RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7300
(986 letters)
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model
represents the full length, over a thousand amino acids,
of a multicopy family of eukaryotic proteins, many of
which are designated ubiquitin-activating enzyme E1.
Members have two copies of the ThiF family domain
(pfam00899), a repeat found in ubiquitin-activating
proteins (pfam02134), and other regions.
Length = 1008
Score = 1089 bits (2818), Expect = 0.0
Identities = 459/958 (47%), Positives = 609/958 (63%), Gaps = 42/958 (4%)
Query: 52 DIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATS 111
+IDE LYSRQLYVLG +AM++MA S+VLISG+GGLG+EIAKN++L+GVKSVTLHDT
Sbjct: 1 EIDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQ 60
Query: 112 LSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTNST 171
DLSS F+LSE DVGRNRAE L++LNPYV + + +E F+ KF+ VVLT +
Sbjct: 61 AWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVPFNEEFLDKFQCVVLTEMS 120
Query: 172 YDEQLAISQITHAN--DIALIIADTRGLFAQVFCDFGNNFTVVDTTGENPVSVIIAGVTR 229
Q I+ H+ IA I AD RGLF +FCDFG+ F V+DT GE P + IA +T+
Sbjct: 121 LPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEFEVLDTDGEEPKTGFIASITQ 180
Query: 230 EAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQLNGIEPRKVKVLGPYTFSIGDTTKFDEY 289
G+VTCL+ RH E GD+VTF EV GMT LN PRK+ V+ PY+FSIGDTT+ Y
Sbjct: 181 ANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSIGDTTELGPY 240
Query: 290 VSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFAKFESPANLHVAFSTLHNFVKSFGYA 349
+ GGIATQVK PK + F L E L+ P+ ++ DF+K E P +H AF L F + +
Sbjct: 241 LHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALDQFQEKYSRK 300
Query: 350 PKPWNSADADQFLALAKESKLNNG------ELDEKLLQLFAKTAAGNCNPVNAVIGGIVA 403
P DA++ L LA ++ ++D KL+ + TA G +P+ A +GG+V+
Sbjct: 301 PNVGCQQDAEELLKLAT--SISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVS 358
Query: 404 QEVMKACSGKFHPIFQWLYFDAVECIDENIA--ETDAIVNGSRYEGQVAIFGKNFQEKLG 461
QEV+KA +GKF P+ QW YFD+ E + + + G RY+ Q+A+FG FQ+KL
Sbjct: 359 QEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQ 418
Query: 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQP 521
L F+VG GAIGCE+LKNFA+MGVG G G I VTD DLIEKSNLNRQFLFRPH + +P
Sbjct: 419 NLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKP 478
Query: 522 KSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRR 581
KS TAA A +NP + I H+NRVGPETE +++D F+E LD + NALDNVEAR Y+D R
Sbjct: 479 KSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSR 538
Query: 582 CVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQW 641
C+ KPLLESGTLGTKGN+QVVVPHLTESY SS+DPPEK IP CTLK+FP AIEHT+QW
Sbjct: 539 CLAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQW 598
Query: 642 ARDNFEGIFRQSAENAAEYLEDPN-FVERVMKLPGSQPLEMLENVKHALVDERPLNIKDC 700
ARD FEG+F +YL P+ E + K+ E LE + L E+P N C
Sbjct: 599 ARDKFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLLSKEKPRNFSQC 658
Query: 701 VAWARNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLHLQYIY 760
V WAR ++ +NN+ QLL FP + TS+G PFWS PKR P PL+FD+ +PLHL +I
Sbjct: 659 VEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQ 718
Query: 761 TGANLKAELYGIP---QVRNLDAIAQMVKQVVVPEFTPKSGVTIAVTD-AQLQNSNGDYD 816
A L A +YGIP + + DA+ ++ +V +PEF P+S I + A+ ++ + D
Sbjct: 719 AAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDD 778
Query: 817 QDRLGQLKNELPSIQELQG-LHITPLEFEKDDDTNLHMDFIVAASNLRAANYGITPADRH 875
++ + QL+ + S + + + PL FEKDDD N H+DFI AASNLRA NY I PADR
Sbjct: 779 RNAIFQLEKAILSNEATKSDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRF 838
Query: 876 TSKLIAGKIIPAIATTTSVVAGLVS---------KKKIEPHVRALVFELCCQDESGEDVE 926
+K IAGKIIPAIAT+T+ V+GLV K E + + L
Sbjct: 839 KTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVY-KNCFLNLA---------- 887
Query: 927 TTIVAVVAYCWSKGAPKLKYYDVEW-TLWDRFEINQEMTLKQFLDYFQNEHKLEITIL 983
+ + + K K + T+WDR+ ++ + TL +F++ + ++ LE T++
Sbjct: 888 ---IPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVKEKYGLEPTMV 942
Score = 36.8 bits (85), Expect = 0.061
Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 25/209 (11%)
Query: 744 KPLEFDVTDPL--HLQYIYTGANLKAELYGIPQVRNLDAIAQMVKQVVVPEF-TPKSGVT 800
PL F+ D H+ +I +NL+A+ Y I + + ++P T + V+
Sbjct: 802 APLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKT--KFIAGKIIPAIATSTATVS 859
Query: 801 IAVTDAQLQNSNGDYDQDRLGQLKNELPSIQELQGLHITPLEFEKD-----------DDT 849
V ++ ++G Y + KN ++ + P E K D
Sbjct: 860 GLVCLELIKVTDGGY---KFEVYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRW 916
Query: 850 NLHMDF-IVAASNLRAANYGITPAD-RHTSKLIAGKIIPAIAT----TTSVVAGLVSKKK 903
LH DF ++ N YG+ P KL+ ++P A + +KKK
Sbjct: 917 TLHGDFTLLEFINAVKEKYGLEPTMVSQGVKLLYVPVMPGHAERLKLKMHKLVKPTTKKK 976
Query: 904 IEPHVRALVFELCCQDESGEDVETTIVAV 932
+ P+ L C D+ EDV V +
Sbjct: 977 LPPYRVHLTVSFACDDDGDEDVPGPPVRI 1005
>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2.
