEEeCC
Confidence 345788889999988765444321 2233 6765 245666664
No 50
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.96 E-value=3e-29 Score=264.90 Aligned_cols=161 Identities=25% Similarity=0.375 Sum_probs=143.0
Q ss_pred ccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHH
Q psy7300 444 RYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKS 523 (986)
Q Consensus 444 rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka 523 (986)
-|+++.+.||.++|++|++++|+||||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||++| .+|+|++|+
T Consensus 10 ~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka 83 (212)
T PRK08644 10 FEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKV 83 (212)
T ss_pred HHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEeccccccccEee-hhhCCChHH
Confidence 3556667799999999999999999999999999999999999 8999999999999999999966 789999999
Q ss_pred HHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHc-CCcEEEEeecCCcceEE
Q psy7300 524 ATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYS-RKPLLESGTLGTKGNSQ 602 (986)
Q Consensus 524 ~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~-~~pli~~g~~G~~G~v~ 602 (986)
++++++++++||+++|+++...+.+++. +++++++|+||+|+||+++|.++++.|+++ ++|+|.++..|..|++.
T Consensus 84 ~~a~~~l~~lnp~v~v~~~~~~i~~~~~----~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~ 159 (212)
T PRK08644 84 EALKENLLEINPFVEIEAHNEKIDEDNI----EELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSN 159 (212)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCHHHH----HHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCce
Confidence 9999999999999999999998875322 478899999999999999999999999999 99999987777777777
Q ss_pred EEeCCC--CccccC
Q psy7300 603 VVVPHL--TESYSS 614 (986)
Q Consensus 603 ~~~p~~--t~cy~c 614 (986)
.+.|.. ..||.|
T Consensus 160 ~~~~~~~~~~~~~~ 173 (212)
T PRK08644 160 SIKTRRIGKNFYIV 173 (212)
T ss_pred EEEecCCCCCeeEC
Confidence 665543 456655
No 51
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.96 E-value=1.9e-29 Score=272.89 Aligned_cols=149 Identities=23% Similarity=0.420 Sum_probs=137.7
Q ss_pred CccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcH
Q psy7300 443 SRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPK 522 (986)
Q Consensus 443 ~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K 522 (986)
.||+||.++||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.||||||+++..+|||++|
T Consensus 11 ~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~K 85 (268)
T PRK15116 11 QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDDVCVTNTNRQIHALRDNVGLAK 85 (268)
T ss_pred HHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCEecccccccccccChhhcChHH
Confidence 69999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEEcccCCccccccccccc-cCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 523 SATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFF-ESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 523 a~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~-~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
++++++++.++||+++|+++...+.+++. ++++ .++|+||+|+|++.++..+++.|+++++|+|.+|..|.+..
T Consensus 86 ve~~~~rl~~INP~~~V~~i~~~i~~e~~----~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~d 160 (268)
T PRK15116 86 AEVMAERIRQINPECRVTVVDDFITPDNV----AEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID 160 (268)
T ss_pred HHHHHHHHHhHCCCcEEEEEecccChhhH----HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence 99999999999999999999887764432 2334 57999999999999999999999999999999987776544
No 52
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.96 E-value=5.7e-29 Score=280.09 Aligned_cols=150 Identities=21% Similarity=0.370 Sum_probs=142.0
Q ss_pred hhccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccC--chH
Q psy7300 55 EGLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVG--RNR 130 (986)
Q Consensus 55 ~~~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diG--k~K 130 (986)
++||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 3699999988 999999999999999999999999999999999999999999999999999999999999995 599
Q ss_pred HHHHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEee
Q psy7300 131 AEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCD 204 (986)
Q Consensus 131 a~a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d 204 (986)
|++++++|+++||+|+|+++...+++ ++++++|+||+|+|+.+.+..+|++|+++++|||++++.|++|+++.-
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~ 159 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTI 159 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEE
Confidence 99999999999999999999887754 468899999999999999999999999999999999999999997654
No 53
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=281.47 Aligned_cols=151 Identities=23% Similarity=0.435 Sum_probs=142.3
Q ss_pred hhccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccC--chH
Q psy7300 55 EGLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVG--RNR 130 (986)
Q Consensus 55 ~~~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diG--k~K 130 (986)
++||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 3699999998 899999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHhhcCCCCEEEeecCCCC----HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeec
Q psy7300 131 AEVSHTNLSQLNPYVSTKAYTGELS----EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDF 205 (986)
Q Consensus 131 a~a~~~~L~~lNp~V~v~~~~~~~~----~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~ 205 (986)
|++++++|+++||+++|+++..+++ +++++++|+||+|+|+.+.+..+|++|+++++|+|++++.|++|+++.-.
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~ 160 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTII 160 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEEC
Confidence 9999999999999999999987775 35678999999999999999999999999999999999999999986543
No 54
>PRK07877 hypothetical protein; Provisional
Probab=99.96 E-value=4.8e-29 Score=301.17 Aligned_cols=184 Identities=21% Similarity=0.337 Sum_probs=160.7
Q ss_pred cccccccchhhhcccccccccccccCccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEE
Q psy7300 418 FQWLYFDAVECIDENIAETDAIVNGSRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVT 497 (986)
Q Consensus 418 ~q~~~fD~~e~l~~~~~~~~~~~~~~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~iv 497 (986)
..|.||==...+-.-+.++++ ...||+||+.+||.++|++|++++|+||||| +||.++.+||++||. |+|+|+
T Consensus 65 ~~w~~~pw~~~~v~~~~~~~~--~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvv----G~l~lv 137 (722)
T PRK07877 65 GRWVYYPWRRTVVHLLGPREF--RAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLC----GELRLA 137 (722)
T ss_pred CcEEEecchhheeecCCHHHh--hHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCC----CeEEEE
Confidence 478888755555444555554 2379999999999999999999999999997 999999999999942 799999
Q ss_pred eCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHH
Q psy7300 498 DMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIY 577 (986)
Q Consensus 498 D~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~ 577 (986)
|.|.||.|||||| +|+..|+|++|+++++++++++||.++|+++...+++++. ++|++++|+||+|+||+++|..
T Consensus 138 D~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~----~~~l~~~DlVvD~~D~~~~R~~ 212 (722)
T PRK07877 138 DFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNV----DAFLDGLDVVVEECDSLDVKVL 212 (722)
T ss_pred cCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHhcCCCEEEECCCCHHHHHH
Confidence 9999999999999 5999999999999999999999999999999999986553 5788999999999999999999
Q ss_pred HHHHHHHcCCcEEEEeecCCcceEE----EEeCCCCccccCCC
Q psy7300 578 MDRRCVYSRKPLLESGTLGTKGNSQ----VVVPHLTESYSSSQ 616 (986)
Q Consensus 578 l~~~c~~~~~pli~~g~~G~~G~v~----~~~p~~t~cy~c~~ 616 (986)
+|+.|+++++|+|.++..+ |++. .+.| .++||.|..
T Consensus 213 ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl~ 252 (722)
T PRK07877 213 LREAARARRIPVLMATSDR--GLLDVERFDLEP-DRPILHGLL 252 (722)
T ss_pred HHHHHHHcCCCEEEEcCCC--CCcCcceeeeCC-CCceeeccC
Confidence 9999999999999998555 6653 2345 689999953
No 55
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.96 E-value=2.2e-28 Score=240.85 Aligned_cols=134 Identities=30% Similarity=0.562 Sum_probs=122.4
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
+++||+|+|+||+||+++++|+++|+ |+|+|+|+|.|+.+||+||+||+.+|+|++|+++++++++++||.++|+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~ 75 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVE 75 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeee
Confidence 47899999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEEE
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQV 603 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~~ 603 (986)
++...+.++. ..++++++|+||+|+|+.++|.+++++|+++++|+|++|+.|+.|+++.
T Consensus 76 ~~~~~~~~~~----~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 76 AIPEKIDEEN----IEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp EEESHCSHHH----HHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred eeeccccccc----ccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 9999985322 2577799999999999999999999999999999999999999999864
No 56
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=2.7e-28 Score=259.78 Aligned_cols=155 Identities=27% Similarity=0.417 Sum_probs=135.5
Q ss_pred cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHH
Q psy7300 452 FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIK 531 (986)
Q Consensus 452 ~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~ 531 (986)
+|.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.||||||++++.+|||++|+++++++++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 69999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceE-EEEeCCCCc
Q psy7300 532 VMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNS-QVVVPHLTE 610 (986)
Q Consensus 532 ~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v-~~~~p~~t~ 610 (986)
++||+++|+++...+.+++. +.-+..++|+||+|+|+..+|..++++|+.+++|+|.++..|.+..- ++-+.....
T Consensus 76 ~inP~~~V~~~~~~i~~~~~---~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNS---EDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISK 152 (231)
T ss_pred HHCCCcEEEEeeeecCHhHH---HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEec
Confidence 99999999999998875443 12233579999999999999999999999999999999988877542 223334444
Q ss_pred cccC
Q psy7300 611 SYSS 614 (986)
Q Consensus 611 cy~c 614 (986)
.+.|
T Consensus 153 t~~~ 156 (231)
T cd00755 153 TSGD 156 (231)
T ss_pred cccC
Confidence 4433
No 57
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=9.7e-28 Score=255.51 Aligned_cols=174 Identities=21% Similarity=0.306 Sum_probs=152.2
Q ss_pred ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCC
Q psy7300 65 LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPY 144 (986)
Q Consensus 65 ~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~ 144 (986)
+|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||+++.++|+|++||++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeecCCCCH----hhh-ccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecCCceEEEcCCCCCC
Q psy7300 145 VSTKAYTGELSE----AFI-KKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTTGENP 219 (986)
Q Consensus 145 V~v~~~~~~~~~----~~l-~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~~~~~e~p 219 (986)
++|+.+...+++ +++ .+||+||+|.|+.+.+..|+++|+++++|||++++.| +.-+|
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g------------------~~~dp 142 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG------------------GKLDP 142 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc------------------CCCCC
Confidence 999999887753 344 4799999999999999999999999999999998877 34568
Q ss_pred ceeEEeceecccCcccccc---cccccCCCCCceEEEEee
Q psy7300 220 VSVIIAGVTREAEGVVTCL---DETRHGFEDGDYVTFSEV 256 (986)
Q Consensus 220 ~~~~i~~i~~~~~~~v~~~---~~~~h~~~~gd~v~f~ev 256 (986)
....+.+|+++....+... ..++++...|..|+||..
T Consensus 143 ~~i~i~di~~t~~~pla~~~R~~Lrk~~~~~~~~~v~S~E 182 (231)
T cd00755 143 TRIRVADISKTSGDPLARKVRKRLRKRGIFFGVPVVYSTE 182 (231)
T ss_pred CeEEEccEeccccCcHHHHHHHHHHHcCCCCCeEEEeCCC
Confidence 8888999987765443321 233455556778888764
No 58
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.95 E-value=7.4e-28 Score=281.44 Aligned_cols=158 Identities=25% Similarity=0.271 Sum_probs=138.0
Q ss_pred cCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCC---CCcHHHHHHH
Q psy7300 452 FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDV---QQPKSATAAK 528 (986)
Q Consensus 452 ~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~di---G~~Ka~~a~~ 528 (986)
+..-+.++|+++||+||||||+||++|++|+++|| |+|+|||+|+|+.|||+||+||+.+|+ |++||++|++
T Consensus 328 lP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV-----g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~ 402 (664)
T TIGR01381 328 HPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV-----RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQK 402 (664)
T ss_pred CChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHH
Confidence 34444599999999999999999999999999999 899999999999999999999999999 9999999999
Q ss_pred HHHhhCCCceEEEEEccc-------CCccc-ccc-----ccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeec
Q psy7300 529 AIKVMNPNVNITYHENRV-------GPETE-KVY-----DDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTL 595 (986)
Q Consensus 529 ~l~~~np~~~i~~~~~~v-------~~~~~-~~~-----~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~ 595 (986)
+|+++||+++|+++..++ ++..+ ... -.++++++|+|++|+||.++|..++.+|+.+++|+|+++ .
T Consensus 403 ~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-l 481 (664)
T TIGR01381 403 ALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-L 481 (664)
T ss_pred HHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-e
Confidence 999999999999998884 32110 000 146889999999999999999999999999999999985 8
Q ss_pred CCcceEEEEe------------------CCCCccccCC
Q psy7300 596 GTKGNSQVVV------------------PHLTESYSSS 615 (986)
Q Consensus 596 G~~G~v~~~~------------------p~~t~cy~c~ 615 (986)
|+.|++...- +...+||.|.
T Consensus 482 Gfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~ 519 (664)
T TIGR01381 482 GFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCN 519 (664)
T ss_pred ccceEEEEEecccccccccccccccccCCCCCCccccC
Confidence 9999987651 1247899996
No 59
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=9.3e-28 Score=299.79 Aligned_cols=154 Identities=20% Similarity=0.322 Sum_probs=146.5
Q ss_pred hhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCC-----CeEEEEeCCCCCccCCCcccccCcCccCc
Q psy7300 54 DEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGV-----KSVTLHDTTATSLSDLSSQFYLSEKDVGR 128 (986)
Q Consensus 54 ~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GV-----g~itlvD~d~V~~sdl~rqf~~~~~diGk 128 (986)
..+|||||+++||.++|++|++++|+|+|+||+|+|++|||+++|| |+|+|+|.|.|+.+||+|||+++.+|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 4689999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCEEEeecCCCC--------HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEE
Q psy7300 129 NRAEVSHTNLSQLNPYVSTKAYTGELS--------EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQ 200 (986)
Q Consensus 129 ~Ka~a~~~~L~~lNp~V~v~~~~~~~~--------~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~ 200 (986)
+||++++++|+++||+++|+++...+. ++|++++|+||+|.|+.+.|..+++.|+.+++|+|.+++.|+.|+
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~ 557 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGN 557 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceee
Confidence 999999999999999999999876652 467899999999999999999999999999999999999999999
Q ss_pred EEeecCC
Q psy7300 201 VFCDFGN 207 (986)
Q Consensus 201 vf~d~g~ 207 (986)
+++-.+.
T Consensus 558 v~v~ip~ 564 (1008)
T TIGR01408 558 TQVVVPH 564 (1008)
T ss_pred EEEEeCC
Confidence 9887655
No 60
>PRK14852 hypothetical protein; Provisional
Probab=99.95 E-value=6.6e-28 Score=293.55 Aligned_cols=180 Identities=20% Similarity=0.266 Sum_probs=158.7
Q ss_pred CCccccccccccccCCCCCCCCCCchhhhhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEE
Q psy7300 26 NTTCETFNMESVANHQNGSSATAMDQDIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLH 105 (986)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlv 105 (986)
+.++++...+++....-.|-..+...+.-..+|+||+++||.++|+||++++|+|+||||||+++|++|+++|||+|+|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~ 362 (989)
T PRK14852 283 HFSTNPVHPETPGGVPLDMLKLETRDAYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLA 362 (989)
T ss_pred CCCCCCCCCCCCCCCchHHHhHHHHHHHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence 35556666665555554555555556667789999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCH--HHHHHHH
Q psy7300 106 DTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTY--DEQLAIS 179 (986)
Q Consensus 106 D~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~--~~~~~i~ 179 (986)
|+|.|+.+||+|||+++.+|||++||++++++|+++||+|+|+++...+++ +|++++|+||+|.|+. +.+..++
T Consensus 363 D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~ 442 (989)
T PRK14852 363 DFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLF 442 (989)
T ss_pred cCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877743 5789999999999964 5677888
Q ss_pred HHHHHcCCcEEEeecccceEEEEeec
Q psy7300 180 QITHANDIALIIADTRGLFAQVFCDF 205 (986)
Q Consensus 180 ~~c~~~~ip~I~~~~~G~~G~vf~d~ 205 (986)
+.|++++||+|++++.|+.|++++-.
T Consensus 443 ~~c~~~~IP~I~ag~~G~~g~v~v~~ 468 (989)
T PRK14852 443 NRALELGIPVITAGPLGYSCALLVFM 468 (989)
T ss_pred HHHHHcCCCEEEeeccccCeeEEEEc
Confidence 89999999999999999999987543
No 61
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.95 E-value=9.5e-28 Score=247.46 Aligned_cols=186 Identities=20% Similarity=0.314 Sum_probs=163.9
Q ss_pred hhhhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHH
Q psy7300 52 DIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRA 131 (986)
Q Consensus 52 ~i~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka 131 (986)
+.-.++|.|.-+|+|.++++||++++|+|+|+|||||+++..|+|+|||+|+|+|.|.|+.+|+|||......+||++|+
T Consensus 7 ~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv 86 (263)
T COG1179 7 DAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV 86 (263)
T ss_pred HHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCEEEeecCCCCHhh-----hccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecC
Q psy7300 132 EVSHTNLSQLNPYVSTKAYTGELSEAF-----IKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFG 206 (986)
Q Consensus 132 ~a~~~~L~~lNp~V~v~~~~~~~~~~~-----l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g 206 (986)
++++++++++||+++|..+...++++. ..+||+||+|.|+......|..+|++++||+|+++..|
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag---------- 156 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG---------- 156 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc----------
Confidence 999999999999999999998887653 35799999999999999999999999999999999888
Q ss_pred CceEEEcCCCCCCceeEEeceecccCcccccc---ccccc--CCCCCceEEEEe
Q psy7300 207 NNFTVVDTTGENPVSVIIAGVTREAEGVVTCL---DETRH--GFEDGDYVTFSE 255 (986)
Q Consensus 207 ~~f~v~~~~~e~p~~~~i~~i~~~~~~~v~~~---~~~~h--~~~~gd~v~f~e 255 (986)
...+|+...+.+|+++....+... ..+++ +..-|..++||.
T Consensus 157 --------~k~DPTri~v~DiskT~~DPLa~~vR~~LRk~~~~~~~gi~vVfS~ 202 (263)
T COG1179 157 --------GKLDPTRIQVADISKTIQDPLAAKVRRKLRKRFPKIKFGVPVVFST 202 (263)
T ss_pred --------CCCCCceEEeeechhhccCcHHHHHHHHHHHhccCCccCCceEecC
Confidence 557899999999988776554432 22223 455556667764
No 62
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.95 E-value=1.8e-27 Score=273.11 Aligned_cols=150 Identities=25% Similarity=0.369 Sum_probs=143.1
Q ss_pred hhccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHH
Q psy7300 55 EGLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAE 132 (986)
Q Consensus 55 ~~~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~ 132 (986)
.++|+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||++++++|||++||+
T Consensus 113 ~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~ 192 (376)
T PRK08762 113 DERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVD 192 (376)
T ss_pred HHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHH
Confidence 4789999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEee
Q psy7300 133 VSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCD 204 (986)
Q Consensus 133 a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d 204 (986)
+++++|+++||+++|+.+...+++ ++++++|+||+|+|+.+.+..+|++|+++++|||++++.|+.|++..-
T Consensus 193 ~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~ 268 (376)
T PRK08762 193 SAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVF 268 (376)
T ss_pred HHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEE
Confidence 999999999999999998877753 467899999999999999999999999999999999999999998753
No 63
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.95 E-value=4.8e-28 Score=269.81 Aligned_cols=165 Identities=14% Similarity=0.174 Sum_probs=147.5
Q ss_pred ccchhhhcccccccccccccCccchhhhc---cC-HHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 423 FDAVECIDENIAETDAIVNGSRYEGQVAI---FG-KNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 423 fD~~e~l~~~~~~~~~~~~~~rydrqi~~---~G-~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
+|.++-+-++++.++. .||.||+.+ || .++|++|++++|+ |||+||.++.+||. || |+|+|+|
T Consensus 37 ~~~~~~~~~~l~~~~~----~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GV-----g~L~ivD 103 (318)
T TIGR03603 37 EDAYENDLETLTKFNL----ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NV-----GALFISD 103 (318)
T ss_pred hHHHHhhhhccCHHHH----HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CC-----CEEEEEc
Confidence 5555432223555554 799999988 55 5589999999999 99999999999999 99 8999999
Q ss_pred CCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHH-
Q psy7300 499 MDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIY- 577 (986)
Q Consensus 499 ~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~- 577 (986)
.|.||.|||+ +||+.+|||++|+++|++++.++||+++|+.+ .++++++|+|++|+||+.+|..
T Consensus 104 ~D~Ve~SNL~--~L~~~~diG~~K~~~a~~~L~~lnp~v~i~~~-------------~~li~~~DlVid~tDn~~~r~L~ 168 (318)
T TIGR03603 104 KTYFQETAEI--DLYSKEFILKKDIRDLTSNLDALELTKNVDEL-------------KDLLKDYNYIIICTEHSNISLLR 168 (318)
T ss_pred CCEechhhHH--HHhChhhcCcHHHHHHHHHHHHhCCCCEEeeH-------------HHHhCCCCEEEECCCCccHhHHH
Confidence 9999999999 99999999999999999999999999999753 3567899999999999999965
Q ss_pred -HHHHHHHcCCcEEEEeecCCcceEEEEeCCCCccccCC
Q psy7300 578 -MDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSS 615 (986)
Q Consensus 578 -l~~~c~~~~~pli~~g~~G~~G~v~~~~p~~t~cy~c~ 615 (986)
+|+.|++.++|+|.++..|+.|++.++.|+.|+||+|-
T Consensus 169 ~iN~ac~~~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl 207 (318)
T TIGR03603 169 GLNKLSKETKKPNTIAFIDGPFVFITCTLPPETGCFECL 207 (318)
T ss_pred HHHHHHHHHCCCEEEEEEccCEEEEEEEeCCCCCcHHHc
Confidence 99999999999999999999999999999999999995
No 64
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.95 E-value=2.7e-27 Score=257.95 Aligned_cols=163 Identities=32% Similarity=0.477 Sum_probs=149.7
Q ss_pred hhhhhccccchhcccHH--HHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCch
Q psy7300 52 DIDEGLYSRQLYVLGHD--AMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRN 129 (986)
Q Consensus 52 ~i~~~~y~Rqi~l~G~~--~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~ 129 (986)
..+..||+||+++|+.. +|++|++++|+|+|+||+|++++++|+++|||+++|+|+|.|+.+||+||++++++|+|++
T Consensus 5 ~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~ 84 (254)
T COG0476 5 DEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKP 84 (254)
T ss_pred HHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCc
Confidence 45668999999996654 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeec
Q psy7300 130 RAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDF 205 (986)
Q Consensus 130 Ka~a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~ 205 (986)
||+++++.|+++||.++++.+...++. +++.++|+|++|+|+++++..+|+.|+.+++|++++++.|++|++++..
T Consensus 85 Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~ 164 (254)
T COG0476 85 KAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVII 164 (254)
T ss_pred HHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEe
Confidence 999999999999999999999887743 5788999999999999999999999999999999999999999999887
Q ss_pred CC----ceEEEcC
Q psy7300 206 GN----NFTVVDT 214 (986)
Q Consensus 206 g~----~f~v~~~ 214 (986)
.. ++.|+.+
T Consensus 165 ~~~~~~c~~~~~~ 177 (254)
T COG0476 165 PGDKTPCYRCLFP 177 (254)
T ss_pred cCCCCCcccccCC
Confidence 54 4554443
No 65
>KOG2017|consensus
Probab=99.94 E-value=4e-28 Score=258.72 Aligned_cols=184 Identities=27% Similarity=0.359 Sum_probs=164.1
Q ss_pred hhccccchhc--ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHH
Q psy7300 55 EGLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAE 132 (986)
Q Consensus 55 ~~~y~Rqi~l--~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~ 132 (986)
-.||+||+.+ +|..||.+|++++|||||+||+|+-.+..|+.+|||++.|+|.|.|+.+||.||.+.+++.+|+.||+
T Consensus 44 i~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~ 123 (427)
T KOG2017|consen 44 ILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAE 123 (427)
T ss_pred HHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHH
Confidence 4899999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEe---ec
Q psy7300 133 VSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFC---DF 205 (986)
Q Consensus 133 a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~---d~ 205 (986)
+++..++.+||.|+|+.+.+.++. +++++||+|++|+|+..+|..|++.|...|+|+|++...++.|++-+ +-
T Consensus 124 sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~ 203 (427)
T KOG2017|consen 124 SAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNN 203 (427)
T ss_pred HHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecCC
Confidence 999999999999999999988853 57899999999999999999999999999999999999999999832 67
Q ss_pred CCceEEEcCCCCCCc---eeEEeceecccCcccccc
Q psy7300 206 GNNFTVVDTTGENPV---SVIIAGVTREAEGVVTCL 238 (986)
Q Consensus 206 g~~f~v~~~~~e~p~---~~~i~~i~~~~~~~v~~~ 238 (986)
|+||+|+.+++.+|- .|--..+-....|++.+|
T Consensus 204 GPCYRClFP~Ppp~~~vt~C~dgGVlGpv~GviG~m 239 (427)
T KOG2017|consen 204 GPCYRCLFPNPPPPEAVTNCADGGVLGPVTGVIGCM 239 (427)
T ss_pred CceeeecCCCCcChHHhcccccCceeecchhhhhHH
Confidence 889999999887653 332233333333555554
No 66
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.94 E-value=3.5e-26 Score=243.86 Aligned_cols=130 Identities=25% Similarity=0.432 Sum_probs=123.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC--
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL-- 154 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~-- 154 (986)
||+|+|+||+|+|++|+|+++|||+|+|+|.|.|+.+||+||||++++|+|++||++++++|+++||+++|+.+...+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred ----CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecC
Q psy7300 155 ----SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFG 206 (986)
Q Consensus 155 ----~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g 206 (986)
+++++++||+||+|.|+.+.|..+|++|+.+++|+|.+++.|+.|++++-.+
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p 136 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILP 136 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcC
Confidence 3468999999999999999999999999999999999999999999876653
No 67
>PRK14851 hypothetical protein; Provisional
Probab=99.94 E-value=4.9e-27 Score=283.53 Aligned_cols=155 Identities=18% Similarity=0.324 Sum_probs=145.5
Q ss_pred chhhhhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCch
Q psy7300 50 DQDIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRN 129 (986)
Q Consensus 50 ~~~i~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~ 129 (986)
..+...++|+||+++||.++|++|++++|+|+||||||++++++|+++|||+|+|+|+|.|+++||+||++++.+|||++
T Consensus 18 ~~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~ 97 (679)
T PRK14851 18 AAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRP 97 (679)
T ss_pred HHHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCH
Confidence 45666799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCC--HHHHHHHHHHHHHcCCcEEEeecccceEEEEe
Q psy7300 130 RAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNST--YDEQLAISQITHANDIALIIADTRGLFAQVFC 203 (986)
Q Consensus 130 Ka~a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~--~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~ 203 (986)
||++++++|+++||+++|+++...+++ ++++++|+||+|.|+ .+.+..+++.|++++||+|.+++.|+.|++++
T Consensus 98 Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~ 177 (679)
T PRK14851 98 KLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLV 177 (679)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEE
Confidence 999999999999999999999988854 478999999999996 56788999999999999999999999999875
Q ss_pred e
Q psy7300 204 D 204 (986)
Q Consensus 204 d 204 (986)
-
T Consensus 178 ~ 178 (679)
T PRK14851 178 F 178 (679)
T ss_pred E
Confidence 3
No 68
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.94 E-value=7.4e-27 Score=232.33 Aligned_cols=133 Identities=37% Similarity=0.635 Sum_probs=126.1
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHE 543 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~ 543 (986)
+|+||||||+||+++++|+++|+ |+|+|+|+|.|+.+||+||++++.+|+|++|+++++++++++||+++|+++.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe
Confidence 69999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEEEEe
Q psy7300 544 NRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVV 605 (986)
Q Consensus 544 ~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~~~~ 605 (986)
..+.+.+. .+++.++|+||+|.|+.++|.+++++|+++++|+|++|+.|+.|+++++.
T Consensus 76 ~~~~~~~~----~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 76 EGISEDNL----DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 88764322 57889999999999999999999999999999999999999999999886
No 69
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.94 E-value=2.7e-26 Score=248.54 Aligned_cols=181 Identities=23% Similarity=0.247 Sum_probs=142.5
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCC--CCCcHHHHHHHHHHhhCCCceEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHD--VQQPKSATAAKAIKVMNPNVNITY 541 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~d--iG~~Ka~~a~~~l~~~np~~~i~~ 541 (986)
||+||||||+||+++++|+++|| |+|+|+|+|+|+.|||+||+||+.+| +|++|+++|+++|+++||+++|++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 69999999999999999999999 89999999999999999999999999 999999999999999999999999
Q ss_pred EEcccC-------Cc----ccccc--ccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceEEEEeCC-
Q psy7300 542 HENRVG-------PE----TEKVY--DDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPH- 607 (986)
Q Consensus 542 ~~~~v~-------~~----~~~~~--~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v~~~~p~- 607 (986)
+...+. +. ....+ -.++++++|+|++|+||.++|..++.+|..+++|+|++ ..|+.|++..--..
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg~~ 154 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHGAG 154 (307)
T ss_pred eeeeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeCCC
Confidence 987651 00 00001 14788999999999999999999999999999999984 67999887654311
Q ss_pred ------------------CCccccCCC--CCCC-----CCCCcccccCCCCcchhhHHHHHHHhhhHhh
Q psy7300 608 ------------------LTESYSSSQ--DPPE-----KSIPICTLKNFPNAIEHTLQWARDNFEGIFR 651 (986)
Q Consensus 608 ------------------~t~cy~c~~--~~~~-----~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~F~ 651 (986)
.-.||-|.. .|.. .--..||+ .-|..---+-..|-++|-.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctv-trpG~a~ias~~avEl~~s~lq 222 (307)
T cd01486 155 PQSQSGSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTV-TRPGLSMIASSIAVELLVSLLQ 222 (307)
T ss_pred cccccccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccce-ecCchHHHHHHHHHHHHHHHHc
Confidence 357999942 1211 22346886 3455433344556666555444
No 70
>KOG2013|consensus
Probab=99.94 E-value=6e-27 Score=258.28 Aligned_cols=173 Identities=22% Similarity=0.439 Sum_probs=153.9
Q ss_pred HHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEE
Q psy7300 68 DAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVST 147 (986)
Q Consensus 68 ~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v 147 (986)
+-++++.++||||||+||+|+|++|||+++|+++|+|+|-|.++.|||+||||++.+|||++||.++++..+++||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC-----CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecC---CceEEEcCCCCCC
Q psy7300 148 KAYTGEL-----SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFG---NNFTVVDTTGENP 219 (986)
Q Consensus 148 ~~~~~~~-----~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g---~~f~v~~~~~e~p 219 (986)
..+..++ +-+|+++||+|..|.|+.+.|..+|++|....+|+|.+++.|+.||+.+-.. +||.|.. .+.|
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~p--K~~~ 162 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIP--KPVP 162 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccC--CCCC
Confidence 9988776 3468999999999999999999999999999999999999999999987553 3777765 3456
Q ss_pred ceeEEeceecccCcccccccccc
Q psy7300 220 VSVIIAGVTREAEGVVTCLDETR 242 (986)
Q Consensus 220 ~~~~i~~i~~~~~~~v~~~~~~~ 242 (986)
.+..+..|.++....++|.-+-+
T Consensus 163 kTypvCTIRstPS~~iHCIVWAK 185 (603)
T KOG2013|consen 163 KTYPVCTIRSTPSEPIHCIVWAK 185 (603)
T ss_pred CcCCceEeecCCCCceeeeeehH
Confidence 67778888777666677765444
No 71
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.94 E-value=5.9e-26 Score=223.66 Aligned_cols=130 Identities=34% Similarity=0.561 Sum_probs=120.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
+++||+|+|+||+|+++|++|+++||++|+|+|+|.|+++|++||++++.+|+|++||++++++|+++||+++++.+...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEe
Q psy7300 154 LSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFC 203 (986)
Q Consensus 154 ~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~ 203 (986)
+++ ++++++|+||+|.++.+.+..++++|+++++|||++++.|++|++..
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 843 46789999999999999999999999999999999999999999853
No 72
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.94 E-value=1.1e-26 Score=241.73 Aligned_cols=119 Identities=24% Similarity=0.409 Sum_probs=110.8
Q ss_pred hhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHH
Q psy7300 54 DEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEV 133 (986)
Q Consensus 54 ~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a 133 (986)
+.+||||||++||.++|+||++++|||+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||+++ |+|++||++
T Consensus 5 E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAea 83 (287)
T PTZ00245 5 EAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGAR 83 (287)
T ss_pred HHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHH
Confidence 3579999999999999999999999999999999999999999999999999999999999999999997 689999999
Q ss_pred HHHHHhhcCCCCEEEeecCCCCHhhhccccEEEEecCCHHHH
Q psy7300 134 SHTNLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTNSTYDEQ 175 (986)
Q Consensus 134 ~~~~L~~lNp~V~v~~~~~~~~~~~l~~~dvVI~~~~~~~~~ 175 (986)
++++|+++||+|+|+.+...+++ -.+|++||.+..+.+..
T Consensus 84 Aa~~L~eLNP~V~V~~i~~rld~--~n~fqvvV~~~~~le~a 123 (287)
T PTZ00245 84 ALGALQRLNPHVSVYDAVTKLDG--SSGTRVTMAAVITEEDA 123 (287)
T ss_pred HHHHHHHHCCCcEEEEcccccCC--cCCceEEEEEcccHHHH
Confidence 99999999999999999877755 34899999999876654
No 73
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.94 E-value=4.4e-26 Score=233.81 Aligned_cols=142 Identities=25% Similarity=0.394 Sum_probs=129.2
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHE 543 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~ 543 (986)
||+|+||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+ |..+|+|++|+++++++++++||.++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~v~~sNl~Rq~-~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~ 74 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDVVEPSNLNRQQ-YFLSQIGEPKVEALKENLREINPFVKIEAIN 74 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcCcchhccc-ccHhhCCChHHHHHHHHHHHHCCCCEEEEEE
Confidence 69999999999999999999999 89999999999999999999 5578999999999999999999999999999
Q ss_pred cccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHc-CCcEEEEeecCCcceEEEEeCCC--CccccCC
Q psy7300 544 NRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYS-RKPLLESGTLGTKGNSQVVVPHL--TESYSSS 615 (986)
Q Consensus 544 ~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~-~~pli~~g~~G~~G~v~~~~p~~--t~cy~c~ 615 (986)
.++.+++ .+++++++|+||+|+||+++|..+++.|.+. ++|+|.++..|..|++..+.|.. .+||.|.
T Consensus 75 ~~~~~~~----~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 75 IKIDENN----LEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred eecChhh----HHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 9886532 2578999999999999999999888877776 99999999999999999887655 5799986
No 74
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.93 E-value=1.6e-26 Score=238.38 Aligned_cols=149 Identities=29% Similarity=0.448 Sum_probs=138.7
Q ss_pred cCccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCc
Q psy7300 442 GSRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQP 521 (986)
Q Consensus 442 ~~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~ 521 (986)
..|+.|.-+++|+++.++|++++|+|||+||+||.++..|||+|+ |+|+|||+|.|..+|+|||.--...+||++
T Consensus 10 ~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGi-----g~itlID~D~v~vTN~NRQi~A~~~~iGk~ 84 (263)
T COG1179 10 RQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGI-----GRITLIDMDDVCVTNTNRQIHALLGDIGKP 84 (263)
T ss_pred HHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCC-----CeEEEEecccccccccchhhHhhhhhcccH
Confidence 468999999999999999999999999999999999999999999 899999999999999999998888999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy7300 522 KSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTK 598 (986)
Q Consensus 522 Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~ 598 (986)
|+++++++++.+||.++|.+++..+.+++.+ +-+..++|+||||.|++.++..+-.+|+.+++|+|.+|..|.+
T Consensus 85 Kv~vm~eri~~InP~c~V~~~~~f~t~en~~---~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k 158 (263)
T COG1179 85 KVEVMKERIKQINPECEVTAINDFITEENLE---DLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGK 158 (263)
T ss_pred HHHHHHHHHHhhCCCceEeehHhhhCHhHHH---HHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCC
Confidence 9999999999999999999999999876653 3345689999999999999999999999999999999866644
No 75
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.93 E-value=3.4e-25 Score=253.26 Aligned_cols=136 Identities=23% Similarity=0.367 Sum_probs=126.9
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC-----CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGV-----KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GV-----g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
+|+|||+||+|+|++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||++||++++++++++||+|+|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred CCCC--------HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecCC---ceEEE
Q psy7300 152 GELS--------EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGN---NFTVV 212 (986)
Q Consensus 152 ~~~~--------~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g~---~f~v~ 212 (986)
..++ +++++++|+||+|.|+.+.|..+++.|+.+++|+|.+++.|+.|++.+-.+. +|.+.
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~ 152 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSS 152 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCC
Confidence 7653 4678999999999999999999999999999999999999999999877653 55554
No 76
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.93 E-value=9.5e-26 Score=238.31 Aligned_cols=142 Identities=23% Similarity=0.321 Sum_probs=129.3
Q ss_pred cccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHH
Q psy7300 58 YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTN 137 (986)
Q Consensus 58 y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~ 137 (986)
+.++...||.++|+||++++|+|+|+||+|+++|++|+++||++|+|+|.|.|+.+||+||+|+ ++|+|++||++++++
T Consensus 11 ~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~ 89 (212)
T PRK08644 11 EAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKEN 89 (212)
T ss_pred HHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHH
Confidence 3344444999999999999999999999999999999999999999999999999999999976 689999999999999
Q ss_pred HhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHc-CCcEEEeecccceEE
Q psy7300 138 LSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHAN-DIALIIADTRGLFAQ 200 (986)
Q Consensus 138 L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~-~ip~I~~~~~G~~G~ 200 (986)
|+++||+++++.+...+++ ++++++|+||+|.|+.+.+..+++.|+++ ++|+|++...|.+|+
T Consensus 90 l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 90 LLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred HHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 9999999999999887754 57889999999999999999999999999 999999976665554
No 77
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.93 E-value=1.7e-25 Score=222.50 Aligned_cols=129 Identities=34% Similarity=0.450 Sum_probs=123.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCCCH
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE 156 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~~~ 156 (986)
+|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++||+|++.+|+|++||++++++|+++||+++++.+...+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999877653
Q ss_pred ----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeec
Q psy7300 157 ----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDF 205 (986)
Q Consensus 157 ----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~ 205 (986)
++++++|+||+|.++.+.+..++++|+++++|||.+++.|+.|++|++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 5789999999999999999999999999999999999999999999876
No 78
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.92 E-value=1.2e-24 Score=227.69 Aligned_cols=155 Identities=27% Similarity=0.443 Sum_probs=128.9
Q ss_pred hhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHH
Q psy7300 448 QVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAA 527 (986)
Q Consensus 448 qi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~ 527 (986)
+.+-+|++.|++|++++|+||||||+||+++++|+++|+ |+++|+|.|.|+.+||+||+ |+.+|+|++|+++++
T Consensus 7 ~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 7 LVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGI-----GKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALK 80 (200)
T ss_pred HHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCCEEccccccccc-CChhhCCCHHHHHHH
Confidence 345589999999999999999999999999999999999 89999999999999999997 677999999999999
Q ss_pred HHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHH-HcC-CcEEEEeecCCcceE--EE
Q psy7300 528 KAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCV-YSR-KPLLESGTLGTKGNS--QV 603 (986)
Q Consensus 528 ~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~-~~~-~pli~~g~~G~~G~v--~~ 603 (986)
++++++||.++++++..++.+++. .+++.++|+||+|+||+++|..+.+.|. .++ .+++.+ .|..|+. ..
T Consensus 81 ~~l~~inp~~~i~~~~~~i~~~~~----~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~ 154 (200)
T TIGR02354 81 ENISEINPYTEIEAYDEKITEENI----DKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANS 154 (200)
T ss_pred HHHHHHCCCCEEEEeeeeCCHhHH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCce
Confidence 999999999999999998875332 5678999999999999999998765554 444 455553 3444433 33
Q ss_pred EeC--CCCccccC
Q psy7300 604 VVP--HLTESYSS 614 (986)
Q Consensus 604 ~~p--~~t~cy~c 614 (986)
+.+ ....||.|
T Consensus 155 ~~~~~~~~~~~~~ 167 (200)
T TIGR02354 155 IKTRKISKHFYLC 167 (200)
T ss_pred EEecccCCCEEEc
Confidence 423 23579999
No 79
>KOG2018|consensus
Probab=99.91 E-value=1e-24 Score=229.49 Aligned_cols=189 Identities=21% Similarity=0.319 Sum_probs=168.6
Q ss_pred chhhhhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCch
Q psy7300 50 DQDIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRN 129 (986)
Q Consensus 50 ~~~i~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~ 129 (986)
++++-.+...|++.++|.++|+||+++-|+|||+||+||+++-.|+|+||++|.|+|+|.|+.+.|+||...+..|||.|
T Consensus 49 dd~lireqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~P 128 (430)
T KOG2018|consen 49 DDELIREQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTP 128 (430)
T ss_pred cHHHHHHHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCc
Confidence 55666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCEEEeecCCCC----Hhh-hccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEee
Q psy7300 130 RAEVSHTNLSQLNPYVSTKAYTGELS----EAF-IKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCD 204 (986)
Q Consensus 130 Ka~a~~~~L~~lNp~V~v~~~~~~~~----~~~-l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d 204 (986)
|+.+++++++++.|+++|++...-++ +++ +.+.|+||+|.|++++...|.++|+.+++++|++.+.+
T Consensus 129 K~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Gaa-------- 200 (430)
T KOG2018|consen 129 KVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAA-------- 200 (430)
T ss_pred hHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCcc--------
Confidence 99999999999999999998765543 344 46799999999999999999999999999999998777
Q ss_pred cCCceEEEcCCCCCCceeEEeceecccCcccccc---cccccCCCCCceEEEEee
Q psy7300 205 FGNNFTVVDTTGENPVSVIIAGVTREAEGVVTCL---DETRHGFEDGDYVTFSEV 256 (986)
Q Consensus 205 ~g~~f~v~~~~~e~p~~~~i~~i~~~~~~~v~~~---~~~~h~~~~gd~v~f~ev 256 (986)
...+|+...|.+|+.+....++.. ..++||+..|.+|+|+.-
T Consensus 201 ----------aksDPTrv~v~Dis~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 201 ----------AKSDPTRVNVADISETEEDPLSRSVRRRLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred ----------ccCCCceeehhhccccccCcHHHHHHHHHHHhccccCCceEEecC
Confidence 456899999999988776666543 344799999999999853
No 80
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.91 E-value=7.3e-25 Score=228.23 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=106.5
Q ss_pred CccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcH
Q psy7300 443 SRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPK 522 (986)
Q Consensus 443 ~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K 522 (986)
.|||||+++||.++|+||++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++. ++|++|
T Consensus 7 ~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGV-----GsItIvDdD~Ve~SNL~RQfl~~~-dvGk~K 80 (287)
T PTZ00245 7 VRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGV-----RAVAVADEGLVTDADVCTNYLMQG-EAGGTR 80 (287)
T ss_pred HHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCC-----CeEEEecCCccchhhhcccccccc-ccCCcH
Confidence 79999999999999999999999999999999999999999999 899999999999999999999997 689999
Q ss_pred HHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHH
Q psy7300 523 SATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVE 573 (986)
Q Consensus 523 a~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ 573 (986)
+++++++++++||.++|+++..++++ -++|++|+.+.-+.+
T Consensus 81 AeaAa~~L~eLNP~V~V~~i~~rld~----------~n~fqvvV~~~~~le 121 (287)
T PTZ00245 81 GARALGALQRLNPHVSVYDAVTKLDG----------SSGTRVTMAAVITEE 121 (287)
T ss_pred HHHHHHHHHHHCCCcEEEEcccccCC----------cCCceEEEEEcccHH
Confidence 99999999999999999999888753 257888888855444
No 81
>PRK07877 hypothetical protein; Provisional
Probab=99.91 E-value=1.7e-24 Score=261.81 Aligned_cols=151 Identities=22% Similarity=0.348 Sum_probs=140.6
Q ss_pred CCchhhhhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCCCCccCCCcccccCcCcc
Q psy7300 48 AMDQDIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGV-KSVTLHDTTATSLSDLSSQFYLSEKDV 126 (986)
Q Consensus 48 ~~~~~i~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GV-g~itlvD~d~V~~sdl~rqf~~~~~di 126 (986)
....++-..||+||+.+||.++|+||++++|+|+|+| +|+.+|.+|+++|| |+|+|+|+|.|+.+||+|| +++..|+
T Consensus 80 ~~~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di 157 (722)
T PRK07877 80 LGPREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL 157 (722)
T ss_pred CCHHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc
Confidence 3567888899999999999999999999999999996 99999999999996 9999999999999999998 4688999
Q ss_pred CchHHHHHHHHHhhcCCCCEEEeecCCCCH----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEE
Q psy7300 127 GRNRAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVF 202 (986)
Q Consensus 127 Gk~Ka~a~~~~L~~lNp~V~v~~~~~~~~~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf 202 (986)
|++||++++++|+++||+++|+++...+++ ++++++|+||+|.|+++.+..+|+.|++++||+|+++..+ |++.
T Consensus 158 G~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~ 235 (722)
T PRK07877 158 GVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLD 235 (722)
T ss_pred ccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcC
Confidence 999999999999999999999999998865 4678999999999999999999999999999999998655 7764
No 82
>KOG2015|consensus
Probab=99.91 E-value=7.3e-24 Score=223.99 Aligned_cols=143 Identities=23% Similarity=0.382 Sum_probs=131.6
Q ss_pred ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCC
Q psy7300 65 LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPY 144 (986)
Q Consensus 65 ~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~ 144 (986)
-+.|..+.|.+.+|||||+||+|+|++|||+++|++.++++|-|.++.+||+|||++++.|+|++||+++++.+....|.
T Consensus 30 ~~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~ 109 (422)
T KOG2015|consen 30 PSEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPG 109 (422)
T ss_pred CCHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCC
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeecCCC---CHhhhccccEEEEecCCHHHHHHHHHHHHHc---C-------CcEEEeecccceEEEEeecCC
Q psy7300 145 VSTKAYTGEL---SEAFIKKFRVVVLTNSTYDEQLAISQITHAN---D-------IALIIADTRGLFAQVFCDFGN 207 (986)
Q Consensus 145 V~v~~~~~~~---~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~---~-------ip~I~~~~~G~~G~vf~d~g~ 207 (986)
+.|..+...+ +.+|+++|++||+..|+++.|.+||.+..+. | ||+|.+++.|+-|.+.+.+..