E1, a highly conserved small protein present universally
in eukaryotic cells, is part of cascade to attach
ubiquitin (Ub) covalently to substrate proteins. This
cascade consists of activating (E1), conjugating (E2),
and/or ligating (E3) enzymes and then targets them for
degradation by the 26S proteasome. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and ubiquitin's C-terminus. E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. Ubiquitin-E1 is a
single-chain protein with a weakly conserved two-fold
repeat. This CD represents the second repeat of Ub-E1.
Length = 435
Score = 549 bits (1417), Expect = 0.0
Identities = 200/311 (64%), Positives = 234/311 (75%), Gaps = 35/311 (11%)
Query: 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKS 523
K F+VGAGAIGCELLKNFA+MGVG G G+I VTDMD IEKSNLNRQFLFRPHDV +PKS
Sbjct: 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKS 60
Query: 524 ATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCV 583
AA A+K MNP++ IT +NRVGPETE +++D F+E LDG+ANALDNV+AR+Y+DRRCV
Sbjct: 61 EVAAAAVKAMNPDLKITALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCV 120
Query: 584 YSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWAR 643
Y RKPLLESGTLGTKGN+QVV+PHLTESYSSS+DPPEKSIP+CTLKNFPNAIEHT+QWAR
Sbjct: 121 YYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSIPLCTLKNFPNAIEHTIQWAR 180
Query: 644 DNFEGIFRQSAENAAEYLEDPNFVERVMKLPGSQPLEMLENVKHALVDERPLNIKDCVAW 703
D FEG+F+Q EN +YL + DCV W
Sbjct: 181 DEFEGLFKQPPENVNQYLFE-----------------------------------DCVRW 205
Query: 704 ARNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLHLQYIYTGA 763
AR ++ +NN I+QLL NFPP+ VTS G PFWSGPKRCP PLEFDV +PLHL ++ A
Sbjct: 206 ARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAA 265
Query: 764 NLKAELYGIPQ 774
NL AE+YGIP
Sbjct: 266 NLYAEVYGIPG 276
Score = 158 bits (403), Expect = 8e-42
Identities = 75/152 (49%), Positives = 92/152 (60%), Gaps = 21/152 (13%)
Query: 842 EFEKDDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVSK 901
FEKDDDTN HMDFI AASNLRA NY I PADRH +K IAGKIIPAIATTT+ V GLV
Sbjct: 276 GFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVC- 334
Query: 902 KKIEPHVRALVFELCCQDESGEDVE-------TTIVAVVAYCWSKGAPKLKY-YDVEWTL 953
EL + +E + A+ APK+KY YD EWT+
Sbjct: 335 -----------LELYKVVDGKRPLEAYKNAFLNLALPFFAFSEPIPAPKVKYAYDEEWTI 383
Query: 954 WDRFEINQEMTLKQFL-DYFQNEHKLEITILL 984
WDRFE+ + TL++ L DYF+ ++ LE+T+L
Sbjct: 384 WDRFEVKGKQTLQELLIDYFKEKYGLEVTMLS 415
Score = 46.1 bits (110), Expect = 7e-05
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 78 VLISGLGGLGVEIAKNVILSGVKS-----VTLHDTTATSLSDLSSQFYLSEKDVGRNRAE 132
V + G G +G E+ KN L GV + +T+ D S+L+ QF DVG+ ++E
Sbjct: 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSE 61
Query: 133 VSHTNLSQLNPYVSTKAYT 151
V+ + +NP + A
Sbjct: 62 VAAAAVKAMNPDLKITALQ 80
>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1.
E1, a highly conserved small protein present universally
in eukaryotic cells, is part of cascade to attach
ubiquitin (Ub) covalently to substrate proteins. This
cascade consists of activating (E1), conjugating (E2),
and/or ligating (E3) enzymes and then targets them for
degradation by the 26S proteasome. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and ubiquitin's C-terminus. E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. Ubiquitin-E1 is a
single-chain protein with a weakly conserved two-fold
repeat. This CD represents the first repeat of Ub-E1.