T Consensus 110 ~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg 185 (422)
T KOG2015|consen 110 CVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPG 185 (422)
T ss_pred cEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecC
Confidence 9998887655 6789999999999999999999999765432 3 799999999999998877654
No 83
>KOG2014|consensus
Probab=99.91 E-value=2.2e-24 Score=227.46 Aligned_cols=159 Identities=21% Similarity=0.427 Sum_probs=147.8
Q ss_pred ccccccccccCccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccC
Q psy7300 433 IAETDAIVNGSRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFL 512 (986)
Q Consensus 433 ~~~~~~~~~~~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqfl 512 (986)
++++++ .-||||||+||.++|++|+++||+|+|.+|+|.|++|||+++|| |++++.|.-.|....++-|||
T Consensus 6 lse~E~----alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV-----~~ltlLD~~~Vt~Ed~~~qFl 76 (331)
T KOG2014|consen 6 LSEQEI----ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGV-----GSLTLLDDRLVTEEDVGAQFL 76 (331)
T ss_pred hhHHHH----HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhccc-----ceeEEeeccccchhcCCceeE
Confidence 566666 68999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEE
Q psy7300 513 FRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLES 592 (986)
Q Consensus 513 f~~~diG~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~ 592 (986)
.+.+++|+.|+++..++++.+||.++|......+.+. +.+||.+||+||-.--+.+++..+|.+|++++++++.+
T Consensus 77 i~~~~vg~~raeas~erl~~LNPmV~v~~d~edl~ek-----~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~ 151 (331)
T KOG2014|consen 77 ISASSVGQTRAEASLERLQDLNPMVDVSVDKEDLSEK-----DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAG 151 (331)
T ss_pred EchhhhchHHHHHHHHHHHhcCCceEEEechhhhhhc-----chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEec
Confidence 9999999999999999999999999999988887653 36899999999987677888899999999999999999
Q ss_pred eecCCcceEEEEe
Q psy7300 593 GTLGTKGNSQVVV 605 (986)
Q Consensus 593 g~~G~~G~v~~~~ 605 (986)
+..|+.|++..-+
T Consensus 152 d~~g~~Gy~F~dL 164 (331)
T KOG2014|consen 152 DCFGLCGYAFADL 164 (331)
T ss_pred cccceeeeeeeeh
Confidence 9999999986543
No 84
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.90 E-value=9.4e-24 Score=247.20 Aligned_cols=177 Identities=21% Similarity=0.222 Sum_probs=150.1
Q ss_pred CccccccccccccCCCCCCCC---CCchhhhhhccccch-----hcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhC
Q psy7300 27 TTCETFNMESVANHQNGSSAT---AMDQDIDEGLYSRQL-----YVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSG 98 (986)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~y~Rqi-----~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~G 98 (986)
++.-+|+..+..++.+.+... .++..+.++--+-++ |+...-+.++|++++|||+|+||||+.+|++|+++|
T Consensus 282 pk~~GWErn~~GKl~pr~~dL~~~mdP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 282 PKAVGWERNANGKLQPISVDLSKEFDPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred cccccccccCCCCcCceEechhhhcCHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcC
Confidence 567889999888888753332 233333333333333 445566679999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCccCCCcccccCcCcc---CchHHHHHHHHHhhcCCCCEEEeecCCC-------C-------------
Q psy7300 99 VKSVTLHDTTATSLSDLSSQFYLSEKDV---GRNRAEVSHTNLSQLNPYVSTKAYTGEL-------S------------- 155 (986)
Q Consensus 99 Vg~itlvD~d~V~~sdl~rqf~~~~~di---Gk~Ka~a~~~~L~~lNp~V~v~~~~~~~-------~------------- 155 (986)
||+|||+|+|.|+.+||+||++++.+|+ |++||++++++|+++||+|+++.+...+ +
T Consensus 362 Vg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~ 441 (664)
T TIGR01381 362 VRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIAR 441 (664)
T ss_pred CCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHH
Confidence 9999999999999999999999999999 9999999999999999999999876552 2
Q ss_pred -HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEee
Q psy7300 156 -EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCD 204 (986)
Q Consensus 156 -~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d 204 (986)
.++++++|+|++|+|+.++|..++.+|..+++|+|++. .|+.||+..-
T Consensus 442 l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg~lvmr 490 (664)
T TIGR01381 442 LEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDSYVVMR 490 (664)
T ss_pred HHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccceEEEEE
Confidence 24678999999999999999999999999999999985 8999998764
No 85
>PRK06153 hypothetical protein; Provisional
Probab=99.90 E-value=8.5e-24 Score=235.77 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=119.5
Q ss_pred HHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCcccc-CcCCCCCCC--cHHHHHHHHH
Q psy7300 454 KNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQF-LFRPHDVQQ--PKSATAAKAI 530 (986)
Q Consensus 454 ~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqf-lf~~~diG~--~Ka~~a~~~l 530 (986)
...|++|++++|+||||||+||.++..||++|| |+|+|+|+|.|+.||||||+ +|+.+|+|+ +|++++++++
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-----geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl 242 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPV-----REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRY 242 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCC-----CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHH
Confidence 467999999999999999999999999999999 89999999999999999998 679999999 9999999999
Q ss_pred HhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeec
Q psy7300 531 KVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTL 595 (986)
Q Consensus 531 ~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~ 595 (986)
.++|| .|+++...+.+++ .+.+.++|+|++|+|+.++|..+++.|..+++|+|++|+.
T Consensus 243 ~~in~--~I~~~~~~I~~~n-----~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 243 SNMRR--GIVPHPEYIDEDN-----VDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HHhCC--eEEEEeecCCHHH-----HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 99998 4678888886433 2467899999999999999999999999999999999964
No 86
>KOG2016|consensus
Probab=99.89 E-value=2.3e-23 Score=228.50 Aligned_cols=161 Identities=19% Similarity=0.338 Sum_probs=146.0
Q ss_pred ccCccchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCC
Q psy7300 441 NGSRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ 520 (986)
Q Consensus 441 ~~~rydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 520 (986)
.+.|||||+|+||+.+|..|..++|+++|||++|||++|||++.|| |++||+|.-.|+.+++..+|+...+++|+
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gi-----gs~tvvd~~~v~~~d~g~nF~~~~~~~Gk 80 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGI-----GSFTVVDGSKVEQGDLGNNFFLDAKSIGK 80 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhccccc-----ccEEEEecceeeecchhhHHHHHHHhhch
Confidence 4589999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 521 PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 521 ~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
+||++..+.++++||+++-......-. ..-.-+..||.+|++|+.+-=+.+.-..+.++|+.+++|++.+-+.|+.|.
T Consensus 81 srA~a~~e~LqeLN~~V~~~~vee~p~--~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~ 158 (523)
T KOG2016|consen 81 SRAEATLEFLQELNPSVSGSFVEESPD--FLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGT 158 (523)
T ss_pred hHHHHHHHHHHHhChhhhcCccccChh--hhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEE
Confidence 999999999999999998766654422 222235799999999998877777778999999999999999999999999
Q ss_pred EEEEeCCC
Q psy7300 601 SQVVVPHL 608 (986)
Q Consensus 601 v~~~~p~~ 608 (986)
+++.+..+
T Consensus 159 iRI~ikEH 166 (523)
T KOG2016|consen 159 IRISIKEH 166 (523)
T ss_pred EEEEeeec
Confidence 99998764
No 87
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.89 E-value=8e-23 Score=221.58 Aligned_cols=129 Identities=23% Similarity=0.361 Sum_probs=119.2
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCc--cCchHHHHHHHHHhhcCCCCEEEeecCCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKD--VGRNRAEVSHTNLSQLNPYVSTKAYTGEL 154 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~d--iGk~Ka~a~~~~L~~lNp~V~v~~~~~~~ 154 (986)
+|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+||++++.+| +|++||++++++|+++||+|+++.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999876432
Q ss_pred -----------------C----HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecC
Q psy7300 155 -----------------S----EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFG 206 (986)
Q Consensus 155 -----------------~----~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g 206 (986)
+ +++++++|+|++|+|+.+.|+.++.+|+.+++|+|.+ ..|+.||+..-.|
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg 152 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHG 152 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeC
Confidence 1 3578999999999999999999999999999999984 7899999877654
No 88
>KOG2336|consensus
Probab=99.89 E-value=3.4e-23 Score=214.63 Aligned_cols=184 Identities=26% Similarity=0.496 Sum_probs=155.7
Q ss_pred Cccchhhhc--cC-HHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCC
Q psy7300 443 SRYEGQVAI--FG-KNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQ 519 (986)
Q Consensus 443 ~rydrqi~~--~G-~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 519 (986)
.-|+|.+++ .| .+..+||+...|.|||.||+|+-.+..|.++|| |++.++|.|.||..|+||-| |+++..|
T Consensus 60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGI-----GkLlLfDYDkVElANMNRLF-f~P~QaG 133 (422)
T KOG2336|consen 60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRLF-FQPDQAG 133 (422)
T ss_pred ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCc-----ceEEEeecchhhhhcccccc-cCccccc
Confidence 578888766 33 356799999999999999999999999999999 89999999999999999998 9999999
Q ss_pred CcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccc-----------cCCCEEEEcCCCHHHHHHHHHHHHHcCCc
Q psy7300 520 QPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFF-----------ESLDGIANALDNVEARIYMDRRCVYSRKP 588 (986)
Q Consensus 520 ~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~-----------~~~DvVi~a~Dn~~ar~~l~~~c~~~~~p 588 (986)
.+|+++|++.|..+||++.|+.|+.++..- +-| +.|. +..|+|+.|+||++||+.+|..|-+.+--
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTv--enF-d~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~ 210 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTV--ENF-DTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQT 210 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeee--hhH-HHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999888632 222 2222 34899999999999999999999999999
Q ss_pred EEEEeec--CCcceEEEEeCCCCccccCCCCC------CC---CCCCcccccCCCCcch
Q psy7300 589 LLESGTL--GTKGNSQVVVPHLTESYSSSQDP------PE---KSIPICTLKNFPNAIE 636 (986)
Q Consensus 589 li~~g~~--G~~G~v~~~~p~~t~cy~c~~~~------~~---~~~p~Ctl~~~P~~~~ 636 (986)
|+++|+. ...||+|.++|+.|.||.|.+.- .+ +--.+|. .+.|.++.
T Consensus 211 WmESGVSEnAVSGHIQ~i~PGetACFACaPPlVVAs~IDErTLKReGVCA-ASLPTTMg 268 (422)
T KOG2336|consen 211 WMESGVSENAVSGHIQLIVPGETACFACAPPLVVASGIDERTLKREGVCA-ASLPTTMG 268 (422)
T ss_pred HHHccCccccccceeEEecCCccceecccCceeeecCcchhhhhhcceee-ecCcchHH
Confidence 9999988 56799999999999999995421 11 3344564 46777543
No 89
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.89 E-value=1.7e-22 Score=207.29 Aligned_cols=126 Identities=25% Similarity=0.360 Sum_probs=116.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCCCH
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE 156 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~~~ 156 (986)
+|+|+|+||+|++++++|+++||++++|+|.|.|+.+||+||+|. .+|+|++||++++++|+++||+++++.+...+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 699999999999999999999999999999999999999999965 5899999999999999999999999998877754
Q ss_pred ----hhhccccEEEEecCCHHHHHHHHHHHHHc-CCcEEEeecccceEEEEe
Q psy7300 157 ----AFIKKFRVVVLTNSTYDEQLAISQITHAN-DIALIIADTRGLFAQVFC 203 (986)
Q Consensus 157 ----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~-~ip~I~~~~~G~~G~vf~ 203 (986)
++++++|+||+|.|+.+.+..+++.|.++ ++|||++...|.+|++..
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~ 131 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNN 131 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEE
Confidence 57899999999999999998888777766 999999999998888754
No 90
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.87 E-value=2e-22 Score=224.76 Aligned_cols=140 Identities=19% Similarity=0.224 Sum_probs=130.5
Q ss_pred hhccccchhc---cc-HHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchH
Q psy7300 55 EGLYSRQLYV---LG-HDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNR 130 (986)
Q Consensus 55 ~~~y~Rqi~l---~G-~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~K 130 (986)
-+||+||+.+ +| .++|++|++++|+ |||+|+.++..|+. |||+|+|+|+|.|+.+||+ ++++++|||++|
T Consensus 52 ~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K 125 (318)
T TIGR03603 52 LITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKD 125 (318)
T ss_pred HHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHH
Confidence 3799999998 56 5589999999999 99999999999999 9999999999999999999 999999999999
Q ss_pred HHHHHHHHhhcCCCCEEEeecCCCCHhhhccccEEEEecCCHHHHHH--HHHHHHHcCCcEEEeecccceEEEEeec
Q psy7300 131 AEVSHTNLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTNSTYDEQLA--ISQITHANDIALIIADTRGLFAQVFCDF 205 (986)
Q Consensus 131 a~a~~~~L~~lNp~V~v~~~~~~~~~~~l~~~dvVI~~~~~~~~~~~--i~~~c~~~~ip~I~~~~~G~~G~vf~d~ 205 (986)
|++++++|.++||.++++.. .++++++|+||+|+|++.++.. +|++|.++++|||++...|+.|++..-+
T Consensus 126 ~~~a~~~L~~lnp~v~i~~~-----~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~~~~ 197 (318)
T TIGR03603 126 IRDLTSNLDALELTKNVDEL-----KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFITCTL 197 (318)
T ss_pred HHHHHHHHHHhCCCCEEeeH-----HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEEEEe
Confidence 99999999999999999864 4678999999999999998865 9999999999999999999999987544
No 91
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.87 E-value=6e-22 Score=207.44 Aligned_cols=136 Identities=26% Similarity=0.416 Sum_probs=119.0
Q ss_pred ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCC
Q psy7300 65 LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPY 144 (986)
Q Consensus 65 ~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~ 144 (986)
.|.++|++|++++|+|+|+||+|+++|++|+++||++++|+|.|.|+++||+||+| ..+|+|++|+++++++|+++||+
T Consensus 11 ~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 11 HTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEINPY 89 (200)
T ss_pred cCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999986 55899999999999999999999
Q ss_pred CEEEeecCCCCHh----hhccccEEEEecCCHHHHHHHH-HHHHHcCCcEEEeecccceEEEE
Q psy7300 145 VSTKAYTGELSEA----FIKKFRVVVLTNSTYDEQLAIS-QITHANDIALIIADTRGLFAQVF 202 (986)
Q Consensus 145 V~v~~~~~~~~~~----~l~~~dvVI~~~~~~~~~~~i~-~~c~~~~ip~I~~~~~G~~G~vf 202 (986)
++++++...++++ +++++|+||+|.|+.+.+..++ .+|+.++.+++.+ +.|+.|+.+
T Consensus 90 ~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 90 TEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGLAGYDD 151 (200)
T ss_pred CEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-EeccccCCC
Confidence 9999988887643 5788999999999999887655 5556665555444 367777664
No 92
>KOG2018|consensus
Probab=99.83 E-value=1.3e-20 Score=198.79 Aligned_cols=148 Identities=25% Similarity=0.326 Sum_probs=136.5
Q ss_pred cchhhhccCHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHH
Q psy7300 445 YEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSA 524 (986)
Q Consensus 445 ydrqi~~~G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~ 524 (986)
..|++.+||+++|+||.++-|+||||||+||.++-.|+++|+ ++|.|||.|.|..|.||||......|||.||+.
T Consensus 57 LarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~-----qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~ 131 (430)
T KOG2018|consen 57 LARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGV-----QKIRIVDFDQVSLSSLNRHSCATLADVGTPKVM 131 (430)
T ss_pred HHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcC-----ceEEEechhhccHhhhhhhhhhhHhhcCCchHH
Confidence 447778999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 525 TAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 525 ~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
++++.++++.|.+.|+|...-.++++++ +-.+.+.|.|++|+||++++--+-++|..+++++|.+-..+.+..
T Consensus 132 clkkh~skiaPw~eIdar~~l~~~~s~e---dll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksD 204 (430)
T KOG2018|consen 132 CLKKHFSKIAPWCEIDARNMLWTSSSEE---DLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSD 204 (430)
T ss_pred HHHHHHHhhCccceecHHHhhcCCCchh---hhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCC
Confidence 9999999999999999999888876654 345677999999999999999999999999999999876666543
No 93
>PRK06153 hypothetical protein; Provisional
Probab=99.82 E-value=5e-20 Score=205.71 Aligned_cols=126 Identities=16% Similarity=0.142 Sum_probs=115.0
Q ss_pred HHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCccc-ccCcCccCc--hHHHHHHHHHhhcCC
Q psy7300 67 HDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQF-YLSEKDVGR--NRAEVSHTNLSQLNP 143 (986)
Q Consensus 67 ~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf-~~~~~diGk--~Ka~a~~~~L~~lNp 143 (986)
.+.|+||++++|+||||||+||.++..|+++||++|+|+|+|.|+++||+||+ +++.+|+|+ +||+++++++.++||
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence 36799999999999999999999999999999999999999999999999998 568899999 999999999999998
Q ss_pred CCEEEeecCCCCHh---hhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeec
Q psy7300 144 YVSTKAYTGELSEA---FIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADT 194 (986)
Q Consensus 144 ~V~v~~~~~~~~~~---~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~ 194 (986)
. |..+...++++ .+.++|+||+|.|+.+.|..|+++|.+++||||.++.
T Consensus 248 ~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 248 G--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred e--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeee
Confidence 5 55666666543 5789999999999999999999999999999999873
No 94
>KOG2012|consensus
Probab=99.81 E-value=2.3e-20 Score=217.37 Aligned_cols=154 Identities=23% Similarity=0.331 Sum_probs=143.9
Q ss_pred hhhhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCC-----CeEEEEeCCCCCccCCCcccccCcCcc
Q psy7300 52 DIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGV-----KSVTLHDTTATSLSDLSSQFYLSEKDV 126 (986)
Q Consensus 52 ~i~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GV-----g~itlvD~d~V~~sdl~rqf~~~~~di 126 (986)
..-..|||-||.++|..-|+||.+.++++||+|++|+|.+||++++|| |.|++.|.|.++.|||+|||+++..||
T Consensus 407 ~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dV 486 (1013)
T KOG2012|consen 407 QPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDV 486 (1013)
T ss_pred ccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeecccccc
Confidence 344579999999999999999999999999999999999999999999 469999999999999999999999999
Q ss_pred CchHHHHHHHHHhhcCCCCEEEeecCCC--------CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccce
Q psy7300 127 GRNRAEVSHTNLSQLNPYVSTKAYTGEL--------SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLF 198 (986)
Q Consensus 127 Gk~Ka~a~~~~L~~lNp~V~v~~~~~~~--------~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~ 198 (986)
|++|+++++.....+||+++|.++...+ +++|+.+.|+|..+.|+.+.|..+..-|.-+.+|++.+++.|.-
T Consensus 487 gk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTK 566 (1013)
T KOG2012|consen 487 GKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTK 566 (1013)
T ss_pred CchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCc
Confidence 9999999999999999999999987654 56799999999999999999999999999999999999999999
Q ss_pred EEEEeec
Q psy7300 199 AQVFCDF 205 (986)
Q Consensus 199 G~vf~d~ 205 (986)
|..-+-.
T Consensus 567 GntQVvv 573 (1013)
T KOG2012|consen 567 GNTQVVV 573 (1013)
T ss_pred cceeEEe
Confidence 9765544
No 95
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.80 E-value=1.9e-20 Score=160.51 Aligned_cols=61 Identities=56% Similarity=0.868 Sum_probs=50.9
Q ss_pred eecccCCCchhhHHHHHHhhhhhhccCCCCCChhhHhhhhCCcccccchhhhHHhhhhhhhhc
Q psy7300 842 EFEKDDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVSKKKI 904 (986)
Q Consensus 842 ~FeKDDd~n~hidFi~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAiaTTtA~VaGl~~lEl~ 904 (986)
+|||||+. |++||+|+|||||++||||+.|++++++++|+||||++||||+|||++|+|++
T Consensus 1 ~Fd~dd~~--h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~ 61 (67)
T PF02134_consen 1 EFDKDDPL--HLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELY 61 (67)
T ss_dssp ---TTSHH--HHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHH
T ss_pred CCCCCcHH--HHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHH
Confidence 49999985 99999999999999999999999999999999999999999999999999999
No 96
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.78 E-value=8.8e-19 Score=187.33 Aligned_cols=129 Identities=20% Similarity=0.189 Sum_probs=113.3
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCC-----C-----eEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGV-----K-----SVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN 142 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GV-----g-----~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN 142 (986)
-+.++|+|||+||+||+++++|+++|+ | +|+|+|+|.|+++||+||+| .+.|||++||+++++++...|
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf-~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAF-YPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccC-ChhHCCcHHHHHHHHHHHhcc
Confidence 368999999999999999999999973 4 99999999999999999965 458999999999999999988
Q ss_pred CCCEEEeecCCCCH-hhhccccEEEEecCCHHHHHHHHHHHHH--c-CCcEEEeecccceEEEEe
Q psy7300 143 PYVSTKAYTGELSE-AFIKKFRVVVLTNSTYDEQLAISQITHA--N-DIALIIADTRGLFAQVFC 203 (986)
Q Consensus 143 p~V~v~~~~~~~~~-~~l~~~dvVI~~~~~~~~~~~i~~~c~~--~-~ip~I~~~~~G~~G~vf~ 203 (986)
.++++++...+++ +++.++|+||+|.|+.+.|..|++.|.+ . ++||+.+++.+..|++.+
T Consensus 88 -~~~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~ 151 (244)
T TIGR03736 88 -GTDWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVIL 151 (244)
T ss_pred -CceEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEE
Confidence 8899998877653 4567899999999999999999999988 2 478999988887777643
No 97
>KOG2336|consensus
Probab=99.69 E-value=5.9e-17 Score=168.59 Aligned_cols=152 Identities=19% Similarity=0.383 Sum_probs=132.2
Q ss_pred Cchhhhhhccccchhc--cc-HHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCc
Q psy7300 49 MDQDIDEGLYSRQLYV--LG-HDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKD 125 (986)
Q Consensus 49 ~~~~i~~~~y~Rqi~l--~G-~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~d 125 (986)
+.+.+|.+-|||-+.| +| .+..+|++...|.|+|.||+||-+|..|.|+|||++.|+|.|.|+..|++|-|| +++.
T Consensus 53 SsEVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLFf-~P~Q 131 (422)
T KOG2336|consen 53 SSEVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFF-QPDQ 131 (422)
T ss_pred hhhHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccccc-Cccc
Confidence 5567888999999877 56 577899999999999999999999999999999999999999999999999766 5588
Q ss_pred cCchHHHHHHHHHhhcCCCCEEEeecCCCC-----Hhhh-----------ccccEEEEecCCHHHHHHHHHHHHHcCCcE
Q psy7300 126 VGRNRAEVSHTNLSQLNPYVSTKAYTGELS-----EAFI-----------KKFRVVVLTNSTYDEQLAISQITHANDIAL 189 (986)
Q Consensus 126 iGk~Ka~a~~~~L~~lNp~V~v~~~~~~~~-----~~~l-----------~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~ 189 (986)
.|.+|++++.+.|.++||+|.++++.-.++ +.|. +..|+|+.|.|+++.|..+|..|.+.+--|
T Consensus 132 aGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~W 211 (422)
T KOG2336|consen 132 AGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTW 211 (422)
T ss_pred ccchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999987763 1121 357999999999999999999999998888
Q ss_pred EEeeccc--ceEEE
Q psy7300 190 IIADTRG--LFAQV 201 (986)
Q Consensus 190 I~~~~~G--~~G~v 201 (986)
+-+++.. ..|.+
T Consensus 212 mESGVSEnAVSGHI 225 (422)
T KOG2336|consen 212 MESGVSENAVSGHI 225 (422)
T ss_pred HHccCcccccccee
Confidence 8776553 34444
No 98
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.54 E-value=6.6e-15 Score=171.61 Aligned_cols=146 Identities=17% Similarity=0.212 Sum_probs=124.6
Q ss_pred Cccchhhhcc------CHHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCC
Q psy7300 443 SRYEGQVAIF------GKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPH 516 (986)
Q Consensus 443 ~rydrqi~~~------G~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~ 516 (986)
+||..||.+| |....++.+++||+|+|.||+|+.++.+|+.+|+ ++|+.+|.|.+ .|||||
T Consensus 104 ERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-----~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 104 DRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-----PRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred HHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-----CcEEEEecccc-chhhhH-------
Confidence 8999999885 6667777799999999999999999999999999 79999999999 999999
Q ss_pred CCCCcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCH--HHHHHHHHHHHHcC---CcEEE
Q psy7300 517 DVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNV--EARIYMDRRCVYSR---KPLLE 591 (986)
Q Consensus 517 diG~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~--~ar~~l~~~c~~~~---~pli~ 591 (986)
||+. ++.|++ +||+++|+.++..- .++. .+.++++|+|+...|+. .--+++|+.|++.| +|++-
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~---~~dl--~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAE---DQHL--HEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCc---chhH--HHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 7776 665555 99999999997632 2222 46779999999999964 44469999999999 77888
Q ss_pred EeecCCcceEEEEeCCCCccccC
Q psy7300 592 SGTLGTKGNSQVVVPHLTESYSS 614 (986)
Q Consensus 592 ~g~~G~~G~v~~~~p~~t~cy~c 614 (986)
+|..+..|-+.. |+.|+|+.|
T Consensus 240 ~G~~~liGPlft--PgkTGCWeC 260 (637)
T TIGR03693 240 LKQVGLAGPVFQ--QHGDECFEA 260 (637)
T ss_pred cccceeecceEC--CCCCcHHHH
Confidence 888888888755 999999999
No 99
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.52 E-value=2.2e-15 Score=118.03 Aligned_cols=45 Identities=56% Similarity=1.128 Sum_probs=40.1
Q ss_pred CCCccccCCCCCCCCCCCcccccCCCCcchhhHHHHHHHhhhHhh
Q psy7300 607 HLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFR 651 (986)
Q Consensus 607 ~~t~cy~c~~~~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~F~ 651 (986)
++|+||+|+.+++++++|+|||++||+.++|||+|||++|+++|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence 479999999999999999999999999999999999999999996
No 100
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.50 E-value=6.3e-15 Score=142.22 Aligned_cols=61 Identities=44% Similarity=0.829 Sum_probs=49.7
Q ss_pred cccce--eeccccccc--CCCCCccccCceeeeeeEEEeCCCCCHHHHHHHHHHHcCCeEEEEEe
Q psy7300 925 VETTI--VAVVAYCWS--KGAPKLKYYDVEWTLWDRFEINQEMTLKQFLDYFQNEHKLEITILLL 985 (986)
Q Consensus 925 ~rn~f--la~p~~~~~--~~~~~~~~~~~~~t~wd~~~~~~~~tl~~~~~~~~~~~~~~~~~~~~ 985 (986)
|||+| ||+|+|.+| .+|++.++.+.+||+||||+|+++|||++|+++|+++||++|+||++
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~ 65 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQ 65 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS-EEEEEEE
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhCceEEEEEe
Confidence 89999 999999999 67777788888999999999999999999999999999999999986
No 101
>KOG2337|consensus
Probab=99.46 E-value=1.6e-13 Score=153.90 Aligned_cols=181 Identities=19% Similarity=0.262 Sum_probs=144.1
Q ss_pred cCCccccccccccccCCCCCCCCC---Cch-----hhhhhccccchhcccHHHHHHhhcCcEEEEcCChhHHHHHHHHHH
Q psy7300 25 NNTTCETFNMESVANHQNGSSATA---MDQ-----DIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVIL 96 (986)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~i~~~~y~Rqi~l~G~~~q~kL~~s~VlIiG~gglGseiaknLvl 96 (986)
...+.-+|+........|.|.... ++. .+|-++--.-.|+...-..+++.+.++|+.|+|.+|+.+|+||+-
T Consensus 282 ~~~k~VGWErN~~Gkl~PR~V~Ls~~mDP~~LaessVdLNLkLMkWRlvPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~ 361 (669)
T KOG2337|consen 282 AVPKAVGWERNKNGKLGPRMVDLSDSMDPKKLAESSVDLNLKLMKWRLVPDLNLDIISQTKCLLLGAGTLGCNVARNLLG 361 (669)
T ss_pred CCccccceeeccCCCcCceEEehhhccChHHHhhhhcccchheeeeeecCccchhhhhcceeEEecCcccchHHHHHHHh
Confidence 345667888888888888654332 222 233333333345666777899999999999999999999999999
Q ss_pred hCCCeEEEEeCCCCCccCCCcccccCcCcc---CchHHHHHHHHHhhcCCCCEEEeecCCC-------C-----------
Q psy7300 97 SGVKSVTLHDTTATSLSDLSSQFYLSEKDV---GRNRAEVSHTNLSQLNPYVSTKAYTGEL-------S----------- 155 (986)
Q Consensus 97 ~GVg~itlvD~d~V~~sdl~rqf~~~~~di---Gk~Ka~a~~~~L~~lNp~V~v~~~~~~~-------~----------- 155 (986)
.||++||++|+..|+.+|-.||-+++-+|. |++||++++++|++++|.++-..+.-.+ .
T Consensus 362 WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~ 441 (669)
T KOG2337|consen 362 WGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDL 441 (669)
T ss_pred hccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccccccceEEeccCCCCccchhhHHHHHHHH
Confidence 999999999999999999999999999887 5999999999999999998777665332 1
Q ss_pred ---HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEEeecC
Q psy7300 156 ---EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFG 206 (986)
Q Consensus 156 ---~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf~d~g 206 (986)
+.+++..|+|++.+|+.+.|+.-.-+|..++.-+|.+. .|+..|+-.-.|
T Consensus 442 ~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDsylVMRHG 494 (669)
T KOG2337|consen 442 KRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDSYLVMRHG 494 (669)
T ss_pred HHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-cccceeEEEecC
Confidence 23678999999999999999988888888877777765 788777655444
No 102
>KOG2337|consensus
Probab=99.36 E-value=2.4e-12 Score=144.59 Aligned_cols=134 Identities=25% Similarity=0.288 Sum_probs=113.9
Q ss_pred HHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCC---CCcHHHHHHHHHH
Q psy7300 455 NFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDV---QQPKSATAAKAIK 531 (986)
Q Consensus 455 ~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~di---G~~Ka~~a~~~l~ 531 (986)
-..+++.+.|+++.|||.+||.+|++|.-=|| ++||.+|+.+|..||--||.||.-+|- |++||++|+++++
T Consensus 333 LnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk 407 (669)
T KOG2337|consen 333 LNLDIISQTKCLLLGAGTLGCNVARNLLGWGV-----RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLK 407 (669)
T ss_pred cchhhhhcceeEEecCcccchHHHHHHHhhcc-----ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHH
Confidence 34589999999999999999999999998888 899999999999999999999999885 5999999999999
Q ss_pred hhCCCceEEEEEcccC-------Cc----ccccc--ccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7300 532 VMNPNVNITYHENRVG-------PE----TEKVY--DDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESG 593 (986)
Q Consensus 532 ~~np~~~i~~~~~~v~-------~~----~~~~~--~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g 593 (986)
+++|.+.-+.+...+- +. +...+ -+.+++..|+|+-.+|+.++|..-.-+|...++-+|++.
T Consensus 408 ~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA 482 (669)
T KOG2337|consen 408 EIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA 482 (669)
T ss_pred HhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee
Confidence 9999998776654432 11 11111 145688999999999999999888888888889888885
No 103
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.20 E-value=6.1e-11 Score=138.88 Aligned_cols=135 Identities=17% Similarity=0.180 Sum_probs=112.3
Q ss_pred hhccccchhc------ccHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCc
Q psy7300 55 EGLYSRQLYV------LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGR 128 (986)
Q Consensus 55 ~~~y~Rqi~l------~G~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk 128 (986)
.+||..||.. .|.+..++.++++|+|+|+||+|+.++.+|+.+|+++|..+|.|.+ .+|++| ||+
T Consensus 103 lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgE 173 (637)
T TIGR03693 103 LDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHE 173 (637)
T ss_pred HHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHH
Confidence 4899999987 4567778889999999999999999999999999999999999999 999999 776
Q ss_pred hHHHHHHHHHhhcCCCCEEEeecCCCCH---hhhccccEEEEecC--CHHHHHHHHHHHHHcC---CcEEEeecccceEE
Q psy7300 129 NRAEVSHTNLSQLNPYVSTKAYTGELSE---AFIKKFRVVVLTNS--TYDEQLAISQITHAND---IALIIADTRGLFAQ 200 (986)
Q Consensus 129 ~Ka~a~~~~L~~lNp~V~v~~~~~~~~~---~~l~~~dvVI~~~~--~~~~~~~i~~~c~~~~---ip~I~~~~~G~~G~ 200 (986)
. ++.+++ .||.|.|+.++...+. +.++.+|+||+..| ......++|+.|.+.| +|++.++..++.|-
T Consensus 174 l-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGP 248 (637)
T TIGR03693 174 L-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGP 248 (637)
T ss_pred H-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecc
Confidence 6 555444 8999999988754333 56799999999988 4456779999999999 66667777777666
Q ss_pred EEe
Q psy7300 201 VFC 203 (986)
Q Consensus 201 vf~ 203 (986)
+|.
T Consensus 249 lft 251 (637)
T TIGR03693 249 VFQ 251 (637)
T ss_pred eEC
Confidence 543
No 104
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=98.45 E-value=3e-08 Score=85.38 Aligned_cols=50 Identities=42% Similarity=0.865 Sum_probs=38.4
Q ss_pred ccCCCCCcchhhHhhhHHHHHHHhCCCCCCcHHHHHHHHhccccCcccCCCC
Q psy7300 747 EFDVTDPLHLQYIYTGANLKAELYGIPQVRNLDAIAQMVKQVVVPEFTPKSG 798 (986)
Q Consensus 747 ~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~d~~~~~~~~~~~~~~~f~~~~~ 798 (986)
+||++|++|++||.++|+|||++|||+ ..|...+.+++ +..+|+|.|+.+
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~-~~~~~~~~~i~-~~iIP~~~~t~~ 50 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIP-PLDREEIKKIA-GNIIPAFAPTNA 50 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT----S-HHHHHHHH-TTEE-B-HHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCC-cccHHHHHHHh-cCcCCCcCCchh
Confidence 599999999999999999999999999 68999999999 778999998765
No 105
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.27 E-value=4.4e-06 Score=81.88 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=98.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHH---HhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVI---LSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLv---l~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
-...|.++|||-+|.-+|-+|. +-|+.+|.++|...|++.|+--- .--.-+|.+|++-+ ++|....+.-.|+++
T Consensus 17 PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr--r~Ga~~GEyKv~Fi-~rl~~~~f~r~V~a~ 93 (217)
T COG4015 17 PRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR--RLGAKVGEYKVDFI-KRLGRVHFGRRVEAF 93 (217)
T ss_pred CCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH--HhCCCcchhHHHHH-HHhCcCCCCceeecc
Confidence 3457999999999999999987 68999999999999999997522 12245899999865 467777888899999
Q ss_pred cCCCCHhhhc--cccEEEEec---CCHHHHHHHHHHHHHcCCcEEEeecccceEE
Q psy7300 151 TGELSEAFIK--KFRVVVLTN---STYDEQLAISQITHANDIALIIADTRGLFAQ 200 (986)
Q Consensus 151 ~~~~~~~~l~--~~dvVI~~~---~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~ 200 (986)
.+.++.+.++ .-|+||.|. +..+.-..|.++|++.|+.-|++ .|.||+
T Consensus 94 pE~it~dNlhll~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT--~GVFGi 146 (217)
T COG4015 94 PENITKDNLHLLKGDVVVICIAGGDTIPVTAAIINYAKERGIKTIST--NGVFGI 146 (217)
T ss_pred cccccccchhhhcCCEEEEEecCCCcchhHHHHHHHHHHcCceEeec--Cceeec
Confidence 9988766432 338888775 57788889999999999987765 477764
No 106
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.90 E-value=2.1e-05 Score=82.32 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=70.2
Q ss_pred cCHHHHHHHhcCcEEEEecChhhHH-HHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHH
Q psy7300 452 FGKNFQEKLGKLKYFVVGAGAIGCE-LLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAI 530 (986)
Q Consensus 452 ~G~~~q~~L~~~~VlvvGaGgiG~e-~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l 530 (986)
=+...+++|++++|.|+|.|+.|++ ++..|+.+|++ .+.
T Consensus 95 ~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~-----~~~----------------------------------- 134 (193)
T TIGR03882 95 DPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIR-----IAP----------------------------------- 134 (193)
T ss_pred CHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCC-----ccC-----------------------------------
Confidence 3567889999999999999999999 99999999993 332
Q ss_pred HhhCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHH-HHHHHHHHcCCcEEEEeecCCcceEEEE-eCCC
Q psy7300 531 KVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARI-YMDRRCVYSRKPLLESGTLGTKGNSQVV-VPHL 608 (986)
Q Consensus 531 ~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~-~l~~~c~~~~~pli~~g~~G~~G~v~~~-~p~~ 608 (986)
.+ ...++|+.. |-...+. .+|+.....+.|++-....|..+-+-++ .|+.
T Consensus 135 ----------------~~-----------a~l~vVl~~-Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~ 186 (193)
T TIGR03882 135 ----------------SE-----------ADLTVVLTD-DYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGK 186 (193)
T ss_pred ----------------CC-----------CCEEEEEeC-CCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCC
Confidence 00 012222222 2223333 5777888889999999888888777775 6999
Q ss_pred CccccC
Q psy7300 609 TESYSS 614 (986)
Q Consensus 609 t~cy~c 614 (986)
|+|+.|
T Consensus 187 ~~c~~c 192 (193)
T TIGR03882 187 TGCWHC 192 (193)
T ss_pred Cccccc
Confidence 999998
No 107
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.64 E-value=0.00075 Score=71.34 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=71.0
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
.|++.+|+|||.|.+|...++.|...| .++++++++.. +.+.++.+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~-------------------------~~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT-------------------------ENLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 478999999999999999999999999 68999975321 0111111112344445
Q ss_pred CCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
..+.+..+.++|+||.|+++.+.-..+...|+ .++++-.++.-.
T Consensus 61 ~~~~~~~l~~adlViaaT~d~elN~~i~~~a~-~~~lvn~~d~~~ 104 (202)
T PRK06718 61 KEFEPSDIVDAFLVIAATNDPRVNEQVKEDLP-ENALFNVITDAE 104 (202)
T ss_pred cCCChhhcCCceEEEEcCCCHHHHHHHHHHHH-hCCcEEECCCCc
Confidence 55666778899999999999888889999994 466655554333
No 108
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.57 E-value=0.0012 Score=69.96 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=79.7
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
|++.+|+|||.|.+|..-++.|...|. .+|+++++.- + .+ +.|.+. -.++.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~------------------~---~l-~~l~~~---~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE------------------S---EL-TLLAEQ---GGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC------------------H---HH-HHHHHc---CCEEEEeC
Confidence 678899999999999999999999996 8999997532 0 01 112222 24666666
Q ss_pred CCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEEEE
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVF 202 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~vf 202 (986)
....+.+.++++||.++++.+....+...|++.++++-.++--....++|
T Consensus 61 ~~~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~ 110 (205)
T TIGR01470 61 CFDADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIF 110 (205)
T ss_pred CCCHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEE
Confidence 67777789999999999988888899999999999987776555544443
No 109
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00074 Score=77.44 Aligned_cols=101 Identities=15% Similarity=0.249 Sum_probs=72.9
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
.+|+|+|||++|+.++.+||+.|. ++|+|.|... . .++++...... ++++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdRs~---------------------~--~~~~i~~~~~~-~v~~~ 52 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADRSK---------------------E--KCARIAELIGG-KVEAL 52 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeCCH---------------------H--HHHHHHhhccc-cceeE
Confidence 589999999999999999999997 6999987321 1 12222222111 66666
Q ss_pred EcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecC
Q psy7300 543 ENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLG 596 (986)
Q Consensus 543 ~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G 596 (986)
.-++..... . .+.++++|+||+|+.-.-.+ .+-+.|.+.|+++++.....
T Consensus 53 ~vD~~d~~a-l--~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 53 QVDAADVDA-L--VALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred EecccChHH-H--HHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 666543221 1 36788999999999877665 67789999999999987543
No 110
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.33 E-value=0.0014 Score=69.33 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=69.4
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
.|.+++|+|||+|.+|...++.|...|. +++|++.+. .+ .+..+.+.-.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga------~V~VIs~~~------~~-------------------~l~~l~~~~~ 55 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA------HIVVISPEL------TE-------------------NLVKLVEEGK 55 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEcCCC------CH-------------------HHHHHHhCCC
Confidence 4789999999999999999999999986 999997531 11 1111111122
Q ss_pred EEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcceE
Q psy7300 539 ITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNS 601 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~v 601 (986)
+..... .|....+.++|+||.|+|+.+.-..+...| ..+++ ++.....-.|.+
T Consensus 56 i~~~~~--------~~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~l-vn~~d~~~~~~f 108 (202)
T PRK06718 56 IRWKQK--------EFEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENAL-FNVITDAESGNV 108 (202)
T ss_pred EEEEec--------CCChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCc-EEECCCCccCeE
Confidence 333222 233456789999999999999999999999 55664 454433333443
No 111
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.31 E-value=0.00073 Score=66.71 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=58.5
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 71 RRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 71 ~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
..+++++|+|+|+||.|..+++.|...|+++|+|+..+ ..|++.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Ccccccee
Confidence 36899999999999999999999999999999999842 24777777777 33334433
Q ss_pred cCCCCHhhhccccEEEEecCC
Q psy7300 151 TGELSEAFIKKFRVVVLTNST 171 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~~ 171 (986)
.-.--.+.+.++|+||.|+..
T Consensus 65 ~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 65 PLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp EGGGHCHHHHTESEEEE-SST
T ss_pred eHHHHHHHHhhCCeEEEecCC
Confidence 211112567899999999864
No 112
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.22 E-value=0.0062 Score=61.78 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=69.2
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
.|++.+|+|+|.|.+|...++.|...|. .+++++++... .+.++. .+....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l~---~i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKELP---YITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhcc---CcEEEe
Confidence 5789999999999999999999999997 89999755321 112221 233445
Q ss_pred CCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEee
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIAD 193 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~ 193 (986)
..+.++.+.++|+||.++++.+....+...|+++ +++-.++
T Consensus 61 ~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~-~~vn~~d 101 (157)
T PRK06719 61 KTFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF-QWVNVVS 101 (157)
T ss_pred cccChhcCCCceEEEECCCCHHHHHHHHHHHHHC-CcEEECC
Confidence 5666777889999999999988888888999874 4444443
No 113
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.22 E-value=0.0012 Score=62.11 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=63.7
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
.|++++|+|||.|.+|..-++.|..+|. +++|+..+. +... ..++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA------~v~vis~~~-~~~~----------------------------~~i~ 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA------KVTVISPEI-EFSE----------------------------GLIQ 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB------EEEEEESSE-HHHH----------------------------TSCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECCch-hhhh----------------------------hHHH
Confidence 4789999999999999999999999996 999998876 1000 1122
Q ss_pred EEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEE
Q psy7300 539 ITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLES 592 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~ 592 (986)
..... |. ..+.++++|+.|+|+.+....+-+.|+.+++|+-.+
T Consensus 49 --~~~~~--------~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 49 --LIRRE--------FE-EDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp --EEESS---------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred --HHhhh--------HH-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 22222 22 346889999999999999999999999999976544
No 114
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.20 E-value=0.00099 Score=74.20 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=58.6
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
+..++|+|+|+||+|..++..|+..|+ ++|+|+|.+. .|++.+++.+...+|.+.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~~-------------------~ka~~la~~l~~~~~~~~~ 180 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVDP-------------------ARAAALADELNARFPAARA 180 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCCH-------------------HHHHHHHHHHHhhCCCeEE
Confidence 456899999999999999999999999 7999998652 6888888888777776544
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcC
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANAL 569 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~ 569 (986)
..... + .+.+.++|+||+|+
T Consensus 181 ~~~~~-~---------~~~~~~aDiVInaT 200 (284)
T PRK12549 181 TAGSD-L---------AAALAAADGLVHAT 200 (284)
T ss_pred Eeccc-h---------HhhhCCCCEEEECC
Confidence 33211 0 12347799999995
No 115
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0015 Score=75.07 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=70.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC-
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL- 154 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~- 154 (986)
.+|+|+|+|++|+.+|.+|+..|.+.|++.|... ..++++.+.... ++++..-+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccc-cceeEEeccc
Confidence 5899999999999999999999999999999532 112233333211 444443333
Q ss_pred ----CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 155 ----SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 155 ----~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
..++++++|+||.|....-. ..+-+.|-+.|++++.+....
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~-~~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVD-LTILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhh-HHHHHHHHHhCCCEEEcccCC
Confidence 24678999999999866443 378899999999999988665
No 116
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.19 E-value=0.0012 Score=73.39 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=61.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
++.++|+|+|+||+|..++..|+..|+++|+|+|.+ ..|++.+++.+.+..+.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 566799999999999999999999999999999865 258899999988877765553322
Q ss_pred CCCHhhhccccEEEEecC
Q psy7300 153 ELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~ 170 (986)
.+ .+.+.++|+||.|+.
T Consensus 185 ~~-~~~~~~aDiVInaTp 201 (284)
T PRK12549 185 DL-AAALAAADGLVHATP 201 (284)
T ss_pred ch-HhhhCCCCEEEECCc
Confidence 11 234578899998873
No 117
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.19 E-value=0.001 Score=65.63 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=57.0
Q ss_pred HHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCc
Q psy7300 458 EKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNV 537 (986)
Q Consensus 458 ~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~ 537 (986)
..|.+++|+|+|+||.|..+++.|+..|+ .+|+|+. |.. .|++.+++.+ +..
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~n----------Rt~---------~ra~~l~~~~----~~~ 59 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGA-----KEITIVN----------RTP---------ERAEALAEEF----GGV 59 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEE----------SSH---------HHHHHHHHHH----TGC
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEE----------CCH---------HHHHHHHHHc----Ccc
Confidence 36899999999999999999999999999 6899986 322 4555555555 444
Q ss_pred eEEEEEcccCCccccccccccccCCCEEEEcCCCH
Q psy7300 538 NITYHENRVGPETEKVYDDLFFESLDGIANALDNV 572 (986)
Q Consensus 538 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~ 572 (986)
.+...... +. .+.+.++|+||+|+...
T Consensus 60 ~~~~~~~~------~~--~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 60 NIEAIPLE------DL--EEALQEADIVINATPSG 86 (135)
T ss_dssp SEEEEEGG------GH--CHHHHTESEEEE-SSTT
T ss_pred ccceeeHH------HH--HHHHhhCCeEEEecCCC
Confidence 45554332 11 24578999999998754
No 118
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.19 E-value=0.00089 Score=62.88 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=66.4
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
.|++.+|+|||.|.+|..-++.|..+| .+++++.++. . .+. ..++ ...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~---------------------~~~-------~~i~--~~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-E---------------------FSE-------GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-H---------------------HHH-------TSCE--EEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-h---------------------hhh-------hHHH--HHh
Confidence 478999999999999999999999999 6999998764 0 000 1222 223
Q ss_pred CCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecc
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTR 195 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~ 195 (986)
..+. +.++++++|+.++++......+-..|+++++|+-.++.-
T Consensus 52 ~~~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p 94 (103)
T PF13241_consen 52 REFE-EDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDP 94 (103)
T ss_dssp SS-G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-C
T ss_pred hhHH-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCc
Confidence 3343 557889999999999898899999999999988776643
No 119
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.14 E-value=0.0077 Score=64.34 Aligned_cols=100 Identities=18% Similarity=0.156 Sum_probs=77.5
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
++++.+|||||.|.+|..=++.|..+|. +||++-++... .|+++-..-.++...
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~-------------------------el~~l~~~~~i~~~~ 75 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSK-------------------------EFLDLKKYGNLKLIK 75 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCH-------------------------HHHHHHhCCCEEEEe
Confidence 5668899999999999999999999995 79999876421 111111122356666
Q ss_pred CCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccc
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGL 197 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~ 197 (986)
....++.+.++++||.|+++.+.-.++...|++.++++..++--..
T Consensus 76 r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~ 121 (223)
T PRK05562 76 GNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKK 121 (223)
T ss_pred CCCChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCccc
Confidence 7777788899999999999999999999999999998887765443
No 120
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.03 E-value=0.005 Score=62.43 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=62.9
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
.|++++|+|||.|.+|...++.|...|. +++||+++..+. +.++ +.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga------~V~VIsp~~~~~-------------------------l~~l-~~-- 55 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA------FVTVVSPEICKE-------------------------MKEL-PY-- 55 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCccCHH-------------------------HHhc-cC--
Confidence 5789999999999999999999999987 999997663211 0111 11
Q ss_pred EEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHc
Q psy7300 539 ITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYS 585 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~ 585 (986)
++.... .|.+..+.++|+|+.|+|+.+....+...|...