Length = 286
Score = 410 bits (1057), Expect = e-136
Identities = 160/251 (63%), Positives = 197/251 (78%)
Query: 57 LYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLS 116
LYSRQLYVLGH+AM+++ S+VLISGLGGLGVEIAKN+IL+GVKSVTLHDT S SDLS
Sbjct: 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLS 60
Query: 117 SQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTNSTYDEQL 176
SQFYL E+D+G+NRAE S L++LNPYV TG L+ + KF+VVVLT+++ ++QL
Sbjct: 61 SQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGPLTTDELLKFQVVVLTDASLEDQL 120
Query: 177 AISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTTGENPVSVIIAGVTREAEGVVT 236
I++ H+ I I ADTRGLF +FCDFG+ FTV D GE P S +I+ ++++ GVVT
Sbjct: 121 KINEFCHSPGIKFISADTRGLFGSIFCDFGDEFTVYDPNGEEPKSGMISSISKDNPGVVT 180
Query: 237 CLDETRHGFEDGDYVTFSEVQGMTQLNGIEPRKVKVLGPYTFSIGDTTKFDEYVSGGIAT 296
CLDETRHGFEDGDYVTFSEV+GMT+LNG EPRK+KV GPYTFSIGDT+ F EY+ GGI T
Sbjct: 181 CLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSIGDTSSFSEYIRGGIVT 240
Query: 297 QVKQPKILKFL 307
QVK + F
Sbjct: 241 QVKLSPMAAFF 251
Score = 89.2 bits (222), Expect = 2e-19
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 392 NPVNAVIGGIVAQEVMKACSGKFHPIFQWLYFDAVECIDEN 432
+P+ A GG+ AQEV+KACSGKF P+ QWLYFDA+EC+ E+
Sbjct: 245 SPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECLPED 285
Score = 51.1 bits (123), Expect = 1e-06
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 445 YEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEK 504
Y Q+ + G +KL K + G G +G E+ KN + GV + + + D
Sbjct: 2 YSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKS-----VTLHDTKPCSW 56
Query: 505 SNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHEN 544
S+L+ QF R D+ + ++ + + +NP V +T
Sbjct: 57 SDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96
>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat
2-like. E1, a highly conserved small protein present
universally in eukaryotic cells, is part of cascade to
attach ubiquitin (Ub) covalently to substrate proteins.
This cascade consists of activating (E1), conjugating
(E2), and/or ligating (E3) enzymes and then targets them
for degradation by the 26S proteasome. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and ubiquitin's C-terminus. E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. A set of novel molecules
with a structural similarity to Ub, called Ub-like
proteins (Ubls), have similar conjugation cascades. In
contrast to ubiquitin-E1, which is a single-chain
protein with a weakly conserved two-fold repeat, many of
the Ubls-E1are a heterodimer where each subunit
corresponds to one half of a single-chain E1. This CD
represents the family homologous to the second repeat of
Ub-E1.
Length = 234
Score = 260 bits (666), Expect = 2e-80
Identities = 96/204 (47%), Positives = 131/204 (64%), Gaps = 14/204 (6%)
Query: 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKS 523
K +VGAG IGCELLKN A+MG G QI V DMD I+ SNLNRQFLFRP D+ +PKS
Sbjct: 1 KVLLVGAGGIGCELLKNLALMGFG-----QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKS 55
Query: 524 ATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCV 583
AA+A+ NPN + ++N+VGPE + ++D FFE I NALDN+ AR Y++ +
Sbjct: 56 EVAAEAVNDRNPNCKVVPYQNKVGPE--QDFNDTFFEQFHIIVNALDNIIARRYVNGMLI 113
Query: 584 YSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWAR 643
+ PL+ESGT G KGN+QV++P +TE + PP+K+ P+CT+ + P EH ++WAR
Sbjct: 114 FLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIASMPRLPEHCIEWAR 173
Query: 644 DNFEG-------IFRQSAENAAEY 660
IF+ S E A++Y
Sbjct: 174 MLQWDDPEHIQFIFQASNERASQY 197
Score = 74.2 bits (182), Expect = 1e-14
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 848 DTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVS 900
D H+ FI ASN RA+ Y I +K +AG+IIPA+ATT +VVAG+ +
Sbjct: 178 DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCA 230
Score = 58.0 bits (140), Expect = 3e-09
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 78 VLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTN 137
VL+ G GG+G E+ KN+ L G + + D +S+L+ QF KD+GR ++EV+
Sbjct: 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEA 61
Query: 138 LSQLNPYVSTKAYTGELSEA------FIKKFRVVV 166
++ NP Y ++ F ++F ++V
Sbjct: 62 VNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIV 96
Score = 31.4 bits (71), Expect = 2.0
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 744 KPLEFDVTDPLHLQYIYTGANLKAELYGIPQVRNLDAIAQMVKQVV 789
+ L++D DP H+Q+I+ +N +A Y I V + +++
Sbjct: 173 RMLQWD--DPEHIQFIFQASNERASQYNIRGVTYFL-TKGVAGRII 215
>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2.
UBA2 is part of the heterodimeric activating enzyme
(E1), specific for the SUMO family of ubiquitin-like
proteins (Ubls). E1 enzymes are part of a conjugation
cascade to attach Ub or Ubls, covalently to substrate
proteins consisting of activating (E1), conjugating
(E2), and/or ligating (E3) enzymes. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and Ubls C-terminus. The E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. Post-translational
modification by SUMO family of ubiquitin-like proteins
(Ublps) is involved in cell division, nuclear transport,
the stress response and signal transduction. UBA2
contains both the nucleotide-binding motif involved in
adenylation and the catalytic cysteine involved in the
thioester intermediate and Ublp transfer to E2.
Length = 312
Score = 181 bits (460), Expect = 1e-50
Identities = 76/184 (41%), Positives = 107/184 (58%), Gaps = 10/184 (5%)
Query: 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKS 523
K VVGAG IGCELLKN + G G +I + D+D I+ SNLNRQFLFR V + K+
Sbjct: 1 KVLVVGAGGIGCELLKNLVLTGFG-----EIHIIDLDTIDLSNLNRQFLFRKKHVGKSKA 55
Query: 524 ATAAKAIKVMNPNVNIT-YHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRC 582
A +A+ NPNV I YH N P+ ++ FF+ D + NALDN+ AR ++++ C
Sbjct: 56 QVAKEAVLSFNPNVKIVAYHANIKDPD----FNVEFFKQFDLVFNALDNLAARRHVNKMC 111
Query: 583 VYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWA 642
+ + PL+ESGT G G QV+ TE Y K+ P+CT+++ P+ H + WA
Sbjct: 112 LAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRSTPSQPIHCIVWA 171
Query: 643 RDNF 646
+ F
Sbjct: 172 KSLF 175
Score = 70.5 bits (173), Expect = 7e-13
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 836 LHITPLEFEKDDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVV 895
L L F+KDD +DF+ AA+NLR+ +GI R K +AG IIPAIATT +++
Sbjct: 205 LSWKELTFDKDDQ--DALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAII 262
Query: 896 AGLVS 900
AGL+
Sbjct: 263 AGLIV 267
Score = 67.0 bits (164), Expect = 8e-12
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 5/129 (3%)
Query: 78 VLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTN 137
VL+ G GG+G E+ KN++L+G + + D LS+L+ QF +K VG+++A+V+
Sbjct: 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEA 61
Query: 138 LSQLNPYVSTKAYTGELSE-----AFIKKFRVVVLTNSTYDEQLAISQITHANDIALIIA 192
+ NP V AY + + F K+F +V + ++++ A D+ LI +
Sbjct: 62 VLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIES 121
Query: 193 DTRGLFAQV 201
T G QV
Sbjct: 122 GTTGFLGQV 130
Score = 34.7 bits (80), Expect = 0.22
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 38/137 (27%)
Query: 700 CVAWAR---NHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLE-----FDVT 751
C+ WA+ + + + I +LL S + W K P PL FD
Sbjct: 167 CIVWAKSLFFLFNKVFKDDIERLL----------SMEELWKTRKP-PVPLSWKELTFDKD 215
Query: 752 DPLHLQYIYTGANLKAELYGIPQVRNLDAIAQMVKQVVVPEFTPKSGVTIAVTDA----- 806
D L ++ ANL++ ++GIP D I QM ++P IA T+A
Sbjct: 216 DQDALDFVAAAANLRSHVFGIPMKSRFD-IKQMAGN-IIP--------AIATTNAIIAGL 265
Query: 807 ----QLQNSNGDYDQDR 819
L+ +GD +Q R
Sbjct: 266 IVLEALKVLSGDKEQCR 282
>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat
1-like. E1, a highly conserved small protein present
universally in eukaryotic cells, is part of cascade to
attach ubiquitin (Ub) covalently to substrate proteins.
This cascade consists of activating (E1), conjugating
(E2), and/or ligating (E3) enzymes and then targets them
for degradation by the 26S proteasome. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and ubiquitin's C-terminus. The E1
also associates with E2 and promotes ubiquitin transfer
to the E2's catalytic cysteine. A set of novel molecules
with a structural similarity to Ub, called Ub-like
proteins (Ubls), have similar conjugation cascades. In
contrast to ubiquitin-E1, which is a single-chain
protein with a weakly conserved two-fold repeat, many of
the Ubls-E1are a heterodimer where each subunit
corresponds to one half of a single-chain E1. This CD
represents the family homologous to the first repeat of
Ub-E1.
Length = 198
Score = 152 bits (385), Expect = 5e-42
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 8/157 (5%)
Query: 57 LYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLS 116
LY RQ+ + G +A ++ S+ VLI G G LG EIAKN++L+G+ S+T+ D S DL
Sbjct: 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLG 60
Query: 117 SQFYL--SEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG------ELSEAFIKKFRVVVLT 168
S F+L + G NRA S+ L +LNP V E +++KF +V+ T
Sbjct: 61 SNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIAT 120
Query: 169 NSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDF 205
Y+ ++ + + I I T GL F DF
Sbjct: 121 EENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF 157
Score = 59.7 bits (145), Expect = 6e-10
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 445 YEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEK 504
Y+ Q+ ++G Q KL K ++GAGA+G E+ KN + G+ + I + D L+
Sbjct: 2 YDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDS-----ITIVDHRLVST 56
Query: 505 SNLNRQFLFRPHDVQ--QPKSATAAKAIKVMNPNVNITYHEN 544
+L F ++A + + ++ +NPNV ++ E
Sbjct: 57 EDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEE 98
Score = 48.2 bits (115), Expect = 5e-06
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 393 PVNAVIGGIVAQEVMKACSGKFHPIFQWLYFDAVE 427
P+ A +GG+VAQE +K+ SGKF P+ +D E
Sbjct: 158 PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFE 192
>gnl|CDD|216180 pfam00899, ThiF, ThiF family. This family contains a repeated
domain in ubiquitin activating enzyme E1 and members of
the bacterial ThiF/MoeB/HesA family.