T Consensus 56 i~~~~~--------~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 56 ITWKQK--------TFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred cEEEec--------ccChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 222222 233455789999999999999888888888764
No 121
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.93 E-value=0.0052 Score=65.11 Aligned_cols=95 Identities=18% Similarity=0.127 Sum_probs=71.0
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
|.+++|+|||.|.+|..-++.|...|. +++|++++.- ..+.+ +.+. -+|
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga------~VtVvsp~~~---------------------~~l~~-l~~~---~~i 55 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA------QLRVIAEELE---------------------SELTL-LAEQ---GGI 55 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC------EEEEEcCCCC---------------------HHHHH-HHHc---CCE
Confidence 678999999999999999999999987 9999987531 00111 1111 145
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESG 593 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g 593 (986)
+.+.... ....+.++++|+.|+|+.+....+-..|...++|+-.++
T Consensus 56 ~~~~~~~--------~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 56 TWLARCF--------DADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred EEEeCCC--------CHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 5444433 234578999999999999888899999999999885554
No 122
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.71 E-value=0.0079 Score=64.23 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=71.7
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
++++.+|+|||.|.+|..=++.|...|. +||||-++.-+. +.+.. -++.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA------~VtVVap~i~~e---------------------l~~l~--~~~~-- 70 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC------YVYILSKKFSKE---------------------FLDLK--KYGN-- 70 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCCCHH---------------------HHHHH--hCCC--
Confidence 4578899999999999999999999987 999997763110 01111 1223
Q ss_pred EEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEee
Q psy7300 539 ITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGT 594 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~ 594 (986)
|+.+...+ .+..+.++++|+.|+|+.+.-..+...|...++++..+.-
T Consensus 71 i~~~~r~~--------~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 71 LKLIKGNY--------DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEEEeCCC--------ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 44444433 3455789999999999999999999999999998776543
No 123
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.51 E-value=0.0072 Score=70.31 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=64.9
Q ss_pred EEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEEc
Q psy7300 465 YFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHEN 544 (986)
Q Consensus 465 VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~~ 544 (986)
|+|+|+|.+|..+++.|++.+-. .++++.|.+. .|++.+++.+ ...++.....
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~----~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~ 53 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF----EEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQV 53 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-----EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC----CcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEE
Confidence 78999999999999999987641 3889988654 2222222222 3346777776
Q ss_pred ccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEE
Q psy7300 545 RVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLES 592 (986)
Q Consensus 545 ~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~ 592 (986)
++.+... . .++++++|+||+|+... ....+-+.|.+.|+++|+.
T Consensus 54 d~~~~~~-l--~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 54 DVNDPES-L--AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp -TTTHHH-H--HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred ecCCHHH-H--HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 6654322 2 57899999999999876 4568899999999999993
No 124
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=96.31 E-value=0.017 Score=57.27 Aligned_cols=119 Identities=10% Similarity=0.125 Sum_probs=88.8
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
-.|.++|||-+|--++-+|... .-|...+|.++|+..|+..++--- ---.-+|.+|++.+++ +-+-.|.-.|+++
T Consensus 19 GeV~l~G~GRLG~Rval~Lle~--HRGGperi~v~Dgqrve~dDiihr--r~Ga~~GEyKv~Fi~r-l~~~~f~r~V~a~ 93 (217)
T COG4015 19 GEVSLIGCGRLGVRVALDLLEV--HRGGPERIYVFDGQRVEEDDIIHR--RLGAKVGEYKVDFIKR-LGRVHFGRRVEAF 93 (217)
T ss_pred ceEEEEeccchhHHHHHHHHHH--hcCCCeEEEEecCcccCchhhHHH--HhCCCcchhHHHHHHH-hCcCCCCceeecc
Confidence 4599999999999999998754 223337999999999999987421 1235789999997654 4445566689999
Q ss_pred EcccCCccccccccccccCCCEEEEc---CCCHHHHHHHHHHHHHcCCcEEEE
Q psy7300 543 ENRVGPETEKVYDDLFFESLDGIANA---LDNVEARIYMDRRCVYSRKPLLES 592 (986)
Q Consensus 543 ~~~v~~~~~~~~~~~f~~~~DvVi~a---~Dn~~ar~~l~~~c~~~~~pli~~ 592 (986)
..+++.++.+ .+.+ |+|+-| -|....-..+-+.|++.|+.-|..
T Consensus 94 pE~it~dNlh-----ll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 94 PENITKDNLH-----LLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred cccccccchh-----hhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 9999876543 3444 777655 467777788899999999877654
No 125
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.25 E-value=0.05 Score=64.79 Aligned_cols=103 Identities=13% Similarity=0.168 Sum_probs=79.3
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
.|++.+|+|||.|.++..=++.|..+|. ++|++-++.- +.++++-..-.++...
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5789999999999999999999999997 7999865421 1122222223466666
Q ss_pred CCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccceEE
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQ 200 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~~G~ 200 (986)
....++.++++++||.|+++.+.-.+|...|++.++++-.++.-....+
T Consensus 63 ~~~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f 111 (457)
T PRK10637 63 GPFDESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASF 111 (457)
T ss_pred CCCChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeE
Confidence 7777888899999999999999999999999999998777765544333
No 126
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.22 E-value=0.02 Score=60.85 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=75.8
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
+|.+++|+|||.|.+|..=++.|+.+|. +++++-++. ++ . ...+.+-+ .+....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~-~~-e--------------------l~~~~~~~---~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF-EP-E--------------------LKALIEEG---KIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc-cH-H--------------------HHHHHHhc---Ccchhh
Confidence 4778999999999999999999999997 677776544 11 0 11222222 245555
Q ss_pred CCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeecccc
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGL 197 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G~ 197 (986)
..+..+.+..+++||.++++.+.-.++...|+++++++-.++--.+
T Consensus 63 ~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~ 108 (210)
T COG1648 63 REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPEL 108 (210)
T ss_pred cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCccc
Confidence 5666777777999999999999999999999999998877765554
No 127
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.17 E-value=0.014 Score=65.09 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=55.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
++.++|+|+|+||.|..++-.|+..|+++|+|++.+. .||+++++.+.+..+...+.....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~~ 185 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVDA 185 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecCH
Confidence 4567999999999999999999999999999998532 388888877765444322322110
Q ss_pred CCCHhhhccccEEEEecC
Q psy7300 153 ELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~ 170 (986)
.-..+.+..+|+||.|+.
T Consensus 186 ~~~~~~~~~~divINaTp 203 (283)
T PRK14027 186 RGIEDVIAAADGVVNATP 203 (283)
T ss_pred hHHHHHHhhcCEEEEcCC
Confidence 000223456788887763
No 128
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.79 E-value=0.016 Score=61.49 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=70.3
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc-cccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCc
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL-IEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNV 537 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~-Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~ 537 (986)
.|.+++|+|||.|.+|.-=++.|+.+|. +++++-++. -+..++-. .+
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga------~v~Vvs~~~~~el~~~~~-----------------------~~--- 56 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA------DVTVVSPEFEPELKALIE-----------------------EG--- 56 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC------EEEEEcCCccHHHHHHHH-----------------------hc---
Confidence 4678899999999999999999999987 999987665 11111111 11
Q ss_pred eEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7300 538 NITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESG 593 (986)
Q Consensus 538 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g 593 (986)
+|..+. ..|+.+.+..+++|+.|+|+.+--..+-+.|..+++|+-.+.
T Consensus 57 ~i~~~~--------~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 57 KIKWIE--------REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVD 104 (210)
T ss_pred Ccchhh--------cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence 122222 234456667799999999999999999999999999865554
No 129
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.65 E-value=0.015 Score=67.25 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=58.0
Q ss_pred HHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCc
Q psy7300 458 EKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNV 537 (986)
Q Consensus 458 ~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~ 537 (986)
..|.+++|+|||+|-+|.-++++|+..|+ .+|+|. ||+. .||.-+++.+. .
T Consensus 174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~-----~~i~Ia----------NRT~---------erA~~La~~~~-----~ 224 (414)
T COG0373 174 GSLKDKKVLVIGAGEMGELVAKHLAEKGV-----KKITIA----------NRTL---------ERAEELAKKLG-----A 224 (414)
T ss_pred cccccCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEE----------cCCH---------HHHHHHHHHhC-----C
Confidence 34889999999999999999999999999 799995 7776 56655555554 2
Q ss_pred eEEEEEcccCCccccccccccccCCCEEEEcCCCHH
Q psy7300 538 NITYHENRVGPETEKVYDDLFFESLDGIANALDNVE 573 (986)
Q Consensus 538 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ 573 (986)
.+..++ + . .+++..+|+||.|+..+.
T Consensus 225 ~~~~l~-------e-l--~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 225 EAVALE-------E-L--LEALAEADVVISSTSAPH 250 (414)
T ss_pred eeecHH-------H-H--HHhhhhCCEEEEecCCCc
Confidence 222221 1 1 467899999999987654
No 130
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.62 E-value=0.028 Score=62.61 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=52.9
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
+.+++|+|+|+||.|..++-.|+..|+ .+|+|+|.+. .|++.+++.+....+...+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~ 180 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-----QKLQVADLDT-------------------SRAQALADVINNAVGREAV 180 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCCH-------------------HHHHHHHHHHhhccCcceE
Confidence 446889999999999999999999999 6999986442 3777777766544443222
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcC
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANAL 569 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~ 569 (986)
.... .. . + ......+|+||||+
T Consensus 181 ~~~~--~~----~-~-~~~~~~~divINaT 202 (283)
T PRK14027 181 VGVD--AR----G-I-EDVIAAADGVVNAT 202 (283)
T ss_pred EecC--Hh----H-H-HHHHhhcCEEEEcC
Confidence 2211 10 0 0 12235789999996
No 131
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.56 E-value=0.029 Score=65.73 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=55.8
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
.+.+++|+|+|+|+.|..++++|...|+.+|+++..+ ..||+.+++.+.. ..+....
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~~----~~~~~~~ 234 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFRN----ASAHYLS 234 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhcC----CeEecHH
Confidence 4678999999999999999999999999999998753 1266666555421 2221111
Q ss_pred CCCCHhhhccccEEEEecCCHH
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYD 173 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~ 173 (986)
+ ..+.+.++|+||.|+.++.
T Consensus 235 -~-l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 235 -E-LPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred -H-HHHHhccCCEEEECcCCCC
Confidence 1 1466889999999997643
No 132
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.52 E-value=0.022 Score=63.50 Aligned_cols=168 Identities=15% Similarity=0.074 Sum_probs=88.9
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCc---cccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLN---RQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLn---Rqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
++|.|||+|.+|+.++.+|++.|. .++++|.+.=.....- ++.+=+...-|......+.+.+.++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---- 75 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV------DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---- 75 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe----
Confidence 479999999999999999999998 9999996642221100 000000011122222222222222211
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcC-CCHHHHHHHHHHHHHc----CCcEEEEeecCCc-ceEEEEeCCCCcccc
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANAL-DNVEARIYMDRRCVYS----RKPLLESGTLGTK-GNSQVVVPHLTESYS 613 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~-Dn~~ar~~l~~~c~~~----~~pli~~g~~G~~-G~v~~~~p~~t~cy~ 613 (986)
. + .+ +-++++|+|+.|+ ++.+.++.+-..+... +. ++-+-|.+.. ........+...+..
T Consensus 76 --~-------~--~~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~-il~snTS~~~~~~la~~~~~~~r~~g 141 (286)
T PRK07819 76 --T-------T--DL--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA-VLASNTSSIPIMKLAAATKRPGRVLG 141 (286)
T ss_pred --e-------C--CH--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc-EEEECCCCCCHHHHHhhcCCCccEEE
Confidence 0 0 11 2368999999875 4567776554433333 33 4444333321 111111111112222
Q ss_pred CCCCCCCCCCCcccccCCCCcchhhHHHHHHHhhhHhhhhH
Q psy7300 614 SSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSA 654 (986)
Q Consensus 614 c~~~~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~F~~~~ 654 (986)
.+.-.|..-.|...+-.-+.+...++++++.++....+..+
T Consensus 142 ~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~p 182 (286)
T PRK07819 142 LHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQV 182 (286)
T ss_pred EecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 22222233446667777788888899999998776565544
No 133
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.49 E-value=0.035 Score=61.89 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=53.9
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec-
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT- 151 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~- 151 (986)
++.++|+|+|+||.|..++..|...|+++|+|++.+ ..||+.+++.+.... . +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~-~--~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG-V--ITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC-c--ceeccc
Confidence 457899999999999999999999999999999753 247777777765432 1 11111
Q ss_pred -CCCCHhhhccccEEEEecC
Q psy7300 152 -GELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 152 -~~~~~~~l~~~dvVI~~~~ 170 (986)
.++ .+.+.++|+||.|+.
T Consensus 181 ~~~~-~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 DSGG-LAIEKAAEVLVSTVP 199 (282)
T ss_pred hhhh-hhcccCCCEEEECCC
Confidence 111 234568999999874
No 134
>PRK04148 hypothetical protein; Provisional
Probab=95.43 E-value=0.15 Score=50.22 Aligned_cols=94 Identities=21% Similarity=0.311 Sum_probs=71.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
++.+|++||+| .|.++|..|...|. .++-+|-+. ..++.+. +. . +++..++
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~~a~----~~--~--~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVEKAK----KL--G--LNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHH----Hh--C--CeEEECc
Confidence 34689999999 99999999999996 888888532 1222222 22 1 2333334
Q ss_pred C---CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 154 L---SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 154 ~---~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
+ +.++.+++|+|..+..+.+....|-+++++.+.+++..--.|
T Consensus 67 lf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 67 LFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3 567889999999999999999999999999999998877555
No 135
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.42 E-value=0.035 Score=61.86 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=31.8
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
+++++|+|+|+||.|..++..|+..|+ .+|+|++.
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-----~~i~I~nR 157 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-----TDITVINR 157 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-----CeEEEEeC
Confidence 567899999999999999999999999 69999864
No 136
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.41 E-value=0.046 Score=64.87 Aligned_cols=36 Identities=36% Similarity=0.487 Sum_probs=33.0
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
+++++|+|+|+|++|.++++.|+..|. +++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~------~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA------KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 578999999999999999999999998 899998764
No 137
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.091 Score=56.57 Aligned_cols=99 Identities=15% Similarity=0.234 Sum_probs=66.8
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
++++|+|||-+|..+++.|+..|- .+++||.|. +.+.+.+. ......++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~------~Vv~Id~d~----------------------~~~~~~~~---~~~~~~~v 49 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH------NVVLIDRDE----------------------ERVEEFLA---DELDTHVV 49 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC------ceEEEEcCH----------------------HHHHHHhh---hhcceEEE
Confidence 479999999999999999999987 899999775 11122122 11233444
Q ss_pred EcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHH-cCCcEEEEee
Q psy7300 543 ENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVY-SRKPLLESGT 594 (986)
Q Consensus 543 ~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~-~~~pli~~g~ 594 (986)
...-.. +...-..=+..+|+|+.++++-..-..+..++.+ +|+|-+-+-+
T Consensus 50 ~gd~t~--~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 50 IGDATD--EDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred EecCCC--HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 333321 2222233368899999999997777777666655 7898777654
No 138
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.35 E-value=0.03 Score=64.90 Aligned_cols=76 Identities=26% Similarity=0.330 Sum_probs=59.2
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
.|..++|+|||+|-+|.-+|++|...|++.|+|.-.+. -||+.+++++. ..+....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~-------------------erA~~La~~~~-----~~~~~l~ 230 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTL-------------------ERAEELAKKLG-----AEAVALE 230 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCH-------------------HHHHHHHHHhC-----CeeecHH
Confidence 48899999999999999999999999999999986533 38888888875 2222211
Q ss_pred CCCCHhhhccccEEEEecCCHH
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYD 173 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~ 173 (986)
--.+.+..+|+||.++..+.
T Consensus 231 --el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 231 --ELLEALAEADVVISSTSAPH 250 (414)
T ss_pred --HHHHhhhhCCEEEEecCCCc
Confidence 12467889999999987544
No 139
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.32 E-value=0.052 Score=60.69 Aligned_cols=84 Identities=21% Similarity=0.227 Sum_probs=53.7
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
+.+++++|+|+||+|..++..|+..|+ .+|+|++.+.- ...|++.+++.+....+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCcee
Confidence 567889999999999999999999999 57999874210 013555556666555555444
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcC
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANAL 569 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~ 569 (986)
.... +... +.. ...+..+|+||||+
T Consensus 183 ~~~d--~~~~-~~~--~~~~~~~DilINaT 207 (289)
T PRK12548 183 NVYD--LNDT-EKL--KAEIASSDILVNAT 207 (289)
T ss_pred EEec--hhhh-hHH--HhhhccCCEEEEeC
Confidence 3222 2211 111 23445678888885
No 140
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.20 E-value=0.055 Score=60.16 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=32.2
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.+.+++|+|+|+||+|..+++.|+..|+ .+|+|++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~-----~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGV-----AEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEeC
Confidence 3677899999999999999999999998 59999864
No 141
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.19 E-value=0.065 Score=63.60 Aligned_cols=96 Identities=23% Similarity=0.307 Sum_probs=66.4
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
|++++|+|+|.|++|..+|+.|+..|. .++++|.+.- . ..+...+.|.+++ +.....
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~-------------~-----~~~~~~~~l~~~~----~~~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE-------------D-----QLKEALEELGELG----IELVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch-------------H-----HHHHHHHHHHhcC----CEEEeC
Confidence 678999999999999999999999997 7999987531 0 1112223344332 334444
Q ss_pred CCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEe
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIA 192 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~ 192 (986)
+..++.+.++|+||.+.... ....+-..|+++|||++.-
T Consensus 60 ~~~~~~~~~~d~vv~~~g~~-~~~~~~~~a~~~~i~~~~~ 98 (450)
T PRK14106 60 EYPEEFLEGVDLVVVSPGVP-LDSPPVVQAHKKGIEVIGE 98 (450)
T ss_pred CcchhHhhcCCEEEECCCCC-CCCHHHHHHHHCCCcEEeH
Confidence 44446677899999887532 2334677889999998863
No 142
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.18 E-value=0.0088 Score=62.06 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=83.6
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCcccc---CcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQF---LFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqf---lf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
+|.|||+|.+|..++-.+++.|. +++++|.+.=.....-+.. |=+..+-|+...+.+...+.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~------ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS------ 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE------
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc------
Confidence 68999999999999999999999 9999998754332221111 00001223333333444444332
Q ss_pred EEEcccCCccccccccccccCCCEEEEcC-CCHHHHHHHHHHHHHc--CCcEEEEeecCCc-ceEEEEeCCCCccccCCC
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANAL-DNVEARIYMDRRCVYS--RKPLLESGTLGTK-GNSQVVVPHLTESYSSSQ 616 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~-Dn~~ar~~l~~~c~~~--~~pli~~g~~G~~-G~v~~~~p~~t~cy~c~~ 616 (986)
+...+ .+.. ++|+||.|+ .+.+.++.+-+..... .-.+|-+-|+++. ..+....++..-+...+.
T Consensus 69 -~~~dl---------~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf 137 (180)
T PF02737_consen 69 -FTTDL---------EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHF 137 (180)
T ss_dssp -EESSG---------GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE
T ss_pred -cccCH---------HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEec
Confidence 11111 2333 999999886 4567776544433332 2235666666543 110000111111222222
Q ss_pred CCCCCCCCcccccCCCCcchhhHHHHHHHhhhH
Q psy7300 617 DPPEKSIPICTLKNFPNAIEHTLQWARDNFEGI 649 (986)
Q Consensus 617 ~~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~ 649 (986)
-.|....|...+-.-|.+..-+++|++++++.+
T Consensus 138 ~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~ 170 (180)
T PF02737_consen 138 FNPPHLMPLVEVVPGPKTSPETVDRVRALLRSL 170 (180)
T ss_dssp -SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHT
T ss_pred ccccccCceEEEeCCCCCCHHHHHHHHHHHHHC
Confidence 223345677777788888888999998887765
No 143
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.12 E-value=0.057 Score=61.13 Aligned_cols=168 Identities=13% Similarity=0.121 Sum_probs=91.2
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
++|.|||+|-+|+.++..++..|+ .++++|.+.=....+ +.....+.+.+.+..+. -...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~------~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~ 67 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL------DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGAS 67 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhH
Confidence 579999999999999999999999 999999764211111 00111111111111110 0000
Q ss_pred EcccCCccccccccccccCCCEEEEcC-CCHHHHHHHHHHHHHcCC--cEEEEeecCCcce-EEEEeCCCCccccCCCCC
Q psy7300 543 ENRVGPETEKVYDDLFFESLDGIANAL-DNVEARIYMDRRCVYSRK--PLLESGTLGTKGN-SQVVVPHLTESYSSSQDP 618 (986)
Q Consensus 543 ~~~v~~~~~~~~~~~f~~~~DvVi~a~-Dn~~ar~~l~~~c~~~~~--pli~~g~~G~~G~-v~~~~p~~t~cy~c~~~~ 618 (986)
..++...+ . + .+.+.++|+|+.|+ .+.+.+..+-+.....-. .+|.+.|++..-. +.-...+-.-|...+.-.
T Consensus 68 ~~~i~~~~-~-l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~Hffn 144 (321)
T PRK07066 68 PARLRFVA-T-I-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFN 144 (321)
T ss_pred HhhceecC-C-H-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCC
Confidence 01111101 0 1 25578999999875 456667655444333322 2888888765311 110111112233333333
Q ss_pred CCCCCCcccccCCCCcchhhHHHHHHHhhhHhhhhH
Q psy7300 619 PEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSA 654 (986)
Q Consensus 619 ~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~F~~~~ 654 (986)
|..-.|...+-.-|.+-.-++++++++++. .+..+
T Consensus 145 P~~~~pLVEVv~g~~T~~e~~~~~~~f~~~-lGk~p 179 (321)
T PRK07066 145 PVYLLPLVEVLGGERTAPEAVDAAMGIYRA-LGMRP 179 (321)
T ss_pred ccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCEe
Confidence 444566666666777777788999988776 44333
No 144
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.08 E-value=0.052 Score=54.05 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=52.9
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCCCe-EEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCC--EEEeecC
Q psy7300 77 DVLISGL-GGLGVEIAKNVILSGVKS-VTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYV--STKAYTG 152 (986)
Q Consensus 77 ~VlIiG~-gglGseiaknLvl~GVg~-itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V--~v~~~~~ 152 (986)
||.|+|+ |.+|+.+|-.|++.|+.+ |.|+|.+. .+++..+.-|...-+.. .+....
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~~i~~- 61 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPVRITS- 61 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc-------------------ccceeeehhhhhhhhhccccccccc-
Confidence 7999999 999999999999999955 99999532 25555555555554333 333333
Q ss_pred CCCHhhhccccEEEEecC
Q psy7300 153 ELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~ 170 (986)
-+.+-+++.|+||.+..
T Consensus 62 -~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 62 -GDYEALKDADIVVITAG 78 (141)
T ss_dssp -SSGGGGTTESEEEETTS
T ss_pred -ccccccccccEEEEecc
Confidence 34567889999999864
No 145
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.04 E-value=0.064 Score=59.63 Aligned_cols=74 Identities=23% Similarity=0.325 Sum_probs=53.8
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+.+++|+|+|+||+|..+++.|...|+.++++++.+ ..|++.+++.+....+ +.+ ..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~ 177 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL 177 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence 567899999999999999999999999999999863 1366666666654321 222 11
Q ss_pred CCCHhhhccccEEEEecC
Q psy7300 153 ELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~ 170 (986)
+. .+.+.++|+||.|+.
T Consensus 178 ~~-~~~~~~~DivInaTp 194 (278)
T PRK00258 178 EL-QEELADFDLIINATS 194 (278)
T ss_pred cc-hhccccCCEEEECCc
Confidence 11 245678899998874
No 146
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.01 E-value=0.077 Score=61.74 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=61.4
Q ss_pred EEEEcCChhHHHHHHHHHHhCCC-eEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCCC-
Q psy7300 78 VLISGLGGLGVEIAKNVILSGVK-SVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELS- 155 (986)
Q Consensus 78 VlIiG~gglGseiaknLvl~GVg-~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~~- 155 (986)
|+|+|+|.+|+.+++.|+..+-. ++++.|.+. .|++...+.+ . ...++...-+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~--~--~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL--L--GDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT----T--TTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc--c--ccceeEEEEecCC
Confidence 79999999999999999999865 899988533 3444444433 2 223333333332
Q ss_pred ----HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEe
Q psy7300 156 ----EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIA 192 (986)
Q Consensus 156 ----~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~ 192 (986)
.++++++|+||.|..+. ....+-+.|.+.++.+|..
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 34788999999998765 5668899999999999994
No 147
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.01 E-value=0.062 Score=59.64 Aligned_cols=75 Identities=23% Similarity=0.283 Sum_probs=56.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
...+|+|+|+||.+..++..|...|+.+|+|+..+. .||+.+++.+.+..+.+.......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~-------------------~ra~~La~~~~~~~~~~~~~~~~~- 184 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR-------------------ERAEELADLFGELGAAVEAAALAD- 184 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHhhhcccccccccccc-
Confidence 358899999999999999999999999999998533 488888888888877333322221
Q ss_pred CCHhhhccccEEEEecC
Q psy7300 154 LSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~ 170 (986)
.+....+|+||.|+.
T Consensus 185 --~~~~~~~dliINaTp 199 (283)
T COG0169 185 --LEGLEEADLLINATP 199 (283)
T ss_pred --cccccccCEEEECCC
Confidence 111126899988874
No 148
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.00 E-value=0.086 Score=58.95 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=53.5
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+++++|+|+|+||+|..++..|+..|+++|+|++.+.- ...|++.+++.+.+..+.+.+....-
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~d~ 187 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVYDL 187 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEech
Confidence 56789999999999999999999999999999985320 12367777777766555444432211
Q ss_pred C-C--CHhhhccccEEEEec
Q psy7300 153 E-L--SEAFIKKFRVVVLTN 169 (986)
Q Consensus 153 ~-~--~~~~l~~~dvVI~~~ 169 (986)
. . -.+.+..+|+||.|+
T Consensus 188 ~~~~~~~~~~~~~DilINaT 207 (289)
T PRK12548 188 NDTEKLKAEIASSDILVNAT 207 (289)
T ss_pred hhhhHHHhhhccCCEEEEeC
Confidence 0 0 012334556666555
No 149
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.87 E-value=0.096 Score=62.45 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=72.6
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
.|++++|+|||.|.++..=++.|...|. +|+||-++.- +.+..+-..-+
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga------~v~visp~~~-------------------------~~~~~l~~~~~ 57 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA------RLTVNALAFI-------------------------PQFTAWADAGM 57 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCCCC-------------------------HHHHHHHhCCC
Confidence 5789999999999999999999999987 9999865421 01111111223
Q ss_pred EEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 539 ITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
|+.+.... ....+.++++|+.|+|+.+.-..+.+.|...++++ +....--.|.
T Consensus 58 i~~~~~~~--------~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lv-N~~d~~~~~~ 110 (457)
T PRK10637 58 LTLVEGPF--------DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFC-NVVDAPKAAS 110 (457)
T ss_pred EEEEeCCC--------ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEE-EECCCcccCe
Confidence 44444433 34567899999999999999999999999998864 4443333343
No 150
>PRK04148 hypothetical protein; Provisional
Probab=94.82 E-value=0.27 Score=48.40 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=70.4
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
++.+|++||+| -|.+++..|+.+|. .++.+|.+.- +.+.++.. .+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~------~ViaIDi~~~-----------------------aV~~a~~~----~~~ 61 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF------DVIVIDINEK-----------------------AVEKAKKL----GLN 61 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC------EEEEEECCHH-----------------------HHHHHHHh----CCe
Confidence 34689999999 99999999999998 9999995541 22222222 234
Q ss_pred EEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESG 593 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g 593 (986)
+...++-+. +.++.+++|+|...-=.++-...+-+.+.+.+.+++---
T Consensus 62 ~v~dDlf~p-----~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 62 AFVDDLFNP-----NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred EEECcCCCC-----CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 555554322 246789999999998888888999999999999987654
No 151
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.81 E-value=0.16 Score=56.67 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=30.0
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
.+|.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF------DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999998 899999653
No 152
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.71 E-value=0.25 Score=55.76 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=29.6
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
++|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~------~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL------QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCH
Confidence 479999999999999999999987 899998653
No 153
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.68 E-value=0.23 Score=53.51 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=63.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC-
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL- 154 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~- 154 (986)
.+++|+|+|-+|..+|++|...|- .++++|.|.- + +.+.+.+ .....++..+-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~-------------------~---~~~~~~~---~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE-------------------R---VEEFLAD---ELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH-------------------H---HHHHhhh---hcceEEEEecCC
Confidence 479999999999999999999997 5777775431 1 1122221 11233333222
Q ss_pred CHhh-----hccccEEEEecCCHHHHHHHHHHHHH-cCCcEEEeeccc
Q psy7300 155 SEAF-----IKKFRVVVLTNSTYDEQLAISQITHA-NDIALIIADTRG 196 (986)
Q Consensus 155 ~~~~-----l~~~dvVI~~~~~~~~~~~i~~~c~~-~~ip~I~~~~~G 196 (986)
+++. +.++|++|.++.+-..-..+..++.+ .|+|-+.+....
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 3333 46899999998876666666666655 799988877554
No 154
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.68 E-value=0.052 Score=63.66 Aligned_cols=77 Identities=21% Similarity=0.377 Sum_probs=52.5
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
.+.+++|+|+|+|++|..++++|+..|+ .+|+|+. |.. .|++.+++.+ +...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~-----~~I~V~n----------Rt~---------~ra~~La~~~----~~~~ 229 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP-----KQIMLAN----------RTI---------EKAQKITSAF----RNAS 229 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEC----------CCH---------HHHHHHHHHh----cCCe
Confidence 4678999999999999999999999999 6899974 321 3444444432 1122
Q ss_pred EEEEEcccCCccccccccccccCCCEEEEcCCCHH
Q psy7300 539 ITYHENRVGPETEKVYDDLFFESLDGIANALDNVE 573 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ 573 (986)
+..+. +. .+.+.++|+||+|+-.+.
T Consensus 230 ~~~~~--------~l--~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 230 AHYLS--------EL--PQLIKKADIIIAAVNVLE 254 (414)
T ss_pred EecHH--------HH--HHHhccCCEEEECcCCCC
Confidence 11111 11 356789999999987643
No 155
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.56 E-value=0.093 Score=59.18 Aligned_cols=73 Identities=27% Similarity=0.358 Sum_probs=51.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCC-eEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC----CCCEEEee
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVK-SVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN----PYVSTKAY 150 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg-~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN----p~V~v~~~ 150 (986)
.+|.|+|+|++|+.+|..|+..|+. +|+|+|.+. .|++..+..|.+.. ..+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~-------------------~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE-------------------EKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------chhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999995 899999632 24444455554442 2233332
Q ss_pred cCCCCHhhhccccEEEEecCC
Q psy7300 151 TGELSEAFIKKFRVVVLTNST 171 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~~ 171 (986)
. +.+-+.++|+||.|...
T Consensus 61 -~--~~~~l~~aDIVIitag~ 78 (306)
T cd05291 61 -G--DYSDCKDADIVVITAGA 78 (306)
T ss_pred -C--CHHHhCCCCEEEEccCC
Confidence 2 33457899999998753
No 156
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.51 E-value=0.13 Score=57.36 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=53.6
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
++.++|+|+|+||.+..++-.|+..|+++|+|++.+. + ...||+.+++++....+ ..+....-
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~--------------~--~~~ka~~la~~~~~~~~-~~~~~~~~ 184 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E--FFDKALAFAQRVNENTD-CVVTVTDL 184 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------c--HHHHHHHHHHHhhhccC-ceEEEech
Confidence 4677999999999999999999999999999999532 0 23588888777754332 22222111
Q ss_pred C-C--CHhhhccccEEEEec
Q psy7300 153 E-L--SEAFIKKFRVVVLTN 169 (986)
Q Consensus 153 ~-~--~~~~l~~~dvVI~~~ 169 (986)
. . -.+.+.++|+||.|+
T Consensus 185 ~~~~~l~~~~~~aDivINaT 204 (288)
T PRK12749 185 ADQQAFAEALASADILTNGT 204 (288)
T ss_pred hhhhhhhhhcccCCEEEECC
Confidence 0 0 012345678877766
No 157
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.51 E-value=0.054 Score=48.12 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=39.3
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhC
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMN 534 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~n 534 (986)
||+|||+|.+|+|+|..|+..|. +++|++...--. ...+..=+..+.+.+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~------~vtli~~~~~~~-----------~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK------EVTLIERSDRLL-----------PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS------EEEEEESSSSSS-----------TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc------EEEEEeccchhh-----------hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999997 999998543211 2233333555666776664
No 158
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.42 E-value=0.11 Score=57.57 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=52.9
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
.+++|+|+|+||.+..++..|+..|+ .+|+|++ |.. .|++.+++.+.+..+.+...
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~-----~~i~V~N----------Rt~---------~ra~~La~~~~~~~~~~~~~ 180 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA-----KRITVVN----------RTR---------ERAEELADLFGELGAAVEAA 180 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEe----------CCH---------HHHHHHHHHhhhcccccccc
Confidence 56889999999999999999999999 6999974 322 67777788777776522221
Q ss_pred EEEcccCCccccccccccccCCCEEEEcC
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANAL 569 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~ 569 (986)
.... .+-.+.+|+||||+
T Consensus 181 ~~~~-----------~~~~~~~dliINaT 198 (283)
T COG0169 181 ALAD-----------LEGLEEADLLINAT 198 (283)
T ss_pred cccc-----------cccccccCEEEECC
Confidence 1110 01112789999996
No 159
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.35 E-value=0.2 Score=55.62 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=29.8
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
++|.|||+|-+|+.++..|+..|. .++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~------~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY------DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC------ceEEEeCCH
Confidence 479999999999999999999998 899998653
No 160
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=94.32 E-value=0.025 Score=59.38 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=48.6
Q ss_pred hcccHHHHHHhhcCcEEEEcCChhHHH-HHHHHHHhCCCeE------EEE---eCCCCCccCCCcccc
Q psy7300 63 YVLGHDAMRRMASSDVLISGLGGLGVE-IAKNVILSGVKSV------TLH---DTTATSLSDLSSQFY 120 (986)
Q Consensus 63 ~l~G~~~q~kL~~s~VlIiG~gglGse-iaknLvl~GVg~i------tlv---D~d~V~~sdl~rqf~ 120 (986)
..=+..+++++++++|.|+|.|+.|++ ++..|..+||+.+ +++ |.+..+.+++++|++
T Consensus 93 g~~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 93 GVDPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred CCCHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 344678899999999999999999988 9999999999998 888 777777777766544
No 161
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.28 E-value=0.078 Score=53.02 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=30.9
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++|+|+|+|++|..+++.|+..|. ..++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~-----~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA-----AKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCC
Confidence 457899999999999999999999874 489998744
No 162
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=94.12 E-value=0.025 Score=51.11 Aligned_cols=41 Identities=32% Similarity=0.388 Sum_probs=31.8
Q ss_pred cCCCCchhhhhhchhHHHHHHhhhCCCcc-ccccccccchhh
Q psy7300 388 AGNCNPVNAVIGGIVAQEVMKACSGKFHP-IFQWLYFDAVEC 428 (986)
Q Consensus 388 ~~el~pvaA~iGGi~AQEvIKaiT~kf~P-i~q~~~fD~~e~ 428 (986)
.+-|.|+..++|.+.|+|+||.|+|.-.| .+.+++||+...
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~ 64 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNM 64 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCC
Confidence 37799999999999999999999998777 457888998755
No 163
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.10 E-value=0.21 Score=56.43 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=54.9
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+...+|+|+|+|.+|..++++|...|+..++++|.+. .|++.+++.+.. .+....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g~-----~~~~~~- 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELGG-----NAVPLD- 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcCC-----eEEeHH-
Confidence 5789999999999999999999999999999998632 355555555421 221111
Q ss_pred CCCHhhhccccEEEEecCCHHH
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYDE 174 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~~ 174 (986)
+ ..+.+..+|+||.|+.+...
T Consensus 231 ~-~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 231 E-LLELLNEADVVISATGAPHY 251 (311)
T ss_pred H-HHHHHhcCCEEEECCCCCch
Confidence 1 13456789999999976555
No 164
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.04 E-value=0.072 Score=54.66 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHhcCcEEEEecChh-hHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGAGAI-GCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGaGgi-G~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.|.+++|+|||+|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~------~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA------TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC------EEEEEEC
Confidence 478999999999985 8889999999988 7888873
No 165
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.01 E-value=0.12 Score=57.71 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=52.5
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
+.+++|+|+|+||.+..++-.|+..|+ .+|+|++.+. -...|++.+++.+....+ ..+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-----~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~ 179 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-----KEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVV 179 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceE
Confidence 467789999999999999999999999 7999987321 013567766666644322 122
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcC
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANAL 569 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~ 569 (986)
.... ... ...+ .+-..++|+||||+
T Consensus 180 ~~~~--~~~--~~~l-~~~~~~aDivINaT 204 (288)
T PRK12749 180 TVTD--LAD--QQAF-AEALASADILTNGT 204 (288)
T ss_pred EEec--hhh--hhhh-hhhcccCCEEEECC
Confidence 2211 110 0001 12345789999985
No 166
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.93 E-value=0.18 Score=59.44 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=53.1
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.+. .|++..++.+.. ..+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~-------------------~ra~~la~~~g~----~~i~~-- 231 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY-------------------ERAEDLAKELGG----EAVKF-- 231 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHcCC----eEeeH--
Confidence 36789999999999999999999999999999998632 244444443321 11111
Q ss_pred CCCCHhhhccccEEEEecCCHH
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYD 173 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~ 173 (986)
.+ ..+.+.++|+||.|+.+..
T Consensus 232 ~~-l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 232 ED-LEEYLAEADIVISSTGAPH 252 (417)
T ss_pred HH-HHHHHhhCCEEEECCCCCC
Confidence 11 1356678999999986543
No 167
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.85 E-value=0.054 Score=56.03 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=34.2
Q ss_pred HHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccc
Q psy7300 458 EKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIE 503 (986)
Q Consensus 458 ~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie 503 (986)
..|.+++|.|+|+|.||.++++.|...|+ ++..+|...-.
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~~~~~ 71 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM------RVIGYDRSPKP 71 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-------EEEEEESSCHH
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc------eeEEecccCCh
Confidence 47899999999999999999999999998 99999976543
No 168
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.84 E-value=0.51 Score=43.16 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=53.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC--CeEEEE-eCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGV--KSVTLH-DTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GV--g~itlv-D~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
||.|||+|.+|+.+++.|+.+|+ .++.++ +.+ ..|++.++ +..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------------------~~~~~~~~----~~~~-~~~~~~--- 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------------------PEKAAELA----KEYG-VQATAD--- 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------------------HHHHHHHH----HHCT-TEEESE---
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------------------HHHHHHHH----Hhhc-cccccC---
Confidence 68999999999999999999994 344433 421 12333333 3333 222221
Q ss_pred CCHhhhccccEEEEecCCHHHHHHHHHHH-HHcCCcEEEe
Q psy7300 154 LSEAFIKKFRVVVLTNSTYDEQLAISQIT-HANDIALIIA 192 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~~~~~~~~i~~~c-~~~~ip~I~~ 192 (986)
-..+.++..|+||+|..+......+.++. ...+.-+|+.
T Consensus 54 ~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 54 DNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp EHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred ChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence 13567789999999998766665555552 3344445554
No 169
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.77 E-value=0.2 Score=51.01 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=64.1
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
++|.+||+|..|+.++++|+..|. .++++|.+.=...-+.. .|-..+...++.+..- ++-+...
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~------~v~~~d~~~~~~~~~~~--------~g~~~~~s~~e~~~~~--dvvi~~v 65 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY------EVTVYDRSPEKAEALAE--------AGAEVADSPAEAAEQA--DVVILCV 65 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT------EEEEEESSHHHHHHHHH--------TTEEEESSHHHHHHHB--SEEEE-S
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC------eEEeeccchhhhhhhHH--------hhhhhhhhhhhHhhcc--cceEeec
Confidence 579999999999999999999998 89999855311111110 0111111222333322 2222222
Q ss_pred EcccCCccccc-cc---cccccCCCEEEEcC-CCHHHHHHHHHHHHHcCCcEEEEeecCC
Q psy7300 543 ENRVGPETEKV-YD---DLFFESLDGIANAL-DNVEARIYMDRRCVYSRKPLLESGTLGT 597 (986)
Q Consensus 543 ~~~v~~~~~~~-~~---~~f~~~~DvVi~a~-Dn~~ar~~l~~~c~~~~~pli~~g~~G~ 597 (986)
... +..+.. +. ......-.+||++. -+++..+.+.+.+...++.+|++...|.
T Consensus 66 ~~~--~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 66 PDD--DAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp SSH--HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred ccc--hhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 211 001111 11 12234456777754 4577778888999999999999998875
No 170
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.65 E-value=0.095 Score=53.35 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=63.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC-
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL- 154 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~- 154 (986)
.+|.+||+|..|+.+|+||..+|. +++++|.+.-....+... |-..+....+.+++. ++-+......-
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 479999999999999999999998 689998543111111110 111111111222222 33333333211
Q ss_pred CHh------hh---ccccEEEEec-CCHHHHHHHHHHHHHcCCcEEEeecccc
Q psy7300 155 SEA------FI---KKFRVVVLTN-STYDEQLAISQITHANDIALIIADTRGL 197 (986)
Q Consensus 155 ~~~------~l---~~~dvVI~~~-~~~~~~~~i~~~c~~~~ip~I~~~~~G~ 197 (986)
..+ ++ ..-++||+++ .+++...++.+.+.++++.||.+.+.|.
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 011 22 2446777765 5677788999999999999999998873
No 171
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.59 E-value=0.17 Score=57.22 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=54.6
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
+.+.+|+|+|+|.+|..+++.|...|. .+++++|.+. .|+..+++. +.. .+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-----~~V~v~~r~~-------------------~ra~~la~~---~g~--~~ 226 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-----AEITIANRTY-------------------ERAEELAKE---LGG--NA 226 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-----CEEEEEeCCH-------------------HHHHHHHHH---cCC--eE
Confidence 678999999999999999999998887 5899987542 233333322 221 11
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHH
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRR 581 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~ 581 (986)
.. .. +. .+.+..+|+||.|+.+......+...
T Consensus 227 --~~--~~----~~--~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 227 --VP--LD----EL--LELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred --Ee--HH----HH--HHHHhcCCEEEECCCCCchHHHHHHH
Confidence 11 10 11 24467899999999987763333433
No 172
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.55 E-value=0.52 Score=52.77 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=30.0
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
++|.|||+|-+|+.++..|+..|. .++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~------~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM------DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999998 899998654
No 173
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.55 E-value=0.45 Score=57.37 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=30.1
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
++|.|||+|.+|+.++.+|+..|. .++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~------~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI------DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCH
Confidence 479999999999999999999998 899999754
No 174
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.52 E-value=0.23 Score=49.57 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=32.1
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
++..+|+|+|+|++|..+++.|...|...++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 557899999999999999999999987789999853
No 175
>PLN00203 glutamyl-tRNA reductase
Probab=93.47 E-value=0.14 Score=61.72 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=54.1
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
|...+|+|||+|.+|..++++|...|+.++++++.+. .|++.+++.+ +.+.+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~-------------------era~~La~~~----~g~~i~~~~~ 320 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE-------------------ERVAALREEF----PDVEIIYKPL 320 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH-------------------HHHHHHHHHh----CCCceEeecH
Confidence 5579999999999999999999999999999987531 2555544443 2333332221
Q ss_pred CCCHhhhccccEEEEecCCH
Q psy7300 153 ELSEAFIKKFRVVVLTNSTY 172 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~ 172 (986)
.-..+.+.++|+||.|+.+.
T Consensus 321 ~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 321 DEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred hhHHHHHhcCCEEEEccCCC
Confidence 11235678999999997543
No 176
>KOG4169|consensus
Probab=93.45 E-value=0.12 Score=54.81 Aligned_cols=116 Identities=25% Similarity=0.351 Sum_probs=72.7
Q ss_pred HhcCcEEEEe-cChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 460 LGKLKYFVVG-AGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 460 L~~~~VlvvG-aGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
+.+++++++| |||||-++.|.|+.-|+ +..++|. ..| | -.+...|+++||..+
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi------k~~~i~~-~~E--n-----------------~~a~akL~ai~p~~~ 56 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI------KVLVIDD-SEE--N-----------------PEAIAKLQAINPSVS 56 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc------hheeehh-hhh--C-----------------HHHHHHHhccCCCce
Confidence 4577888775 89999999999999999 4455541 111 1 235678999999999
Q ss_pred EEEEEcccCCcc--cccccc--ccccCCCEEEEcCC-----CHHHHHHHHHHHH----HcCCcEEEEeecCCcceE
Q psy7300 539 ITYHENRVGPET--EKVYDD--LFFESLDGIANALD-----NVEARIYMDRRCV----YSRKPLLESGTLGTKGNS 601 (986)
Q Consensus 539 i~~~~~~v~~~~--~~~~~~--~f~~~~DvVi~a~D-----n~~ar~~l~~~c~----~~~~pli~~g~~G~~G~v 601 (986)
+.-+..+|.... +..|+. .-|...|++||... +++.-.-+|-..+ ....|+.+---.|..|-+
T Consensus 57 v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiI 132 (261)
T KOG4169|consen 57 VIFIKCDVTNRGDLEAAFDKILATFGTIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGII 132 (261)
T ss_pred EEEEEeccccHHHHHHHHHHHHHHhCceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEE
Confidence 999988886421 223321 33678899998632 2333233333222 233456555554555543
No 177
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.43 E-value=0.39 Score=46.66 Aligned_cols=95 Identities=22% Similarity=0.235 Sum_probs=60.8
Q ss_pred cEEEEcC-ChhHHHHHHHHHH-hCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC
Q psy7300 77 DVLISGL-GGLGVEIAKNVIL-SGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL 154 (986)
Q Consensus 77 ~VlIiG~-gglGseiaknLvl-~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~ 154 (986)
||.|+|+ |-+|.++++.+.. .|+.=.-.+|...- +. ...|+| +.+..-...+.+. .+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~---~~------~g~d~g--------~~~~~~~~~~~v~---~~- 60 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS---AK------VGKDVG--------ELAGIGPLGVPVT---DD- 60 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS---TT------TTSBCH--------HHCTSST-SSBEB---S--
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc---cc------ccchhh--------hhhCcCCcccccc---hh-
Confidence 7999999 9999999999999 77766677776441 10 113443 1121112233332 12
Q ss_pred CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEee
Q psy7300 155 SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIAD 193 (986)
Q Consensus 155 ~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~ 193 (986)
-++.+..+|+||+.+ .++......++|.++++|+|.+.
T Consensus 61 l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 61 LEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-
T ss_pred HHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEEC
Confidence 245667799999999 66777788889999999998764
No 178
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.39 E-value=0.24 Score=56.11 Aligned_cols=75 Identities=27% Similarity=0.441 Sum_probs=52.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCC-eEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCC-EEEeecC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGVK-SVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYV-STKAYTG 152 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GVg-~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V-~v~~~~~ 152 (986)
..||.|||+|.+|+.+|-.|+..|+- +|.|+|-. +.+++..+.-|+...|.. .+.....
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~-------------------~~~~~g~~~Dl~~~~~~~~~~~i~~~ 66 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN-------------------KEKAEGDAMDLSHAVPFTSPTKIYAG 66 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CchhHHHHHHHHhhccccCCeEEEeC
Confidence 46999999999999999999999995 79999952 234445555566655421 2222222
Q ss_pred CCCHhhhccccEEEEecC
Q psy7300 153 ELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~ 170 (986)
+.+-++++|+||.+..
T Consensus 67 --~~~~~~~adivIitag 82 (315)
T PRK00066 67 --DYSDCKDADLVVITAG 82 (315)
T ss_pred --CHHHhCCCCEEEEecC
Confidence 2345789999998764
No 179
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.34 E-value=0.3 Score=58.23 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=69.0
Q ss_pred HHHHHHHhcCcEEEEecC-hhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHh
Q psy7300 454 KNFQEKLGKLKYFVVGAG-AIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKV 532 (986)
Q Consensus 454 ~~~q~~L~~~~VlvvGaG-giG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~ 532 (986)
...++-+.+++|+|-|+| .+|+|+++.++..+. .+|.++|.|. .|-......+++
T Consensus 242 ~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~E-------------------~~~~~i~~el~~ 297 (588)
T COG1086 242 ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRDE-------------------YKLYLIDMELRE 297 (588)
T ss_pred HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCch-------------------HHHHHHHHHHHh
Confidence 455678899999999985 599999999999988 7999988665 445566777888
Q ss_pred hCCCceEEEEEcccCCccccccccccccC--CCEEEEcC
Q psy7300 533 MNPNVNITYHENRVGPETEKVYDDLFFES--LDGIANAL 569 (986)
Q Consensus 533 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~--~DvVi~a~ 569 (986)
..|..++..+-.++.+... . ...+++ .|+|+-|.
T Consensus 298 ~~~~~~~~~~igdVrD~~~-~--~~~~~~~kvd~VfHAA 333 (588)
T COG1086 298 KFPELKLRFYIGDVRDRDR-V--ERAMEGHKVDIVFHAA 333 (588)
T ss_pred hCCCcceEEEecccccHHH-H--HHHHhcCCCceEEEhh
Confidence 8888899888888764321 2 355666 88988763
No 180
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=93.28 E-value=0.16 Score=49.02 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=57.2
Q ss_pred cEEEEe-cChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCC-CCCcHHHHHHHHHHhhCCCceEEE
Q psy7300 464 KYFVVG-AGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHD-VQQPKSATAAKAIKVMNPNVNITY 541 (986)
Q Consensus 464 ~VlvvG-aGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~d-iG~~Ka~~a~~~l~~~np~~~i~~ 541 (986)
||+||| .|.+|.++++.|+..=- =+++.+ +..+. .|+.=+.... .......+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-----~e~~~~---------------~~~~~~~g~~~~~~~~----~~~~~~~~~~ 56 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-----FELVAL---------------VSSSRSAGKPLSEVFP----HPKGFEDLSV 56 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-----EEEEEE---------------EESTTTTTSBHHHTTG----GGTTTEEEBE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-----ccEEEe---------------eeeccccCCeeehhcc----ccccccceeE
Confidence 699999 69999999999996311 122221 22333 5554322211 1111111211
Q ss_pred EEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEee
Q psy7300 542 HENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGT 594 (986)
Q Consensus 542 ~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~ 594 (986)
.. ++.+.+.+.|+|+.|+++..++.+.... ...|+++|+.+.
T Consensus 57 ~~----------~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~ 98 (121)
T PF01118_consen 57 ED----------ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSG 98 (121)
T ss_dssp EE----------TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSS
T ss_pred ee----------cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCH
Confidence 11 1234569999999999998887777766 788888888764
No 181
>PLN02602 lactate dehydrogenase
Probab=93.24 E-value=0.24 Score=56.77 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=51.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC---CCCEEEeec
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGV-KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN---PYVSTKAYT 151 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GV-g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN---p~V~v~~~~ 151 (986)
.+|.|||+|.+|+.+|-.|+..|+ .++.|+|-+. .|++..+.-|+... +.++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~-------------------~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP-------------------DKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC-------------------chhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999999 5799999521 23333344444433 23444432
Q ss_pred CCCCHhhhccccEEEEecC
Q psy7300 152 GELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~ 170 (986)
-+.+.++++|+||.+..
T Consensus 98 --~dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 --TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred --CCHHHhCCCCEEEECCC
Confidence 13455899999999854
No 182
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.19 E-value=0.089 Score=56.69 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=34.1
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCC--eEEEEeCC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGG--QIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g--~i~ivD~D 500 (986)
.+++.||+|+|+|+.|+.+++.|+..|+ . +|+|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-----~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-----KPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-----CcceEEEEeCC
Confidence 4788899999999999999999999999 6 89999976
No 183
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.18 E-value=0.4 Score=53.50 Aligned_cols=33 Identities=36% Similarity=0.511 Sum_probs=30.1
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
++|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~------~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF------QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC------cEEEEeCCH
Confidence 479999999999999999999998 899999764
No 184
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.17 E-value=0.33 Score=54.76 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=51.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCC-----CCEEEee
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGV-KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNP-----YVSTKAY 150 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GV-g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp-----~V~v~~~ 150 (986)
||.|||+|.+|+.+|-.|+..|+ +++.|+|-. +.|++..+.-|+...+ .+++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~-------------------~~~a~g~a~DL~~~~~~~~~~~~~i~-- 59 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN-------------------EGVAEGEALDFHHATALTYSTNTKIR-- 59 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHHHHHHHhhhccCCCCCEEEE--
Confidence 68999999999999999999998 679999941 2244444445555433 34444
Q ss_pred cCCCCHhhhccccEEEEecC
Q psy7300 151 TGELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~ 170 (986)
.. +.+-+++.|+||.|..
T Consensus 60 ~~--~y~~~~~aDivvitaG 77 (307)
T cd05290 60 AG--DYDDCADADIIVITAG 77 (307)
T ss_pred EC--CHHHhCCCCEEEECCC
Confidence 23 3567889999998764
No 185
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.16 E-value=0.26 Score=55.62 Aligned_cols=34 Identities=21% Similarity=0.540 Sum_probs=29.9
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+||.|+|+|++|+.++..|+..|+. .+|.++|.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~----~ei~l~D~~ 34 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA----DELVLIDIN 34 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC
Confidence 3799999999999999999999983 489999854
No 186
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.14 E-value=0.3 Score=63.15 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=63.9
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCCCc-----CCC---CeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHh
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGVGA-----GPG---GQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKV 532 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv~~-----g~~---g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~ 532 (986)
+.++|+|+|||.+|..++++|+..+-.. +.+ -.++|.|.+. .+++.+++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~-------------------~~a~~la~---- 624 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL-------------------KDAKETVE---- 624 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH-------------------HHHHHHHH----
Confidence 4678999999999999999999753210 000 0255555432 22222222
Q ss_pred hCCCceEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7300 533 MNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESG 593 (986)
Q Consensus 533 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g 593 (986)
..|++. +...++.+. +.. ..+++++|+||+|+-.. ....+...|.++|+++++..
T Consensus 625 ~~~~~~--~v~lDv~D~-e~L--~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 625 GIENAE--AVQLDVSDS-ESL--LKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hcCCCc--eEEeecCCH-HHH--HHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence 234433 333333321 212 34457899999998773 34678899999999998774
No 187
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.05 E-value=0.42 Score=47.58 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=51.2
Q ss_pred CcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCC--ceE
Q psy7300 463 LKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPN--VNI 539 (986)
Q Consensus 463 ~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~--~~i 539 (986)
.||.|||+ |.+|+.++-.|++.|++ .+|.++|.+. .|++.-+.-+....+. ..+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~----~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~ 57 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA----DEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPV 57 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS----SEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CceEEeccCc-------------------ccceeeehhhhhhhhhccccc
Confidence 37999999 99999999999999995 5799998543 2444444444443222 233
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCCC
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALDN 571 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn 571 (986)
.... + +.+-++++|+||.+...
T Consensus 58 ~i~~---~-------~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 58 RITS---G-------DYEALKDADIVVITAGV 79 (141)
T ss_dssp EEEE---S-------SGGGGTTESEEEETTST
T ss_pred cccc---c-------cccccccccEEEEeccc
Confidence 3322 1 12446899999988653
No 188
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.03 E-value=1.6 Score=41.31 Aligned_cols=87 Identities=28% Similarity=0.354 Sum_probs=57.9
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC-CH
Q psy7300 78 VLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL-SE 156 (986)
Q Consensus 78 VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~-~~ 156 (986)
|+|+|+|.+|.++++.|...| -.++++|.+.- + .+.+++.. +.++..+. ++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 789999999999999999944 68999997541 2 23333333 22334443 33
Q ss_pred hh-----hccccEEEEecCCHHHHHHHHHHHHHc-CCcEEEe
Q psy7300 157 AF-----IKKFRVVVLTNSTYDEQLAISQITHAN-DIALIIA 192 (986)
Q Consensus 157 ~~-----l~~~dvVI~~~~~~~~~~~i~~~c~~~-~ip~I~~ 192 (986)
+. +.+++.||.++++......+...+++. ..+-|.+
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 33 468899999998877777888888873 3334443
No 189
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.88 E-value=0.31 Score=55.09 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=51.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCC-eEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCC---CCEEEee
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGVK-SVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNP---YVSTKAY 150 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GVg-~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp---~V~v~~~ 150 (986)
..||.|||+|.+|+.+|-.|+..|+. ++.|+|-.. .+++..+.-|+...| ..+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~-------------------~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE-------------------DKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------cHHHHHHHHHHHhhccCCCCEEEEC
Confidence 45899999999999999999999995 699999522 234444444555443 2344432
Q ss_pred cCCCCHhhhccccEEEEecC
Q psy7300 151 TGELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~ 170 (986)
. +.+-+++.|+||.|..
T Consensus 64 -~--dy~~~~~adivvitaG 80 (312)
T cd05293 64 -K--DYSVTANSKVVIVTAG 80 (312)
T ss_pred -C--CHHHhCCCCEEEECCC
Confidence 2 3345899999998653
No 190
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.57 E-value=0.37 Score=53.84 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=30.2
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
-++|.|||+|.+|+.++.+|+..|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~------~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY------DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 3679999999999999999999998 89999965
No 191
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.56 E-value=0.5 Score=53.67 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=50.5
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
++..+|.|||+|.+|+.+|-.++..|+..+.|+|-+.-.. .| ++.-............+|....
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~-------------~~--~~ld~~~~~~~~~~~~~I~~~~- 67 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIP-------------QG--KALDISHSNVIAGSNSKVIGTN- 67 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchh-------------hH--HHHHHHhhhhccCCCeEEEECC-
Confidence 4557999999999999999999999987799999633110 01 1111111122222334555322
Q ss_pred CCCHhhhccccEEEEec
Q psy7300 153 ELSEAFIKKFRVVVLTN 169 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~ 169 (986)
+.+-+++.|+||.+.
T Consensus 68 --d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 68 --NYEDIAGSDVVIVTA 82 (321)
T ss_pred --CHHHhCCCCEEEECC
Confidence 224578999999976
No 192
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.55 E-value=0.15 Score=57.79 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=32.5
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.|.+++|.|||+|.||+.+++-|...|+ ++..+|+
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm------~v~~~d~ 173 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM------KVIGYDP 173 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC------eEEEECC
Confidence 6789999999999999999999999999 8888886
No 193
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.51 E-value=0.42 Score=51.97 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=30.4
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
+|.+++|+|.|+ ||||.++++.|+..|. +++++|.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~------~vv~~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA------AVALADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 467889999996 7999999999999997 7888773
No 194
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.49 E-value=0.27 Score=57.72 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=32.8
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
+.+++|+|+|+|.+|..+++.|..+|+ +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga------~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA------RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCc
Confidence 578999999999999999999999998 899998664
No 195
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.49 E-value=0.41 Score=53.85 Aligned_cols=71 Identities=24% Similarity=0.339 Sum_probs=51.6
Q ss_pred EEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCC---CEEEeecCC
Q psy7300 78 VLISGLGGLGVEIAKNVILSGV-KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPY---VSTKAYTGE 153 (986)
Q Consensus 78 VlIiG~gglGseiaknLvl~GV-g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~---V~v~~~~~~ 153 (986)
|.|||+|.+|+.+|-.|+..|+ .+++|+|.+. .|++..+.-|.+..+. +.+... .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~-------------------~~~~g~~~DL~~~~~~~~~~~i~~~-~- 59 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE-------------------EKAKGDALDLSHASAFLATGTIVRG-G- 59 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------cHHHHHHHhHHHhccccCCCeEEEC-C-
Confidence 5799999999999999999998 5699999532 3555555666666543 344321 1
Q ss_pred CCHhhhccccEEEEecC
Q psy7300 154 LSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~ 170 (986)
+.+-++++|+||.|..
T Consensus 60 -~~~~l~~aDiVIitag 75 (300)
T cd00300 60 -DYADAADADIVVITAG 75 (300)
T ss_pred -CHHHhCCCCEEEEcCC
Confidence 2457889999999875
No 196
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.45 E-value=0.54 Score=49.18 Aligned_cols=79 Identities=20% Similarity=0.168 Sum_probs=53.0
Q ss_pred HhhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 72 RMASSDVLISGL-GGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 72 kL~~s~VlIiG~-gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
.+++++|+|+|. |++|..+++.|+..| .++++++.+ ..|++.+.+.+.+.. .+.+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467899999996 999999999999988 489998753 235666666665332 2333322
Q ss_pred c-CCCC--HhhhccccEEEEecCC
Q psy7300 151 T-GELS--EAFIKKFRVVVLTNST 171 (986)
Q Consensus 151 ~-~~~~--~~~l~~~dvVI~~~~~ 171 (986)
. .+.+ .+.+.++|+||.++..
T Consensus 84 ~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 84 ETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred eCCCHHHHHHHHhcCCEEEECCCC
Confidence 1 1111 2456788988887753
No 197
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.43 E-value=0.77 Score=48.51 Aligned_cols=36 Identities=22% Similarity=0.523 Sum_probs=32.0
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
.|+.++|+|+|+|.+|..+|+.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4788999999999999999999999997 67788754
No 198
>PRK06197 short chain dehydrogenase; Provisional
Probab=92.37 E-value=0.32 Score=54.49 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.2
Q ss_pred HHHHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 457 QEKLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 457 q~~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
...+.+++|+|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~------~vi~~~r~ 49 (306)
T PRK06197 11 IPDQSGRVAVVTGANTGLGYETAAALAAKGA------HVVLAVRN 49 (306)
T ss_pred cccCCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 35678889999996 8999999999999987 78887754
No 199
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=92.35 E-value=0.12 Score=40.86 Aligned_cols=22 Identities=18% Similarity=0.727 Sum_probs=19.3
Q ss_pred ccCCCChhHhHHHHHHHHHHHH
Q psy7300 691 DERPLNIKDCVAWARNHWQDQY 712 (986)
Q Consensus 691 ~~~p~~~~~c~~~a~~~f~~~F 712 (986)
++.|.+.+.||+||+.+|+.+|
T Consensus 23 r~~P~~~~HcI~wAk~~f~~~F 44 (45)
T PF10585_consen 23 RNFPRTPEHCIEWAKDLFEELF 44 (45)
T ss_dssp HTS-SSHHHHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHh
Confidence 4679999999999999999998
No 200
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.33 E-value=0.15 Score=54.96 Aligned_cols=38 Identities=24% Similarity=0.587 Sum_probs=35.4
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCC
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVK--SVTLHDTTA 109 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg--~itlvD~d~ 109 (986)
.+++.+|+|+|+|+.|..+++.|...|++ +|+|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57889999999999999999999999999 999999863
No 201
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=92.30 E-value=0.66 Score=50.99 Aligned_cols=92 Identities=22% Similarity=0.243 Sum_probs=57.8
Q ss_pred CcEEEEec-ChhhHHHHHHHHHc-CCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 463 LKYFVVGA-GAIGCELLKNFAMM-GVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 463 ~~VlvvGa-GgiG~e~lknLa~~-Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
.||.|+|| |.+|..+++.+... ++ --+.++|.+. +...+ + ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~-----elvav~d~~~---~~~~~---~---------------------~~~~i~ 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDL-----ELVAAVDRPG---SPLVG---Q---------------------GALGVA 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCC---ccccc---c---------------------CCCCcc
Confidence 47999999 99999999988753 44 2233456442 11110 0 001111
Q ss_pred EEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTK 598 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~ 598 (986)
.+ .. + ++.+..+|+|++++ .+.+-..+-..|.++|+|++ .|+.|+.
T Consensus 50 ~~-~d--------l-~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vv-igttG~s 95 (257)
T PRK00048 50 IT-DD--------L-EAVLADADVLIDFT-TPEATLENLEFALEHGKPLV-IGTTGFT 95 (257)
T ss_pred cc-CC--------H-HHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEE-EECCCCC
Confidence 00 00 1 23445799999997 66666788899999999999 4466654
No 202
>PLN02206 UDP-glucuronate decarboxylase
Probab=92.26 E-value=0.68 Score=55.03 Aligned_cols=104 Identities=21% Similarity=0.244 Sum_probs=62.9
Q ss_pred hcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 461 GKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 461 ~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
+++||+|.|+ |-||+.+++.|...|. +++++|.+... . +.... ..+ .++ ++
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~------~V~~ld~~~~~----------------~-~~~~~-~~~--~~~--~~ 169 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD------SVIVVDNFFTG----------------R-KENVM-HHF--SNP--NF 169 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC------EEEEEeCCCcc----------------c-hhhhh-hhc--cCC--ce
Confidence 5588999996 8899999999999887 78888753211 0 00000 000 122 23
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCC---------C--------HHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALD---------N--------VEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~D---------n--------~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
+.+..++. +..+.++|+||.+.. + ...-..+-+.|+..++++|..++...+|.
T Consensus 170 ~~i~~D~~--------~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~ 239 (442)
T PLN02206 170 ELIRHDVV--------EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 239 (442)
T ss_pred EEEECCcc--------ChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCC
Confidence 33333332 123457899987652 1 11123456788888889999988765553
No 203
>PRK05854 short chain dehydrogenase; Provisional
Probab=92.23 E-value=0.37 Score=54.36 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=30.4
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.|.+++++|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~------~Vil~~R~ 47 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA------EVILPVRN 47 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 356788999986 8899999999999997 88888654
No 204
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.21 E-value=0.94 Score=55.00 Aligned_cols=108 Identities=13% Similarity=0.209 Sum_probs=62.6
Q ss_pred hcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhh------
Q psy7300 461 GKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVM------ 533 (986)
Q Consensus 461 ~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~------ 533 (986)
.++.|+|.|+ |+||..+++.|+..|. ++++++.+. .|...+.+.+.++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~------~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~G 133 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF------RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEG 133 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHhhhhcccccc
Confidence 4467999997 8999999999999987 787775432 1222222222221
Q ss_pred -CCCceEEEEEcccCCccccccccccccCCCEEEEcCCCH---------------HHHHHHHHHHHHcCC-cEEEEeecC
Q psy7300 534 -NPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNV---------------EARIYMDRRCVYSRK-PLLESGTLG 596 (986)
Q Consensus 534 -np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~---------------~ar~~l~~~c~~~~~-pli~~g~~G 596 (986)
.+..+++.+..++.... .+ ...+.++|+||++.... .+-..+-+.|...++ .+|..++.|
T Consensus 134 a~~~~~v~iV~gDLtD~e-sI--~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig 210 (576)
T PLN03209 134 TQPVEKLEIVECDLEKPD-QI--GPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG 210 (576)
T ss_pred ccccCceEEEEecCCCHH-HH--HHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence 11224556666665322 11 34568899999886421 112334455555553 466665554
No 205
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.20 E-value=0.53 Score=56.18 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=62.3
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 71 RRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 71 ~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
.-+..++|+|+|+|+.|..+|+-|...|. .+++.|...... .....+.|++. .+.+.
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~------------------~~~~~~~l~~~--gi~~~-- 66 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEE------------------LGEVSNELKEL--GVKLV-- 66 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCcc------------------chHHHHHHHhC--CCEEE--
Confidence 34567899999999999999999999997 799998643110 00111234443 23333
Q ss_pred cCCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEE
Q psy7300 151 TGELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALII 191 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~ 191 (986)
.....++.+.++|+||.+.. .+....+-..+++.+||++.
T Consensus 67 ~~~~~~~~~~~~dlVV~Spg-i~~~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 67 LGENYLDKLDGFDVIFKTPS-MRIDSPELVKAKEEGAYITS 106 (458)
T ss_pred eCCCChHHhccCCEEEECCC-CCCCchHHHHHHHcCCcEEe
Confidence 22223456688999998742 22222345567889999874
No 206
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.20 E-value=0.52 Score=51.83 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.1
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.+|.|||+|.+|..++..|...|.. ...+.++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~---~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVP---AKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCC---cceEEEEcC
Confidence 5799999999999999999988841 126777764
No 207
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=92.17 E-value=0.3 Score=47.47 Aligned_cols=98 Identities=19% Similarity=0.153 Sum_probs=57.0
Q ss_pred cEEEEec-ChhhHHHHHHHHH-cCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEE
Q psy7300 464 KYFVVGA-GAIGCELLKNFAM-MGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITY 541 (986)
Q Consensus 464 ~VlvvGa-GgiG~e~lknLa~-~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~ 541 (986)
||.|+|+ |-+|.++++.+.. .|+ -=.-.+|... |. +-..|+| +. +......+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~-----~lv~~v~~~~---~~------~~g~d~g----~~----~~~~~~~~~v-- 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGF-----ELVGAVDRKP---SA------KVGKDVG----EL----AGIGPLGVPV-- 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTE-----EEEEEEETTT---ST------TTTSBCH----HH----CTSST-SSBE--
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC---cc------cccchhh----hh----hCcCCccccc--
Confidence 7999999 9999999999998 555 1233344332 00 1123333 11 1001111111
Q ss_pred EEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q psy7300 542 HENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGT 597 (986)
Q Consensus 542 ~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G~ 597 (986)
..+. ++.+..+|+||+.+ ++++-...-++|.++++|+|-+ |.|+
T Consensus 58 -----~~~l-----~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViG-TTG~ 101 (124)
T PF01113_consen 58 -----TDDL-----EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIG-TTGF 101 (124)
T ss_dssp -----BS-H-----HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE--SSS
T ss_pred -----chhH-----HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEE-CCCC
Confidence 1111 35566699999998 8888888889999999999864 4454
No 208
>KOG4169|consensus
Probab=92.14 E-value=0.38 Score=51.05 Aligned_cols=61 Identities=23% Similarity=0.507 Sum_probs=49.0
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 73 MASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 73 L~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
+..++++++| +||+|-+++|.|...|++.+.+.|.. +| -.+..+|++.||.+++-.+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~----En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE----EN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh----hC-----------------HHHHHHHhccCCCceEEEEE
Confidence 4577888887 99999999999999999988887741 11 23456899999999998887
Q ss_pred CCC
Q psy7300 152 GEL 154 (986)
Q Consensus 152 ~~~ 154 (986)
-++
T Consensus 62 ~DV 64 (261)
T KOG4169|consen 62 CDV 64 (261)
T ss_pred ecc
Confidence 665
No 209
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.07 E-value=0.31 Score=54.28 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=30.5
Q ss_pred HHhcCcEEEEecCh-hhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 459 KLGKLKYFVVGAGA-IGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 459 ~L~~~~VlvvGaGg-iG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
.+.+++|+|+|+|+ +|..++..|...|. .+++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga------tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA------TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC------EEEEEe
Confidence 46788999999999 99999999998887 888886
No 210
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.06 E-value=0.78 Score=49.65 Aligned_cols=82 Identities=12% Similarity=0.242 Sum_probs=49.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC---CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVILSGV---KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLvl~GV---g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
+..+|.|||+|.+|..+++.|...|. ..+.+++... ..|++.+.+. . .+.+ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~------------------~~~~~~~~~~---~--~~~~--~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSN------------------VEKLDQLQAR---Y--NVST--T 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCC------------------HHHHHHHHHH---c--CcEE--e
Confidence 45789999999999999999998873 2243443210 1233333222 1 1222 1
Q ss_pred cCCCCHhhhccccEEEEecCCHHHHHHHHHHH
Q psy7300 151 TGELSEAFIKKFRVVVLTNSTYDEQLAISQIT 182 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c 182 (986)
. + ..+.++++|+||.|+.+......+.++.
T Consensus 58 ~-~-~~~~~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 58 T-D-WKQHVTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred C-C-hHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence 1 2 2456788999999997765554444443
No 211
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=91.99 E-value=0.91 Score=51.60 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=31.0
Q ss_pred HHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 458 EKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 458 ~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
..|++++|.|||+|.+|..++++|..+|+ ++++.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~------~Vvv~~ 47 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV------DVVVGL 47 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC------EEEEEE
Confidence 56888999999999999999999999988 777655
No 212
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.96 E-value=0.23 Score=55.84 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=62.3
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHh-hCCCceEEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKV-MNPNVNITYH 542 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~-~np~~~i~~~ 542 (986)
+|.|||+|.+|+.++++|+..|. +++++|.+.=...-+..+ |-..+....+.... -.+++-+.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~------~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~v 67 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH------DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMV 67 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC------EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEc
Confidence 69999999999999999999998 889988764221111111 10000111111111 1244444443
Q ss_pred EcccCCccccccc--cccccCCCEEEEcCCC-HHHHHHHHHHHHHcCCcEEEEeecCC
Q psy7300 543 ENRVGPETEKVYD--DLFFESLDGIANALDN-VEARIYMDRRCVYSRKPLLESGTLGT 597 (986)
Q Consensus 543 ~~~v~~~~~~~~~--~~f~~~~DvVi~a~Dn-~~ar~~l~~~c~~~~~pli~~g~~G~ 597 (986)
..... ..+++ ...+..=++||++... +..-..+...+...+++++++++.|.
T Consensus 68 p~~~~---~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg 122 (298)
T TIGR00872 68 PHGIV---DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGG 122 (298)
T ss_pred CchHH---HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCC
Confidence 33211 11110 1123344677777544 23333445566677788888877763
No 213
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.93 E-value=0.46 Score=53.07 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.3
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
++|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY------DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999998 899999765
No 214
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.87 E-value=0.52 Score=53.16 Aligned_cols=33 Identities=30% Similarity=0.254 Sum_probs=29.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
..+|+|+|+|++|+-++-.|.++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999996 79999874
No 215
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=91.78 E-value=0.52 Score=51.79 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=51.1
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
+..++++|-|| ||||-|+++.||+-|. ++++|-.+ +.|-+.+++.+...+ .++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~------~liLvaR~-------------------~~kL~~la~~l~~~~-~v~ 57 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY------NLILVARR-------------------EDKLEALAKELEDKT-GVE 57 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCc-------------------HHHHHHHHHHHHHhh-Cce
Confidence 46778999998 8999999999999998 89887532 367778888888877 778
Q ss_pred EEEEEcccCC
Q psy7300 539 ITYHENRVGP 548 (986)
Q Consensus 539 i~~~~~~v~~ 548 (986)
++.+..++..
T Consensus 58 v~vi~~DLs~ 67 (265)
T COG0300 58 VEVIPADLSD 67 (265)
T ss_pred EEEEECcCCC
Confidence 8888777764
No 216
>PLN00203 glutamyl-tRNA reductase
Probab=91.76 E-value=0.26 Score=59.45 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=31.3
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
|.+++|+|||+|.+|..++++|...|+ .+|++++.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-----~~V~V~nR 298 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-----TKMVVVNR 298 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-----CeEEEEeC
Confidence 567899999999999999999999998 68999764
No 217
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.75 E-value=0.44 Score=49.80 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=53.6
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCc
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNV 537 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~ 537 (986)
.+++++++|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.... ..
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~------~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~ 78 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA------RVVLVGRD-------------------LERAQKAADSLRARF-GE 78 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcCC-------------------HHHHHHHHHHHHhhc-CC
Confidence 467889999996 9999999999998875 88888643 234555555554322 23
Q ss_pred eEEEEEcccCCccccccccccccCCCEEEEcCCCHH
Q psy7300 538 NITYHENRVGPETEKVYDDLFFESLDGIANALDNVE 573 (986)
Q Consensus 538 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ 573 (986)
.+.... ..+ .++. .+.+.++|+||+|+-...
T Consensus 79 ~~~~~~--~~~-~~~~--~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 79 GVGAVE--TSD-DAAR--AAAIKGADVVFAAGAAGV 109 (194)
T ss_pred cEEEee--CCC-HHHH--HHHHhcCCEEEECCCCCc
Confidence 333321 111 1111 256688999999976443
No 218
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.70 E-value=0.34 Score=54.42 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=70.8
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhh-CCCceEEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVM-NPNVNITYH 542 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~-np~~~i~~~ 542 (986)
+|.+||+|.+|+.++++|+..|. +++++|.+.-....+. +.|-.-+....+.+... ++++-+...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~------~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH------EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC------eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEe
Confidence 69999999999999999999987 8999987642211110 11211122223333332 355555554
Q ss_pred EcccCCccccccc--cccccCCCEEEEcCC-CHHHHHHHHHHHHHcCCcEEEEeecCC
Q psy7300 543 ENRVGPETEKVYD--DLFFESLDGIANALD-NVEARIYMDRRCVYSRKPLLESGTLGT 597 (986)
Q Consensus 543 ~~~v~~~~~~~~~--~~f~~~~DvVi~a~D-n~~ar~~l~~~c~~~~~pli~~g~~G~ 597 (986)
...- ..+..++ ...+..-++||++.- ++..-+.+.+.+...++-++++.+.|.
T Consensus 68 ~~~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 68 PAGE--ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred cCCc--HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 4320 1111111 122344578888743 454555677888899999999988875
No 219
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=91.70 E-value=0.35 Score=57.16 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=52.7
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+.+.+|+|+|+|++|..+++.|...|+..+++++.+. .|++.+++.+. ..+... .
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~g-----~~~~~~-~ 234 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEFG-----GEAIPL-D 234 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHcC-----CcEeeH-H
Confidence 6789999999999999999999999999999988642 24444444432 111111 1
Q ss_pred CCCHhhhccccEEEEecCCHH
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYD 173 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~ 173 (986)
+ ..+.+.++|+||.|+.+..
T Consensus 235 ~-~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 235 E-LPEALAEADIVISSTGAPH 254 (423)
T ss_pred H-HHHHhccCCEEEECCCCCC
Confidence 1 1345678999999986543
No 220
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.65 E-value=0.48 Score=53.79 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=32.2
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
++.+|.|||+|.+|+.++-.|++.|+..+.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 56799999999999999999999998889999964
No 221
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=91.60 E-value=0.69 Score=52.12 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=33.2
Q ss_pred HHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 457 QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 457 q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
.+.|++++|.|||.|.+|..++++|..+|+ ++++.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~------~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV------EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC------EEEEEE
Confidence 468999999999999999999999999999 888876
No 222
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.56 E-value=0.63 Score=52.73 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=30.8
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
+..||.|+|||.+|+.++-.|+..|+. ..|.|+|-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~----~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIA----DELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 346999999999999999999999985 58999974
No 223
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.56 E-value=0.5 Score=59.52 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=85.2
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccc--------cCccccCcCCCCCCCcHHHHHHHHHHhhC
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKS--------NLNRQFLFRPHDVQQPKSATAAKAIKVMN 534 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~s--------NLnRqflf~~~diG~~Ka~~a~~~l~~~n 534 (986)
++|.|||+|.+|+.++-.+++.|+ .++++|.+.=... +|.++. .-|+.....+.+.+.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~~l~~~~-----~~g~~~~~~~~~~~~~i~ 382 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV------PVIMKDINQKALDLGMTEAAKLLNKQV-----ERGKIDGAKMAGVLSSIR 382 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHHHHHHH-----HcCCCChhhHHHHHhCeE
Confidence 579999999999999999999999 9999996642211 111111 122222222222222221
Q ss_pred CCceEEEEEcccCCccccccccccccCCCEEEEcC-CCHHHHHHHHHHHHHcCC--cEEEEeecCCc-ceEEEEeCCCCc
Q psy7300 535 PNVNITYHENRVGPETEKVYDDLFFESLDGIANAL-DNVEARIYMDRRCVYSRK--PLLESGTLGTK-GNSQVVVPHLTE 610 (986)
Q Consensus 535 p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~-Dn~~ar~~l~~~c~~~~~--pli~~g~~G~~-G~v~~~~p~~t~ 610 (986)
.. . .+ +-+.++|+||.|+ .+.+.++.+-...-..-. .+|-+-|+++. ..+.-..++..-
T Consensus 383 ------~~-~--------~~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r 445 (715)
T PRK11730 383 ------PT-L--------DY--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPEN 445 (715)
T ss_pred ------Ee-C--------CH--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCcc
Confidence 11 0 11 2258999999874 567777755544444333 36666666542 000001111112
Q ss_pred cccCCCCCCCCCCCcccccCCCCcchhhHHHHHHHhhhH
Q psy7300 611 SYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGI 649 (986)
Q Consensus 611 cy~c~~~~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~ 649 (986)
+...+--.|....|...+-.-+.+-..+++++.+++..+
T Consensus 446 ~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~l 484 (715)
T PRK11730 446 FCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKM 484 (715)
T ss_pred EEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 222222223334455555555666677778777765543
No 224
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.49 E-value=0.56 Score=56.26 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=63.5
Q ss_pred HHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCE
Q psy7300 67 HDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVS 146 (986)
Q Consensus 67 ~~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~ 146 (986)
.+...-++.++|+|+|+|+.|..+|+.|...|. .+++.|.+. .+. .+.+.++ .+.
T Consensus 7 ~~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~-------------------~~~---~~~l~~~--gi~ 61 (473)
T PRK00141 7 LSALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNE-------------------TAR---HKLIEVT--GVA 61 (473)
T ss_pred hhhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCh-------------------HHH---HHHHHhc--CcE
Confidence 445556777899999999999999999999998 899988531 011 1112222 333
Q ss_pred EEeecCCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEee
Q psy7300 147 TKAYTGELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIAD 193 (986)
Q Consensus 147 v~~~~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~ 193 (986)
+ +...-.++.+.++|+||.+..=.. ....-..+++.+||++.-.
T Consensus 62 ~--~~~~~~~~~~~~~d~vV~Spgi~~-~~p~~~~a~~~gi~v~~~~ 105 (473)
T PRK00141 62 D--ISTAEASDQLDSFSLVVTSPGWRP-DSPLLVDAQSQGLEVIGDV 105 (473)
T ss_pred E--EeCCCchhHhcCCCEEEeCCCCCC-CCHHHHHHHHCCCceeeHH
Confidence 3 223223455678999987652111 1123446788999988643
No 225
>PLN02206 UDP-glucuronate decarboxylase
Probab=91.47 E-value=0.87 Score=54.12 Aligned_cols=103 Identities=16% Similarity=0.242 Sum_probs=64.1
Q ss_pred hcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 74 ASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 74 ~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+..+|||.| .|-+|+.+++.|...|. +++.+|..... . .+.....+ .++ .++.+..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~----------------~--~~~~~~~~--~~~--~~~~i~~ 174 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG----------------R--KENVMHHF--SNP--NFELIRH 174 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc----------------c--hhhhhhhc--cCC--ceEEEEC
Confidence 457899999 58899999999999996 57777643211 0 00000111 122 2333444
Q ss_pred CCCHhhhccccEEEEecC---------CHH--------HHHHHHHHHHHcCCcEEEeecccceE
Q psy7300 153 ELSEAFIKKFRVVVLTNS---------TYD--------EQLAISQITHANDIALIIADTRGLFA 199 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~---------~~~--------~~~~i~~~c~~~~ip~I~~~~~G~~G 199 (986)
++.+..+.++|+||-+.. +.. .-..+-+.|++.+++||++++...||
T Consensus 175 D~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg 238 (442)
T PLN02206 175 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 238 (442)
T ss_pred CccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhC
Confidence 444445567898886542 111 12356678999999999999887665
No 226
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.45 E-value=0.78 Score=51.80 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=29.2
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
||.|||+|.+|+.+|-.|+..|+. ++|.|+|-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~----~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF----SEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 689999999999999999999985 68999983
No 227
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.37 E-value=0.56 Score=52.72 Aligned_cols=111 Identities=18% Similarity=0.310 Sum_probs=68.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhc-CCCCEEEeecCC-C
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQL-NPYVSTKAYTGE-L 154 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~l-Np~V~v~~~~~~-~ 154 (986)
+|.|||+|.+|+.+|++|...|. +++++|.+.-....+. +.|-.-+....+.++.. ++++-+...... .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 6889987542211110 01111111112222322 355555554433 1
Q ss_pred CH----h---hhccccEEEEec-CCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 155 SE----A---FIKKFRVVVLTN-STYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 155 ~~----~---~l~~~dvVI~~~-~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
.. . .++.-++||++. .++....++.+.+++.++.|+.+.+.|
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG 122 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSG 122 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCc
Confidence 11 1 233446788774 455566677888999999999888777
No 228
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.34 E-value=1.1 Score=53.16 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=61.6
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
++|+|+|+|.+|..+++.|...|. .++++|.|.= +++ .+++ ...+..+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~------~v~vid~~~~-------------------~~~----~~~~---~~~~~~~ 48 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN------DVTVIDTDEE-------------------RLR----RLQD---RLDVRTV 48 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------cEEEEECCHH-------------------HHH----HHHh---hcCEEEE
Confidence 379999999999999999999887 8899986431 111 1111 1123344
Q ss_pred EcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHc-CCcEEEE
Q psy7300 543 ENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYS-RKPLLES 592 (986)
Q Consensus 543 ~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~-~~pli~~ 592 (986)
..+... ...+...-+.++|.|+.++++...-..+-..|+.. +.+-+-+
T Consensus 49 ~gd~~~--~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 49 VGNGSS--PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EeCCCC--HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 333321 11222223678999999999887777777777775 5543333
No 229
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.34 E-value=1.3 Score=50.67 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=60.0
Q ss_pred CcEEEEec-ChhhHHHHHHHHHc-CCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 463 LKYFVVGA-GAIGCELLKNFAMM-GVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 463 ~~VlvvGa-GgiG~e~lknLa~~-Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
++|+|.|+ |-||+.+++.|... |. +++.+|...- ++. .+.+.-.++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~------~V~~~~r~~~---~~~-----------------------~~~~~~~~~ 49 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW------EVYGMDMQTD---RLG-----------------------DLVNHPRMH 49 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC------eEEEEeCcHH---HHH-----------------------HhccCCCeE
Confidence 47999997 88999999999875 45 7888774321 110 111112244
Q ss_pred EEEcccCCccccccccccccCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCcEEEEeecCCcc
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANALD-----------------NVEARIYMDRRCVYSRKPLLESGTLGTKG 599 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~D-----------------n~~ar~~l~~~c~~~~~pli~~g~~G~~G 599 (986)
.+..++....+ .+ ...++++|+||.+.- |+.+-+.+-+.|++.++.+|..++.+.+|
T Consensus 50 ~~~~Dl~~~~~-~~-~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg 123 (347)
T PRK11908 50 FFEGDITINKE-WI-EYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG 123 (347)
T ss_pred EEeCCCCCCHH-HH-HHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence 44444431111 11 234456777775421 12223355667778888999988876554
No 230
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.15 E-value=0.43 Score=48.97 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=31.4
Q ss_pred HhhcCcEEEEcCChh-HHHHHHHHHHhCCCeEEEEeC
Q psy7300 72 RMASSDVLISGLGGL-GVEIAKNVILSGVKSVTLHDT 107 (986)
Q Consensus 72 kL~~s~VlIiG~ggl-GseiaknLvl~GVg~itlvD~ 107 (986)
.|.+++|+|+|.|.. |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 578999999999985 8889999999999 6998885
No 231
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.10 E-value=1.2 Score=49.41 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTA 109 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~ 109 (986)
.+|.|||+|-+|..+|..|+.+|. .++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 579999999999999999999998 799998643
No 232
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.09 E-value=0.49 Score=55.44 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=32.1
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
+.+.+|+|+|+|.+|..+++.+..+|. +++++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga------~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA------RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEECCh
Confidence 578899999999999999999999998 788888664
No 233
>PRK09242 tropinone reductase; Provisional
Probab=91.06 E-value=0.91 Score=49.19 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=46.7
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCc
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNV 537 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~ 537 (986)
++.+++++|+|+ |+||.++++.|+..|. ++++++.+. .+.+.+.+.+...+|..
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~------~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~ 60 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA------DVLIVARDA-------------------DALAQARDELAEEFPER 60 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCC
Confidence 367789999996 8999999999999987 888887431 23344555565666666
Q ss_pred eEEEEEcccC
Q psy7300 538 NITYHENRVG 547 (986)
Q Consensus 538 ~i~~~~~~v~ 547 (986)
++..+..++.
T Consensus 61 ~~~~~~~Dl~ 70 (257)
T PRK09242 61 EVHGLAADVS 70 (257)
T ss_pred eEEEEECCCC
Confidence 7776666654
No 234
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.04 E-value=0.65 Score=52.77 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=31.6
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
++..||.|||+|.+|+.++-.++..|+ ..+.++|-+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-----~~i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-----GDVVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeCCC
Confidence 455799999999999999999999997 3699998543
No 235
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=91.02 E-value=0.24 Score=56.03 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=58.0
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
.+.+++|.|||.|.||.++++.|...|+ ++..+|... + .. +.+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~------~V~~~~~~~--------~-----~~-----------------~~~- 175 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGF------PLRCWSRSR--------K-----SW-----------------PGV- 175 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCC--------C-----CC-----------------CCc-
Confidence 3567899999999999999999998888 888887421 0 00 000
Q ss_pred EEEEEcccCCccccccccccccCCCEEEEcCC-CHHHHHHHHHHHHH---cCCcEEEEe
Q psy7300 539 ITYHENRVGPETEKVYDDLFFESLDGIANALD-NVEARIYMDRRCVY---SRKPLLESG 593 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~D-n~~ar~~l~~~c~~---~~~pli~~g 593 (986)
.... ... .. ++++.++|+|+.++- +.+++..++.--.. .+.-+|+.|
T Consensus 176 -~~~~---~~~--~l--~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 176 -QSFA---GRE--EL--SAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred -eeec---ccc--cH--HHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 0000 000 01 467889999987765 56777777754333 233467766
No 236
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.01 E-value=0.51 Score=44.68 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=57.7
Q ss_pred EEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEEc
Q psy7300 465 YFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHEN 544 (986)
Q Consensus 465 VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~~ 544 (986)
|+|+|+|.+|-++++.|...|. .++++|.|.-. .+.++... +..+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~------~vvvid~d~~~-----------------------~~~~~~~~----~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI------DVVVIDRDPER-----------------------VEELREEG----VEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS------EEEEEESSHHH-----------------------HHHHHHTT----SEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCC------EEEEEECCcHH-----------------------HHHHHhcc----cccccc
Confidence 6899999999999999999665 89999987622 12222222 224444
Q ss_pred ccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHH
Q psy7300 545 RVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVY 584 (986)
Q Consensus 545 ~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~ 584 (986)
+... ...+...-+++++.|+.++++......+-..++.
T Consensus 48 d~~~--~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 48 DATD--PEVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp -TTS--HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred cchh--hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 4332 2233344567899999999998887788777776
No 237
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.01 E-value=0.41 Score=54.01 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=30.2
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
.+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~------~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH------EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC------eeEEEeCCH
Confidence 369999999999999999999998 899999774
No 238
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.99 E-value=0.77 Score=55.07 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=60.7
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+...+|+|+|.|++|.++|..|...|. +++++|.... ..+....+.|++. .+.+..-..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~--gv~~~~~~~ 72 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD------------------ERHRALAAILEAL--GATVRLGPG 72 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------hhhHHHHHHHHHc--CCEEEECCC
Confidence 457799999999999999999999997 5999986421 1223344556555 344432111
Q ss_pred CCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEE
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALII 191 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~ 191 (986)
.. ....+|+||.+..-.+ ...+-..+++.|+|++.
T Consensus 73 -~~--~~~~~D~Vv~s~Gi~~-~~~~~~~a~~~gi~v~~ 107 (480)
T PRK01438 73 -PT--LPEDTDLVVTSPGWRP-DAPLLAAAADAGIPVWG 107 (480)
T ss_pred -cc--ccCCCCEEEECCCcCC-CCHHHHHHHHCCCeecc
Confidence 11 3457899998764222 12234556788999864
No 239
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=90.96 E-value=0.7 Score=52.64 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=56.3
Q ss_pred cCcEEEEcCChhHHHHHHHHH-HhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVI-LSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLv-l~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
.++|+|+|+|+.|...++.|. ..|+.+++|++.+. .|++..++++++..+ +++.... +
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~-------------------~~a~~~a~~~~~~~g-~~v~~~~-~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDS-------------------AKAEALALQLSSLLG-IDVTAAT-D 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEeC-C
Confidence 468999999999999999997 57899999997532 478888888765432 4444322 1
Q ss_pred CCHhhhccccEEEEecCC
Q psy7300 154 LSEAFIKKFRVVVLTNST 171 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~~ 171 (986)
.++.+.++|+||.|+.+
T Consensus 188 -~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 -PRAAMSGADIIVTTTPS 204 (326)
T ss_pred -HHHHhccCCEEEEecCC
Confidence 24567899999999865
No 240
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.85 E-value=0.65 Score=52.36 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=30.0
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
..+|.|+|+|.+|+.+++.|+..|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4689999999999999999999997 89999865
No 241
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.78 E-value=0.41 Score=60.28 Aligned_cols=160 Identities=15% Similarity=0.162 Sum_probs=90.3
Q ss_pred CcEEEEecChhhHHHHHHHH-HcCCCcCCCCeEEEEeCCccccccCcccc------CcCCCCCCCcHHHHHHHHHHhhCC
Q psy7300 463 LKYFVVGAGAIGCELLKNFA-MMGVGAGPGGQIFVTDMDLIEKSNLNRQF------LFRPHDVQQPKSATAAKAIKVMNP 535 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa-~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqf------lf~~~diG~~Ka~~a~~~l~~~np 535 (986)
++|.|||+|-+|+.++-.++ +.|+ .++++|.+. ..+.|-. +=..-.-|+...+.+.+.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~------~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---- 376 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL------PVRIKDINP---QGINHALKYSWDLLDKKVKRRHLKPSERDKQMA---- 376 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC------eEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh----
Confidence 67999999999999999999 8899 999999764 1122100 00000111111111111111
Q ss_pred CceEEEEEcccCCccccccccccccCCCEEEEcC-CCHHHHHHHHHHHHHcCC--cEEEEeecCCc-ceEEEEeCCCCcc
Q psy7300 536 NVNITYHENRVGPETEKVYDDLFFESLDGIANAL-DNVEARIYMDRRCVYSRK--PLLESGTLGTK-GNSQVVVPHLTES 611 (986)
Q Consensus 536 ~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~-Dn~~ar~~l~~~c~~~~~--pli~~g~~G~~-G~v~~~~p~~t~c 611 (986)
+|+... .+ +-+.++|+||.|+ .+.+.++.+-...-.+-. .+|-+-|++.. ..+.-..++..-+
T Consensus 377 --~i~~~~---------~~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ 443 (708)
T PRK11154 377 --LISGTT---------DY--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQV 443 (708)
T ss_pred --cEEEeC---------Ch--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccce
Confidence 121111 01 2358999999874 567777766655555444 37777666643 1111111111223
Q ss_pred ccCCCCCCCCCCCcccccCCCCcchhhHHHHHHHhhh
Q psy7300 612 YSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEG 648 (986)
Q Consensus 612 y~c~~~~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~ 648 (986)
...+--.|....|.+.+-.-|.+-..+++++.++...