Length = 134
Score = 147 bits (374), Expect = 3e-41
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQP 521
+ VVGAG +G + A GVG ++ + D D +E SNLNRQ LF D+ +P
Sbjct: 1 SSRVLVVGAGGLGSPAAEYLARAGVG-----KLTLVDFDTVELSNLNRQILFTESDIGKP 55
Query: 522 KSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRR 581
K+ A + ++ +NP+V + + R+ PE + + +D + +ALDN AR ++
Sbjct: 56 KAEVAKERLRAINPDVEVEAYPERLTPENL----EELLKGVDLVVDALDNFAARYLLNDA 111
Query: 582 CVYSRKPLLESGTLGTKGNSQVV 604
CV PL+ +G LG G V+
Sbjct: 112 CVKRGIPLISAGALGFDGQVTVI 134
Score = 79.9 bits (198), Expect = 1e-17
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 75 SSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVS 134
SS VL+ G GGLG A+ + +GV +TL D LS+L+ Q +E D+G+ +AEV+
Sbjct: 1 SSRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVA 60
Query: 135 HTNLSQLNPYVSTKAY----TGELSEAFIKKFRVVVLTNSTYDEQLAISQITHANDIALI 190
L +NP V +AY T E E +K +VV + + ++ I LI
Sbjct: 61 KERLRAINPDVEVEAYPERLTPENLEELLKGVDLVVDALDNFAARYLLNDACVKRGIPLI 120
Query: 191 IADTRGLFAQVF 202
A G QV
Sbjct: 121 SAGALGFDGQVT 132
>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3.
UBA3 is part of the heterodimeric activating enzyme
(E1), specific for the Rub family of ubiquitin-like
proteins (Ubls). E1 enzymes are part of a conjugation
cascade to attach Ub or Ubls, covalently to substrate
proteins. consisting of activating (E1), conjugating
(E2), and/or ligating (E3) enzymes. E1 activates
ubiquitin(-like) by C-terminal adenylation, and
subsequently forms a highly reactive thioester bond
between its catalytic cysteine and Ubls C-terminus. E1
also associates with E2 and promotes ubiquitin transfer
to the E2's catalytic cysteine. Post-translational
modification by Rub family of ubiquitin-like proteins
(Ublps) activates SCF ubiquitin ligases and is involved
in cell cycle control, signaling and embryogenesis. UBA3
contains both the nucleotide-binding motif involved in
adenylation and the catalytic cysteine involved in the
thioester intermediate and Ublp transfer to E2.
Length = 291
Score = 149 bits (378), Expect = 6e-40
Identities = 74/190 (38%), Positives = 109/190 (57%), Gaps = 20/190 (10%)
Query: 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKS 523
K V+GAG +GCELLKN A+ G I V DMD I+ SNLNRQFLFR D+ +PK+
Sbjct: 1 KILVIGAGGLGCELLKNLALSGFR-----NIHVIDMDTIDVSNLNRQFLFREKDIGKPKA 55
Query: 524 ATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCV 583
AAK + P VN+T H ++ +K D+ F+ + I LD++EAR +++ V
Sbjct: 56 EVAAKFVNDRVPGVNVTPHFGKI---QDK--DEEFYRQFNIIICGLDSIEARRWINGTLV 110
Query: 584 Y--------SRKPLLESGTLGTKGNSQVVVPHLTESYSSSQD--PPEKSIPICTLKNFPN 633
S PL++ GT G KG+++V++P +T S D PP+ + P+CT+ N P
Sbjct: 111 SLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPR 170
Query: 634 AIEHTLQWAR 643
EH +++A
Sbjct: 171 LPEHCIEYAS 180
Score = 64.3 bits (157), Expect = 5e-11
Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 78 VLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTN 137
+L+ G GGLG E+ KN+ LSG +++ + D +S+L+ QF EKD+G+ +AEV+
Sbjct: 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKF 61
Query: 138 LSQLNPYVSTKAYTGELS---EAFIKKFRVVVL 167
++ P V+ + G++ E F ++F +++
Sbjct: 62 VNDRVPGVNVTPHFGKIQDKDEEFYRQFNIIIC 94
Score = 44.3 bits (105), Expect = 2e-04
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 846 DDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVA 896
D D H++++ + RAA + I+ ++ + +IIPA+A+T +++A
Sbjct: 194 DGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIA 244
Score = 30.4 bits (69), Expect = 5.0
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 744 KPLEFDVTDPLHLQYIYTGANLKAELYGIPQV 775
PL+ D DP H++++Y A +A + I V
Sbjct: 191 VPLDGD--DPEHIEWLYQKALERAAQFNISGV 220
>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1.
Aos1 is part of the heterodimeric activating enzyme
(E1), specific for the SUMO family of ubiquitin-like
proteins (Ubls). E1 enzymes are part of a conjugation
cascade to attach Ub or Ubls, covalently to substrate
proteins consisting of activating (E1), conjugating
(E2), and/or ligating (E3) enzymes. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and Ubls C-terminus. The E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. Post-translational
modification by SUMO family of ubiquitin-like proteins
(Ublps) is involved in cell division, nuclear transport,
the stress response and signal transduction. Aos1
contains part of the adenylation domain.
Length = 197
Score = 142 bits (360), Expect = 1e-38
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 14/174 (8%)
Query: 57 LYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLS 116
LY RQ+ + G +A +R+ S+ +L+ GL GLG EIAKN++LSG+ S+T+ D + DL
Sbjct: 3 LYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLG 62
Query: 117 SQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTG---ELSEAFIKKFRVVVLTNSTYD 173
+QF + +D+G+NRAE S L LNP V T E E F +F VVV T +
Sbjct: 63 AQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRA 122
Query: 174 EQLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTTGENPVSVIIAGV 227
E + I+++ + GLF VF D PV+ ++ G+
Sbjct: 123 ELVKINELCRKLGVKFYATGVHGLFGFVFADL---LA--------PVAAVVGGI 165
Score = 59.6 bits (145), Expect = 6e-10
Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 445 YEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEK 504
Y+ Q+ ++G Q++L + ++G +G E+ KN + G+G+ + + D + +
Sbjct: 4 YDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGS-----LTILDDRTVTE 58
Query: 505 SNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDG 564
+L QFL D+ Q ++ + + ++ +NP V + +EK + FF D
Sbjct: 59 EDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKV---SVDTDDISEK--PEEFFSQFDV 113
Query: 565 -IANALDNVEARIYMDRRCVYSRKPLLESGTLGTKG 599
+A L E + ++ C +G G G
Sbjct: 114 VVATELSRAEL-VKINELCRKLGVKFYATGVHGLFG 148
Score = 48.4 bits (116), Expect = 4e-06
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 393 PVNAVIGGIVAQEVMKACSGKFHPIFQWLYFDAVEC 428
PV AV+GGI+AQ+V+ A S + P+ + FD
Sbjct: 157 PVAAVVGGILAQDVINALSKRESPLNNFFVFDGETS 192
>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 2
[Coenzyme metabolism].