T Consensus 444 ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~ 480 (708)
T PRK11154 444 IGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKK 480 (708)
T ss_pred EEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333333445567777777888888888888887655
No 242
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.77 E-value=0.28 Score=44.86 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=55.1
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEE-eCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVT-DMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~iv-D~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
||.++|+|.+|..+++.|+..|+ ...++.++ +.+. +.+ +.+.+..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~----------------------~~~-~~~~~~~~-~~~~~~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSP----------------------EKA-AELAKEYG-VQATAD 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSH----------------------HHH-HHHHHHCT-TEEESE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcH----------------------HHH-HHHHHhhc-cccccC
Confidence 68999999999999999999995 12477755 5332 112 22222222 121110
Q ss_pred EcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHH-HHHcCCcEEEE
Q psy7300 543 ENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRR-CVYSRKPLLES 592 (986)
Q Consensus 543 ~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~-c~~~~~pli~~ 592 (986)
+ +.+..+..|+||.|+........+... ....++-+|+.
T Consensus 54 -------~----~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 54 -------D----NEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp -------E----HHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred -------C----hHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence 0 145677899999999887777766666 33455555553
No 243
>PRK06141 ornithine cyclodeaminase; Validated
Probab=90.76 E-value=0.83 Score=51.74 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=57.0
Q ss_pred HHHhhcCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEE
Q psy7300 70 MRRMASSDVLISGLGGLGVEIAKNVIL-SGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTK 148 (986)
Q Consensus 70 q~kL~~s~VlIiG~gglGseiaknLvl-~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~ 148 (986)
..+...++|+|+|+|+.|..+++.+.+ .|+.++++++.+ ..|++..++.+++... .+.
T Consensus 120 La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~ 178 (314)
T PRK06141 120 LARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAE 178 (314)
T ss_pred hCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceE
Confidence 334457899999999999999987665 688999999853 3577888888776422 233
Q ss_pred eecCCCCHhhhccccEEEEecCC
Q psy7300 149 AYTGELSEAFIKKFRVVVLTNST 171 (986)
Q Consensus 149 ~~~~~~~~~~l~~~dvVI~~~~~ 171 (986)
... + .++.+.++|+||.|+.+
T Consensus 179 ~~~-~-~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 179 VVT-D-LEAAVRQADIISCATLS 199 (314)
T ss_pred EeC-C-HHHHHhcCCEEEEeeCC
Confidence 321 1 24567899999988865
No 244
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=90.61 E-value=0.91 Score=53.86 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=62.4
Q ss_pred hcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccc-cccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 461 GKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIE-KSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 461 ~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie-~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
+.+||+|.|+ |-||+.+++.|...|. +++++|.+... ..++ ........
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~------~V~~ldr~~~~~~~~~-----------------------~~~~~~~~ 169 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD------EVIVIDNFFTGRKENL-----------------------VHLFGNPR 169 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCCCCccHhHh-----------------------hhhccCCc
Confidence 3458999996 8899999999999887 89988854311 0000 00111112
Q ss_pred EEEEEcccCCccccccccccccCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 539 ITYHENRVGPETEKVYDDLFFESLDGIANALD-----------------NVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~D-----------------n~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
++....++. +..+.++|+||.+.- |+.+-..+-+.|.++++.+|..++...+|.
T Consensus 170 ~~~~~~Di~--------~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~ 240 (436)
T PLN02166 170 FELIRHDVV--------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGD 240 (436)
T ss_pred eEEEECccc--------cccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCC
Confidence 333333321 123457899887652 122224455778888888999888765553
No 245
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.52 E-value=1.5 Score=49.04 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=28.2
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
+|+|+|+|++|+.+|..|..+|. .++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 69999999999999999999994 79999863
No 246
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.52 E-value=0.96 Score=51.21 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=30.5
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
..||.|||||.+|+.++-.|++.|++ .+|.|+|-
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~----~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA----DELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 45899999999999999999999985 68999984
No 247
>PRK08618 ornithine cyclodeaminase; Validated
Probab=90.52 E-value=0.73 Score=52.44 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=52.1
Q ss_pred hcCcEEEEecChhhHHHHHHHH-HcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFA-MMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa-~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
..++++|+|+|+.|...+..++ ..|+ .++.|+|.+ ..|++.+++.+.... .+++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~ 180 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDI-----ERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEI 180 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCc-----cEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcE
Confidence 5678999999999998888775 4577 689998644 245666666665432 2333
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCCCH
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALDNV 572 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~ 572 (986)
..+.. . .+.+.++|+|++|+-+.
T Consensus 181 ~~~~~-----~-----~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 181 YVVNS-----A-----DEAIEEADIIVTVTNAK 203 (325)
T ss_pred EEeCC-----H-----HHHHhcCCEEEEccCCC
Confidence 33211 0 24568899999998754
No 248
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=90.48 E-value=1.8 Score=52.06 Aligned_cols=116 Identities=12% Similarity=0.183 Sum_probs=73.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCch---HHHHHHHHHhhc-CCCCEEEeec
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRN---RAEVSHTNLSQL-NPYVSTKAYT 151 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~---Ka~a~~~~L~~l-Np~V~v~~~~ 151 (986)
++|.+||+|-.|+.+|+||+..|. +++++|.+.-....+...+ ..-|.. -+....+..+.+ .|.+-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~~----~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA----KKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHhh----hhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999997 7999986532111111000 000110 111222333332 3566665554
Q ss_pred CCCC-H----h---hhccccEEEEecC-CHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 152 GELS-E----A---FIKKFRVVVLTNS-TYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 152 ~~~~-~----~---~l~~~dvVI~~~~-~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
..-. + . .+..-|+||++.- +++.-.++.+.+.++|+.|+.+.+.|
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSG 135 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSG 135 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcC
Confidence 3321 1 1 2345689998875 46677788899999999999999888
No 249
>PRK08618 ornithine cyclodeaminase; Validated
Probab=90.44 E-value=0.94 Score=51.57 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=57.2
Q ss_pred hhcCcEEEEcCChhHHHHHHHHH-HhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVI-LSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLv-l~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
-...+|+|+|+|+.|...+..+. ..|+++++++|.+ ..|++...+.+++.. .+++....
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~~ 184 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVVN 184 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEeC
Confidence 34678999999999998888775 5799999999864 247777777776543 23443332
Q ss_pred CCCCHhhhccccEEEEecCCHH
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYD 173 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~ 173 (986)
+ .++.+.+.|+||.|+.+..
T Consensus 185 ~--~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 185 S--ADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred C--HHHHHhcCCEEEEccCCCC
Confidence 1 2456789999999997653
No 250
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.34 E-value=1.2 Score=52.72 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=62.8
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
+...+|+|+|+|.+|..+++.|...|. .++++|.|.= +. +.+++..+++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~------~v~vid~~~~-------------------~~----~~~~~~~~~~~- 278 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY------SVKLIERDPE-------------------RA----EELAEELPNTL- 278 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCHH-------------------HH----HHHHHHCCCCe-
Confidence 356889999999999999999999887 8999986641 11 12222223332
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCc
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKP 588 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~p 588 (986)
.+..+... ...+...-++++|.|+.++++......+...|+..+.+
T Consensus 279 -~i~gd~~~--~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 279 -VLHGDGTD--QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK 324 (453)
T ss_pred -EEECCCCC--HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence 23333221 12222344678999999998877777776777766543
No 251
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.33 E-value=2.4 Score=43.28 Aligned_cols=91 Identities=23% Similarity=0.365 Sum_probs=59.9
Q ss_pred EEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC-C
Q psy7300 78 VLISGL-GGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL-S 155 (986)
Q Consensus 78 VlIiG~-gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~-~ 155 (986)
|+|+|+ |.+|..+++.|+..| .+++.+=.+. .|.+. .+.+++. ..++ +
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~-------------------~~~~~--------~~~~~~~--~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSP-------------------SKAED--------SPGVEII--QGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG-------------------GGHHH--------CTTEEEE--ESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCc-------------------hhccc--------ccccccc--eeeehh
Confidence 799997 899999999999999 5666644221 12221 4454443 3333 2
Q ss_pred H----hhhccccEEEEecCC----HHHHHHHHHHHHHcCCc-EEEeecccce
Q psy7300 156 E----AFIKKFRVVVLTNST----YDEQLAISQITHANDIA-LIIADTRGLF 198 (986)
Q Consensus 156 ~----~~l~~~dvVI~~~~~----~~~~~~i~~~c~~~~ip-~I~~~~~G~~ 198 (986)
. +.++++|.||.+... ......+.+.|++.+++ +|..++.|.+
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~ 102 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVY 102 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGT
T ss_pred hhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccccC
Confidence 2 346789999998742 33455777888888886 5666666643
No 252
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.31 E-value=0.59 Score=54.14 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=54.9
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
.|.+++|.|||+|.||+.+++.|...|+ ++..+|+-.-+. .+.+. ...+.++-+...
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~------~V~~~dp~~~~~-----------~~~~~------~~~L~ell~~sD 169 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI------KTLLCDPPRADR-----------GDEGD------FRSLDELVQEAD 169 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCccccc-----------ccccc------cCCHHHHHhhCC
Confidence 5789999999999999999999999998 888888532110 00010 012333334455
Q ss_pred EEEEEcccCCc----cccccccccccCC---CEEEEc
Q psy7300 539 ITYHENRVGPE----TEKVYDDLFFESL---DGIANA 568 (986)
Q Consensus 539 i~~~~~~v~~~----~~~~~~~~f~~~~---DvVi~a 568 (986)
|...+..+.++ |...++.++|... -++||+
T Consensus 170 iI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 170 ILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred EEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 66655555543 5556666665543 366665
No 253
>PLN02427 UDP-apiose/xylose synthase
Probab=90.26 E-value=1.2 Score=51.67 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=64.7
Q ss_pred HHHhcCcEEEEec-ChhhHHHHHHHHHcC-CCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCC
Q psy7300 458 EKLGKLKYFVVGA-GAIGCELLKNFAMMG-VGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNP 535 (986)
Q Consensus 458 ~~L~~~~VlvvGa-GgiG~e~lknLa~~G-v~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np 535 (986)
++++.++|+|.|+ |-||+.+++.|+..| . +++.+|...- .+. +. +. .+.. ...+
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~------~V~~l~r~~~---~~~-~l-~~---~~~~----------~~~~ 65 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPH------KVLALDVYND---KIK-HL-LE---PDTV----------PWSG 65 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCC------EEEEEecCch---hhh-hh-hc---cccc----------cCCC
Confidence 3566789999996 889999999999874 5 7888874321 000 00 00 0000 0011
Q ss_pred CceEEEEEcccCCccccccccccccCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy7300 536 NVNITYHENRVGPETEKVYDDLFFESLDGIANALDN-----------------VEARIYMDRRCVYSRKPLLESGTLGTK 598 (986)
Q Consensus 536 ~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn-----------------~~ar~~l~~~c~~~~~pli~~g~~G~~ 598 (986)
+++.+..++.... .+ ...++++|+||.+.-- ...-..+-+.|...++.+|..++...+
T Consensus 66 --~~~~~~~Dl~d~~--~l-~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vY 140 (386)
T PLN02427 66 --RIQFHRINIKHDS--RL-EGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVY 140 (386)
T ss_pred --CeEEEEcCCCChH--HH-HHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeee
Confidence 2444544554221 11 2455678888875421 111123345677778889999887766
Q ss_pred ce
Q psy7300 599 GN 600 (986)
Q Consensus 599 G~ 600 (986)
|.
T Consensus 141 g~ 142 (386)
T PLN02427 141 GK 142 (386)
T ss_pred CC
Confidence 64
No 254
>PRK07340 ornithine cyclodeaminase; Validated
Probab=90.09 E-value=0.79 Score=51.68 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=57.8
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVIL-SGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl-~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
+....+|+|+|+|+.|...++.+.. .|+.++.++|.+ ..|++..++++++.+. .+.
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~-- 178 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE-- 178 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--
Confidence 3456899999999999999999974 688999999864 3478888888876532 232
Q ss_pred cCCCCHhhhccccEEEEecCCH
Q psy7300 151 TGELSEAFIKKFRVVVLTNSTY 172 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~~~ 172 (986)
..+ .++.+.++|+||.|+.+.
T Consensus 179 ~~~-~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 179 PLD-GEAIPEAVDLVVTATTSR 199 (304)
T ss_pred ECC-HHHHhhcCCEEEEccCCC
Confidence 122 245678999999998763
No 255
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.06 E-value=3 Score=42.60 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=59.9
Q ss_pred EEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEE
Q psy7300 465 YFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHE 543 (986)
Q Consensus 465 VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~ 543 (986)
|+|+|+ |.+|..+++.|...|. +++.+= |. ..|.+. .+. ++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~------~V~~~~----------R~---------~~~~~~--------~~~--~~~~~ 45 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH------EVTALV----------RS---------PSKAED--------SPG--VEIIQ 45 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS------EEEEEE----------SS---------GGGHHH--------CTT--EEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC------EEEEEe----------cC---------chhccc--------ccc--cccce
Confidence 789998 9999999999999997 777752 21 112222 444 55555
Q ss_pred cccCCccccccccccccCCCEEEEcCCC----HHHHHHHHHHHHHcCCc-EEEEeecC
Q psy7300 544 NRVGPETEKVYDDLFFESLDGIANALDN----VEARIYMDRRCVYSRKP-LLESGTLG 596 (986)
Q Consensus 544 ~~v~~~~~~~~~~~f~~~~DvVi~a~Dn----~~ar~~l~~~c~~~~~p-li~~g~~G 596 (986)
.++.+.. .+ ...+.++|.|+.++.. ...-..+-+.|...+++ +|..++.|
T Consensus 46 ~d~~d~~-~~--~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 46 GDLFDPD-SV--KAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp SCTTCHH-HH--HHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred eeehhhh-hh--hhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence 5554321 11 3567799999999853 33334666777777776 44444444
No 256
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.04 E-value=0.84 Score=50.48 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=48.1
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
..++|+|+|+||+|..++..|...|. +++++|.+ ..|++.+++.+.... .+. .. .
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~~-~~~--~~--~ 170 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRYG-EIQ--AF--S 170 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhcC-ceE--Ee--c
Confidence 46789999999999999999999996 89998742 236666666664432 111 11 1
Q ss_pred CCHhhhccccEEEEecC
Q psy7300 154 LSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~ 170 (986)
+++..+.++|+||.|+.
T Consensus 171 ~~~~~~~~~DivInatp 187 (270)
T TIGR00507 171 MDELPLHRVDLIINATS 187 (270)
T ss_pred hhhhcccCccEEEECCC
Confidence 12222346788887764
No 257
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=90.02 E-value=0.86 Score=51.29 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=49.1
Q ss_pred EEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCC---ceEEE
Q psy7300 465 YFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPN---VNITY 541 (986)
Q Consensus 465 VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~---~~i~~ 541 (986)
|.|||+|++|+.++-.|+..|+. .+|+++|.+ +.|++..+.-+....+. .++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~----~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~ 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA----SELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE
Confidence 57999999999999999999985 689999853 24455555555555433 22211
Q ss_pred EEcccCCccccccccccccCCCEEEEcCC
Q psy7300 542 HENRVGPETEKVYDDLFFESLDGIANALD 570 (986)
Q Consensus 542 ~~~~v~~~~~~~~~~~f~~~~DvVi~a~D 570 (986)
..+ .+-+.++|+||.+..
T Consensus 58 -----~~~------~~~l~~aDiVIitag 75 (300)
T cd00300 58 -----GGD------YADAADADIVVITAG 75 (300)
T ss_pred -----CCC------HHHhCCCCEEEEcCC
Confidence 110 234689999999864
No 258
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=90.02 E-value=0.95 Score=53.32 Aligned_cols=111 Identities=20% Similarity=0.230 Sum_probs=74.2
Q ss_pred CcEEEEecChhhH-HHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEE
Q psy7300 463 LKYFVVGAGAIGC-ELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITY 541 (986)
Q Consensus 463 ~~VlvvGaGgiG~-e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~ 541 (986)
.||.|||+|+.-+ ++++.|+...-.. ..++|+++|-|. ...|+.- ...+++.+++.++.++|++
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l-~~~ei~L~Did~--~~rl~~v------------~~~~~~~~~~~~~~~~v~~ 65 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEEL-PVTELVLVDIDE--EEKLEIV------------GALAKRMVKKAGLPIKVHL 65 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccC-CCCEEEEecCCh--HHHHHHH------------HHHHHHHHHhhCCCeEEEE
Confidence 3799999999765 7777777632111 127999999885 3333321 2346666777888888877
Q ss_pred EEcccCCccccccccccccCCCEEEEcC--CCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 542 HENRVGPETEKVYDDLFFESLDGIANAL--DNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 542 ~~~~v~~~~~~~~~~~f~~~~DvVi~a~--Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
.... .+.+.++|+||++. ...++|..-.+...++|+-- .-|.|..|-
T Consensus 66 t~d~----------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~g--qET~G~GG~ 114 (419)
T cd05296 66 TTDR----------REALEGADFVFTQIRVGGLEARALDERIPLKHGVIG--QETTGAGGF 114 (419)
T ss_pred eCCH----------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCcc--ccCCCcchH
Confidence 6543 35678999999874 34566666677788887653 456676663
No 259
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.00 E-value=1 Score=50.62 Aligned_cols=108 Identities=21% Similarity=0.334 Sum_probs=71.4
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccc--------cccCccccCcCCCCCCCcHHHHHHHHHHhhC
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIE--------KSNLNRQFLFRPHDVQQPKSATAAKAIKVMN 534 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie--------~sNLnRqflf~~~diG~~Ka~~a~~~l~~~n 534 (986)
++|.|||+|-.|+-+|..+|..|+ .+++.|...=. ..+|.|+. .-|+.+.+.+...+.++.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~------~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY------DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARIT 72 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC------ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhcc
Confidence 579999999999999999999778 89999976211 22344443 225555555556666555
Q ss_pred CCceEEEEEcccCCccccccccccccCCCEEEEcC-CCHHHHHHHHHHHHHcCCc--EEEEeecCCc
Q psy7300 535 PNVNITYHENRVGPETEKVYDDLFFESLDGIANAL-DNVEARIYMDRRCVYSRKP--LLESGTLGTK 598 (986)
Q Consensus 535 p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~-Dn~~ar~~l~~~c~~~~~p--li~~g~~G~~ 598 (986)
|...+ .-+.++|+||-|+ -|.+.++.+=+..-..-.| ++.+-|++..
T Consensus 73 ~~~~~-----------------~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~ 122 (307)
T COG1250 73 PTTDL-----------------AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122 (307)
T ss_pred ccCch-----------------hHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCC
Confidence 44221 2468899999774 5677777554444444443 7777777653
No 260
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.99 E-value=1.3 Score=52.82 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=59.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCCC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELS 155 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~~ 155 (986)
++|+|+|+|+.|..+|+.|...|. ++++.|..... +...+...|.+. .+.+..-. ...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g~-~~~ 58 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLGK-PLE 58 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEECC-ccc
Confidence 479999999999999999999997 79998864321 122223345554 34443211 111
Q ss_pred H----hhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEe
Q psy7300 156 E----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIA 192 (986)
Q Consensus 156 ~----~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~ 192 (986)
. ..+.++|+||.+..-. ....+-..+++.++|++.-
T Consensus 59 ~~~~~~~~~~~d~vv~s~gi~-~~~~~~~~a~~~~i~v~~~ 98 (459)
T PRK02705 59 LESFQPWLDQPDLVVVSPGIP-WDHPTLVELRERGIEVIGE 98 (459)
T ss_pred hhhhhHHhhcCCEEEECCCCC-CCCHHHHHHHHcCCcEEEh
Confidence 1 3567899988854321 1223455678889998764
No 261
>PRK07062 short chain dehydrogenase; Provisional
Probab=89.99 E-value=0.83 Score=49.76 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=44.9
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
|.++.++|.|+ ||||.++++.|+..|. ++++++.+. .+.+.+.+.+....|..+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~ 60 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA------SVAICGRDE-------------------ERLASAEARLREKFPGAR 60 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHHHhhCCCce
Confidence 56788999997 7899999999999987 788887542 234444555666666666
Q ss_pred EEEEEcccC
Q psy7300 539 ITYHENRVG 547 (986)
Q Consensus 539 i~~~~~~v~ 547 (986)
+..+..++.
T Consensus 61 ~~~~~~D~~ 69 (265)
T PRK07062 61 LLAARCDVL 69 (265)
T ss_pred EEEEEecCC
Confidence 665555544
No 262
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.97 E-value=1.6 Score=49.13 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=28.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
.+|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 479999999999999999999997 79999854
No 263
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.91 E-value=1.2 Score=53.53 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=31.5
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++|+|+|+|++|.++|..|+..|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~------~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA------RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 457789999999999999999999998 89999854
No 264
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.89 E-value=0.45 Score=48.14 Aligned_cols=89 Identities=21% Similarity=0.219 Sum_probs=53.6
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCc--cccCcCCCCCCCcHHHHHHHHHHhhCCCceEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLN--RQFLFRPHDVQQPKSATAAKAIKVMNPNVNITY 541 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLn--Rqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~ 541 (986)
||.|+|+|..|+.++..|+..|. +++++..|.=....++ |+- ....|+..+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~------~V~l~~~~~~~~~~i~~~~~n-------------------~~~~~~~~l~~ 55 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH------EVTLWGRDEEQIEEINETRQN-------------------PKYLPGIKLPE 55 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE------EEEEETSCHHHHHHHHHHTSE-------------------TTTSTTSBEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------EEEEEeccHHHHHHHHHhCCC-------------------CCCCCCcccCc
Confidence 69999999999999999999996 9999987751111111 110 01123322211
Q ss_pred EEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHH
Q psy7300 542 HENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCV 583 (986)
Q Consensus 542 ~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~ 583 (986)
.-.+.. +. .+.+++.|+|+-|+-...-|..+.++..
T Consensus 56 -~i~~t~---dl--~~a~~~ad~IiiavPs~~~~~~~~~l~~ 91 (157)
T PF01210_consen 56 -NIKATT---DL--EEALEDADIIIIAVPSQAHREVLEQLAP 91 (157)
T ss_dssp -TEEEES---SH--HHHHTT-SEEEE-S-GGGHHHHHHHHTT
T ss_pred -cccccc---CH--HHHhCcccEEEecccHHHHHHHHHHHhh
Confidence 001111 11 3567899999999988877777777654
No 265
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=89.84 E-value=1.7 Score=52.27 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=73.8
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCc---HHHHHHHHHHhh-CCCce
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQP---KSATAAKAIKVM-NPNVN 538 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~---Ka~~a~~~l~~~-np~~~ 538 (986)
.+|.+||+|..|+.+++||+..|+ ++++.|.+.=....+... ...-|.. -+..+++.+..+ .|++-
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~------~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF------PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC------eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEE
Confidence 479999999999999999999999 999998653211111110 0000211 122334444432 35544
Q ss_pred EEEEEcccCCccccccc--cccccCCCEEEEcCCC-HHHHHHHHHHHHHcCCcEEEEeecCC
Q psy7300 539 ITYHENRVGPETEKVYD--DLFFESLDGIANALDN-VEARIYMDRRCVYSRKPLLESGTLGT 597 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~--~~f~~~~DvVi~a~Dn-~~ar~~l~~~c~~~~~pli~~g~~G~ 597 (986)
+...... +..+.+++ ...+..-|+||++.-. ++.-..+.+.+...|+.+|++++.|.
T Consensus 77 i~~v~~~--~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 77 IILVKAG--APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred EEECCCc--HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 4443221 11111211 1234566899998654 55555668888999999999999976
No 266
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=89.83 E-value=0.99 Score=51.20 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=29.1
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++|+|.|+ |+||+.+++.|+..|-+ .+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~----~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNP----KKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCC----cEEEEEcCC
Confidence 35678999996 88999999999988621 378888754
No 267
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=89.80 E-value=1.2 Score=52.70 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=75.0
Q ss_pred CcEEEEecChhh-HHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEE
Q psy7300 463 LKYFVVGAGAIG-CELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITY 541 (986)
Q Consensus 463 ~~VlvvGaGgiG-~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~ 541 (986)
.||.|||+|+.= .++++.|+..--.. +.+.|+++|-|. ..|.+ =...+++.+++.++.++|++
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l-~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~ 64 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDF-PLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVY 64 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccC-CCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEE
Confidence 379999999863 36777776552100 227999999665 22221 12345566677777888887
Q ss_pred EEcccCCccccccccccccCCCEEEEc--CCCHHHHHHHHHHHHHcCCcEEEEeecCCcce
Q psy7300 542 HENRVGPETEKVYDDLFFESLDGIANA--LDNVEARIYMDRRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 542 ~~~~v~~~~~~~~~~~f~~~~DvVi~a--~Dn~~ar~~l~~~c~~~~~pli~~g~~G~~G~ 600 (986)
...+ .+.++++|.|+++ .+..++|..--+.+.++|+ +-.-|.|..|-
T Consensus 65 Ttdr----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~ 113 (437)
T cd05298 65 TTDP----------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGF 113 (437)
T ss_pred ECCH----------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHH
Confidence 7544 4668999999987 4567888877899999996 44466677773
No 268
>PLN02602 lactate dehydrogenase
Probab=89.76 E-value=1.1 Score=51.65 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=30.4
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.||.|||+|.+|+.++-.|+..|+. ++|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~----~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA----DELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeC
Confidence 6999999999999999999999985 68999984
No 269
>PLN02780 ketoreductase/ oxidoreductase
Probab=89.73 E-value=1.2 Score=50.56 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=43.8
Q ss_pred cCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 462 KLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 462 ~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
++.++|.|+ ||||.++++.|+..|. ++.+++.+. .|.+.+++.++..+|..++.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~------~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL------NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC------CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEE
Confidence 567999997 8899999999999998 888887432 24455556666666666665
Q ss_pred EEEcccC
Q psy7300 541 YHENRVG 547 (986)
Q Consensus 541 ~~~~~v~ 547 (986)
.+..++.
T Consensus 108 ~~~~Dl~ 114 (320)
T PLN02780 108 TVVVDFS 114 (320)
T ss_pred EEEEECC
Confidence 5554443
No 270
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=89.68 E-value=3.6 Score=46.66 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=28.6
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
|++++|.|||+|.+|..++++|...|+ ++++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~------~Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL------NVIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC------eEEEEE
Confidence 568899999999999999999999987 565544
No 271
>PTZ00325 malate dehydrogenase; Provisional
Probab=89.63 E-value=0.72 Score=52.32 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=50.6
Q ss_pred hhcCcEEEEcC-ChhHHHHHHHHHHhCCC-eEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 73 MASSDVLISGL-GGLGVEIAKNVILSGVK-SVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 73 L~~s~VlIiG~-gglGseiaknLvl~GVg-~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
++-.||+|+|+ |.+|+.+|-.|+..|.. ++.|+|-+.. ++++ .-|+..++.+.+...
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~-------------------~g~a--~Dl~~~~~~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA-------------------PGVA--ADLSHIDTPAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC-------------------cccc--cchhhcCcCceEEEe
Confidence 34459999998 99999999999877774 7999996221 1111 123333444555544
Q ss_pred cCCCC-HhhhccccEEEEecC
Q psy7300 151 TGELS-EAFIKKFRVVVLTNS 170 (986)
Q Consensus 151 ~~~~~-~~~l~~~dvVI~~~~ 170 (986)
.+.-+ .+-+++.|+||.+..
T Consensus 65 td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 65 ADGELWEKALRGADLVLICAG 85 (321)
T ss_pred cCCCchHHHhCCCCEEEECCC
Confidence 33223 467889999998753
No 272
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.62 E-value=1.5 Score=49.43 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=29.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGV-KSVTLHDTT 108 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GV-g~itlvD~d 108 (986)
..+|+|||+|.+|..+++.|...|. ..++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4689999999999999999999997 478888853
No 273
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.60 E-value=2.8 Score=44.82 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=55.8
Q ss_pred cEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhh-cC--C-CCEEEeec
Q psy7300 77 DVLISG-LGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQ-LN--P-YVSTKAYT 151 (986)
Q Consensus 77 ~VlIiG-~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~-lN--p-~V~v~~~~ 151 (986)
+|.||| +|.+|+.+++.|+..| .++++++.+. .+++...+.... +- . .+.+...
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~~~- 60 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVTGA- 60 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEEEe-
Confidence 699997 8999999999999999 5778876422 233333322211 10 0 1112211
Q ss_pred CCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
-..+.+..+|+||+|.-.......+.++.....-.+|...+.|
T Consensus 61 --~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ng 103 (219)
T TIGR01915 61 --DNAEAAKRADVVILAVPWDHVLKTLESLRDELSGKLVISPVVP 103 (219)
T ss_pred --ChHHHHhcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccC
Confidence 1245678899999998765554444444322111444444455
No 274
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.50 E-value=1.6 Score=49.20 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
..+|.|+|+|.+|+.+|++|...|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3579999999999999999999996 78999875
No 275
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=89.43 E-value=1.9 Score=49.25 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=30.5
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
+++++|+|.|+ |.||+++++.|+..|. +++++|.+.
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~------~V~~~~r~~ 38 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA------EVYGYSLDP 38 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC------EEEEEeCCC
Confidence 45789999996 8899999999999987 788887653
No 276
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=89.42 E-value=0.73 Score=52.39 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=49.9
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCC-C-----eEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC-CCCE-
Q psy7300 76 SDVLISGL-GGLGVEIAKNVILSGV-K-----SVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN-PYVS- 146 (986)
Q Consensus 76 s~VlIiG~-gglGseiaknLvl~GV-g-----~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN-p~V~- 146 (986)
.||.|||+ |.+|+.+|-.|+..|+ + ++.|+|-.. .+.|++..+.-|.... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~~ 66 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLAG 66 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccCC
Confidence 58999998 9999999999999998 4 699988421 1123333344455444 3322
Q ss_pred EEeecCCCCHhhhccccEEEEecC
Q psy7300 147 TKAYTGELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 147 v~~~~~~~~~~~l~~~dvVI~~~~ 170 (986)
++... =+.+-++++|+||.+..
T Consensus 67 ~~i~~--~~~~~~~daDvVVitAG 88 (323)
T TIGR01759 67 VVATT--DPEEAFKDVDAALLVGA 88 (323)
T ss_pred cEEec--ChHHHhCCCCEEEEeCC
Confidence 12211 13466889999998864
No 277
>PLN02240 UDP-glucose 4-epimerase
Probab=89.36 E-value=2 Score=48.91 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=29.0
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
|.+++|+|.|+ |.+|+.+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~------~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY------KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEe
Confidence 46789999986 8999999999999887 888887
No 278
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.35 E-value=1.5 Score=49.01 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=30.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTA 109 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~ 109 (986)
++|.|||+|..|+.+|.+++++|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999997 799999654
No 279
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.33 E-value=0.53 Score=42.49 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=32.8
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.+..++++|+|+|++|..++..|...|. ..++++|.|
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~-----~~v~v~~rd 56 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGG-----KKVVLCDRD 56 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCC
Confidence 3778999999999999999999999875 589999883
No 280
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.33 E-value=0.75 Score=51.67 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=61.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhc-CCCCEEEeecCCCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQL-NPYVSTKAYTGELS 155 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~l-Np~V~v~~~~~~~~ 155 (986)
+|.|||+|..|+.++.+|+..|. .++++|.+.-....+... |...+....+....+ .+++-+-.......
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999995 688888754322222111 100000011111111 24444444333221
Q ss_pred Hh-------hhccccEEEEecCC-HHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 156 EA-------FIKKFRVVVLTNST-YDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 156 ~~-------~l~~~dvVI~~~~~-~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
.+ .+..=++||++... +....++.+.+.+.++.|+.+.+.|
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence 11 12334677776543 3444555666777788888877766
No 281
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=89.32 E-value=0.71 Score=51.17 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=32.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTA 109 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~ 109 (986)
+.+|+|+|+||.+..++..|...|+++|+|++.+.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 35899999999999999999999999999999754
No 282
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.22 E-value=1.4 Score=57.31 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=60.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhC-CC------------eEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhh
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVILSG-VK------------SVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQ 140 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLvl~G-Vg------------~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~ 140 (986)
+.++|+|+|+|.+|..++..|+..+ +. .+++.| .-..+|+.+++.+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD-------------------~~~~~a~~la~~~-- 626 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVAS-------------------LYLKDAKETVEGI-- 626 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEEC-------------------CCHHHHHHHHHhc--
Confidence 4679999999999999999998753 22 133333 2334554444432
Q ss_pred cCCCCEEEee-cCCCC--HhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEee
Q psy7300 141 LNPYVSTKAY-TGELS--EAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIAD 193 (986)
Q Consensus 141 lNp~V~v~~~-~~~~~--~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~ 193 (986)
|.++.... ..+.. .+++++.|+||.|... ..-..+...|-++|+.++...
T Consensus 627 --~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 627 --ENAEAVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred --CCCceEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 33322111 11111 1234689999999865 344678889999999888664
No 283
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=89.21 E-value=1.6 Score=51.70 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=63.2
Q ss_pred cCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 75 SSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 75 ~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
..+|+|.| .|-+|+++++.|...|. +++.+|....... .+. ..+.. ++ .++....+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~~~---------------~~~----~~~~~-~~--~~~~~~~D 176 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTGRK---------------ENL----VHLFG-NP--RFELIRHD 176 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCccH---------------hHh----hhhcc-CC--ceEEEECc
Confidence 45899999 57899999999999986 6888885321100 000 01111 12 23333344
Q ss_pred CCHhhhccccEEEEecC---------CH--------HHHHHHHHHHHHcCCcEEEeecccceE
Q psy7300 154 LSEAFIKKFRVVVLTNS---------TY--------DEQLAISQITHANDIALIIADTRGLFA 199 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~---------~~--------~~~~~i~~~c~~~~ip~I~~~~~G~~G 199 (986)
+.+..+.++|+||-+.. +. ..-..+-+.|+++++.||.+++.+.||
T Consensus 177 i~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg 239 (436)
T PLN02166 177 VVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYG 239 (436)
T ss_pred cccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhC
Confidence 43344567898886542 11 112456678988899999998888776
No 284
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.19 E-value=0.59 Score=42.19 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=34.1
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
.+..++|+|+|+|++|..++..|...|...++++|.|
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rd 56 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRD 56 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3778999999999999999999999998999999983
No 285
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.11 E-value=1.3 Score=44.86 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=56.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHh--hcCCCCEEEe---ec
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLS--QLNPYVSTKA---YT 151 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~--~lNp~V~v~~---~~ 151 (986)
+|.|+|+|..|+.+|..|+..| .+++|+..+.- .++.+.+.=. ..-|.+++.. .+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-------------------~~~~i~~~~~n~~~~~~~~l~~~i~~t 60 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-------------------QIEEINETRQNPKYLPGIKLPENIKAT 60 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-------------------HHHHHHHHTSETTTSTTSBEETTEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-------------------HHHHHHHhCCCCCCCCCcccCcccccc
Confidence 6999999999999999999999 78999887541 1111111100 0112222211 01
Q ss_pred CCCCHhhhccccEEEEecCCHHHHHHHHHHHH--HcCCcEEEeecccc
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYDEQLAISQITH--ANDIALIIADTRGL 197 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~--~~~ip~I~~~~~G~ 197 (986)
.++ ++.+++.|+||.+..+...+..+.++.. +.+.++|. .+.|+
T Consensus 61 ~dl-~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~-~~KG~ 106 (157)
T PF01210_consen 61 TDL-EEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS-ATKGF 106 (157)
T ss_dssp SSH-HHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE-TS-SE
T ss_pred cCH-HHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE-ecCCc
Confidence 111 3578899999999988776655555543 33444443 44554
No 286
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.09 E-value=2.1 Score=48.58 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=61.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCC-----EEEee
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYV-----STKAY 150 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V-----~v~~~ 150 (986)
++|.|||+|.+|+.+|.+++.+|. .++++|.+.-..+ -++.+.....+.+.+..+.. .++..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 74 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEA------------ALRANVANAWPALERQGLAPGASPARLRFV 74 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHH------------HHHHHHHHHHHHHHHcCCChhhHHhhceec
Confidence 579999999999999999999997 7999996542111 01222223333333322110 11111
Q ss_pred cCCCCHhhhccccEEEEecC-CHHHHHHHH----HHHHHcCCcEEEeecccc
Q psy7300 151 TGELSEAFIKKFRVVVLTNS-TYDEQLAIS----QITHANDIALIIADTRGL 197 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~-~~~~~~~i~----~~c~~~~ip~I~~~~~G~ 197 (986)
. + -++.++++|+|+-+.. +.+.+..+- +.|.. +. +|.+.+.|+
T Consensus 75 ~-~-l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~-~a-IlaSnTS~l 122 (321)
T PRK07066 75 A-T-IEACVADADFIQESAPEREALKLELHERISRAAKP-DA-IIASSTSGL 122 (321)
T ss_pred C-C-HHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC-Ce-EEEECCCcc
Confidence 1 1 1356789999999874 455444333 33322 22 677777764
No 287
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=89.07 E-value=0.97 Score=54.03 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=69.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCch--HHHHHHHHHhhc-CCCCEEEeecC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRN--RAEVSHTNLSQL-NPYVSTKAYTG 152 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~--Ka~a~~~~L~~l-Np~V~v~~~~~ 152 (986)
++|.|||+|..|+.+|.||...|. +++++|.+.-....+... ...-|.+ .+....+.++.+ .|.+-+-....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 799999754322222110 0000100 111222333333 35544443221
Q ss_pred C-CCH-------hhhccccEEEEecCC-HHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 153 E-LSE-------AFIKKFRVVVLTNST-YDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 153 ~-~~~-------~~l~~~dvVI~~~~~-~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
. ..+ ..+..-|+||++.-. ...-.+..+.+.++|+.|+.+.+.|
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSG 129 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSG 129 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCC
Confidence 1 111 124556889987753 4555566688888899999999888
No 288
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=89.05 E-value=1.7 Score=48.72 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=27.4
Q ss_pred cEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 464 KYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 464 ~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+|+|.|+ |.+|..+++.|+..|. +++++|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~------~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE------EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC------EEEEEEec
Confidence 6899985 9999999999999987 88888864
No 289
>PRK07831 short chain dehydrogenase; Provisional
Probab=89.05 E-value=1.4 Score=47.95 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=29.2
Q ss_pred HHhcCcEEEEec-C-hhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGA-G-AIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGa-G-giG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.+.+++++|.|+ | |||..+++.|+..|. +++++|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~------~V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA------RVVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC------EEEEEeC
Confidence 345688999997 6 799999999999998 7888763
No 290
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=89.02 E-value=2.4 Score=46.61 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=26.7
Q ss_pred CcEEEEcC-ChhHHHHHHHHHH-hCCCeEEEEeCCC
Q psy7300 76 SDVLISGL-GGLGVEIAKNVIL-SGVKSVTLHDTTA 109 (986)
Q Consensus 76 s~VlIiG~-gglGseiaknLvl-~GVg~itlvD~d~ 109 (986)
.+|+|+|+ |.+|..+++.+.. .++.=+.++|.+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 47999999 9999999998875 4666666677653
No 291
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=89.01 E-value=2.2 Score=46.98 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=54.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC---CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVILSGV---KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLvl~GV---g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
.+.+|.|||+|-+|+.+++.|..+|+ .++.++|.+.-. .+ +...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~~ 48 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVYL 48 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEEe
Confidence 45689999999999999999999884 236666543210 00 0111
Q ss_pred cCCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 151 TGELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
. -+.+.++++|+||+|..+......+.++....+-..|.+.+.|
T Consensus 49 ~--~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aG 92 (260)
T PTZ00431 49 Q--SNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISICGG 92 (260)
T ss_pred C--ChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCC
Confidence 1 1234567899999998776666556555432222344555455
No 292
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=88.95 E-value=3.1 Score=40.07 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=54.5
Q ss_pred cEEEEc-CChhHHHHHHHHHHhC-CCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC
Q psy7300 77 DVLISG-LGGLGVEIAKNVILSG-VKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL 154 (986)
Q Consensus 77 ~VlIiG-~gglGseiaknLvl~G-Vg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~ 154 (986)
||.|+| .|-+|.++++.|...- +.-+.++.... +.|+.-..... .....-.+.... .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~~~~~~~----~~~~~~~~~~~~--~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKPLSEVFP----HPKGFEDLSVED--A 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSBHHHTTG----GGTTTEEEBEEE--T
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCeeehhcc----ccccccceeEee--c
Confidence 699999 8889999999988732 23333333322 24443222111 111122333332 4
Q ss_pred CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEee
Q psy7300 155 SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIAD 193 (986)
Q Consensus 155 ~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~ 193 (986)
+.+.+.+.|+|+.|..+.... .+...+.+.|+++|...
T Consensus 60 ~~~~~~~~Dvvf~a~~~~~~~-~~~~~~~~~g~~ViD~s 97 (121)
T PF01118_consen 60 DPEELSDVDVVFLALPHGASK-ELAPKLLKAGIKVIDLS 97 (121)
T ss_dssp SGHHHTTESEEEE-SCHHHHH-HHHHHHHHTTSEEEESS
T ss_pred chhHhhcCCEEEecCchhHHH-HHHHHHhhCCcEEEeCC
Confidence 556669999999998764444 44445577788776543
No 293
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=88.92 E-value=1.2 Score=50.85 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=52.5
Q ss_pred hcCcEEEEecChhhHHHHHHHH-HcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFA-MMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa-~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
..++++|+|+|+.|...++.|+ ..|+ .+++|++.+. .|++..++.+.+..+ +++
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i-----~~v~V~~R~~-------------------~~a~~~a~~~~~~~g-~~v 182 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDI-----RSARIWARDS-------------------AKAEALALQLSSLLG-IDV 182 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCc-----cEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceE
Confidence 3468999999999999999997 4677 5888875322 567777777654332 343
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCCC
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALDN 571 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn 571 (986)
.+.. .+ .+.+.++|+|++|+-.
T Consensus 183 ~~~~-~~---------~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 183 TAAT-DP---------RAAMSGADIIVTTTPS 204 (326)
T ss_pred EEeC-CH---------HHHhccCCEEEEecCC
Confidence 3321 11 3456889999999865
No 294
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.92 E-value=1.6 Score=51.80 Aligned_cols=94 Identities=18% Similarity=0.317 Sum_probs=61.2
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+.+++|+|+|.|+.|..+|+.|...|. .+++.|..... . ....|++....+.+ +..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~-----------------~----~~~~l~~~~~gi~~--~~g 58 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKP-----------------E----RVAQIGKMFDGLVF--YTG 58 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCc-----------------h----hHHHHhhccCCcEE--EeC
Confidence 457899999999999999999999997 68888854321 0 01234443233443 333
Q ss_pred CCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEE
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALII 191 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~ 191 (986)
...+..+.++|+||.+..=.+ ...+-..++++++|++.
T Consensus 59 ~~~~~~~~~~d~vv~spgi~~-~~p~~~~a~~~~i~v~~ 96 (445)
T PRK04308 59 RLKDALDNGFDILALSPGISE-RQPDIEAFKQNGGRVLG 96 (445)
T ss_pred CCCHHHHhCCCEEEECCCCCC-CCHHHHHHHHcCCcEEE
Confidence 334456678999998763211 12245566788999885
No 295
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.89 E-value=1.5 Score=48.44 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=29.2
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.+++++|+|+||+|..++..|+..|. +++++|.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~------~v~v~~R 148 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC------NVIIANR 148 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 56789999999999999999999886 8888864
No 296
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.89 E-value=0.79 Score=56.86 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=62.8
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEE
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITY 541 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~ 541 (986)
..+|+|+|+|-+|..+++.|...|+ .++++|.|.-. ++. +++. + ...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~~-------------------v~~----~~~~--g--~~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV------KMTVLDHDPDH-------------------IET----LRKF--G--MKV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC------CEEEEECCHHH-------------------HHH----HHhc--C--CeE
Confidence 5789999999999999999999998 89999988622 121 2221 2 223
Q ss_pred EEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHc
Q psy7300 542 HENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYS 585 (986)
Q Consensus 542 ~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~ 585 (986)
+..+... .+.+...=.+++|.|+.++|+.+....+-..++++
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 447 FYGDATR--MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred EEEeCCC--HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4443332 12222334578999999999999888887777765
No 297
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.88 E-value=2.5 Score=46.39 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=53.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC--CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGV--KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GV--g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
.+|.|||+|.+|+.++..|...|. ..+.++|.+. .+++.+.+.+ .+.+ . .
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~~~~~~-----g~~~--~-~- 54 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAALAEEY-----GVRA--A-T- 54 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHHHHHhc-----CCee--c-C-
Confidence 479999999999999999999984 3566666421 1222222221 1222 1 1
Q ss_pred CCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 154 LSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
-..+.+.++|+||.|..+......+..+....+ ..|.+.+.|
T Consensus 55 ~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~-~~vvs~~~g 96 (267)
T PRK11880 55 DNQEAAQEADVVVLAVKPQVMEEVLSELKGQLD-KLVVSIAAG 96 (267)
T ss_pred ChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcC-CEEEEecCC
Confidence 123456789999999966554444444432222 234444444
No 298
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=88.87 E-value=2.2 Score=48.19 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=53.6
Q ss_pred HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEe
Q psy7300 70 MRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKA 149 (986)
Q Consensus 70 q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~ 149 (986)
...|++++|.|||+|.+|..+|+||..+|+ ++++.|... ++.. ...+. .+++.
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~------------------~s~~-----~A~~~--G~~v~- 63 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPG------------------KSFE-----VAKAD--GFEVM- 63 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcc------------------hhhH-----HHHHc--CCEEC-
Confidence 568999999999999999999999999999 677776321 0000 11111 22221
Q ss_pred ecCCCCHhhhccccEEEEecCCHHHHHHHH
Q psy7300 150 YTGELSEAFIKKFRVVVLTNSTYDEQLAIS 179 (986)
Q Consensus 150 ~~~~~~~~~l~~~dvVI~~~~~~~~~~~i~ 179 (986)
+ -++.++..|+|+.+..+...+..++
T Consensus 64 ---s-l~Eaak~ADVV~llLPd~~t~~V~~ 89 (335)
T PRK13403 64 ---S-VSEAVRTAQVVQMLLPDEQQAHVYK 89 (335)
T ss_pred ---C-HHHHHhcCCEEEEeCCChHHHHHHH
Confidence 1 3578889999999886655554444
No 299
>PRK06487 glycerate dehydrogenase; Provisional
Probab=88.86 E-value=0.78 Score=52.03 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=30.9
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.|.+++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm------~V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM------RVLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5889999999999999999999987776 7877764
No 300
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.85 E-value=1.9 Score=51.97 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=61.3
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+.+++|+|+|+|+.|..+|+.|...|. +++..|..... + ..+.|.+.-+.+.+. ..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~-----------------~----~~~~L~~~~~~~~~~--~g 60 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTREAP-----------------P----NLAALRAELPDAEFV--GG 60 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCCc-----------------h----hHHHHHhhcCCcEEE--eC
Confidence 457789999999999999999999997 68888854310 0 012244443344433 23
Q ss_pred CCCHhhhccccEEEEecC-CHH--HHHHHHHHHHHcCCcEEE
Q psy7300 153 ELSEAFIKKFRVVVLTNS-TYD--EQLAISQITHANDIALII 191 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~-~~~--~~~~i~~~c~~~~ip~I~ 191 (986)
...++.+.++|+||.... +.. ....+-..+++.++|++.