Length = 254
Score = 137 bits (348), Expect = 2e-36
Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 14/207 (6%)
Query: 49 MDQDIDEGLYSRQLYVLGH--DAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHD 106
M D + YSRQ+ + G + +++ S VL+ G GGLG AK + L+GV +T+ D
Sbjct: 2 MLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVD 61
Query: 107 TTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKF 162
LS+L QF +E DVG+ +AEV+ L +LNP V AY L E I +F
Sbjct: 62 FDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQF 121
Query: 163 RVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNN--------FTVVDT 214
VV+ ++ + I+ I L+ G QV + F
Sbjct: 122 DVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPP 181
Query: 215 TGENPVSVIIAGVTREAEGVVTCLDET 241
G P S AGV GVV L
Sbjct: 182 PGLVPTSCDEAGVLGPLVGVVGSLQAL 208
Score = 124 bits (314), Expect = 8e-32
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 11/167 (6%)
Query: 443 SRYEGQVAIFGKNF--QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500
RY Q+ + G Q+KL + VVGAG +G K A+ GVG ++ + D D
Sbjct: 9 ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVG-----KLTIVDFD 63
Query: 501 LIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFE 560
+E SNL RQFLF DV +PK+ AAKA++ +NP V + + R+ E +
Sbjct: 64 TVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDEENA----EELIA 119
Query: 561 SLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPH 607
D + + DN E R ++ CV PL+ G +G +G V++P
Sbjct: 120 QFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPG 166
>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like
enzymes involved in molybdopterin and thiamine
biosynthesis family. The common reaction mechanism
catalyzed by MoeB and ThiF, like other E1 enzymes,
begins with a nucleophilic attack of the C-terminal
carboxylate of MoaD and ThiS, respectively, on the
alpha-phosphate of an ATP molecule bound at the active
site of the activating enzymes, leading to the formation
of a high-energy acyladenylate intermediate and
subsequently to the formation of a thiocarboxylate at
the C termini of MoaD and ThiS. MoeB, as the MPT
synthase (MoaE/MoaD complex) sulfurase, is involved in
the biosynthesis of the molybdenum cofactor, a
derivative of the tricyclic pterin, molybdopterin (MPT).
ThiF catalyzes the adenylation of ThiS, as part of the
biosynthesis pathway of thiamin pyrophosphate (vitamin
B1). .
Length = 228
Score = 131 bits (331), Expect = 2e-34
Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 12/186 (6%)
Query: 444 RYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
RY Q+ + G+ QEKL + VVGAG +G + A GVG ++ + D D+
Sbjct: 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVG-----KLGLVDDDV 55
Query: 502 IEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFES 561
+E SNL RQ L DV QPK+ AA+ ++ +NP+V I + R+ E +
Sbjct: 56 VELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDAENA----EELIAG 111
Query: 562 LDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSS-QDPPE 620
D + + DN R ++ CV KPL+ LG +G V +P Y +PP
Sbjct: 112 YDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEPPP 171
Query: 621 KSIPIC 626
+P C
Sbjct: 172 PGVPSC 177
Score = 65.6 bits (161), Expect = 8e-12
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 58 YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
YSRQ+ + +G + ++ ++ VL+ G GGLG A+ + +GV + L D LS+L
Sbjct: 2 YSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNL 61
Query: 116 SSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELS----EAFIKKFRVVV 166
Q +E DVG+ +AE + L +NP V +AY L E I + +V+
Sbjct: 62 QRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVL 116
Score = 31.7 bits (73), Expect = 1.4
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 388 AGNCNPVNAVIGGIVAQEVMKACSGKFHPIF-QWLYFDA 425
AG P+ VIG + A E +K G P+ + L FDA
Sbjct: 180 AGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDA 218
>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1)
of the ubiquitin-like proteins. This family includes
classical ubiquitin-activating enzymes E1,
ubiquitin-like (ubl) activating enzymes and other
mechanistic homologes, like MoeB, Thif1 and others. The
common reaction mechanism catalyzed by MoeB, ThiF and
the E1 enzymes begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD, ThiS and ubiquitin,
respectively, on the alpha-phosphate of an ATP molecule
bound at the active site of the activating enzymes,
leading to the formation of a high-energy acyladenylate
intermediate and subsequently to the formation of a
thiocarboxylate at the C termini of MoaD and ThiS.
Length = 143
Score = 115 bits (291), Expect = 4e-30
Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 9/139 (6%)
Query: 466 FVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSAT 525
+VG G +G E+ N A GVG +I + D D +E SNLNRQFL R D+ +PK+
Sbjct: 3 LLVGLGGLGSEIALNLARSGVG-----KITLIDFDTVELSNLNRQFLARQADIGKPKAEV 57
Query: 526 AAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYS 585
AA+ + +NP VN+T + + D F + +D + +A+DN+ R ++R C
Sbjct: 58 AARRLNELNPGVNVTAVPEGISEDN----LDDFLDGVDLVIDAIDNIAVRRALNRACKEL 113
Query: 586 RKPLLESGTLGTKGNSQVV 604
P++++G LG G+ QV+
Sbjct: 114 GIPVIDAGGLGLGGDIQVI 132
Score = 90.0 bits (224), Expect = 4e-21
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 78 VLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTN 137
VL+ GLGGLG EIA N+ SGV +TL D LS+L+ QF + D+G+ +AEV+
Sbjct: 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARR 61
Query: 138 LSQLNPYVSTKAYTGELSEA----FIKKFRVVVLTNSTYDEQLAISQITHANDIALIIAD 193
L++LNP V+ A +SE F+ +V+ + A+++ I +I A
Sbjct: 62 LNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAG 121
Query: 194 TRGLF--AQVF 202
GL QV
Sbjct: 122 GLGLGGDIQVI 132
>gnl|CDD|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein.
Length = 66
Score = 98.8 bits (247), Expect = 4e-25
Identities = 39/58 (67%), Positives = 46/58 (79%), Gaps = 2/58 (3%)
Query: 842 EFEKDDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLV 899
EF+KDDD H+DF+ AA+NLRA NYGI PADR K IAG IIPAIATT ++VAG+V
Sbjct: 1 EFDKDDDD--HLDFVYAAANLRAQNYGIPPADRFDVKGIAGNIIPAIATTNAIVAGIV 56
Score = 57.6 bits (140), Expect = 1e-10
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 747 EFDVTDPLHLQYIYTGANLKAELYGIPQVRNLDAIAQMVKQVVVPEFTPKSGVTIAVTDA 806
EFD D HL ++Y ANL+A+ YGIP + + + ++P + + +
Sbjct: 1 EFDKDDDDHLDFVYAAANLRAQNYGIPPA-DRFDVKGIAG-NIIPAIATTNAIVAGIVVL 58
Query: 807 QLQN 810
+L
Sbjct: 59 ELLK 62
>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase
ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF
family of proteins (pfam00899) include a number of
members encoded in the midst of thiamine biosynthetic
operons. This mix of known and putative ThiF proteins
shows a deep split in phylogenetic trees, with the
Escherichia. coli ThiF and the E. coli MoeB proteins
seemingly more closely related than E. coli ThiF and
Campylobacter (for example) ThiF. This model represents
the more widely distributed clade of ThiF proteins such
found in E. coli [Biosynthesis of cofactors, prosthetic
groups, and carriers, Thiamine].
Length = 202
Score = 98.6 bits (246), Expect = 2e-23
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 444 RYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
RY Q+ + G+ Q++L ++GAG +G A GVG I + D D
Sbjct: 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVG-----TIVIVDDDH 55
Query: 502 IEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFES 561
++ SNL RQ LF DV +PK AA+ ++ +N ++ +T + RV E + L +
Sbjct: 56 VDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLE----LLINN 111
Query: 562 LDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHL-TESYSSS-QDPP 619
+D + + DN R ++ CV PL+ + +G G V P D
Sbjct: 112 VDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPDIA 171
Query: 620 EKSIPIC 626
+ + P C
Sbjct: 172 D-TGPSC 177
Score = 72.8 bits (179), Expect = 2e-14
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
Query: 58 YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
Y+RQL + +G + +R+ +S VLI G GGLG A + +GV ++ + D LS+L
Sbjct: 2 YARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNL 61
Query: 116 SSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY----TGELSEAFIKKFRVVVLTNST 171
Q +E+DVGR + EV+ L +LN + A T E E I +V+
Sbjct: 62 QRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDN 121
Query: 172 YDEQLAISQITHANDIALIIADTRGLFAQV 201
+ + I+ A LI A G Q+
Sbjct: 122 FATRYLINDACVALGTPLISAAVVGFGGQL 151
>gnl|CDD|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active
site. Ubiquitin-activating enzyme (E1 enzyme) activates
ubiquitin by first adenylating with ATP its C-terminal
glycine residue and thereafter linking this residue to
the side chain of a cysteine residue in E1, yielding an
ubiquitin-E1 thiolester and free AMP. Later the
ubiquitin moiety is transferred to a cysteine residue on
one of the many forms of ubiquitin-conjugating enzymes
(E2). This domain carries the last of five conserved
cysteines that is part of the active site of the enzyme,
responsible for ubiquitin thiolester complex formation,
the active site being represented by the sequence motif
PICTLKNFP.
Length = 44
Score = 89.2 bits (222), Expect = 6e-22
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 608 LTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFR 651
+TE Y S DPPEKSIP+CTL++FP+ EH ++WARD FEG+F
Sbjct: 1 VTECYECSPDPPEKSIPVCTLRSFPSTPEHCIEWARDLFEGLFG 44
>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit
APPBP1. APPBP1 is part of the heterodimeric activating
enzyme (E1), specific for the Rub family of
ubiquitin-like proteins (Ubls). E1 enzymes are part of a
conjugation cascade to attach Ub or Ubls, covalently to
substrate proteins consisting of activating (E1),
conjugating (E2), and/or ligating (E3) enzymes. E1
activates ubiquitin(-like) by C-terminal adenylation,
and subsequently forms a highly reactive thioester bond
between its catalytic cysteine and Ubls C-terminus. E1
also associates with E2 and promotes ubiquitin transfer
to the E2's catalytic cysteine. Post-translational
modification by Rub family of ubiquitin-like proteins
(Ublps) activates SCF ubiquitin ligases and is involved
in cell cycle control, signaling and embryogenesis.