T Consensus 61 ~~~~~~~~~~d~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~ 102 (498)
T PRK02006 61 PFDPALLDGVDLVALSPGLSPLEAALAPLVAAARERGIPVWG 102 (498)
T ss_pred CCchhHhcCCCEEEECCCCCCcccccCHHHHHHHHCCCcEEE
Confidence 334566778999998753 211 011344556788999884
No 301
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.85 E-value=1.2 Score=47.72 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=30.8
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
+.+++|+|.|+ |++|..+++.|+..|. ++++++.+.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~------~V~~~~r~~ 40 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA------EVIVVDICG 40 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCCH
Confidence 56788999995 8999999999999987 788887653
No 302
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=88.84 E-value=0.68 Score=52.04 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=30.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCC-eEEEEeCC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVK-SVTLHDTT 108 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg-~itlvD~d 108 (986)
.||.|+|+|.+|+.+|-.|+.-+++ .+.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 3799999999999999999999999 99999953
No 303
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=88.77 E-value=0.73 Score=57.91 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=89.4
Q ss_pred CcEEEEecChhhHHHHHHHH-HcCCCcCCCCeEEEEeCCccccccCcccc--C---c-CCCCCCCcHHHHHHHHHHhhCC
Q psy7300 463 LKYFVVGAGAIGCELLKNFA-MMGVGAGPGGQIFVTDMDLIEKSNLNRQF--L---F-RPHDVQQPKSATAAKAIKVMNP 535 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa-~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqf--l---f-~~~diG~~Ka~~a~~~l~~~np 535 (986)
++|.|||+|.+|+.++-.++ ..|+ .++++|.+.= -|.|-. + + +...-|+.....+.+.+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~------~V~l~d~~~~---~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---- 371 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI------PVRIKDINPQ---GINNALKYAWKLLDKGVKRRHMTPAERDNQMA---- 371 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC------eEEEEeCCHH---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHc----
Confidence 57999999999999999998 4899 9999997632 121100 0 0 000001111111111111
Q ss_pred CceEEEEEcccCCccccccccccccCCCEEEEcC-CCHHHHHHHHHHHHHcCC--cEEEEeecCCcc-eEEEEeCCCCcc
Q psy7300 536 NVNITYHENRVGPETEKVYDDLFFESLDGIANAL-DNVEARIYMDRRCVYSRK--PLLESGTLGTKG-NSQVVVPHLTES 611 (986)
Q Consensus 536 ~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~-Dn~~ar~~l~~~c~~~~~--pli~~g~~G~~G-~v~~~~p~~t~c 611 (986)
+|+... . .+-+.++|+||.|+ .+.+.++.+-......-. .+|-+-|+++.= .+.-...+..-+
T Consensus 372 --~i~~~~---------~--~~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ 438 (699)
T TIGR02440 372 --LITGTT---------D--YRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENV 438 (699)
T ss_pred --CeEEeC---------C--hHHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccE
Confidence 122111 0 12358999999874 567777755555444433 366666665431 000011111223
Q ss_pred ccCCCCCCCCCCCcccccCCCCcchhhHHHHHHHhhhHhhhhH
Q psy7300 612 YSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSA 654 (986)
Q Consensus 612 y~c~~~~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~F~~~~ 654 (986)
...+.-.|....|...+-.-|.+-..+++++.+++.. .+..+
T Consensus 439 ~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~-~gk~p 480 (699)
T TIGR02440 439 IGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKK-QGKTP 480 (699)
T ss_pred EEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCeE
Confidence 3333223344557777777788888899999887666 35444
No 304
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.72 E-value=0.5 Score=49.95 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.5
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.|++++|+|+|.|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~------~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA------KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 4688999999999999999999999997 88898855
No 305
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=88.65 E-value=1.7 Score=47.41 Aligned_cols=106 Identities=17% Similarity=0.269 Sum_probs=66.6
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHh----CC------CeEEEEeCCC-CCccCCCcccccCcCccCchHHHHHHHHHh
Q psy7300 71 RRMASSDVLISGLGGLGVEIAKNVILS----GV------KSVTLHDTTA-TSLSDLSSQFYLSEKDVGRNRAEVSHTNLS 139 (986)
Q Consensus 71 ~kL~~s~VlIiG~gglGseiaknLvl~----GV------g~itlvD~d~-V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~ 139 (986)
++|++.||+++|+|+.|.-|++.|+.+ |+ ++|.++|.+= +..+. .|+- ..-.+..+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r---------~~l~----~~~~~~a~ 87 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR---------EDLN----PHKKPFAR 87 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT---------SSHS----HHHHHHHB
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC---------ccCC----hhhhhhhc
Confidence 469999999999999999999999999 99 8999999753 32211 2221 12234455
Q ss_pred hcCCCCEEEeecCCCCHhhhccc--cEEEEecC--CHHHHHHHHHHHHHcCCcEEEeec
Q psy7300 140 QLNPYVSTKAYTGELSEAFIKKF--RVVVLTNS--TYDEQLAISQITHANDIALIIADT 194 (986)
Q Consensus 140 ~lNp~V~v~~~~~~~~~~~l~~~--dvVI~~~~--~~~~~~~i~~~c~~~~ip~I~~~~ 194 (986)
..++.-.. .++ .+.++.. |++|-+.. ..=+...+-.++..+..|+|.+-+
T Consensus 88 ~~~~~~~~----~~L-~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS 141 (255)
T PF03949_consen 88 KTNPEKDW----GSL-LEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS 141 (255)
T ss_dssp SSSTTT------SSH-HHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred cCcccccc----cCH-HHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC
Confidence 55554322 111 3556666 99998763 222455667777777789887753
No 306
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=88.65 E-value=0.85 Score=54.49 Aligned_cols=122 Identities=13% Similarity=0.106 Sum_probs=71.6
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCC--cHHHHHHHHHHhh-CCCceEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ--PKSATAAKAIKVM-NPNVNIT 540 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~--~Ka~~a~~~l~~~-np~~~i~ 540 (986)
.|.+||+|..|..++.+|+..|. ++++.|.+.=....+..+. ..|+ .-+..+++.+..+ .|++-+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~------~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF------TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC------eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEE
Confidence 47899999999999999999998 8999987653332222210 0010 1111233444433 3554444
Q ss_pred EEEcccCCccccccc--cccccCCCEEEEcCC-CHHHHHHHHHHHHHcCCcEEEEeecCCc
Q psy7300 541 YHENRVGPETEKVYD--DLFFESLDGIANALD-NVEARIYMDRRCVYSRKPLLESGTLGTK 598 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~--~~f~~~~DvVi~a~D-n~~ar~~l~~~c~~~~~pli~~g~~G~~ 598 (986)
..... ...+.+++ ...+..-|+||++.. .+..-....+.+...++.+|++++.|..
T Consensus 70 ~v~~~--~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 70 MVKAG--APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred ECCCc--HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 43321 01111211 133556689999865 3343333456688889999999999753
No 307
>PRK06932 glycerate dehydrogenase; Provisional
Probab=88.63 E-value=0.81 Score=51.82 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
.|.+++|.|||.|.||.++++.|...|+ ++..+|
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~------~V~~~~ 177 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM------KVLYAE 177 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC------EEEEEC
Confidence 5899999999999999999999987777 777765
No 308
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=88.61 E-value=1.9 Score=42.76 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=49.7
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhc-CCCCE--EEeecCCC
Q psy7300 78 VLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQL-NPYVS--TKAYTGEL 154 (986)
Q Consensus 78 VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~l-Np~V~--v~~~~~~~ 154 (986)
|+|+|+|++|+-+|-.|..+|. .+++++... +++...+.=-.+ .+.-+ +.......
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~--------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP--------------------RLEAIKEQGLTITGPDGDETVQPPIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH--------------------HHHHHHHHCEEEEETTEEEEEEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc--------------------cHHhhhheeEEEEecccceecccccccC
Confidence 7999999999999999999887 588877422 233322221111 11100 10000001
Q ss_pred CH-hhhccccEEEEecCCHHHHHHHHHHH
Q psy7300 155 SE-AFIKKFRVVVLTNSTYDEQLAISQIT 182 (986)
Q Consensus 155 ~~-~~l~~~dvVI~~~~~~~~~~~i~~~c 182 (986)
.+ ...+.+|+||+|+-+......+..+.
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~~l~ 88 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQSLK 88 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHHHHC
T ss_pred cchhccCCCcEEEEEecccchHHHHHHHh
Confidence 12 35678999999998877777666644
No 309
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.48 E-value=2.5 Score=49.62 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=32.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTA 109 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~ 109 (986)
+...+|+|+|+|.+|..+++.+...|. +++++|.+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 467899999999999999999999999 688888644
No 310
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.48 E-value=0.79 Score=50.84 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=30.0
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
++|+|+|+||.|..++-.|+..|+ ++|+|++.+
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~ 155 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF-----TDGTIVARN 155 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCC
Confidence 589999999999999999999999 689998744
No 311
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.44 E-value=1.8 Score=50.88 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=32.8
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTA 109 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~ 109 (986)
+...+|+|+|+|.+|..+|+.|...|+ +++++|.+.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 578999999999999999999999999 799998654
No 312
>PRK08251 short chain dehydrogenase; Provisional
Probab=88.44 E-value=1.7 Score=46.64 Aligned_cols=61 Identities=13% Similarity=0.287 Sum_probs=42.9
Q ss_pred cCcEEEEe-cChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 462 KLKYFVVG-AGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 462 ~~~VlvvG-aGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
+++|+|.| .||||.++++.|+..|. ++++++.+. .+...+.+.+...+|..++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~------~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~ 56 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR------DLALCARRT-------------------DRLEELKAELLARYPGIKVA 56 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEE
Confidence 46789998 48999999999999986 888887532 22334445555566666766
Q ss_pred EEEcccC
Q psy7300 541 YHENRVG 547 (986)
Q Consensus 541 ~~~~~v~ 547 (986)
.+..++.
T Consensus 57 ~~~~D~~ 63 (248)
T PRK08251 57 VAALDVN 63 (248)
T ss_pred EEEcCCC
Confidence 6665554
No 313
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=88.41 E-value=1 Score=52.32 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=32.3
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.|.+++|.|||+|.||..+++.|...|+ ++..+|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~------~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW------KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 4788999999999999999999999998 8888886
No 314
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=88.40 E-value=0.81 Score=51.76 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=50.7
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
.|.+++|.|||.|.||.++++.+...|+ ++..+|.-.-. .+.|-.. ..+.++.+...
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm------~V~~~d~~~~~------------~~~~~~~-----~~l~ell~~sD 198 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA------KVVYYSTSGKN------------KNEEYER-----VSLEELLKTSD 198 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC------EEEEECCCccc------------cccCcee-----ecHHHHhhcCC
Confidence 6789999999999999999999987776 88888762110 0111111 12344444555
Q ss_pred EEEEEcccCCccccccccccccC
Q psy7300 539 ITYHENRVGPETEKVYDDLFFES 561 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~ 561 (986)
+.......+++|...++.++|+.
T Consensus 199 vv~lh~Plt~~T~~li~~~~~~~ 221 (311)
T PRK08410 199 IISIHAPLNEKTKNLIAYKELKL 221 (311)
T ss_pred EEEEeCCCCchhhcccCHHHHHh
Confidence 66666666666666666555543
No 315
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.33 E-value=2.3 Score=47.62 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTA 109 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~ 109 (986)
++|.|||+|-+|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999996 799998643
No 316
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=88.29 E-value=1.8 Score=47.53 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=50.3
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
++.+|.+||+|.+|+.+++.|...|.- ...++.++|.+.- + .+ +.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~--~~~~i~~~~~~~~------~--------~~-------------------~~ 46 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNII--GKENIYYHTPSKK------N--------TP-------------------FV 46 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCC--CcceEEEECCChh------c--------CC-------------------eE
Confidence 456899999999999999999988741 1124777664320 0 00 01
Q ss_pred EEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHH
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRC 582 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c 582 (986)
. .. + +.+...++|+||-|+-....+..+.+..
T Consensus 47 ~----~~-~-----~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 47 Y----LQ-S-----NEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred E----eC-C-----hHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1 11 0 1234568899999988877777777654
No 317
>PRK08655 prephenate dehydrogenase; Provisional
Probab=88.23 E-value=0.87 Score=54.04 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=55.6
Q ss_pred CcEEEEe-cChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEE
Q psy7300 463 LKYFVVG-AGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITY 541 (986)
Q Consensus 463 ~~VlvvG-aGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~ 541 (986)
.+|+|+| +|++|..+++.|...|. +++++|.+.- ++ .+...++. +. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~------~V~v~~r~~~-------------------~~---~~~a~~~g--v~--~ 48 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF------EVIVTGRDPK-------------------KG---KEVAKELG--VE--Y 48 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC------EEEEEECChH-------------------HH---HHHHHHcC--Ce--e
Confidence 3799998 79999999999999887 7888885421 11 11111111 11 1
Q ss_pred EEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHH--HcCCcEEEEee
Q psy7300 542 HENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCV--YSRKPLLESGT 594 (986)
Q Consensus 542 ~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~--~~~~pli~~g~ 594 (986)
... ..+...++|+||.|+-.......+.+..- ..+..+++.++
T Consensus 49 -----~~~-----~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 49 -----AND-----NIDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred -----ccC-----HHHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 000 02345778999998866555556655543 23456777775
No 318
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=88.16 E-value=2.8 Score=47.56 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=28.2
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHD 106 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD 106 (986)
|++++|.|||+|..|..+|++|..+|+ .+++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEE
Confidence 568899999999999999999999998 354444
No 319
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=88.15 E-value=1.9 Score=49.28 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=31.2
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
++++++|+|.|+ |=||+.+++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~------~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ------TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 456799999996 8899999999999887 88888864
No 320
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.14 E-value=0.74 Score=51.20 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=55.9
Q ss_pred HHhcCcEEEEecCh-hhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCc
Q psy7300 459 KLGKLKYFVVGAGA-IGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNV 537 (986)
Q Consensus 459 ~L~~~~VlvvGaGg-iG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~ 537 (986)
.|.+++|+|||.|. +|..+++.|...|. .+++++..+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga------tVtv~~s~t------------------------------------ 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA------SVTILHSRS------------------------------------ 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC------eEEEEeCCc------------------------------------
Confidence 37889999999999 99999999999887 889887321
Q ss_pred eEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeec
Q psy7300 538 NITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTL 595 (986)
Q Consensus 538 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~ 595 (986)
.++ .+..+++|+||.|+.... ++..--++.+.-+||.|+.
T Consensus 193 ------~~l---------~~~~~~ADIVIsAvg~p~---~i~~~~vk~gavVIDvGi~ 232 (286)
T PRK14175 193 ------KDM---------ASYLKDADVIVSAVGKPG---LVTKDVVKEGAVIIDVGNT 232 (286)
T ss_pred ------hhH---------HHHHhhCCEEEECCCCCc---ccCHHHcCCCcEEEEcCCC
Confidence 001 245688999999987643 2333234556667887764
No 321
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.12 E-value=0.86 Score=49.86 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=32.3
Q ss_pred HHHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 458 EKLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 458 ~~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.++.+++|+|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~------~V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA------NVAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4578899999997 8999999999999987 78888764
No 322
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=88.12 E-value=1.4 Score=52.71 Aligned_cols=114 Identities=16% Similarity=0.207 Sum_probs=68.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCc--hHHHHHHHHHhhc-CCCCEEEeecCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGR--NRAEVSHTNLSQL-NPYVSTKAYTGE 153 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk--~Ka~a~~~~L~~l-Np~V~v~~~~~~ 153 (986)
.|.|||+|..|..+|.||+..|. +++++|.+.-....+..... .|+ .-+....+..+.+ .|++-+-.....
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~-----~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~ 74 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHA-----KGKKIVGAYSIEEFVQSLERPRKIMLMVKAG 74 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhcc-----CCCCceecCCHHHHHhhcCCCCEEEEECCCc
Confidence 48899999999999999999998 79999875533322221100 010 0011122223233 355555444331
Q ss_pred -CCH----h---hhccccEEEEecC-CHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 154 -LSE----A---FIKKFRVVVLTNS-TYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 154 -~~~----~---~l~~~dvVI~~~~-~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
..+ . .+..=++||++.- .+..-.+..+.+.+.++.||.+.+.|
T Consensus 75 ~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsG 126 (467)
T TIGR00873 75 APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSG 126 (467)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 111 1 2345589998874 44554555667888899999999888
No 323
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=88.11 E-value=0.88 Score=40.28 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=40.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN 142 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN 142 (986)
||+|+|.|.+|.|+|..|...|. ++||++...- ++ ...+..-++.+.+.|++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~---~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL---PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS---TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh---hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999995 8999986432 11 2233444566677787774
No 324
>PLN03139 formate dehydrogenase; Provisional
Probab=88.10 E-value=0.67 Score=53.86 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=32.2
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.|.+++|.|||+|.||..+++.|...|+ ++..+|..
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~------~V~~~d~~ 231 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC------NLLYHDRL 231 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC------EEEEECCC
Confidence 5889999999999999999999998888 78888753
No 325
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.04 E-value=2.5 Score=46.99 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=28.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
+|.|||+|.+|..+++.|...|. .++++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999996 68888863
No 326
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=88.02 E-value=1.6 Score=49.73 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=51.3
Q ss_pred HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEe
Q psy7300 70 MRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKA 149 (986)
Q Consensus 70 q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~ 149 (986)
...|++++|.|||+|.+|..+|++|..+|+ ++.+.+... .++. +...+. .+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~-------------------~~s~---~~A~~~--G~~~-- 64 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREG-------------------SKSW---KKAEAD--GFEV-- 64 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCc-------------------hhhH---HHHHHC--CCee--
Confidence 346788999999999999999999999998 566555321 0111 111111 2221
Q ss_pred ecCCCCHhhhccccEEEEecCCHHHHHHH
Q psy7300 150 YTGELSEAFIKKFRVVVLTNSTYDEQLAI 178 (986)
Q Consensus 150 ~~~~~~~~~l~~~dvVI~~~~~~~~~~~i 178 (986)
. + ..+.++..|+|+++..+......+
T Consensus 65 ~--s-~~eaa~~ADVVvLaVPd~~~~~V~ 90 (330)
T PRK05479 65 L--T-VAEAAKWADVIMILLPDEVQAEVY 90 (330)
T ss_pred C--C-HHHHHhcCCEEEEcCCHHHHHHHH
Confidence 1 1 246788999999998765544444
No 327
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.01 E-value=1.4 Score=49.33 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=33.9
Q ss_pred ccHHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q psy7300 65 LGHDAMRRMASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDT 107 (986)
Q Consensus 65 ~G~~~q~kL~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~ 107 (986)
|+...+..+.+++|+|.| .||+|.++|+.|+..|. ++++++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 444445567888999999 58999999999999997 6777764
No 328
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=87.92 E-value=2.7 Score=46.57 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=67.0
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHh----CC------CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhh
Q psy7300 71 RRMASSDVLISGLGGLGVEIAKNVILS----GV------KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQ 140 (986)
Q Consensus 71 ~kL~~s~VlIiG~gglGseiaknLvl~----GV------g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~ 140 (986)
++|.+.||+++|+|+.|.-||+.|+.+ |+ ++|.++|.+=+=..+ | .|+-..|.. ..+.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~----~a~~ 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKP----FARK 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHH----HHhh
Confidence 578899999999999999999999998 99 799999975431111 0 122222222 2222
Q ss_pred cCCCCEEEeecCCCCHhhhc--cccEEEEecC--CHHHHHHHHHHHHHcCCcEEEeec
Q psy7300 141 LNPYVSTKAYTGELSEAFIK--KFRVVVLTNS--TYDEQLAISQITHANDIALIIADT 194 (986)
Q Consensus 141 lNp~V~v~~~~~~~~~~~l~--~~dvVI~~~~--~~~~~~~i~~~c~~~~ip~I~~~~ 194 (986)
.++ ..... -.+.++ +.|++|-+.. ..=+...+..++....-|+|.+-+
T Consensus 89 ~~~-----~~~~~-L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 89 DEE-----KEGKS-LLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred cCc-----ccCCC-HHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 332 00112 245666 7799997763 222345566666666678887753
No 329
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.86 E-value=2 Score=48.48 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=52.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC---
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG--- 152 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~--- 152 (986)
.||+|+|+|++|+-.+-.|.++| ..++++-.+. +++++.+. ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~~~~l~~~------GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------RLEALKKK------GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------HHHHHHhC------CeEEecCCCccc
Confidence 37999999999999999999999 6666654321 12222222 112221111
Q ss_pred -----CCCHhhhccccEEEEecCCHHHHHHHHHHHHHc
Q psy7300 153 -----ELSEAFIKKFRVVVLTNSTYDEQLAISQITHAN 185 (986)
Q Consensus 153 -----~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~ 185 (986)
..+.+.+..+|+||++.-+......+..+....
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~ 91 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLL 91 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcC
Confidence 113455668999999987766666666555443
No 330
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.77 E-value=1.1 Score=56.49 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=63.3
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCcccccc----CccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSN----LNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sN----LnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
++|.|||+|.+|+.++-.++..|+ .++++|.+.=.... +.+.+ =..-.-|+...+.+.+.+.++.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~i~~--- 383 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT------PIVMKDINQHSLDLGLTEAAKLL-NKQVERGRITPAKMAGVLNGITP--- 383 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHHH-HHHHHcCCCChhhHHHHHhCeEE---
Confidence 579999999999999999999999 99999976422111 11110 00011222222222222322221
Q ss_pred EEEEEcccCCccccccccccccCCCEEEEcC-CCHHHHHHHHHHHHHcCC--cEEEEeecCC
Q psy7300 539 ITYHENRVGPETEKVYDDLFFESLDGIANAL-DNVEARIYMDRRCVYSRK--PLLESGTLGT 597 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~-Dn~~ar~~l~~~c~~~~~--pli~~g~~G~ 597 (986)
. + . .+-+.++|+||.|+ .+.+.++.+-...-..-. .++-+-|++.
T Consensus 384 ---~-------~--~--~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l 431 (714)
T TIGR02437 384 ---T-------L--S--YAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTI 431 (714)
T ss_pred ---e-------C--C--HHHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 1 0 0 12358999999875 467777755544444333 3666666553
No 331
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.77 E-value=1.2 Score=47.65 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=30.4
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
|.+++++|.|+ |+||..+++.|+..|. +++++|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~------~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA------KLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56789999997 9999999999999887 78888743
No 332
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.74 E-value=2.8 Score=46.58 Aligned_cols=82 Identities=13% Similarity=0.244 Sum_probs=50.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC---CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVILSGV---KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLvl~GV---g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
...+|.+||+|.+|..++++|...|+ ..++++|... ..+++.+... . .+++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~~l~~~---~--g~~~~-- 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQELHQK---Y--GVKGT-- 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHHHHHHh---c--CceEe--
Confidence 34589999999999999999999983 3344443210 1122222221 1 23322
Q ss_pred cCCCCHhhhccccEEEEecCCHHHHHHHHHHH
Q psy7300 151 TGELSEAFIKKFRVVVLTNSTYDEQLAISQIT 182 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c 182 (986)
. + ..+..++.|+||+|..+......+..+.
T Consensus 57 ~-~-~~e~~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 57 H-N-KKELLTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred C-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 2355678999999998766665555554
No 333
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.73 E-value=0.56 Score=52.90 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=29.7
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
..||+|+|+||+|+-++-.|++.|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~------~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL------PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC------CeEEEEec
Confidence 4689999999999999999999987 89999864
No 334
>PRK05875 short chain dehydrogenase; Provisional
Probab=87.73 E-value=1.8 Score=47.41 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=30.5
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++|+|.|+ |+||.++++.|+..|. ++.+++.+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~------~V~~~~r~ 40 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA------AVMIVGRN 40 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 67789999997 8999999999999987 78888743
No 335
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=87.68 E-value=1.6 Score=48.44 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=53.4
Q ss_pred hcCcEEEEecChhhHHHHHHHHHc--CCCcCCCCeEE-EEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCc
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMM--GVGAGPGGQIF-VTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNV 537 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~--Gv~~g~~g~i~-ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~ 537 (986)
...||.|||+|.+|..++++|... |+ .+. +.|.+. .|++.+ ..+.+ ..
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~------el~aV~dr~~-------------------~~a~~~---a~~~g-~~ 55 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGL------TLSAVAVRDP-------------------QRHADF---IWGLR-RP 55 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCe------EEEEEECCCH-------------------HHHHHH---HHhcC-CC
Confidence 347899999999999999999863 44 444 444321 222222 22222 00
Q ss_pred eEEEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEE
Q psy7300 538 NITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLE 591 (986)
Q Consensus 538 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~ 591 (986)
.. .. + + ++++...|+|+.|+-+..- ..+...+.+.|++++.
T Consensus 56 ~~------~~-~----~-eell~~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~ 96 (271)
T PRK13302 56 PP------VV-P----L-DQLATHADIVVEAAPASVL-RAIVEPVLAAGKKAIV 96 (271)
T ss_pred cc------cC-C----H-HHHhcCCCEEEECCCcHHH-HHHHHHHHHcCCcEEE
Confidence 00 11 0 1 3445778999999876544 4445666788998874
No 336
>PRK07680 late competence protein ComER; Validated
Probab=87.68 E-value=3.2 Score=45.92 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=49.2
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC---CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGV---KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GV---g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
+|.|||+|.+|+.++..|...|. ..++++|.+. .+++ .+.+..+.+.+. .
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~----~~~~~~~g~~~~--~-- 54 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAY----HIKERYPGIHVA--K-- 54 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHH----HHHHHcCCeEEE--C--
Confidence 59999999999999999999985 4577776432 1222 222222333321 1
Q ss_pred CCHhhhccccEEEEecCCHHHHHHHHHH
Q psy7300 154 LSEAFIKKFRVVVLTNSTYDEQLAISQI 181 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~~~~~~~~i~~~ 181 (986)
-..+.+.+.|+||+|..+......+..+
T Consensus 55 ~~~~~~~~aDiVilav~p~~~~~vl~~l 82 (273)
T PRK07680 55 TIEEVISQSDLIFICVKPLDIYPLLQKL 82 (273)
T ss_pred CHHHHHHhCCEEEEecCHHHHHHHHHHH
Confidence 1235678899999999654444444444
No 337
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.66 E-value=2.8 Score=47.30 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=28.2
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
+|.|+|+|.+|+.++.+|...|. .++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 79999999999999999999997 58898864
No 338
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=87.65 E-value=1.3 Score=43.33 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=45.3
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
-.+.+|.|||+|-+|..+++.|..+|. .+.-+- +|..+..+++.+.-+...+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~----------------------srs~~sa~~a~~~~~~~~~~~--- 61 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH-EVVGVY----------------------SRSPASAERAAAFIGAGAILD--- 61 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS-EEEEES----------------------SCHH-HHHHHHC--TT--------
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC-eEEEEE----------------------eCCcccccccccccccccccc---
Confidence 346789999999999999999999996 333221 122334555666555544332
Q ss_pred CCCHhhhccccEEEEecCCHHHHHHHHHHH
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYDEQLAISQIT 182 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c 182 (986)
..+.+..+|+|++|..+........+++
T Consensus 62 --~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 62 --LEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp --TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred --cccccccCCEEEEEechHHHHHHHHHHH
Confidence 2356789999999985544444444444
No 339
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.65 E-value=1.9 Score=47.21 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=30.2
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
|.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~------~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA------DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999997 7899999999999997 88888743
No 340
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=87.54 E-value=1.4 Score=51.14 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=52.1
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCCe------EEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC-CCC-E
Q psy7300 76 SDVLISGL-GGLGVEIAKNVILSGVKS------VTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN-PYV-S 146 (986)
Q Consensus 76 s~VlIiG~-gglGseiaknLvl~GVg~------itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN-p~V-~ 146 (986)
.||.|+|+ |.+|+.+|-.|+..|+-. ++|+|-|. -+.|++..+.-|+..- |.. .
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~-----------------~~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER-----------------SKEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc-----------------cchhhhHHHHHHHHhhhhhcCc
Confidence 58999999 999999999999999954 67776433 3345555555555543 332 2
Q ss_pred EEeecCCCCHhhhccccEEEEecC
Q psy7300 147 TKAYTGELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 147 v~~~~~~~~~~~l~~~dvVI~~~~ 170 (986)
+.+... +.+-+++.|+||.+..
T Consensus 108 v~i~~~--~y~~~kdaDIVVitAG 129 (387)
T TIGR01757 108 VSIGID--PYEVFEDADWALLIGA 129 (387)
T ss_pred eEEecC--CHHHhCCCCEEEECCC
Confidence 332222 3567889999999764
No 341
>PRK09186 flagellin modification protein A; Provisional
Probab=87.47 E-value=1.5 Score=47.23 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=28.4
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
+.+++|+|.|+ |+||.++++.|+..|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~------~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG------IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 45788999997 8999999999999987 777775
No 342
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=87.34 E-value=0.62 Score=54.66 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=30.8
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
..+|+|||+|-+||++|-.|++.|+ +++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl------~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV------PVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC------cEEEEEccC
Confidence 3579999999999999999999999 899999654
No 343
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.33 E-value=1.3 Score=47.43 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=31.1
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
+.+++|+|.|+ |++|.++++.|+..|. ++++++.+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~------~V~~~~r~~ 39 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGA------RVVVTDRNE 39 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCCH
Confidence 56789999997 8899999999999998 788887543
No 344
>PLN02253 xanthoxin dehydrogenase
Probab=87.29 E-value=1.8 Score=47.51 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=30.6
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+|.+++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~------~v~~~~~~ 51 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA------KVCIVDLQ 51 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 466788999986 8899999999999997 88888743
No 345
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.24 E-value=3.2 Score=46.84 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=50.7
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
.||+|+|+||+||-++-.|++.| . .++++-.+. + .+++++- .+.|...
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~-----~V~~~~R~~--------------------~----~~~l~~~--GL~i~~~ 48 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-H-----DVTLLVRSR--------------------R----LEALKKK--GLRIEDE 48 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-C-----eEEEEecHH--------------------H----HHHHHhC--CeEEecC
Confidence 48999999999999999999998 3 566543221 0 1222222 2333332
Q ss_pred EcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHH
Q psy7300 543 ENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCV 583 (986)
Q Consensus 543 ~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~ 583 (986)
............+.+....+|+||.++-+......+..+..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~ 89 (307)
T COG1893 49 GGNFTTPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAP 89 (307)
T ss_pred CCccccccccccChhhcCCCCEEEEEeccccHHHHHHHhhh
Confidence 22101001111224556689999988877665555555443
No 346
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.20 E-value=1.6 Score=49.08 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=62.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhc-CCCCEEEeecCC-C
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQL-NPYVSTKAYTGE-L 154 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~l-Np~V~v~~~~~~-~ 154 (986)
+|.+||+|.+|..++++|...|. .++++|.+.-....+. +.|-..+....+.+++. ++++-+...... .
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAG--------KLGITARHSLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH--------HCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence 69999999999999999999996 6888886532111110 11211111111222221 134444443332 1
Q ss_pred CH----hh---hccccEEEEec-CCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 155 SE----AF---IKKFRVVVLTN-STYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 155 ~~----~~---l~~~dvVI~~~-~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
.+ ++ ++.=.+||++. .++....++.+.+.++++.|+.+.+.|
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G 122 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSG 122 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCC
Confidence 11 11 22335777764 345566667777777888888777776
No 347
>KOG0069|consensus
Probab=87.17 E-value=3 Score=47.33 Aligned_cols=79 Identities=23% Similarity=0.247 Sum_probs=52.0
Q ss_pred HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEe
Q psy7300 70 MRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKA 149 (986)
Q Consensus 70 q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~ 149 (986)
...++.++|.|+|+|.+|..+|+.|.-.| ..|.-...... +-+...+...+
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~-------------------~~~~~~~~~~~--------- 207 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQL-------------------PPEEAYEYYAE--------- 207 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCC-------------------chhhHHHhccc---------
Confidence 46789999999999999999999999876 33433332111 11111122111
Q ss_pred ecCCC-CHhhhccccEEEEec-CCHHHHHHHHH
Q psy7300 150 YTGEL-SEAFIKKFRVVVLTN-STYDEQLAISQ 180 (986)
Q Consensus 150 ~~~~~-~~~~l~~~dvVI~~~-~~~~~~~~i~~ 180 (986)
.. .++++.++|+||.|. .+..++..+|.
T Consensus 208 ---~~d~~~~~~~sD~ivv~~pLt~~T~~liNk 237 (336)
T KOG0069|consen 208 ---FVDIEELLANSDVIVVNCPLTKETRHLINK 237 (336)
T ss_pred ---ccCHHHHHhhCCEEEEecCCCHHHHHHhhH
Confidence 12 357888999888766 57778878885
No 348
>PRK06141 ornithine cyclodeaminase; Validated
Probab=87.17 E-value=1.5 Score=49.77 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=52.9
Q ss_pred HHHhcCcEEEEecChhhHHHHHHHHH-cCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCC
Q psy7300 458 EKLGKLKYFVVGAGAIGCELLKNFAM-MGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPN 536 (986)
Q Consensus 458 ~~L~~~~VlvvGaGgiG~e~lknLa~-~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~ 536 (986)
.+...++|+|+|+|+.|..+++.+.+ .|+ .+|+|++.+ ..|++..++.+.+...
T Consensus 121 a~~~~~~v~iiG~G~~a~~~~~al~~~~~~-----~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~- 175 (314)
T PRK06141 121 ARKDASRLLVVGTGRLASLLALAHASVRPI-----KQVRVWGRD-------------------PAKAEALAAELRAQGF- 175 (314)
T ss_pred CCCCCceEEEECCcHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhcCC-
Confidence 34457899999999999999997765 566 588887533 3566666776665322
Q ss_pred ceEEEEEcccCCccccccccccccCCCEEEEcCCC
Q psy7300 537 VNITYHENRVGPETEKVYDDLFFESLDGIANALDN 571 (986)
Q Consensus 537 ~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn 571 (986)
.+.+. .+ . .+...++|+|++|+..
T Consensus 176 -~~~~~----~~----~--~~av~~aDIVi~aT~s 199 (314)
T PRK06141 176 -DAEVV----TD----L--EAAVRQADIISCATLS 199 (314)
T ss_pred -ceEEe----CC----H--HHHHhcCCEEEEeeCC
Confidence 23221 10 1 2456899999999874
No 349
>PRK08291 ectoine utilization protein EutC; Validated
Probab=87.03 E-value=2.1 Score=48.91 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=54.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVIL-SGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl-~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
..+|+|+|+|+.|...+..|.. .|+.++++++.+ ..|++..++.+++.. .+++.... +
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-d 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-D 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC-C
Confidence 4689999999999999999985 688999999753 237777777776433 24443332 1
Q ss_pred CCHhhhccccEEEEecCC
Q psy7300 154 LSEAFIKKFRVVVLTNST 171 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~~ 171 (986)
-++.+.++|+||.|+.+
T Consensus 191 -~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 -VHEAVAGADIIVTTTPS 207 (330)
T ss_pred -HHHHHccCCEEEEeeCC
Confidence 24567889999998865
No 350
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.03 E-value=1.9 Score=46.54 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=29.7
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
+.+++++|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~------~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA------QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEcC
Confidence 56788999997 8999999999999997 7888764
No 351
>PRK07478 short chain dehydrogenase; Provisional
Probab=87.01 E-value=1.3 Score=47.94 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=29.7
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++++|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~------~v~~~~r~ 39 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA------KVVVGARR 39 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999996 7899999999999998 78887643
No 352
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.96 E-value=1.8 Score=46.86 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=30.9
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.+.+++|+|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 367889999996 8999999999999887 78887754
No 353
>PRK05866 short chain dehydrogenase; Provisional
Probab=86.91 E-value=2 Score=47.90 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=30.6
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~------~Vi~~~R~ 73 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA------TVVAVARR 73 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 356788999997 9999999999999987 88888743
No 354
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=86.91 E-value=4.6 Score=46.07 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=25.7
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q psy7300 76 SDVLISGL-GGLGVEIAKNVILSGVKSVTLHDT 107 (986)
Q Consensus 76 s~VlIiG~-gglGseiaknLvl~GVg~itlvD~ 107 (986)
.+|||.|+ |-+|+++++.|...|=-+++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 36999996 889999999999864237887774
No 355
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.90 E-value=1.7 Score=48.46 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=30.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTA 109 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~ 109 (986)
.+|.|+|+|.+|+.+|..|+.+|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 799999654
No 356
>PRK06194 hypothetical protein; Provisional
Probab=86.88 E-value=2.1 Score=47.22 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=30.0
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++|+|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~------~V~~~~r~ 39 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM------KLVLADVQ 39 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 45678999986 8999999999999997 88888754
No 357
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.87 E-value=2.3 Score=48.02 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=29.4
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGV-KSVTLHDTT 108 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GV-g~itlvD~d 108 (986)
+|.|||+|.+|+.+|-.|+..|+ .++.++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 69999999999999999999996 789999953
No 358
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.85 E-value=2.4 Score=50.34 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=59.6
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+++++|+|+|.|+.|..+|+.|...|. ++++.|.+.... ....+.|.+. .+.+. ..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~-------------------~~~~~~l~~~--g~~~~--~~ 58 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSE-------------------NPEAQELLEE--GIKVI--CG 58 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccc-------------------hhHHHHHHhc--CCEEE--eC
Confidence 457899999999999999999999997 688888543110 1122345444 23332 22
Q ss_pred CCCHhhhcc-ccEEEEecCCHHHHHHHHHHHHHcCCcEEEe
Q psy7300 153 ELSEAFIKK-FRVVVLTNSTYDEQLAISQITHANDIALIIA 192 (986)
Q Consensus 153 ~~~~~~l~~-~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~ 192 (986)
....+.+.. +|+||.+..= +....+-..+++.++|++.-
T Consensus 59 ~~~~~~~~~~~d~vV~s~gi-~~~~~~~~~a~~~~i~v~~~ 98 (447)
T PRK02472 59 SHPLELLDEDFDLMVKNPGI-PYTNPMVEKALEKGIPIITE 98 (447)
T ss_pred CCCHHHhcCcCCEEEECCCC-CCCCHHHHHHHHCCCcEEeH
Confidence 222334444 8988876521 11223456778889998853
No 359
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=86.85 E-value=2.4 Score=46.77 Aligned_cols=90 Identities=19% Similarity=0.137 Sum_probs=52.2
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
.||.|||+|.+|..+++.|...+.+ . .-+.++|.+. .+++.+++ ... +..+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~--~-elv~v~d~~~-------------------~~a~~~a~---~~~----~~~~ 52 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRIN--A-ELYAFYDRNL-------------------EKAENLAS---KTG----AKAC 52 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCC--e-EEEEEECCCH-------------------HHHHHHHH---hcC----CeeE
Confidence 4799999999999999999876421 0 1234555431 22222222 221 1111
Q ss_pred EcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEE
Q psy7300 543 ENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLES 592 (986)
Q Consensus 543 ~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~ 592 (986)
. + + ++++.+.|+|+.|+.. .+...+-..+.++|+.++..
T Consensus 53 ~-----~----~-~ell~~~DvVvi~a~~-~~~~~~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 53 L-----S----I-DELVEDVDLVVECASV-NAVEEVVPKSLENGKDVIIM 91 (265)
T ss_pred C-----C----H-HHHhcCCCEEEEcCCh-HHHHHHHHHHHHcCCCEEEE
Confidence 1 0 1 2344789999999754 44444445566788887764
No 360
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=86.83 E-value=0.75 Score=54.95 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=71.4
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCc--HHHHHHHHHHhh-CCCceE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQP--KSATAAKAIKVM-NPNVNI 539 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~--Ka~~a~~~l~~~-np~~~i 539 (986)
++|.|||+|..|..++.||+..|. +++++|.+.=...-+...- ..-|.. -+...++.+..+ .|++-+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~------~V~v~dr~~~~~~~l~~~~----~~~g~~i~~~~s~~e~v~~l~~~d~Ii 71 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF------KISVYNRTYEKTEEFVKKA----KEGNTRVKGYHTLEELVNSLKKPRKVI 71 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC------eEEEEeCCHHHHHHHHHhh----hhcCCcceecCCHHHHHhcCCCCCEEE
Confidence 479999999999999999999998 8999987542221121100 000100 112233444433 355333
Q ss_pred EEEEcccCCccccccc--cccccCCCEEEEcCCC-HHHHHHHHHHHHHcCCcEEEEeecCC
Q psy7300 540 TYHENRVGPETEKVYD--DLFFESLDGIANALDN-VEARIYMDRRCVYSRKPLLESGTLGT 597 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~--~~f~~~~DvVi~a~Dn-~~ar~~l~~~c~~~~~pli~~g~~G~ 597 (986)
...... ...+.+++ ...+..-|+||++... ++.-......+...|+-++++|+.|.
T Consensus 72 l~v~~~--~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 72 LLIKAG--EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred EEeCCh--HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 332211 00111111 2345666899998654 34334445788889999999999975
No 361
>PRK08291 ectoine utilization protein EutC; Validated
Probab=86.82 E-value=1.9 Score=49.19 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=50.6
Q ss_pred cCcEEEEecChhhHHHHHHHHH-cCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAM-MGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~-~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
.++++|+|+|+.|...+..|+. .|+ .+++|++.+. .|++..++.+++.. .+.+.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~-----~~V~v~~R~~-------------------~~a~~l~~~~~~~~-g~~v~ 186 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPI-----REVRVWARDA-------------------AKAEAYAADLRAEL-GIPVT 186 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEcCCH-------------------HHHHHHHHHHhhcc-CceEE
Confidence 4689999999999999999985 566 5899885332 46666666665432 23333
Q ss_pred EEEcccCCccccccccccccCCCEEEEcCCC
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANALDN 571 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn 571 (986)
.... + .+.+.++|+|++|+-.
T Consensus 187 ~~~d-~---------~~al~~aDiVi~aT~s 207 (330)
T PRK08291 187 VARD-V---------HEAVAGADIIVTTTPS 207 (330)
T ss_pred EeCC-H---------HHHHccCCEEEEeeCC
Confidence 2211 0 2456789999999854
No 362
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=86.79 E-value=2 Score=49.41 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=58.3
Q ss_pred CcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEE-EEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 463 LKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIF-VTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 463 ~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~-ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
.||+|+|| |.+|.++++.|...-. -++. +++.+. ..|+. +...+|.+...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-----~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~ 52 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-----VEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL 52 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-----ceEEEEeccch---------------hcCCC--------hHHhCcccccc
Confidence 37999999 9999999999985511 2555 445331 12221 11123322110
Q ss_pred EEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeec
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTL 595 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~ 595 (986)
. ...+.+.+ ..++..++|+|+.|+.+..++.++..+ ...|+.+||.+..
T Consensus 53 ~-~~~~~~~~----~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~~ 101 (346)
T TIGR01850 53 V-DLNLEPID----EEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSAD 101 (346)
T ss_pred C-CceeecCC----HHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCChh
Confidence 0 00111100 023446899999999998888777765 4578888887643
No 363
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.75 E-value=3.1 Score=51.49 Aligned_cols=84 Identities=17% Similarity=0.342 Sum_probs=60.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL 154 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~ 154 (986)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++.. ..++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~g----~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKYG----YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhCC----CeEEEeeC
Confidence 5799999999999999999999999 6899997641 333 233322 22333333
Q ss_pred -CHhh-----hccccEEEEecCCHHHHHHHHHHHHHcC
Q psy7300 155 -SEAF-----IKKFRVVVLTNSTYDEQLAISQITHAND 186 (986)
Q Consensus 155 -~~~~-----l~~~dvVI~~~~~~~~~~~i~~~c~~~~ 186 (986)
+++. ++++++||.+.++.+....+-..+|+++
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 3443 4588999999999888878888888764
No 364
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.74 E-value=3 Score=45.08 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=22.9
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCC
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGV 486 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv 486 (986)
...||.|+|+|.+|..+++.|+..|.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence 35789999999999999999998763
No 365
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.73 E-value=1.8 Score=51.39 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHhhc-CcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEE
Q psy7300 71 RRMAS-SDVLISGLGGLGVEIAKNVILSGV-KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTK 148 (986)
Q Consensus 71 ~kL~~-s~VlIiG~gglGseiaknLvl~GV-g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~ 148 (986)
.|+.+ .+|+|+|+|+.|...+..|...|- -.+++.|.... . . ..++|++ .+++.
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~-----------~------~----~~~~l~~---g~~~~ 57 (438)
T PRK04663 2 DRWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET-----------P------P----GQEQLPE---DVELH 57 (438)
T ss_pred CcccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC-----------c------h----hHHHhhc---CCEEE
Confidence 35556 789999999999999999999865 47888885431 0 0 1123432 34433
Q ss_pred eecCCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEe
Q psy7300 149 AYTGELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIA 192 (986)
Q Consensus 149 ~~~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~ 192 (986)
....+++.+.++|+||.+..=.. ....-..+++.+||++.=
T Consensus 58 --~g~~~~~~~~~~d~vV~SpgI~~-~~p~~~~a~~~gi~i~~~ 98 (438)
T PRK04663 58 --SGGWNLEWLLEADLVVTNPGIAL-ATPEIQQVLAAGIPVVGD 98 (438)
T ss_pred --eCCCChHHhccCCEEEECCCCCC-CCHHHHHHHHCCCcEEEH
Confidence 23334556678999887653111 122345667889998753
No 366
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=86.69 E-value=1.4 Score=53.14 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=30.6
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
=++|.|||+|..|+.++.+|+..|. .++++|.+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~------~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH------QVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCH
Confidence 3579999999999999999999998 899998653
No 367
>PLN02427 UDP-apiose/xylose synthase
Probab=86.66 E-value=3.5 Score=47.88 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=29.9
Q ss_pred HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q psy7300 71 RRMASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDT 107 (986)
Q Consensus 71 ~kL~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~ 107 (986)
++++..+|||.| .|-+|+.+++.|+..|--+++.+|.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 356677899999 5889999999999985346887774
No 368
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=86.65 E-value=2.2 Score=41.76 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=45.5
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
-...||.|||+|-+|..+++.|...|. .|.-+ +. ++...++++..+-+...+
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~------~v~~v---------------~s-------rs~~sa~~a~~~~~~~~~ 59 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH------EVVGV---------------YS-------RSPASAERAAAFIGAGAI 59 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS------EEEEE---------------SS-------CHH-HHHHHHC--TT---
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC------eEEEE---------------Ee-------CCcccccccccccccccc
Confidence 356789999999999999999999987 55433 11 122344445555444332
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHH
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCV 583 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~ 583 (986)
.. . .+..+.+|+|+-|+-+-........++.
T Consensus 60 ~~----~---------~~~~~~aDlv~iavpDdaI~~va~~La~ 90 (127)
T PF10727_consen 60 LD----L---------EEILRDADLVFIAVPDDAIAEVAEQLAQ 90 (127)
T ss_dssp ------T---------TGGGCC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred cc----c---------ccccccCCEEEEEechHHHHHHHHHHHH
Confidence 11 0 2456889999988755454445555543
No 369
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.59 E-value=2.1 Score=50.86 Aligned_cols=92 Identities=14% Similarity=0.236 Sum_probs=60.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL 154 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~ 154 (986)
...|+|+|+|+.|..+|+-|...|. .++..|...- .. ..+.|++.++.+.+.. ...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~-----------------~~----~~~~l~~~~~g~~~~~--~~~ 61 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSREQ-----------------PP----GLDTLAREFPDVELRC--GGF 61 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCCC-----------------ch----hHHHHHhhcCCcEEEe--CCC
Confidence 5679999999999999999999997 6888885320 00 1123555444555543 233
Q ss_pred CHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEE
Q psy7300 155 SEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALII 191 (986)
Q Consensus 155 ~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~ 191 (986)
+.+.+.++|+||.+..= +.....-..+++.++|++.
T Consensus 62 ~~~~~~~~d~vV~sp~i-~~~~p~~~~a~~~~i~i~~ 97 (448)
T PRK03803 62 DCELLVQASEIIISPGL-ALDTPALRAAAAMGIEVIG 97 (448)
T ss_pred ChHHhcCCCEEEECCCC-CCCCHHHHHHHHCCCcEEE
Confidence 45667789999886521 1122234566788999885
No 370
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.57 E-value=2.1 Score=51.22 Aligned_cols=93 Identities=15% Similarity=0.032 Sum_probs=59.9
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+++++|+|+|+|-.|..+|+-|...|.. +++.|.+.... ... ...|++ .+ .....
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~~~~---------------~~~----~~~l~~---~~--~~~~~ 60 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCNAVE---------------ARE----VGALAD---AA--LLVET 60 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCCccc---------------chH----HHHHhh---cC--EEEeC
Confidence 4678999999999999999999999985 88888644310 001 112433 12 12222
Q ss_pred CCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEE
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALII 191 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~ 191 (986)
..+++.+.++|+||.+-.=. ....+-..+++.+||++.
T Consensus 61 ~~~~~~~~~~d~vV~SpgI~-~~~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 61 EASAQRLAAFDVVVKSPGIS-PYRPEALAAAARGTPFIG 98 (468)
T ss_pred CCChHHccCCCEEEECCCCC-CCCHHHHHHHHcCCcEEE
Confidence 33456678899998865311 122345567889999986
No 371
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=86.54 E-value=0.59 Score=52.04 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=0.0
Q ss_pred EEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE-
Q psy7300 465 YFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH- 542 (986)
Q Consensus 465 VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~- 542 (986)
|+|.|+ |.||+|+++.|+..|. .+|+++|.|.-...++.+.+ ++..|+-++...
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----~~lil~d~~E~~l~~l~~~l-------------------~~~~~~~~v~~~~ 56 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----KKLILFDRDENKLYELEREL-------------------RSRFPDPKVRFEI 56 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHHC-------------------HHHC--TTCEEEE
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----CeEEEeCCChhHHHHHHHHH-------------------hhcccccCccccc
Q ss_pred EcccCCcccccccccccc--CCCEEEEc
Q psy7300 543 ENRVGPETEKVYDDLFFE--SLDGIANA 568 (986)
Q Consensus 543 ~~~v~~~~~~~~~~~f~~--~~DvVi~a 568 (986)
..-+++-.+...-...++ +.|+|+.|
T Consensus 57 ~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 57 VPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp E--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred CceeecccCHHHHHHHHhhcCCCEEEEC
No 372
>PRK06223 malate dehydrogenase; Reviewed
Probab=86.51 E-value=2.8 Score=47.18 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDT 107 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~ 107 (986)
.||.|||+|.+|+.+|..++..|++++.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998779999996
No 373
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=86.49 E-value=3 Score=50.78 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=32.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
+++++|+|+|+||+|..+++.|+..|+ ++++++.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~ 411 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRT 411 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999999 89999864
No 374
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=86.43 E-value=3.5 Score=45.74 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=25.1
Q ss_pred cEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 464 KYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 464 ~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
+|+|.|+ |.+|.++++.|+..|-. -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~----~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD----AEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC----CEEEEecC
Confidence 5899997 89999999999987620 26777764
No 375
>PRK06436 glycerate dehydrogenase; Provisional
Probab=86.39 E-value=0.65 Score=52.32 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.|.+++|.|+|.|.||.++++.|...|+ ++..+|..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~------~V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM------NIYAYTRS 154 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 5899999999999999999998887787 88888854
No 376
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.38 E-value=2.7 Score=46.99 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHH---HHhhcCCCCEEEeecCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHT---NLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~---~L~~lNp~V~v~~~~~~ 153 (986)
+|+|+|+|++|+.+|..|..+| ..+++++ - ..+.+++.+ .+........+......
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g-~~V~~~~-------------------r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 60 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG-RDVTFLV-------------------R-PKRAKALRERGLVIRSDHGDAVVPGPVIT 60 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC-CceEEEe-------------------c-HHHHHHHHhCCeEEEeCCCeEEecceeec
Q ss_pred CCHhhhccccEEEEecCCHHHHHHHHHHHHHcCC-cEEEeecccc
Q psy7300 154 LSEAFIKKFRVVVLTNSTYDEQLAISQITHANDI-ALIIADTRGL 197 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~i-p~I~~~~~G~ 197 (986)
-.++....+|+||+|..+......+..+....+- .+|.....|+
T Consensus 61 ~~~~~~~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~ 105 (305)
T PRK12921 61 DPEELTGPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGI 105 (305)
T ss_pred CHHHccCCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCC
No 377
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.34 E-value=4.8 Score=44.79 Aligned_cols=117 Identities=19% Similarity=0.280 Sum_probs=73.4
Q ss_pred CcEEEEe-cChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcC------CCCCCCcHHHHHHHHHHhhCC
Q psy7300 463 LKYFVVG-AGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFR------PHDVQQPKSATAAKAIKVMNP 535 (986)
Q Consensus 463 ~~VlvvG-aGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~------~~diG~~Ka~~a~~~l~~~np 535 (986)
.+|||.| ||=|||..++.|...|. .++|+|+ .+|=+|..+-+ ..|+.- .+.+.+.+.+..|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~------~vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH------EVVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC------eEEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCC
Confidence 3688885 89999999999999998 8999984 44444444333 233332 2345555566666
Q ss_pred CceEEE-EEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCc-EEEEeecCCcceEE
Q psy7300 536 NVNITY-HENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKP-LLESGTLGTKGNSQ 602 (986)
Q Consensus 536 ~~~i~~-~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~p-li~~g~~G~~G~v~ 602 (986)
+.-|+- -...|+++.+.. .++++ .|+-.-+-|-+.|+++++. +|.|.|...+|.-.
T Consensus 69 daViHFAa~~~VgESv~~P--l~Yy~---------NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~ 126 (329)
T COG1087 69 DAVVHFAASISVGESVQNP--LKYYD---------NNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPT 126 (329)
T ss_pred CEEEECccccccchhhhCH--HHHHh---------hchHhHHHHHHHHHHhCCCEEEEecchhhcCCCC
Confidence 654432 122344332221 23343 3555556777888888874 99999988888643
No 378
>PRK06523 short chain dehydrogenase; Provisional
Probab=86.33 E-value=1.9 Score=46.63 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=45.8
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcH-HHHHHHHHHhhCCC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPK-SATAAKAIKVMNPN 536 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K-a~~a~~~l~~~np~ 536 (986)
++.+++|+|.|+ ||||.++++.|+..|. ++.+++.+.-+ ++.....+-..|+.... .+.+.+.+.+..+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~r~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA------RVVTTARSRPD--DLPEGVEFVAADLTTAEGCAAVARAVLERLGG 77 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC------EEEEEeCChhh--hcCCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 467889999996 8999999999999998 89999876422 22222333445665433 22233334333343
Q ss_pred ceE
Q psy7300 537 VNI 539 (986)
Q Consensus 537 ~~i 539 (986)
+.+
T Consensus 78 id~ 80 (260)
T PRK06523 78 VDI 80 (260)
T ss_pred CCE
Confidence 443
No 379
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.20 E-value=1 Score=51.12 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=48.6
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCC------eEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC----CC
Q psy7300 76 SDVLISGL-GGLGVEIAKNVILSGVK------SVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN----PY 144 (986)
Q Consensus 76 s~VlIiG~-gglGseiaknLvl~GVg------~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN----p~ 144 (986)
.||.|+|+ |.+|+.+|-.|+..|+- ++.|+|-..- +.|++..+.-|+... +.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~-----------------~~~a~g~a~Dl~~~~~~~~~~ 65 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQA-----------------LKALEGVAMELEDCAFPLLAE 65 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCc-----------------ccccceeehhhhhccccccCc
Confidence 58999999 99999999999998884 5999985210 111222222333332 23
Q ss_pred CEEEeecCCCCHhhhccccEEEEecC
Q psy7300 145 VSTKAYTGELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 145 V~v~~~~~~~~~~~l~~~dvVI~~~~ 170 (986)
+.|. .+ +.+-+++.|+||.|..
T Consensus 66 ~~i~--~~--~~~~~~daDivvitaG 87 (322)
T cd01338 66 IVIT--DD--PNVAFKDADWALLVGA 87 (322)
T ss_pred eEEe--cC--cHHHhCCCCEEEEeCC
Confidence 3433 22 3566889999998864
No 380
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.18 E-value=2.9 Score=48.40 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=29.2
Q ss_pred hcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 461 GKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 461 ~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.+++|+|.|+ |-||+++++.|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~------~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH------YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC------EEEEEEe
Confidence 5588999997 8899999999999887 8898885
No 381
>PRK06138 short chain dehydrogenase; Provisional
Probab=86.17 E-value=2.3 Score=45.58 Aligned_cols=34 Identities=35% Similarity=0.411 Sum_probs=29.5
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
|++++++|.|+ |+||.++++.|+..|. ++++++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~------~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA------RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC------eEEEecC
Confidence 56789999997 8999999999999887 7888764
No 382
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.17 E-value=1 Score=57.00 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=83.8
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCcc---ccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNR---QFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnR---qflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
++|.|||+|-+|+.++-.++..|+ .++++|.+.=.....-. +.|=..-.-|+...+.+.+.+.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~----- 404 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL------KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT----- 404 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC------cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-----
Confidence 479999999999999999999999 99999976422111000 0000000112222222222222221
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcC-CCHHHHHHHHHHHHHcCCc--EEEEeecCCcc-eEEEEeCCCCccccCC
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANAL-DNVEARIYMDRRCVYSRKP--LLESGTLGTKG-NSQVVVPHLTESYSSS 615 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~-Dn~~ar~~l~~~c~~~~~p--li~~g~~G~~G-~v~~~~p~~t~cy~c~ 615 (986)
.. + .+ +-+.++|+||.|+ .+.+.++.+-+..-..-.| ++-+-|++..- .+......-.-+..-+
T Consensus 405 -~~-------~--~~--~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~H 472 (737)
T TIGR02441 405 -PT-------L--DY--SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMH 472 (737)
T ss_pred -Ee-------C--CH--HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEe
Confidence 11 1 11 2358999999874 5677777655554444333 56555555331 0000011111122222
Q ss_pred CCCCCCCCCcccccCCCCcchhhHHHHHHHhhh
Q psy7300 616 QDPPEKSIPICTLKNFPNAIEHTLQWARDNFEG 648 (986)
Q Consensus 616 ~~~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~ 648 (986)
.-.|....|...+-.-|.+-..+++++.+++..
T Consensus 473 ff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~ 505 (737)
T TIGR02441 473 YFSPVDKMQLLEIITHDGTSKDTLASAVAVGLK 505 (737)
T ss_pred ccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 112333445555556666677778877776544
No 383
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.12 E-value=3.1 Score=47.28 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhc--------CCCCEEE
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQL--------NPYVSTK 148 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~l--------Np~V~v~ 148 (986)
+|.|+|+|.+|+.+|.+|+..| ..++++| |.....+.+.+. .......
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~-----------------------r~~~~~~~i~~~~~~~~~~~g~~~~~~ 61 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKG-VPVRLWA-----------------------RRPEFAAALAAERENREYLPGVALPAE 61 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCC-CeEEEEe-----------------------CCHHHHHHHHHhCcccccCCCCcCCCC
Q ss_pred eecCCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeec
Q psy7300 149 AYTGELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADT 194 (986)
Q Consensus 149 ~~~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~ 194 (986)
.....-..+.++++|+||.|.-+...+..+..+. .+..+|.+..
T Consensus 62 ~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~--~~~~vi~~~~ 105 (328)
T PRK14618 62 LYPTADPEEALAGADFAVVAVPSKALRETLAGLP--RALGYVSCAK 105 (328)
T ss_pred eEEeCCHHHHHcCCCEEEEECchHHHHHHHHhcC--cCCEEEEEee
No 384
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.00 E-value=1.6 Score=49.26 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=48.7
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCC-CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC
Q psy7300 77 DVLISGL-GGLGVEIAKNVILSGV-KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL 154 (986)
Q Consensus 77 ~VlIiG~-gglGseiaknLvl~GV-g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~ 154 (986)
+|.|||+ |.+|+.+|-.|+..|+ .++.|+|-.. ++..+--|+.-.+.+++.....+-
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~---------------------a~g~alDL~~~~~~~~i~~~~~~~ 60 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVN---------------------TPGVAADLSHINTPAKVTGYLGPE 60 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCc---------------------cceeehHhHhCCCcceEEEecCCC
Confidence 7999999 9999999999999997 6799999641 111111233333445666431110
Q ss_pred -CHhhhccccEEEEecC
Q psy7300 155 -SEAFIKKFRVVVLTNS 170 (986)
Q Consensus 155 -~~~~l~~~dvVI~~~~ 170 (986)
..+-+++.|+||.|..
T Consensus 61 ~~y~~~~daDivvitaG 77 (310)
T cd01337 61 ELKKALKGADVVVIPAG 77 (310)
T ss_pred chHHhcCCCCEEEEeCC
Confidence 1355789999998764
No 385
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=85.90 E-value=2.5 Score=53.07 Aligned_cols=84 Identities=21% Similarity=0.337 Sum_probs=51.4
Q ss_pred hhhhhchhHH--HHHHhhh--CCCccccccccccchhhhcccccccccccccCccchhhhccCHHHHHHHhcCcEEEEec
Q psy7300 395 NAVIGGIVAQ--EVMKACS--GKFHPIFQWLYFDAVECIDENIAETDAIVNGSRYEGQVAIFGKNFQEKLGKLKYFVVGA 470 (986)
Q Consensus 395 aA~iGGi~AQ--EvIKaiT--~kf~Pi~q~~~fD~~e~l~~~~~~~~~~~~~~rydrqi~~~G~~~q~~L~~~~VlvvGa 470 (986)
|.+.|-+..+ |++.... +.|+||..--.||- |-- .-|+. .+........|.+++|+|.|+
T Consensus 359 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-eyw----~~e~~-----------kl~~~~~~~~l~gkvvLVTGa 422 (676)
T TIGR02632 359 ARVAREFYVNAINVMRGAEAVSEYVSLPEQEAFDI-EYW----PLEEA-----------KLRRMPKEKTLARRVAFVTGG 422 (676)
T ss_pred hhhhHHHHHHHHHHHhhhhcccceecCchhhccch-hhh----hhhHH-----------hhccCCCCcCCCCCEEEEeCC
Confidence 4444555555 5565555 78888876555553 111 00110 000000112356788999996
Q ss_pred -ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 471 -GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 471 -GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
||||.++++.|+..|. ++.++|.+
T Consensus 423 sggIG~aiA~~La~~Ga------~Vvi~~r~ 447 (676)
T TIGR02632 423 AGGIGRETARRLAAEGA------HVVLADLN 447 (676)
T ss_pred CcHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 8999999999999987 88888743
No 386
>PRK07340 ornithine cyclodeaminase; Validated
Probab=85.89 E-value=1.7 Score=49.06 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=53.2
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHH-cCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCc
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAM-MGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNV 537 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~-~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~ 537 (986)
+...++++|+|+|+.|...++.+.. .|+ .++.|+|.+ ..|++..++.+...++
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~a~~~~~~~~-- 175 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPV-----RRVWVRGRT-------------------AASAAAFCAHARALGP-- 175 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhcCC--
Confidence 3456889999999999999999974 566 588887643 3567777777765432
Q ss_pred eEEEEEcccCCccccccccccccCCCEEEEcCCC
Q psy7300 538 NITYHENRVGPETEKVYDDLFFESLDGIANALDN 571 (986)
Q Consensus 538 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn 571 (986)
.+. +.+ . ++...++|+|++|+-+
T Consensus 176 ~~~-----~~~-~-----~~av~~aDiVitaT~s 198 (304)
T PRK07340 176 TAE-----PLD-G-----EAIPEAVDLVVTATTS 198 (304)
T ss_pred eeE-----ECC-H-----HHHhhcCCEEEEccCC
Confidence 222 111 1 3456899999999865
No 387
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=85.87 E-value=3.1 Score=52.10 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=33.0
Q ss_pred HHHHHHHhcCcEEEEec-ChhhHHHHHHHHHc-CCCcCCCCeEEEEeCCc
Q psy7300 454 KNFQEKLGKLKYFVVGA-GAIGCELLKNFAMM-GVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 454 ~~~q~~L~~~~VlvvGa-GgiG~e~lknLa~~-Gv~~g~~g~i~ivD~D~ 501 (986)
......-++++|+|.|+ |-||+++++.|... |. +++.+|...
T Consensus 307 ~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~------~V~~l~r~~ 350 (660)
T PRK08125 307 KPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY------EVYGLDIGS 350 (660)
T ss_pred cchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc------EEEEEeCCc
Confidence 34455567889999996 88999999999975 56 888888643
No 388
>PLN02240 UDP-glucose 4-epimerase
Probab=85.85 E-value=6 Score=44.99 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=29.1
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q psy7300 73 MASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDT 107 (986)
Q Consensus 73 L~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~ 107 (986)
|.+++|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 5568999998 48899999999999995 7888874
No 389
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.84 E-value=3.1 Score=45.57 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=43.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVK--SVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL 154 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg--~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~ 154 (986)
+|.|||+|.+|..+++.|...|.. .+.++|.+ ..|++. +.+..+.+.+. . +
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~-------------------~~~~~~----l~~~~~~~~~~--~-~- 54 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN-------------------AQIAAR----LAERFPKVRIA--K-D- 54 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCC-------------------HHHHHH----HHHHcCCceEe--C-C-
Confidence 699999999999999999998852 23333321 123333 32322333321 1 1
Q ss_pred CHhhhccccEEEEecCCHHH
Q psy7300 155 SEAFIKKFRVVVLTNSTYDE 174 (986)
Q Consensus 155 ~~~~l~~~dvVI~~~~~~~~ 174 (986)
..+.+++.|+|+.|..+...
T Consensus 55 ~~~~~~~aDvVilav~p~~~ 74 (258)
T PRK06476 55 NQAVVDRSDVVFLAVRPQIA 74 (258)
T ss_pred HHHHHHhCCEEEEEeCHHHH
Confidence 23556789999999975333
No 390
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.78 E-value=1.5 Score=50.79 Aligned_cols=74 Identities=20% Similarity=0.173 Sum_probs=0.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+...+|+|+|+|.+|..+++.+...|+ +++++|. +.+.+.+.-..+...+.......
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~----------------------~~~~~~~l~~~~g~~v~~~~~~~ 221 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDI----------------------NIDRLRQLDAEFGGRIHTRYSNA 221 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEEC----------------------CHHHHHHHHHhcCceeEeccCCH
Q ss_pred CCCHhhhccccEEEEec
Q psy7300 153 ELSEAFIKKFRVVVLTN 169 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~ 169 (986)
..-.+.+.++|+||.|.
T Consensus 222 ~~l~~~l~~aDvVI~a~ 238 (370)
T TIGR00518 222 YEIEDAVKRADLLIGAV 238 (370)
T ss_pred HHHHHHHccCCEEEEcc
No 391
>PRK06139 short chain dehydrogenase; Provisional
Probab=85.70 E-value=1.7 Score=49.53 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=31.0
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~------~Vvl~~R~ 40 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA------RLVLAARD 40 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC------EEEEEECC
Confidence 467789999998 8999999999999998 78888743
No 392
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=85.58 E-value=5.8 Score=44.60 Aligned_cols=33 Identities=30% Similarity=0.253 Sum_probs=27.5
Q ss_pred cCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 462 KLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 462 ~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+++|+|.|+ |+||+.+++.|+..|. ++++++.|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~------~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY------TINATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC------EEEEEEcC
Confidence 468999996 8999999999999887 77776544
No 393
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=85.55 E-value=3 Score=46.84 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=28.4
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 78 VLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 78 VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
|.|||+|.+|+.+|-.|++.|..+++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 6799999999999999999987799999976
No 394
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=85.55 E-value=1.1 Score=44.69 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.5
Q ss_pred EEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 465 YFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 465 VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
|+|+|+|++|+-++-.|+..|. ++++++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~------~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH------DVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC------EEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCC------ceEEEEccc
Confidence 7899999999999999999888 899887544
No 395
>PRK12367 short chain dehydrogenase; Provisional
Probab=85.53 E-value=1.2 Score=48.52 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=35.6
Q ss_pred HHHHHHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 455 NFQEKLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 455 ~~q~~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
=.|.++.+++++|.|+ ||||.++++.|+..|. ++++++.+.
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~------~Vi~~~r~~ 48 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA------KVIGLTHSK 48 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC------EEEEEECCc
Confidence 3588999999999997 7899999999999998 888887653
No 396
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=85.52 E-value=0.71 Score=48.00 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=57.5
Q ss_pred cEEEEecChhhHH-HHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 464 KYFVVGAGAIGCE-LLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 464 ~VlvvGaGgiG~e-~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
||.+||+|+.-.. .+..+++.-=. -..+.|.++|-|. .-|.. =...+++.+++.++.++|++.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~-l~~~ei~L~Did~---~RL~~------------~~~~~~~~~~~~~~~~~v~~t 64 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEE-LSGSEIVLMDIDE---ERLEI------------VERLARRMVEEAGADLKVEAT 64 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTT-STEEEEEEE-SCH---HHHHH------------HHHHHHHHHHHCTTSSEEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCcc-CCCcEEEEEcCCH---HHHHH------------HHHHHHHHHHhcCCCeEEEEe
Confidence 6899999987655 33333332111 1225899998776 11111 013455666778889988776
Q ss_pred EcccCCccccccccccccCCCEEEEcC--CCHHHHHHHHHHHHHcCCc
Q psy7300 543 ENRVGPETEKVYDDLFFESLDGIANAL--DNVEARIYMDRRCVYSRKP 588 (986)
Q Consensus 543 ~~~v~~~~~~~~~~~f~~~~DvVi~a~--Dn~~ar~~l~~~c~~~~~p 588 (986)
... .+.++++|+||++. +..++|..=.+.+.++|+.
T Consensus 65 td~----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~ 102 (183)
T PF02056_consen 65 TDR----------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIV 102 (183)
T ss_dssp SSH----------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT
T ss_pred CCH----------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCc
Confidence 543 35678999999975 3455555444555555543
No 397
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=85.40 E-value=3 Score=47.34 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=30.2
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++|+|.|+ |.||+++++.|+..|. +++++|.+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~------~V~~~~r~ 39 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY------EVHGIIRR 39 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC------EEEEEecc
Confidence 45688999996 8899999999999987 88888754
No 398
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=85.37 E-value=1.7 Score=55.80 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=37.1
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCc
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLN 508 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLn 508 (986)
-.++||+|||+|..|-++|..|++.|. ++||+|...++.-|.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh------~Vtv~E~~~i~gl~~~ 423 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH------NVTAIDGLKITLLPFD 423 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC------eEEEEccccccccccc
Confidence 368899999999999999999999998 9999998776655433
No 399
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.37 E-value=2.1 Score=49.29 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=29.5
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
+|+|+|+|.||.-.+..+.+.|. ..|+++|.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-----~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-----SVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCCCH
Confidence 79999999999999999999998 6999987654
No 400
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.35 E-value=1.6 Score=54.07 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=62.7
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEE
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITY 541 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~ 541 (986)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++. + ...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~----~~~~~--g--~~v 446 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM------RITVLERDIS-------------------AVN----LMRKY--G--YKV 446 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHH----HHHhC--C--CeE
Confidence 5689999999999999999999998 8999998861 111 22222 1 223
Q ss_pred EEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcC
Q psy7300 542 HENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSR 586 (986)
Q Consensus 542 ~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~ 586 (986)
+..+..+ .+.....-.+++|.|+.++||.+.-..+-..+++++
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 447 YYGDATQ--LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred EEeeCCC--HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 4333332 222233446789999999999988877777777653
No 401
>PRK12939 short chain dehydrogenase; Provisional
Probab=85.33 E-value=3.2 Score=44.39 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=29.1
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
+.+++|+|.|+ |+||.++++.|+..|. ++.+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~------~v~~~~r 39 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA------TVAFNDG 39 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC------EEEEEeC
Confidence 56788999996 8999999999999987 7777753
No 402
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=85.33 E-value=6.4 Score=42.02 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=26.6
Q ss_pred CcEEEEe-cChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 463 LKYFVVG-AGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 463 ~~VlvvG-aGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.+|.|+| +|.+|+.+++.|+..|. +++++|.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~------~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN------KIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC------EEEEEEc
Confidence 3699997 89999999999999885 7888764
No 403
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.25 E-value=5.7 Score=44.09 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=49.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC---CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGV---KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GV---g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
+|.|||+|.+|..+++.|...|. .++.+++.+.- .+++. +....+.+.+. .+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~~~----l~~~~~~~~~~---~~ 57 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHFNQ----LYDKYPTVELA---DN 57 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHHHH----HHHHcCCeEEe---CC
Confidence 69999999999999999999983 46777765320 12222 22222333321 11
Q ss_pred CCHhhhccccEEEEecCCHHHHHHHHHH
Q psy7300 154 LSEAFIKKFRVVVLTNSTYDEQLAISQI 181 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~~~~~~~~i~~~ 181 (986)
..+.+.++|+||+|.-+......+.++
T Consensus 58 -~~e~~~~aDvVilavpp~~~~~vl~~l 84 (277)
T PRK06928 58 -EAEIFTKCDHSFICVPPLAVLPLLKDC 84 (277)
T ss_pred -HHHHHhhCCEEEEecCHHHHHHHHHHH
Confidence 235677899999998765555445544
No 404
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=85.21 E-value=6.4 Score=37.22 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=24.8
Q ss_pred cEEEEcCChhHHHHHHHHHHh--CCCeEEEEeCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILS--GVKSVTLHDTT 108 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~--GVg~itlvD~d 108 (986)
||+|||+|..|...+..+... ++.=..++|.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~ 35 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD 35 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 799999999999999999887 34333466653
No 405
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=85.21 E-value=1.8 Score=48.95 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=29.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTA 109 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~ 109 (986)
+.+|+|+|+|++|+-+|..|..+| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 458999999999999999999999 4788888654
No 406
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.21 E-value=6.5 Score=43.60 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=50.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCC---CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGV---KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GV---g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
+.+|.+||+|-+|..++++|...|. ..|+++|.+. .+++ .+.+.. .+.+ ..
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~-------------------~~~~----~l~~~~-g~~~--~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV-------------------SNLK----NASDKY-GITI--TT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH-------------------HHHH----HHHHhc-CcEE--eC
Confidence 4579999999999999999999985 3466655321 2222 232211 2322 21
Q ss_pred CCCCHhhhccccEEEEecCCHHHHHHHHHHH
Q psy7300 152 GELSEAFIKKFRVVVLTNSTYDEQLAISQIT 182 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c 182 (986)
+ ..+.+++.|+||+|.-+......+.++.
T Consensus 56 -~-~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 -N-NNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -C-cHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 1 3456788999999998655444455544
No 407
>PLN00016 RNA-binding protein; Provisional
Probab=85.18 E-value=3.9 Score=47.42 Aligned_cols=114 Identities=21% Similarity=0.327 Sum_probs=68.6
Q ss_pred HHHHHhhcCcEEEE----cC-ChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC
Q psy7300 68 DAMRRMASSDVLIS----GL-GGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN 142 (986)
Q Consensus 68 ~~q~kL~~s~VlIi----G~-gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN 142 (986)
..-......+|||+ |. |-+|+.+++.|+..|. ++++++.+.-....+.. . + ...+.++.
T Consensus 45 ~~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~------~----~-----~~~~~~l~ 108 (378)
T PLN00016 45 AAAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKK------E----P-----FSRFSELS 108 (378)
T ss_pred hhhcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhcc------C----c-----hhhhhHhh
Confidence 34445566789999 75 7799999999999995 78888865321110100 0 0 00111111
Q ss_pred -CCCEEEeecCCCC--Hhhh--ccccEEEEecC-CHHHHHHHHHHHHHcCC-cEEEeecccceE
Q psy7300 143 -PYVSTKAYTGELS--EAFI--KKFRVVVLTNS-TYDEQLAISQITHANDI-ALIIADTRGLFA 199 (986)
Q Consensus 143 -p~V~v~~~~~~~~--~~~l--~~~dvVI~~~~-~~~~~~~i~~~c~~~~i-p~I~~~~~G~~G 199 (986)
+.+ +....++. .+.+ .++|+||.+.. .......+-+.|++.++ .||.+++.|.||
T Consensus 109 ~~~v--~~v~~D~~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg 170 (378)
T PLN00016 109 SAGV--KTVWGDPADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYK 170 (378)
T ss_pred hcCc--eEEEecHHHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcC
Confidence 122 22333332 2233 36899998764 34445577788998888 488888888665
No 408
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=85.15 E-value=3.7 Score=43.71 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=52.6
Q ss_pred CcEEEEecChhhHHHHHHHHHcC---CCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMG---VGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~G---v~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
.+|.|||||+||..+++.+- -| + .-+.+. |-+..|+..+.+.+...-+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~-~~~~~~-----e~v~v~-------------------D~~~ek~~~~~~~~~~~~~---- 51 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVR-DGRVDF-----ELVAVY-------------------DRDEEKAKELEASVGRRCV---- 51 (255)
T ss_pred CeEEEEeccHHHHHHHHHHh-cCCcce-----eEEEEe-------------------cCCHHHHHHHHhhcCCCcc----
Confidence 36899999999999998664 33 2 122222 3334555444433322211
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEee
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGT 594 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~ 594 (986)
..+ +++....|+|+.|..-...|.|+-+ ..+.|+++|-..+
T Consensus 52 ----s~i---------de~~~~~DlvVEaAS~~Av~e~~~~-~L~~g~d~iV~SV 92 (255)
T COG1712 52 ----SDI---------DELIAEVDLVVEAASPEAVREYVPK-ILKAGIDVIVMSV 92 (255)
T ss_pred ----ccH---------HHHhhccceeeeeCCHHHHHHHhHH-HHhcCCCEEEEec
Confidence 111 4666899999999655555555554 4567777665543
No 409
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=85.14 E-value=6 Score=48.24 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=60.9
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC-------C
Q psy7300 72 RMASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN-------P 143 (986)
Q Consensus 72 kL~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN-------p 143 (986)
......|+|.| .|++|..+++.|+..|. ++++++.+. .+++.+.+.+.++. +
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~ 136 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQP 136 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhccccccccc
Confidence 34567799999 58999999999999996 566665432 13333333332211 1
Q ss_pred CCEEEeecCCCC-H----hhhccccEEEEecCCH---------------HHHHHHHHHHHHcCC-cEEEeeccc
Q psy7300 144 YVSTKAYTGELS-E----AFIKKFRVVVLTNSTY---------------DEQLAISQITHANDI-ALIIADTRG 196 (986)
Q Consensus 144 ~V~v~~~~~~~~-~----~~l~~~dvVI~~~~~~---------------~~~~~i~~~c~~~~i-p~I~~~~~G 196 (986)
..++..+..++. . +.+.+.|+||.+.... .....+.+.|+..++ .||...+.|
T Consensus 137 ~~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig 210 (576)
T PLN03209 137 VEKLEIVECDLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG 210 (576)
T ss_pred cCceEEEEecCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence 123444444442 2 2467889988875321 112344566666665 467666655
No 410
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=85.07 E-value=4.3 Score=47.74 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=34.7
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccc
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQ 510 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRq 510 (986)
+|.|||+|-+|..++.+|+..|. +++++|.|.=....|+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~------~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH------EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC------eEEEEECCHHHHHHhhcC
Confidence 69999999999999999999998 899999876555556554
No 411
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=85.05 E-value=7.4 Score=44.48 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=28.3
Q ss_pred hcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 461 GKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 461 ~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
++++|+|.|+ |.||+.+++.|+..|. ++++++.+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~------~V~~~~r~ 43 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY------TVHATLRD 43 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4568999995 8899999999999987 77777643
No 412
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=84.98 E-value=1.8 Score=48.74 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=47.2
Q ss_pred EEcCChhHHHHHHHHHHhCC-CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC----CCCEEEeecCCC
Q psy7300 80 ISGLGGLGVEIAKNVILSGV-KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN----PYVSTKAYTGEL 154 (986)
Q Consensus 80 IiG~gglGseiaknLvl~GV-g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN----p~V~v~~~~~~~ 154 (986)
|||+|.+|+.+|-.|+..|+ .+|.|+|-. ..+++..+.-|+... ..++|.. .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~--~-- 57 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN-------------------KDKAEGEAMDLQHAASFLPTPKKIRS--G-- 57 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence 68999999999999999998 569999852 123334444444433 3345542 2
Q ss_pred CHhhhccccEEEEecC
Q psy7300 155 SEAFIKKFRVVVLTNS 170 (986)
Q Consensus 155 ~~~~l~~~dvVI~~~~ 170 (986)
+.+-+++.|+||.+..
T Consensus 58 ~~~~~~daDivVitag 73 (299)
T TIGR01771 58 DYSDCKDADLVVITAG 73 (299)
T ss_pred CHHHHCCCCEEEECCC
Confidence 3467889999999764
No 413
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=84.95 E-value=0.98 Score=53.26 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=32.9
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.+.+++|+|+|+|.+|..+++.|...|+ .+++++|.+
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~-----~~V~v~~rs 213 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGV-----GKILIANRT 213 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCC-----CEEEEEeCC
Confidence 3778999999999999999999999998 589998753
No 414
>PRK12829 short chain dehydrogenase; Provisional
Probab=84.94 E-value=2.4 Score=45.87 Aligned_cols=38 Identities=29% Similarity=0.523 Sum_probs=32.4
Q ss_pred HHHHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 457 QEKLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 457 q~~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
...+++++|+|.|+ |++|..+++.|+..|. ++++++.+
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~------~V~~~~r~ 44 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGA------RVHVCDVS 44 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 34578899999997 8999999999999987 78888743
No 415
>PLN02214 cinnamoyl-CoA reductase
Probab=84.91 E-value=6.5 Score=44.90 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=61.9
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCce
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVN 538 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~ 538 (986)
+++++|+|.|+ |.||+.+++.|+..|. +++.++.+. +++ +.. ....+.... -+
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~------~V~~~~r~~---~~~--------------~~~-~~~~~~~~~--~~ 61 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY------TVKGTVRNP---DDP--------------KNT-HLRELEGGK--ER 61 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC------EEEEEeCCc---hhh--------------hHH-HHHHhhCCC--Cc
Confidence 45778999998 9999999999999887 777765431 110 000 011111111 13
Q ss_pred EEEEEcccCCccccccccccccCCCEEEEcCC------------CHHHHHHHHHHHHHcCC-cEEEEeec
Q psy7300 539 ITYHENRVGPETEKVYDDLFFESLDGIANALD------------NVEARIYMDRRCVYSRK-PLLESGTL 595 (986)
Q Consensus 539 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~D------------n~~ar~~l~~~c~~~~~-pli~~g~~ 595 (986)
++.+..++.... .+ ...+.++|+||.+.- |+.+-..+-+.|.++++ .+|..++.
T Consensus 62 ~~~~~~Dl~d~~--~~-~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~ 128 (342)
T PLN02214 62 LILCKADLQDYE--AL-KAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSI 128 (342)
T ss_pred EEEEecCcCChH--HH-HHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 444555554321 11 345678898887642 22233455667777775 47776654
No 416
>PRK06125 short chain dehydrogenase; Provisional
Probab=84.91 E-value=2.8 Score=45.47 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=30.4
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~------~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC------HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 56789999998 7899999999999987 88888754
No 417
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.85 E-value=1 Score=50.95 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=30.3
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
..+|+|+|+|++|+-++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~------~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF------DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC------eEEEEEeCC
Confidence 4689999999999999999999987 889987665
No 418
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.83 E-value=2.1 Score=48.05 Aligned_cols=118 Identities=13% Similarity=0.137 Sum_probs=62.5
Q ss_pred cEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhh-CCCceEEEE
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVM-NPNVNITYH 542 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~-np~~~i~~~ 542 (986)
+|.+||+|.+|..++++|+..|. .++++|.+.=...-+ .+.|-..+....+.+++. ++++-+.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~------~v~v~dr~~~~~~~~--------~~~g~~~~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH------EVVGYDVNQEAVDVA--------GKLGITARHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC------EEEEEECCHHHHHHH--------HHCCCeecCCHHHHHHhCCCCCEEEEEe
Confidence 69999999999999999999987 899998753110001 011211111122222221 133334333
Q ss_pred EcccCCcccccccc--ccccCCCEEEEcCC-CHHHHHHHHHHHHHcCCcEEEEeecCC
Q psy7300 543 ENRVGPETEKVYDD--LFFESLDGIANALD-NVEARIYMDRRCVYSRKPLLESGTLGT 597 (986)
Q Consensus 543 ~~~v~~~~~~~~~~--~f~~~~DvVi~a~D-n~~ar~~l~~~c~~~~~pli~~g~~G~ 597 (986)
... +..+.+++. ..+..=.+||++.. .+..-+.+.+.+...++.++++.+.|.
T Consensus 68 p~~--~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~ 123 (299)
T PRK12490 68 PAG--EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG 123 (299)
T ss_pred cCc--hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence 322 011111111 12233357777633 344444555666677777888777765
No 419
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.83 E-value=1 Score=50.20 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=28.8
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.+|+|+|+|++|+.++..|+..|. +++++|.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~------~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH------DVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 379999999999999999999886 89999864
No 420
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.75 E-value=3.5 Score=46.45 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=40.8
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEE
Q psy7300 72 RMASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTK 148 (986)
Q Consensus 72 kL~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~ 148 (986)
.|++++|+|.| .+|+|.++|+.|+..|. ++.+++.+ ..+++.+.+.|.+.++..++.
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~ 68 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLS 68 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceE
Confidence 35678899998 67899999999999996 67777642 135555666666666544443
No 421
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=84.73 E-value=3.6 Score=51.14 Aligned_cols=83 Identities=19% Similarity=0.362 Sum_probs=60.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC
Q psy7300 75 SSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL 154 (986)
Q Consensus 75 ~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~ 154 (986)
+.+|+|+|+|.+|..+++.|...|+ .++++|.|.- |++. +++. ..+ ++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~----~~~~--g~~--v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIET----LRKF--GMK--VFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHH----HHhc--CCe--EEEEeC
Confidence 5799999999999999999999998 6899997652 3333 2222 222 333333
Q ss_pred -CHhh-----hccccEEEEecCCHHHHHHHHHHHHHc
Q psy7300 155 -SEAF-----IKKFRVVVLTNSTYDEQLAISQITHAN 185 (986)
Q Consensus 155 -~~~~-----l~~~dvVI~~~~~~~~~~~i~~~c~~~ 185 (986)
+++. ++++++||.++++.+....+...+|++
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 3444 358899999999888888888888876
No 422
>PRK06172 short chain dehydrogenase; Provisional
Probab=84.72 E-value=2.3 Score=45.91 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=30.0
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
|.+++|+|.|+ |+||.++++.|+..|. ++.+++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~------~v~~~~r~ 40 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA------KVVVADRD 40 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 56789999997 7999999999999987 78887643
No 423
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=84.68 E-value=3.9 Score=45.19 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=25.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhC--CCeEEEEeCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSG--VKSVTLHDTT 108 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~G--Vg~itlvD~d 108 (986)
+|.|||+|.+|..+++.|...+ +.-+.++|.+
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 7999999999999999998764 4445566654
No 424
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=84.67 E-value=2.3 Score=49.52 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=61.8
Q ss_pred hcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 461 GKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 461 ~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
..+||+|+|| |.+|.|+++.|...-. .+|+.+-.+ ...|+. +...+|.+.-
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~-----~el~~l~s~---------------~saG~~--------i~~~~~~l~~ 88 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD-----FEITVMTAD---------------RKAGQS--------FGSVFPHLIT 88 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC-----CeEEEEECh---------------hhcCCC--------chhhCccccC
Confidence 5569999998 8899999999997732 377776322 222322 1122232211
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeecC
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLG 596 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~G 596 (986)
... ..+. ..+..-+++.|+|+.|+.+..++.++..+ ..++++|+.++..
T Consensus 89 ~~~-~~~~-----~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlSs~f 137 (381)
T PLN02968 89 QDL-PNLV-----AVKDADFSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLSADF 137 (381)
T ss_pred ccc-ccee-----cCCHHHhcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcCchh
Confidence 000 0011 01122248899999999998888888885 4678888877543
No 425
>PRK06940 short chain dehydrogenase; Provisional
Probab=84.65 E-value=2.5 Score=46.58 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=26.8
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
++.++|.|+||||.++++.|+ .|. ++.++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~------~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK------KVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC------EEEEEeCC
Confidence 456889999999999999996 676 88888754
No 426
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=84.57 E-value=4.4 Score=46.15 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCC------CCEEEee
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNP------YVSTKAY 150 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp------~V~v~~~ 150 (986)
+|+|+|+|.+|+.+|..|..+| .+++++|.+ .+.+.+.+.-..... .+.....
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r~--------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 62 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAG-ADVTLIGRA--------------------RIGDELRAHGLTLTDYRGRDVRVPPSAI 62 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcC-CcEEEEecH--------------------HHHHHHHhcCceeecCCCcceeccccee
Q ss_pred cCCCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCC-cEEEeecccc
Q psy7300 151 TGELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDI-ALIIADTRGL 197 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~i-p~I~~~~~G~ 197 (986)
...-+.+.+..+|+||.|..+......+..+.....- .+|.....|+
T Consensus 63 ~~~~~~~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 63 AFSTDPAALATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred EeccChhhccCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCC
No 427
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.53 E-value=1.1 Score=50.13 Aligned_cols=35 Identities=23% Similarity=0.512 Sum_probs=31.6
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~------~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA------RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678999999999999999999999887 8888874
No 428
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.49 E-value=3.1 Score=47.28 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=0.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCc---ccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSS---QFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~r---qf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
+|.|+|+|++|+.++..|..+| ..+++++.+.-....++. +.-+... ..+.+.+.+. .+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~~~~~~i~~~~~~~~~~~~--------------~~~~~~i~~~---~~ 63 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNHTTFESINTKRKNLKYLPT--------------CHLPDNISVK---SA 63 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHcCCCcccCCC--------------CcCCCCeEEe---CC
Q ss_pred CCHhhhccccEEEEecCCHHHHHHHHHHHH-HcCCc-EEEeecccc
Q psy7300 154 LSEAFIKKFRVVVLTNSTYDEQLAISQITH-ANDIA-LIIADTRGL 197 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~-~~~ip-~I~~~~~G~ 197 (986)
..+.....+|+||++.-+......+..+.. ..+-. .|.+.+.|+
T Consensus 64 ~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 64 IDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
No 429
>PLN02688 pyrroline-5-carboxylate reductase
Probab=84.43 E-value=3.3 Score=45.40 Aligned_cols=145 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred CcEEEEecChhhHHHHHHHHHcCC--CcCCCCeEEEE-eCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGV--GAGPGGQIFVT-DMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv--~~g~~g~i~iv-D~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i 539 (986)
.||.+||+|.+|+.+++.|...|. . ..|+++ |.+. .|++.+.+. .+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~----~~i~v~~~r~~-------------------~~~~~~~~~--------g~ 49 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPP----SRISTADDSNP-------------------ARRDVFQSL--------GV 49 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCc----ceEEEEeCCCH-------------------HHHHHHHHc--------CC
Q ss_pred EEEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHH--HHHcCCcEEEEeecCCcceEEEEeCCCCcccc-CCC
Q psy7300 540 TYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRR--CVYSRKPLLESGTLGTKGNSQVVVPHLTESYS-SSQ 616 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~--c~~~~~pli~~g~~G~~G~v~~~~p~~t~cy~-c~~ 616 (986)
...... .+..+++|+||.|+.....+..+... ....+..+|..-..-....+.-..+.. ...+ .+.
T Consensus 50 ~~~~~~----------~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~ 118 (266)
T PLN02688 50 KTAASN----------TEVVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPN 118 (266)
T ss_pred EEeCCh----------HHHHhcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCC
Q ss_pred CCCCCCCCcccccCCCCcchhhHHHHHHHhhhH
Q psy7300 617 DPPEKSIPICTLKNFPNAIEHTLQWARDNFEGI 649 (986)
Q Consensus 617 ~~~~~~~p~Ctl~~~P~~~~h~i~wa~~~F~~~ 649 (986)
-|....-..+.+-..+....+..+..+++|+.+
T Consensus 119 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~ 151 (266)
T PLN02688 119 TPCLVGEAASVMSLGPAATADDRDLVATLFGAV 151 (266)
T ss_pred cHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhC
No 430
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.43 E-value=1.9 Score=48.46 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=30.1
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.|.+++++|.|+ ||||.++++.|+..|. ++.++|.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga------~Vv~~~~ 44 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA------TVVVNDV 44 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEecC
Confidence 467788999997 7899999999999987 7888764
No 431
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=84.42 E-value=2 Score=50.69 Aligned_cols=93 Identities=22% Similarity=0.335 Sum_probs=59.4
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
.+.+.+|+|+|+|..|..+++.|..-| ..+++.|.+... .+... ....-+.+++. .
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~~~--------------------~~~~~~~i~~~--~ 59 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGLAA--------------------QPLLLEGIEVE--L 59 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc-cchhh--------------------hhhhccCceee--c
Confidence 344899999999999999999999999 589999976643 21111 11112233333 3
Q ss_pred CCCCHhhhccccEEEEecC-CHHHHHHHHHHHHHcCCcEE
Q psy7300 152 GELSEAFIKKFRVVVLTNS-TYDEQLAISQITHANDIALI 190 (986)
Q Consensus 152 ~~~~~~~l~~~dvVI~~~~-~~~~~~~i~~~c~~~~ip~I 190 (986)
...+.+.+..+|+||..-. ++... +-..+++.|+|++
T Consensus 60 g~~~~~~~~~~d~vV~SPGi~~~~p--~v~~A~~~gi~i~ 97 (448)
T COG0771 60 GSHDDEDLAEFDLVVKSPGIPPTHP--LVEAAKAAGIEII 97 (448)
T ss_pred CccchhccccCCEEEECCCCCCCCH--HHHHHHHcCCcEE
Confidence 3333366788999998642 21111 4455667777765
No 432
>PTZ00117 malate dehydrogenase; Provisional
Probab=84.42 E-value=1.1 Score=50.74 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.5
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
++.||.|||+|.+|..++-.|++.|+ ..+.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-----~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-----GDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-----CeEEEEECC
Confidence 56799999999999999999999997 589999964
No 433
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.41 E-value=3.8 Score=49.18 Aligned_cols=95 Identities=17% Similarity=0.268 Sum_probs=68.1
Q ss_pred hhccccchhc-ccHHHHHHhhcCcEEEEcCC-hhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHH
Q psy7300 55 EGLYSRQLYV-LGHDAMRRMASSDVLISGLG-GLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAE 132 (986)
Q Consensus 55 ~~~y~Rqi~l-~G~~~q~kL~~s~VlIiG~g-glGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~ 132 (986)
+++..|+--- --..-+.-+.+++|+|-|.| +.|+|+++.++..+.++|.++|.|- ++-.
T Consensus 229 eDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~ 289 (588)
T COG1086 229 EDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLY 289 (588)
T ss_pred HHHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHH
Confidence 3556665432 33455677899999999955 5899999999999999999999754 3445
Q ss_pred HHHHHHhhcCCCCEEEeecCCC-CH----hhhcc--ccEEEEe
Q psy7300 133 VSHTNLSQLNPYVSTKAYTGEL-SE----AFIKK--FRVVVLT 168 (986)
Q Consensus 133 a~~~~L~~lNp~V~v~~~~~~~-~~----~~l~~--~dvVI~~ 168 (986)
.+...|++..|..++..+-.++ +. ..+++ .|+|+-+
T Consensus 290 ~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 290 LIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred HHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 5667788888877777776665 22 23444 6777644
No 434
>PLN00106 malate dehydrogenase
Probab=84.40 E-value=3.6 Score=46.82 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHhCC-CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEe-e
Q psy7300 74 ASSDVLISGL-GGLGVEIAKNVILSGV-KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKA-Y 150 (986)
Q Consensus 74 ~~s~VlIiG~-gglGseiaknLvl~GV-g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~-~ 150 (986)
...||+|+|+ |.||+.+|-.|+..|+ +++.|+|-+. ....-.. |....+.+.+.. .
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~------~~g~a~D---------------l~~~~~~~~i~~~~ 75 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN------TPGVAAD---------------VSHINTPAQVRGFL 75 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC------CCeeEch---------------hhhCCcCceEEEEe
Q ss_pred cCCCCHhhhccccEEEEe
Q psy7300 151 TGELSEAFIKKFRVVVLT 168 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~ 168 (986)
...--.+.+++.|+||.+
T Consensus 76 ~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 76 GDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCCHHHHcCCCCEEEEe
No 435
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=84.34 E-value=2.2 Score=45.82 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=29.7
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
|++++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~------~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA------KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEecCC
Confidence 46788999996 8899999999999887 78887654
No 436
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.33 E-value=3.2 Score=44.27 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=28.7
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEE-eC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVT-DM 499 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~iv-D~ 499 (986)
|.+++++|+|+ |+||.++++.|+..|. +++++ +.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~------~v~~~~~r 38 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGA------KVVIAYDI 38 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 56788999996 8999999999999987 67666 53
No 437
>PRK05442 malate dehydrogenase; Provisional
Probab=84.22 E-value=1.4 Score=50.18 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=28.7
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCC-C-----eEEEEeC
Q psy7300 76 SDVLISGL-GGLGVEIAKNVILSGV-K-----SVTLHDT 107 (986)
Q Consensus 76 s~VlIiG~-gglGseiaknLvl~GV-g-----~itlvD~ 107 (986)
.||.|+|+ |.+|+.+|-.|+..|+ + +|.|+|-
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 58999998 9999999999999888 3 6999985
No 438
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=84.18 E-value=1.3 Score=47.36 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=63.5
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeec
Q psy7300 72 RMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYT 151 (986)
Q Consensus 72 kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~ 151 (986)
.|+..+|+|.|+|.+|..+|+.|...|.+-+.+.|.+- .++.+ |-.-.+ +.+..++......+.. .
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g---------~i~~~---Gld~~~-l~~~~~~~~~~~~~~~-~ 85 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG---------YIYDP---GITTEE-LINYAVALGGSARVKV-Q 85 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC---------cEECC---CCCHHH-HHHHHHhhCCccccCc-c
Confidence 57889999999999999999999999999999999654 23332 444222 2333332221111110 0
Q ss_pred CCCC-Hhhh-ccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 152 GELS-EAFI-KKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 152 ~~~~-~~~l-~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
+.++ ++++ .++|++|-|...... =.+-+.+.+.++|..+..|
T Consensus 86 ~~~~~~~l~~~~~DVlipaA~~~~i---~~~~a~~l~a~~V~e~AN~ 129 (217)
T cd05211 86 DYFPGEAILGLDVDIFAPCALGNVI---DLENAKKLKAKVVAEGANN 129 (217)
T ss_pred cccCcccceeccccEEeeccccCcc---ChhhHhhcCccEEEeCCCC
Confidence 1122 2333 378999987643211 1123344557777766555
No 439
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=84.17 E-value=1.2 Score=45.22 Aligned_cols=38 Identities=26% Similarity=0.493 Sum_probs=29.9
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCcc
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLI 502 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~I 502 (986)
.|..++++|+|.|-+|.-+|+.|..+|. +++|+|-|.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga------~V~V~e~DPi 57 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA------RVTVTEIDPI 57 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-------EEEEE-SSHH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC------EEEEEECChH
Confidence 5678899999999999999999999998 9999998874
No 440
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=84.16 E-value=1.1 Score=52.78 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=29.9
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
.+|+|||+|-+|||+|..|++.|+ +++|+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~------~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV------PVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC------cEEEEeccc
Confidence 379999999999999999999999 999998643
No 441
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=84.13 E-value=2.8 Score=46.11 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=28.0
Q ss_pred EEEEec-ChhhHHHHHHHHHcC--CCcCCCCeEEEEeCCc
Q psy7300 465 YFVVGA-GAIGCELLKNFAMMG--VGAGPGGQIFVTDMDL 501 (986)
Q Consensus 465 VlvvGa-GgiG~e~lknLa~~G--v~~g~~g~i~ivD~D~ 501 (986)
|.|||+ |.+|+.++..|++.| .. .+|+++|.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~----~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLA----IELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcc----eEEEEEeCCc
Confidence 579999 999999999999998 42 5899998544
No 442
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.12 E-value=4.6 Score=47.35 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+..++|+|+|+|.+|.-+|+.+...|. +++++|.+.. +.+........+...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~-------------------------r~~~A~~~G~~v~~l-- 244 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPI-------------------------RALEAAMDGFRVMTM-- 244 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChh-------------------------hHHHHHhcCCEeCCH--
Q ss_pred CCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
++.++..|+||.++.+......-.-..-+.+.-++.++..+
T Consensus 245 ---eeal~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 245 ---EEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred ---HHHHhcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
No 443
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.10 E-value=1.2 Score=50.89 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=32.4
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.|.+++|.|||+|.+|..+++.|...|. +++.+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~------~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA------TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 4788899999999999999999998887 89998854
No 444
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=84.06 E-value=2.5 Score=47.68 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=29.5
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++|+|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~------~V~~~~r~ 39 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW------HVIMACRN 39 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 35678999986 8999999999999987 88888754
No 445
>PRK15076 alpha-galactosidase; Provisional
Probab=84.05 E-value=4.3 Score=48.12 Aligned_cols=108 Identities=21% Similarity=0.172 Sum_probs=62.3
Q ss_pred CcEEEEecChhhHHHHH--HHH-HcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcH-HHH-HHHHHHhhCCCc
Q psy7300 463 LKYFVVGAGAIGCELLK--NFA-MMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPK-SAT-AAKAIKVMNPNV 537 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lk--nLa-~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K-a~~-a~~~l~~~np~~ 537 (986)
.||.|||+|++|...+- .++ ..++. ...|+++|-|. .| .+ +.. +.+.+....+.+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~---~~evvLvDid~------er-----------~~~~~~l~~~~~~~~~~~~ 61 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALR---DAEIALMDIDP------ER-----------LEESEIVARKLAESLGASA 61 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCC---CCEEEEECCCH------HH-----------HHHHHHHHHHHHHhcCCCe
Confidence 47999999998855444 665 33331 13899999654 11 01 111 334444455556
Q ss_pred eEEEEEcccCCccccccccccccCCCEEEEcCCC--HHHHHHHH-HHHHHcCCcEEEEeecCCcce
Q psy7300 538 NITYHENRVGPETEKVYDDLFFESLDGIANALDN--VEARIYMD-RRCVYSRKPLLESGTLGTKGN 600 (986)
Q Consensus 538 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn--~~ar~~l~-~~c~~~~~pli~~g~~G~~G~ 600 (986)
+|+..... .+.+.++|+|+.+.-- .++++..+ +...++|+--=-.-+.|..|-
T Consensus 62 ~i~~ttD~----------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~ 117 (431)
T PRK15076 62 KITATTDR----------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGI 117 (431)
T ss_pred EEEEECCH----------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccch
Confidence 66543221 2456899999998765 34454455 777788875211145565553
No 446
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.02 E-value=4.4 Score=40.43 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=41.7
Q ss_pred CcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 76 SDVLISG-LGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 76 s~VlIiG-~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+.|+|.| .+|+|.++++.|+..|-..+.++... .-..+++.+...+.+.+ .++.....
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~ 59 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIEC 59 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--cccccccc
Confidence 3688998 88999999999999999999998865 01235555666666544 45555443
No 447
>PRK08374 homoserine dehydrogenase; Provisional
Probab=83.96 E-value=3.1 Score=47.62 Aligned_cols=108 Identities=16% Similarity=0.213 Sum_probs=57.8
Q ss_pred CcEEEEecChhhHHHHHHHHH--------cCCCcCCCCeEEEE---eCCccccccCccccCcCCCCCCCcHHHHHHHHHH
Q psy7300 463 LKYFVVGAGAIGCELLKNFAM--------MGVGAGPGGQIFVT---DMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIK 531 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~--------~Gv~~g~~g~i~iv---D~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~ 531 (986)
.+|.|+|+|.+|+.+++.|.. +|+ ++.|+ |.+ -.+|.++.+.-.+ +.+..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~------~l~VvaV~ds~---------~~~~~~~Gid~~~---l~~~~~ 64 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV------ELKVVSITDTS---------GTIWLPEDIDLRE---AKEVKE 64 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC------CEEEEEEEeCC---------ccccCCCCCChHH---HHHhhh
Confidence 589999999999999999876 675 33333 422 1223333333222 222222
Q ss_pred hhCCCceEEEEEcccCCccccccccccc--cCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEee
Q psy7300 532 VMNPNVNITYHENRVGPETEKVYDDLFF--ESLDGIANALDNVEARIYMDRRCVYSRKPLLESGT 594 (986)
Q Consensus 532 ~~np~~~i~~~~~~v~~~~~~~~~~~f~--~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~ 594 (986)
+... +..+.......... .++++ ...|+||+++....++. +-..|...++++|.+-.
T Consensus 65 ~~~~---~~~~~~~~~~~~~~--~~ell~~~~~DVvVd~t~~~~a~~-~~~~al~~G~~VVtanK 123 (336)
T PRK08374 65 NFGK---LSNWGNDYEVYNFS--PEEIVEEIDADIVVDVTNDKNAHE-WHLEALKEGKSVVTSNK 123 (336)
T ss_pred ccCc---hhhccccccccCCC--HHHHHhcCCCCEEEECCCcHHHHH-HHHHHHhhCCcEEECCH
Confidence 2211 11111000000000 12344 46899999996655544 44567788999987753
No 448
>PRK07814 short chain dehydrogenase; Provisional
Probab=83.96 E-value=2.5 Score=46.07 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=30.2
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++|+|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~------~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA------DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999997 5799999999999987 88888754
No 449
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.94 E-value=2 Score=47.93 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=32.0
Q ss_pred HhhcCcEEEEcCCh-hHHHHHHHHHHhCCCeEEEEeC
Q psy7300 72 RMASSDVLISGLGG-LGVEIAKNVILSGVKSVTLHDT 107 (986)
Q Consensus 72 kL~~s~VlIiG~gg-lGseiaknLvl~GVg~itlvD~ 107 (986)
.++.++|+|+|.|+ +|..++..|...|. .+|+++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46788999999999 99999999999999 9999974
No 450
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.93 E-value=3.3 Score=50.82 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.5
Q ss_pred cCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 462 ~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
+-+|+|+|+|.+|.++++.|...|. .++++|.|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~------~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI------PLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC------CEEEEECCH
Confidence 5789999999999999999999998 899999875
No 451
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=83.92 E-value=2.9 Score=46.03 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=47.2
Q ss_pred EEEEcC-ChhHHHHHHHHHHhC--C-CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcC---CCCEEEee
Q psy7300 78 VLISGL-GGLGVEIAKNVILSG--V-KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLN---PYVSTKAY 150 (986)
Q Consensus 78 VlIiG~-gglGseiaknLvl~G--V-g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lN---p~V~v~~~ 150 (986)
|.|||+ |.+|..+|..|+..| . .+++|+|.+. .|++.....|++.. +..+|+..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~~ 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSIT 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEEC
Confidence 579999 999999999999998 4 6899999643 11222222233322 34455542
Q ss_pred cCCCCHhhhccccEEEEecC
Q psy7300 151 TGELSEAFIKKFRVVVLTNS 170 (986)
Q Consensus 151 ~~~~~~~~l~~~dvVI~~~~ 170 (986)
+ ++ .+-+++.|+||.+..
T Consensus 62 ~-d~-~~~~~~aDiVv~t~~ 79 (263)
T cd00650 62 D-DP-YEAFKDADVVIITAG 79 (263)
T ss_pred C-ch-HHHhCCCCEEEECCC
Confidence 2 21 456789999999663
No 452
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=83.88 E-value=5.3 Score=46.68 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=28.6
Q ss_pred hcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 461 GKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 461 ~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
...+|+|+|+ |.||..+++.|+..|. ++++++.+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~------~V~~l~R~ 93 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY------NVVAVARE 93 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEEec
Confidence 4468999997 8899999999999887 78887644
No 453
>KOG1205|consensus
Probab=83.81 E-value=4 Score=45.40 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=58.3
Q ss_pred CHHHHHHHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHH
Q psy7300 453 GKNFQEKLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIK 531 (986)
Q Consensus 453 G~~~q~~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~ 531 (986)
+....+++.++-|+|-|| .|||-++|+.|+..|. ++.++-.- ..+-+.+++.++
T Consensus 3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~------~l~lvar~-------------------~rrl~~v~~~l~ 57 (282)
T KOG1205|consen 3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGA------KLVLVARR-------------------ARRLERVAEELR 57 (282)
T ss_pred ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCC------ceEEeehh-------------------hhhHHHHHHHHH
Confidence 445678999999999998 7899999999999998 55555311 123344545555
Q ss_pred hhCCCceEEEEEcccCCcccc--ccc--cccccCCCEEEEc
Q psy7300 532 VMNPNVNITYHENRVGPETEK--VYD--DLFFESLDGIANA 568 (986)
Q Consensus 532 ~~np~~~i~~~~~~v~~~~~~--~~~--~~f~~~~DvVi~a 568 (986)
+..|.-++..+..++.+..+. .|+ ..-|.+.|+.||.
T Consensus 58 ~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNN 98 (282)
T KOG1205|consen 58 KLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNN 98 (282)
T ss_pred HhCCcCccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 444433677777777643321 110 1335677777764
No 454
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=83.77 E-value=3.1 Score=47.70 Aligned_cols=38 Identities=11% Similarity=-0.078 Sum_probs=29.9
Q ss_pred ccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeec
Q psy7300 557 LFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTL 595 (986)
Q Consensus 557 ~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~ 595 (986)
+.+.++|+|++|+....++... ..|.++|+++|+.|..
T Consensus 74 el~~~vDVVIdaT~~~~~~e~a-~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 74 DLLEKADIVVDATPGGVGAKNK-ELYEKAGVKAIFQGGE 111 (341)
T ss_pred HhhccCCEEEECCCchhhHHHH-HHHHHCCCEEEEcCCC
Confidence 4457899999999887665554 5788899999998864
No 455
>PRK13529 malate dehydrogenase; Provisional
Probab=83.70 E-value=0.76 Score=55.21 Aligned_cols=134 Identities=14% Similarity=0.249 Sum_probs=76.1
Q ss_pred CccchhhhccCHHHH------------------HHHhcCcEEEEecChhhHHHHHHHHH----cCCCcC-CCCeEEEEeC
Q psy7300 443 SRYEGQVAIFGKNFQ------------------EKLGKLKYFVVGAGAIGCELLKNFAM----MGVGAG-PGGQIFVTDM 499 (986)
Q Consensus 443 ~rydrqi~~~G~~~q------------------~~L~~~~VlvvGaGgiG~e~lknLa~----~Gv~~g-~~g~i~ivD~ 499 (986)
+||...+.+|-.+.| ++|.+.||+++|||+.|.-+++.|+. .|+.-. ...+|.++|.
T Consensus 258 ~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~ 337 (563)
T PRK13529 258 ERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDR 337 (563)
T ss_pred HHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcC
Confidence 566666666655444 67889999999999999999999987 577210 1258999997
Q ss_pred CccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCC--CEEEEcCC--CHHHH
Q psy7300 500 DLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESL--DGIANALD--NVEAR 575 (986)
Q Consensus 500 D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~--DvVi~a~D--n~~ar 575 (986)
+-+-... | .|+...|..-|++ .++.... ... .. .... .+.++.. |++|.+.. +.=+.
T Consensus 338 ~GLl~~~--r------~~l~~~k~~fa~~----~~~~~~~---~~~-~~-~~~L--~e~v~~~kPtvLIG~S~~~g~Ft~ 398 (563)
T PRK13529 338 QGLLTDD--M------PDLLDFQKPYARK----REELADW---DTE-GD-VISL--LEVVRNVKPTVLIGVSGQPGAFTE 398 (563)
T ss_pred CCeEeCC--C------CcchHHHHHHhhh----ccccccc---ccc-cC-CCCH--HHHHhccCCCEEEEecCCCCCCCH
Confidence 7432221 1 1233344443332 1111000 000 00 0001 2344555 77776543 33345
Q ss_pred HHHHHHHHHcCCcEEEEeec
Q psy7300 576 IYMDRRCVYSRKPLLESGTL 595 (986)
Q Consensus 576 ~~l~~~c~~~~~pli~~g~~ 595 (986)
..|..++.....|+|.+-+.
T Consensus 399 evv~~Ma~~~erPIIFaLSN 418 (563)
T PRK13529 399 EIVKEMAAHCERPIIFPLSN 418 (563)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 67777777777888776543
No 456
>PRK14982 acyl-ACP reductase; Provisional
Probab=83.67 E-value=1.1 Score=51.31 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=31.6
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHH-cCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAM-MGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~-~Gv~~g~~g~i~ivD~D 500 (986)
.|.+++|+|+|+ |.+|+++++.|+. .|+ .++++++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv-----~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV-----AELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC-----CEEEEEcCC
Confidence 588899999999 8999999999985 477 689988644
No 457
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=83.65 E-value=5.5 Score=48.15 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCC
Q psy7300 76 SDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTA 109 (986)
Q Consensus 76 s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~ 109 (986)
.+|.|||+|.+|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 379999999999999999999998 799999743
No 458
>PRK07102 short chain dehydrogenase; Provisional
Probab=83.63 E-value=4 Score=43.69 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=27.8
Q ss_pred CcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 463 LKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 463 ~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
++|+|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~------~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA------RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC------EEEEEeCC
Confidence 57899985 9999999999999987 88888754
No 459
>PRK07063 short chain dehydrogenase; Provisional
Probab=83.60 E-value=4 Score=44.23 Aligned_cols=35 Identities=34% Similarity=0.583 Sum_probs=30.0
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q psy7300 72 RMASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDT 107 (986)
Q Consensus 72 kL~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~ 107 (986)
+|.+++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 47788999999 57999999999999997 5777774
No 460
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=83.57 E-value=2.1 Score=46.31 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=31.6
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
+.+++|+|.|+ |+||.++++.|+..|. ++.++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~------~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA------RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEcCCH
Confidence 56788999996 9999999999999998 889988664
No 461
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=83.51 E-value=6.5 Score=45.17 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=58.2
Q ss_pred cCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 462 KLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 462 ~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
..||+|+|+ |.+|.|+++.|...+. +...+..+. ..+..|+.=.. ....+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~h---P~~~l~~la---------------s~rsaGk~~~~----------~~~~~~ 58 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDF---PYSSLKMLA---------------SARSAGKKVTF----------EGRDYT 58 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCC---CcceEEEEE---------------ccCCCCCeeee----------cCceeE
Confidence 468999997 7799999999997665 223554442 22233432211 111111
Q ss_pred EEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESG 593 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g 593 (986)
...+ +.+-+.++|+|+.|+.+-.++.++.++ .+.|+.+||.+
T Consensus 59 --v~~~--------~~~~~~~~D~vf~a~p~~~s~~~~~~~-~~~g~~VIDlS 100 (344)
T PLN02383 59 --VEEL--------TEDSFDGVDIALFSAGGSISKKFGPIA-VDKGAVVVDNS 100 (344)
T ss_pred --EEeC--------CHHHHcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECC
Confidence 1111 112347899999999998888888765 45688888876
No 462
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=83.50 E-value=3.2 Score=44.87 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=28.1
Q ss_pred cCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 462 KLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 462 ~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+++|+|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~------~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY------RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 457999987 7899999999999887 88888744
No 463
>PRK06181 short chain dehydrogenase; Provisional
Probab=83.50 E-value=3.9 Score=44.33 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=27.5
Q ss_pred CcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 463 LKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 463 ~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
++|+|.|+ |++|.++++.|+..|. +++++|.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~------~Vi~~~r~ 34 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA------QLVLAARN 34 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 57899997 8999999999998886 88888743
No 464
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.48 E-value=2.9 Score=41.78 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=26.8
Q ss_pred CcEEEEe-cChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 463 LKYFVVG-AGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 463 ~~VlvvG-aGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.|+|.| .||||-++++.|+..|- ..+.+++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-----~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-----RVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-----EEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-----eEEEEeeec
Confidence 3588888 58999999999999976 577777644
No 465
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.48 E-value=3.9 Score=48.54 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=31.7
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCc
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~ 501 (986)
+.+++|+|+|+|+.|..+++.|+..|. .+++.|.+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~------~v~~~d~~~ 38 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA------EVAAYDAEL 38 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCC
Confidence 457899999999999999999999998 889988543
No 466
>PRK12827 short chain dehydrogenase; Provisional
Probab=83.43 E-value=2.7 Score=44.91 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=28.9
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
|.+++++|.|+ |+||.++++.|+..|. ++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~------~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA------DVIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEc
Confidence 45788999995 8999999999999987 788877
No 467
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=83.42 E-value=5.6 Score=44.17 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=62.2
Q ss_pred cEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEEE
Q psy7300 464 KYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYH 542 (986)
Q Consensus 464 ~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~~ 542 (986)
+|+|.|+ |-+|.++.+.|. .+ +.++-+|...++..| .+.+++.+++..|++-|.+-
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~------~~v~a~~~~~~Ditd----------------~~~v~~~i~~~~PDvVIn~A 58 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GE------FEVIATDRAELDITD----------------PDAVLEVIRETRPDVVINAA 58 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CC------ceEEeccCccccccC----------------hHHHHHHHHhhCCCEEEECc
Confidence 5999998 559999999997 33 366666655544433 34577888899999877643
Q ss_pred Ec-ccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEeec
Q psy7300 543 EN-RVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTL 595 (986)
Q Consensus 543 ~~-~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g~~ 595 (986)
.- .++. .|..- +.- .-| |..+-..+.+.|.+.|.++|.-.|.
T Consensus 59 Ayt~vD~-aE~~~-e~A-----~~v----Na~~~~~lA~aa~~~ga~lVhiSTD 101 (281)
T COG1091 59 AYTAVDK-AESEP-ELA-----FAV----NATGAENLARAAAEVGARLVHISTD 101 (281)
T ss_pred ccccccc-ccCCH-HHH-----HHh----HHHHHHHHHHHHHHhCCeEEEeecc
Confidence 22 2221 11100 000 112 3345567889999999999998865
No 468
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=83.40 E-value=3.5 Score=46.20 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=64.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCCC-C
Q psy7300 77 DVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL-S 155 (986)
Q Consensus 77 ~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~~-~ 155 (986)
+|.+||+|-+|..++.+|+..|. .++++|.+.- ... +. +.|-..+....+-++ ..++-+....... .
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~~-----~~---~~g~~~~~s~~~~~~--~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-ADE-----LL---SLGAVSVETARQVTE--ASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HHH-----HH---HcCCeecCCHHHHHh--cCCEEEEeCCChHHH
Confidence 69999999999999999999996 7888886431 111 11 112222211111111 2344444433221 0
Q ss_pred Hhh-------h---ccccEEEEec-CCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 156 EAF-------I---KKFRVVVLTN-STYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 156 ~~~-------l---~~~dvVI~~~-~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
.+. + ..-.+||++. .++....++.+.+.++++.|+.+-+.|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG 121 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG 121 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 111 1 2235677655 566677788888999998888887666
No 469
>PRK09242 tropinone reductase; Provisional
Probab=83.40 E-value=5.3 Score=43.19 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=45.0
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 72 RMASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 72 kL~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
+|++++++|.| .||+|.++++.|+..|. ++++++.+. .+.+...+.+...+|..++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDA-------------------DALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeEEEE
Confidence 46678999999 57999999999999997 688877421 2344556666666666666555
Q ss_pred cCCC
Q psy7300 151 TGEL 154 (986)
Q Consensus 151 ~~~~ 154 (986)
..++
T Consensus 66 ~~Dl 69 (257)
T PRK09242 66 AADV 69 (257)
T ss_pred ECCC
Confidence 4444
No 470
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=83.33 E-value=0.85 Score=55.01 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=67.9
Q ss_pred HHHhcCcEEEEecChhhHHHHHHHHHcCCC-cCC-----CCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHH
Q psy7300 458 EKLGKLKYFVVGAGAIGCELLKNFAMMGVG-AGP-----GGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIK 531 (986)
Q Consensus 458 ~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~-~g~-----~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~ 531 (986)
++|.+.||+++|||+.|.-+++.|+..++. .|. ..+|.++|.+-+-... | .+++...|...|+.
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 678999999999999999999999885332 122 2589999977433221 1 11134445444443
Q ss_pred hhCCCceEEEEEcccCCccccccccccccC--CCEEEEcCC--CHHHHHHHHHHHHHcCCcEEEEee
Q psy7300 532 VMNPNVNITYHENRVGPETEKVYDDLFFES--LDGIANALD--NVEARIYMDRRCVYSRKPLLESGT 594 (986)
Q Consensus 532 ~~np~~~i~~~~~~v~~~~~~~~~~~f~~~--~DvVi~a~D--n~~ar~~l~~~c~~~~~pli~~g~ 594 (986)
.+. ... . .+.++. .|++|.+.. +.=+...|..++.....|+|.+-+
T Consensus 387 --~~~---------~~~----L--~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS 436 (581)
T PLN03129 387 --HEP---------GAS----L--LEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS 436 (581)
T ss_pred --ccc---------CCC----H--HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 111 010 0 234455 677776542 344456788888778888887754
No 471
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=83.31 E-value=3.7 Score=44.11 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=29.1
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
+++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~------~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA------KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEeC
Confidence 45678999995 9999999999999887 7888764
No 472
>PLN02650 dihydroflavonol-4-reductase
Probab=83.31 E-value=7.5 Score=44.37 Aligned_cols=34 Identities=32% Similarity=0.302 Sum_probs=28.5
Q ss_pred hcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 461 GKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 461 ~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.+++|+|.|+ |.||+.+++.|+..|. ++++++.+
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~------~V~~~~r~ 38 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY------TVRATVRD 38 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC------EEEEEEcC
Confidence 3568999996 8899999999999987 78877654
No 473
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=83.26 E-value=1.9 Score=52.40 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=30.5
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
+.+++|+|+|+||+|..++..|+..|+ ++++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~------~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA------RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC------EEEEEcC
Confidence 567899999999999999999999997 8888864
No 474
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.25 E-value=2.9 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.5
Q ss_pred cEEEEecChhhHHHHHHHHHcCC
Q psy7300 464 KYFVVGAGAIGCELLKNFAMMGV 486 (986)
Q Consensus 464 ~VlvvGaGgiG~e~lknLa~~Gv 486 (986)
+|.+||+|.+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999998875
No 475
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.25 E-value=1.7 Score=44.84 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCC
Q psy7300 68 DAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTA 109 (986)
Q Consensus 68 ~~q~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~ 109 (986)
.....|.+++|.|+|+|.+|.++|+-|.-.|. ++..+|...
T Consensus 29 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~ 69 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP 69 (178)
T ss_dssp TTBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred CCccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence 33457899999999999999999999999999 899999754
No 476
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=83.22 E-value=2 Score=48.99 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=74.5
Q ss_pred CcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEe-CCccccccCccccCcCCCCC-CCcHHHHHH-HHHHhhCCCceE
Q psy7300 463 LKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTD-MDLIEKSNLNRQFLFRPHDV-QQPKSATAA-KAIKVMNPNVNI 539 (986)
Q Consensus 463 ~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD-~D~Ie~sNLnRqflf~~~di-G~~Ka~~a~-~~l~~~np~~~i 539 (986)
.||.|+|+|.||..+++.|...++. .++.|+- +|..+...+- +||.-+.. |+.+.++-. ..-..++ +-+|
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~----~~l~vvaind~~~~~~~a--yll~ydS~hg~~~~~v~~~~~~l~v~-g~~i 74 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRR----AEITVVAINELADAEGMA--HLLKYDTSHGRFAWDVRQERDQLFVG-DDAI 74 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCC----CceEEEEecCCCCHHHHH--HHhhhccCCCCCCCcEEecCCEEEEC-CEEE
Confidence 3799999999999999999876652 4566661 2333333332 23332222 444322200 0000011 1122
Q ss_pred EEEEcccCCccccccccccc--cCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEe-ecCCcceEEEEeCCCC-ccccCC
Q psy7300 540 TYHENRVGPETEKVYDDLFF--ESLDGIANALDNVEARIYMDRRCVYSRKPLLESG-TLGTKGNSQVVVPHLT-ESYSSS 615 (986)
Q Consensus 540 ~~~~~~v~~~~~~~~~~~f~--~~~DvVi~a~Dn~~ar~~l~~~c~~~~~pli~~g-~~G~~G~v~~~~p~~t-~cy~c~ 615 (986)
.....+ ++ .+.-| .++|+|+.|+.....|.+.... ...|...|... .......+ .++|+.. +.|.-
T Consensus 75 ~v~~~~-~p------~~~~w~~~gvDiVle~tG~~~s~~~a~~~-l~aGAk~V~iSap~~~d~~~-~vV~gVN~~~~~~- 144 (336)
T PRK13535 75 RLLHER-DI------ASLPWRELGVDVVLDCTGVYGSREDGEAH-IAAGAKKVLFSHPGSNDLDA-TVVYGVNHDQLRA- 144 (336)
T ss_pred EEEEcC-Cc------ccCcccccCCCEEEEccchhhhHHHHHHH-HHcCCEEEEecCCcccCCCC-eEEeCcCHHHhCc-
Confidence 222221 01 11235 6999999999988777665544 34565544443 32222234 5777764 34421
Q ss_pred CCCCCCCCCccc
Q psy7300 616 QDPPEKSIPICT 627 (986)
Q Consensus 616 ~~~~~~~~p~Ct 627 (986)
...--+.|.||
T Consensus 145 -~~~IISnasCT 155 (336)
T PRK13535 145 -EHRIVSNASCT 155 (336)
T ss_pred -CCCEEECCchH
Confidence 11124566775
No 477
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=83.22 E-value=2.1 Score=48.43 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=0.0
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCC-CeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEe-ecCC
Q psy7300 77 DVLISGL-GGLGVEIAKNVILSGV-KSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKA-YTGE 153 (986)
Q Consensus 77 ~VlIiG~-gglGseiaknLvl~GV-g~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~-~~~~ 153 (986)
||.|+|+ |.+|+.+|-.|+..|+ .++.|+| +-. ++..+.-|+...+.++|.. ...+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~D-------------------i~~--a~g~a~DL~~~~~~~~i~~~~~~~ 59 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYD-------------------IAG--AAGVAADLSHIPTAASVKGFSGEE 59 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEec-------------------CCC--CcEEEchhhcCCcCceEEEecCCC
Q ss_pred CCHhhhccccEEEEe
Q psy7300 154 LSEAFIKKFRVVVLT 168 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~ 168 (986)
-..+-+++.|+||.|
T Consensus 60 ~~~~~~~daDivvit 74 (312)
T TIGR01772 60 GLENALKGADVVVIP 74 (312)
T ss_pred chHHHcCCCCEEEEe
No 478
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=83.20 E-value=0.88 Score=54.67 Aligned_cols=89 Identities=20% Similarity=0.295 Sum_probs=57.1
Q ss_pred HHHHHhhhCCCccccccccccchhhhcccccccccccccCccchhhhccCHHHH------------------HHHhcCcE
Q psy7300 404 QEVMKACSGKFHPIFQWLYFDAVECIDENIAETDAIVNGSRYEGQVAIFGKNFQ------------------EKLGKLKY 465 (986)
Q Consensus 404 QEvIKaiT~kf~Pi~q~~~fD~~e~l~~~~~~~~~~~~~~rydrqi~~~G~~~q------------------~~L~~~~V 465 (986)
+|.++++..+| |-- .+.|.-+ ....+...-+||...+.+|-.+.| ++|.+.||
T Consensus 230 defv~av~~~~-P~~-~Iq~EDf-------~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~ri 300 (559)
T PTZ00317 230 DEFMEAVSSRW-PNA-VVQFEDF-------SNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRI 300 (559)
T ss_pred HHHHHHHHHhC-CCe-EEehhhc-------CCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 45566677777 542 2222211 111222233567666777755544 67899999
Q ss_pred EEEecChhhHHHHHHHHH----cCCCcC-CCCeEEEEeCCc
Q psy7300 466 FVVGAGAIGCELLKNFAM----MGVGAG-PGGQIFVTDMDL 501 (986)
Q Consensus 466 lvvGaGgiG~e~lknLa~----~Gv~~g-~~g~i~ivD~D~ 501 (986)
+++|||+.|.-+++.|+. .|+.-. ...+|.++|.+-
T Consensus 301 v~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G 341 (559)
T PTZ00317 301 VFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG 341 (559)
T ss_pred EEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 999999999999999884 687211 125899999764
No 479
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=83.18 E-value=6.1 Score=43.81 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=27.3
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHh--CCCeEEEEeCC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILS--GVKSVTLHDTT 108 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~--GVg~itlvD~d 108 (986)
|...||.|||+|.+|..++++|... |+.=..++|.+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 4457899999999999999999863 55333466654
No 480
>PRK13243 glyoxylate reductase; Reviewed
Probab=83.16 E-value=1.3 Score=50.75 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=31.7
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.|.+++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~ 181 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM------RILYYSR 181 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5789999999999999999999998887 7888875
No 481
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.15 E-value=3.9 Score=45.40 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=55.2
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEE
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNIT 540 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~ 540 (986)
...+|.+||+|.+|..+++.|...|+- ....++++|... ..+++ .+.... .+++
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~--~~~~v~v~~r~~------------------~~~~~----~l~~~~-g~~~- 55 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVV--KGEQITVSNRSN------------------ETRLQ----ELHQKY-GVKG- 55 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCC--CcceEEEECCCC------------------HHHHH----HHHHhc-CceE-
Confidence 346899999999999999999988731 112455543210 01111 111111 1222
Q ss_pred EEEcccCCccccccccccccCCCEEEEcCCCHHHHHHHHHHHHH--cCCcEEE
Q psy7300 541 YHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVY--SRKPLLE 591 (986)
Q Consensus 541 ~~~~~v~~~~~~~~~~~f~~~~DvVi~a~Dn~~ar~~l~~~c~~--~~~pli~ 591 (986)
.. +. .+..+.+|+||.|+-....+..+..+... .+..+|+
T Consensus 56 -~~-----~~-----~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 56 -TH-----NK-----KELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred -eC-----CH-----HHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 11 11 23457889999999988888877766532 2444555
No 482
>PRK05872 short chain dehydrogenase; Provisional
Probab=83.14 E-value=4 Score=45.51 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=30.9
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r~ 42 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA------KLALVDLE 42 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 357789999996 8999999999999997 88888754
No 483
>PLN02494 adenosylhomocysteinase
Probab=83.12 E-value=3.9 Score=48.58 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 73 MASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 73 L~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+..++|+|+|+|.+|..+|+.+...|. +++++|.+.. +.+........+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~-------------------------r~~eA~~~G~~vv---- 301 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI-------------------------CALQALMEGYQVL---- 301 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch-------------------------hhHHHHhcCCeec----
Q ss_pred CCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEEeeccc
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRG 196 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~~~~~G 196 (986)
.-++.+...|+||.|+.+......-.--+-+.+--++.++..|
T Consensus 302 -~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 302 -TLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred -cHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCC
No 484
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=83.11 E-value=8 Score=41.90 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.5
Q ss_pred HHHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 458 EKLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 458 ~~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
+....++|+|+|+ |++|..+++.|+..|. +++.+.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~------~V~~~~ 48 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGF------AVKAGV 48 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCC------EEEEEe
Confidence 3456789999996 8999999999998886 666553
No 485
>PRK05876 short chain dehydrogenase; Provisional
Probab=83.10 E-value=2.8 Score=46.21 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.9
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+.+++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~------~Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA------RVVLGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999984 8999999999999998 78888744
No 486
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=83.09 E-value=4.2 Score=48.55 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred hcCcEEEEcCChhHHH-HHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecC
Q psy7300 74 ASSDVLISGLGGLGVE-IAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG 152 (986)
Q Consensus 74 ~~s~VlIiG~gglGse-iaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~ 152 (986)
+..+|+|+|+|+.|.. +|+.|...|. ++++.|.... ...+.|++. .+.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~----------------------~~~~~l~~~--gi~~~~--- 57 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKES----------------------AVTQRLLEL--GAIIFI--- 57 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCC----------------------hHHHHHHHC--CCEEeC---
Q ss_pred CCCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEE
Q psy7300 153 ELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALII 191 (986)
Q Consensus 153 ~~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~ 191 (986)
...++.+.++|+||.+. ..+.....-..++++++|++.
T Consensus 58 ~~~~~~~~~~d~vv~sp-gi~~~~~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 58 GHDAENIKDADVVVYSS-AIPDDNPELVAARELGIPVVR 95 (461)
T ss_pred CCCHHHCCCCCEEEECC-CCCCCCHHHHHHHHCCCcEEe
No 487
>CHL00194 ycf39 Ycf39; Provisional
Probab=83.03 E-value=5.3 Score=45.03 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=57.6
Q ss_pred CcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhhCCCceEEE
Q psy7300 463 LKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITY 541 (986)
Q Consensus 463 ~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~np~~~i~~ 541 (986)
++|+|.|+ |-+|+.+++.|...|. +++.++.+. .++ ..+.. + .++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~------~V~~l~R~~-------------------~~~----~~l~~--~--~v~~ 47 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY------QVRCLVRNL-------------------RKA----SFLKE--W--GAEL 47 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC------eEEEEEcCh-------------------HHh----hhHhh--c--CCEE
Confidence 37999996 8899999999999887 788776431 011 01111 1 2344
Q ss_pred EEcccCCccccccccccccCCCEEEEcCC------------CHHHHHHHHHHHHHcCC-cEEEEeec
Q psy7300 542 HENRVGPETEKVYDDLFFESLDGIANALD------------NVEARIYMDRRCVYSRK-PLLESGTL 595 (986)
Q Consensus 542 ~~~~v~~~~~~~~~~~f~~~~DvVi~a~D------------n~~ar~~l~~~c~~~~~-pli~~g~~ 595 (986)
+..++..... . ...++++|+|+++.. |..+-..+-+.|...++ -+|..++.
T Consensus 48 v~~Dl~d~~~-l--~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 48 VYGDLSLPET-L--PPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred EECCCCCHHH-H--HHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 4444432211 1 355678888888643 12222445577887776 36665543
No 488
>PRK10537 voltage-gated potassium channel; Provisional
Probab=82.94 E-value=3.1 Score=48.62 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=59.6
Q ss_pred HhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccc--cCcCC---------CCCCC--------
Q psy7300 460 LGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQ--FLFRP---------HDVQQ-------- 520 (986)
Q Consensus 460 L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRq--flf~~---------~diG~-------- 520 (986)
.++.+|+|+|.|.+|.++++.|...|. .++++|.|.++.. ..+. +.+.+ ..+.+
T Consensus 238 ~~k~HvII~G~g~lg~~v~~~L~~~g~------~vvVId~d~~~~~-~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 238 HRKDHFIICGHSPLAINTYLGLRQRGQ------AVTVIVPLGLEHR-LPDDADLIPGDSSDSAVLKKAGAARARAILALR 310 (393)
T ss_pred ccCCeEEEECCChHHHHHHHHHHHCCC------CEEEEECchhhhh-ccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcC
Confidence 346789999999999999999998887 8999998855422 2111 11111 11111
Q ss_pred ---cHHHHHHHHHHhhCCCceEEEEEcccCCccccccccccccCCCEEEEc
Q psy7300 521 ---PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANA 568 (986)
Q Consensus 521 ---~Ka~~a~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a 568 (986)
.....++..++++||++++.+...+-. +.+.+ --.+.|.|++.
T Consensus 311 ~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~--~~~~L---~~~GaD~VIsp 356 (393)
T PRK10537 311 DNDADNAFVVLAAKEMSSDVKTVAAVNDSK--NLEKI---KRVHPDMIFSP 356 (393)
T ss_pred CChHHHHHHHHHHHHhCCCCcEEEEECCHH--HHHHH---HhcCCCEEECH
Confidence 112334556788999988877655422 11111 12467888776
No 489
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=82.92 E-value=1.3 Score=50.45 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=32.0
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEe
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTD 498 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD 498 (986)
.|.+++|+|||+|-+|..++++|...|+ ++|+|+.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~-----~~i~v~n 205 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGY-----SRITFCS 205 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCC-----CEEEEEc
Confidence 4789999999999999999999999999 6899863
No 490
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.89 E-value=3.5 Score=44.50 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=30.7
Q ss_pred HHhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 459 KLGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 459 ~L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.+++++|+|.|+ |+||..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEeCC
Confidence 356788999998 9999999999999987 78888754
No 491
>KOG0069|consensus
Probab=82.84 E-value=1.2 Score=50.37 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=58.7
Q ss_pred HHHHHHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCCccccccCccccCcCCCCCCCcHHHHHHHHHHhh
Q psy7300 454 KNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVM 533 (986)
Q Consensus 454 ~~~q~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~~a~~~l~~~ 533 (986)
...-..+.+++|.|+|+|.||.++|+.|--.| .... |....-..++.. .+.
T Consensus 154 ~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-------~~i~----------------y~~r~~~~~~~~------~~~ 204 (336)
T KOG0069|consen 154 WPLGYDLEGKTVGILGLGRIGKAIAKRLKPFG-------CVIL----------------YHSRTQLPPEEA------YEY 204 (336)
T ss_pred ccccccccCCEEEEecCcHHHHHHHHhhhhcc-------ceee----------------eecccCCchhhH------HHh
Confidence 34446789999999999999999999998633 2111 222111111111 111
Q ss_pred CCCceEEEEEcccCCccccccccccccCCCEEE-EcCCCHHHHHHHHHHHHHcCC---cEEEEe
Q psy7300 534 NPNVNITYHENRVGPETEKVYDDLFFESLDGIA-NALDNVEARIYMDRRCVYSRK---PLLESG 593 (986)
Q Consensus 534 np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi-~a~Dn~~ar~~l~~~c~~~~~---pli~~g 593 (986)
+.. .+ ++ ++++.+.|+|+ +|-.+.+++..+|+.....=+ -+|+.+
T Consensus 205 ~~~--------~~-----d~--~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~a 253 (336)
T KOG0069|consen 205 YAE--------FV-----DI--EELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA 253 (336)
T ss_pred ccc--------cc-----CH--HHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecc
Confidence 111 11 11 57889999765 678899999999876554333 355554
No 492
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=82.84 E-value=4.2 Score=50.89 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=31.2
Q ss_pred hcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 461 GKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 461 ~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
.+++|+|||+|..|-..|..|++.|. +++|+|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEecC
Confidence 56799999999999999999999998 89999864
No 493
>PLN02572 UDP-sulfoquinovose synthase
Probab=82.81 E-value=3.3 Score=49.27 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=30.4
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 72 RMASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 72 kL~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~d 108 (986)
++++.+|||.| .|.+|+++++.|+..|. +++++|..
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~~ 80 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDNL 80 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence 45567899999 68999999999999996 69998853
No 494
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.77 E-value=4.7 Score=48.57 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=58.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEeecCC
Q psy7300 74 ASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGE 153 (986)
Q Consensus 74 ~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~~~~ 153 (986)
.+++|+|+|+|..|..+++.|...|. ++++.|... .+. +.+++. .+.+ ....
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~~----~~l~~~--g~~~--~~~~ 62 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DAL----RPHAER--GVAT--VSTS 62 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHH----HHHHhC--CCEE--EcCc
Confidence 56799999999999999999999996 788888421 011 123332 2333 2222
Q ss_pred CCHhhhccccEEEEecCCHHHHHHHHHHHHHcCCcEEE
Q psy7300 154 LSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALII 191 (986)
Q Consensus 154 ~~~~~l~~~dvVI~~~~~~~~~~~i~~~c~~~~ip~I~ 191 (986)
...+.++++|+||.+..-.. ...+-..+++.+||++.
T Consensus 63 ~~~~~l~~~D~VV~SpGi~~-~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 63 DAVQQIADYALVVTSPGFRP-TAPVLAAAAAAGVPIWG 99 (488)
T ss_pred chHhHhhcCCEEEECCCCCC-CCHHHHHHHHCCCcEee
Confidence 23456778999998764221 22345677889999885
No 495
>PRK06720 hypothetical protein; Provisional
Probab=82.69 E-value=3.1 Score=42.67 Aligned_cols=35 Identities=31% Similarity=0.370 Sum_probs=30.2
Q ss_pred HhcCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 460 LGKLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 460 L~~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
|.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~------~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA------KVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 67788999997 5799999999999987 89988855
No 496
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.62 E-value=1.6 Score=51.38 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=31.9
Q ss_pred HHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCCeEEEEeC
Q psy7300 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDM 499 (986)
Q Consensus 459 ~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g~i~ivD~ 499 (986)
.|.+++|.|||.|.||..+++.+...|+ ++..+|.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm------~V~~~d~ 182 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM------RVYFYDI 182 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999998887 8888884
No 497
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=82.60 E-value=3.8 Score=44.19 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=33.9
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q psy7300 71 RRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108 (986)
Q Consensus 71 ~kL~~s~VlIiG~gglGseiaknLvl~GVg~itlvD~d 108 (986)
..|+..+|+|.|.|.||..+++.|...|.+=+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45789999999999999999999999998777788864
No 498
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=82.58 E-value=0.9 Score=49.52 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHhcCcEEEEecChhhHHHHHHHHHcCCCcCCCC----------eEEEEeCC
Q psy7300 458 EKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGG----------QIFVTDMD 500 (986)
Q Consensus 458 ~~L~~~~VlvvGaGgiG~e~lknLa~~Gv~~g~~g----------~i~ivD~D 500 (986)
++|.+.||+++|+|+.|.-+++.|...|+ . +|.++|..
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~-----~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXV-----KEGISKEEACKRIWXVDRK 68 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHH-----hcCCCHHHHhccEEEECCC
No 499
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=82.50 E-value=7.6 Score=43.45 Aligned_cols=33 Identities=30% Similarity=0.228 Sum_probs=28.1
Q ss_pred cCcEEEEec-ChhhHHHHHHHHHcCCCcCCCCeEEEEeCC
Q psy7300 462 KLKYFVVGA-GAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500 (986)
Q Consensus 462 ~~~VlvvGa-GgiG~e~lknLa~~Gv~~g~~g~i~ivD~D 500 (986)
+++|+|.|+ |.||+.+++.|+..|. ++++++.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~------~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY------TVKATVRD 37 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC------EEEEEEcC
Confidence 578999995 9999999999999887 78777654
No 500
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=82.49 E-value=8.9 Score=42.32 Aligned_cols=63 Identities=25% Similarity=0.390 Sum_probs=48.7
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCCCCccCCCcccccCcCccCchHHHHHHHHHhhcCCCCEEEee
Q psy7300 72 RMASSDVLISG-LGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150 (986)
Q Consensus 72 kL~~s~VlIiG-~gglGseiaknLvl~GVg~itlvD~d~V~~sdl~rqf~~~~~diGk~Ka~a~~~~L~~lNp~V~v~~~ 150 (986)
.+...+++|-| .+|+|-|+|+.|++-|. ++.|+-.+ +.|-+.+++.|+... .|+++++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~-------------------~~kL~~la~~l~~~~-~v~v~vi 61 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY-NLILVARR-------------------EDKLEALAKELEDKT-GVEVEVI 61 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-------------------HHHHHHHHHHHHHhh-CceEEEE
Confidence 35678999999 68999999999999997 56666532 347778888888777 7777777
Q ss_pred cCCCC
Q psy7300 151 TGELS 155 (986)
Q Consensus 151 ~~~~~ 155 (986)
.-+++
T Consensus 62 ~~DLs 66 (265)
T COG0300 62 PADLS 66 (265)
T ss_pred ECcCC
Confidence 66553
Done!