ABPP1 contains part of the adenylation domain.
Length = 425
Score = 87.7 bits (218), Expect = 4e-18
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 9/170 (5%)
Query: 58 YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSS 117
Y RQL + G + S+ V + G EI KN++L G+ S T+ D + DL +
Sbjct: 3 YDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGN 62
Query: 118 QFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE------AFIKKFRVVVLTNST 171
F+L +G++RAE + L +LNP V+ A +F +F VV+ TN
Sbjct: 63 NFFLDASSLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLP 122
Query: 172 YDEQLAISQITHANDIALIIADTRGLFAQV-FCDFGNNFTVVDTTGENPV 220
L ++ + + +I L+ + GL+ + T+V++ +N +
Sbjct: 123 ESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQL--KEHTIVESHPDNAL 170
Score = 52.3 bits (126), Expect = 9e-07
Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 444 RYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIE 503
+Y+ Q+ ++G++ Q L ++ A A G E+LKN + G+ G + D ++
Sbjct: 2 KYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSKVD 56
Query: 504 KSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITY 541
+ +L F + + ++ + ++ +NP+VN +
Sbjct: 57 EEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSA 94
Score = 41.1 bits (97), Expect = 0.002
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 357 DADQFL----ALAKESKLNNGELDEKLLQLFAKTAAG----NC----NPVNAVIGGIVAQ 404
DA + + K + + +K ++LF K AA + ++A +GGI AQ
Sbjct: 337 DAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGRSLEHNISAFMGGIAAQ 396
Query: 405 EVMKACSGKFHPIFQWLYFDAV 426
EV+K + ++ PI FD +
Sbjct: 397 EVIKLITKQYVPIDNTFIFDGI 418
>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional.
Length = 231
Score = 84.1 bits (208), Expect = 4e-18
Identities = 58/169 (34%), Positives = 82/169 (48%), Gaps = 10/169 (5%)
Query: 444 RYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIE 503
RY+ Q+ IFG QEKL K K VVG G +G + A GV G+I + D E
Sbjct: 9 RYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-----GRILLIDEQTPE 63
Query: 504 KSNLNRQFLFRPHDV-QQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESL 562
SNLNRQ L D+ + PK +A ++ N ++ I E VG +E+ D++ + +
Sbjct: 64 LSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKI---ETFVGRLSEENIDEV-LKGV 119
Query: 563 DGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTES 611
D I + LDN E R +D PL+ GT G +VP T+
Sbjct: 120 DVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKR 168
Score = 63.7 bits (155), Expect = 4e-11
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 58 YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSS 117
Y RQ+ + G + ++ + V + G+GGLG +A + +GV + L D LS+L+
Sbjct: 10 YDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNR 69
Query: 118 QFYLSEKDVGRNRAEVSHT-NLSQLNPYVSTKAYTGELSEAFI----KKFRVVVLTNSTY 172
Q E+D+G+N +S L + N + + + G LSE I K V+V +
Sbjct: 70 QILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNF 129
Query: 173 DEQLAISQITHANDIALIIADTRGLFAQV 201
+ + + H I L+ G + QV
Sbjct: 130 ETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158
>gnl|CDD|220201 pfam09358, UBA_e1_C, Ubiquitin-activating enzyme e1 C-terminal
domain. This presumed domain found at the C-terminus of
Ubiquitin-activating enzyme e1 proteins is functionally
uncharacterized.
Length = 124
Score = 78.0 bits (193), Expect = 4e-17
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 941 APKLKYYDVEWTLWDRFEINQEMTLKQFLDYFQNEHKLEITILL 984
APK KY D E+T+WDR+E+N ++TL++ +DYF+ ++ LE+T+L
Sbjct: 21 APKKKYNDKEFTIWDRWEVNGDLTLQELIDYFEEKYGLEVTMLS 64
Score = 45.3 bits (108), Expect = 1e-05
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 893 SVVAGLVSKKKIEPHVRALVFELCCQDESGEDVETTIV 930
S + VSKK I P + L E+ C+DE GEDV+ +
Sbjct: 87 SELVEEVSKKPIPPGQKYLDLEVSCEDEDGEDVDVPYI 124
>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB. This
model describes the molybdopterin biosynthesis protein
MoeB in E. coli and related species. The enzyme
covalently modifies the molybdopterin synthase MoaD by
sulfurylation. This enzyme is closely related to ThiF, a
thiamine biosynthesis enzyme that modifies ThiS by an
analogous adenylation. Both MoeB and ThiF belong to the
HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of
cofactors, prosthetic groups, and carriers,
Molybdopterin].
Length = 240
Score = 79.5 bits (196), Expect = 2e-16
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Query: 444 RYEGQVAIFGKNF--QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
RY Q+ + G +F QE L + +VG G +GC + A GVG + + D D
Sbjct: 4 RYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVG-----NLTLLDFDT 58
Query: 502 IEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFES 561
+ SNL RQ L ++ QPK +A A+ +NP++ I N + + +
Sbjct: 59 VSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAI----NPINAKLDDAELAALIAE 114
Query: 562 LDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVV 605
D + + DNVE R ++R+C ++ PL+ + +G QV V
Sbjct: 115 HDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEG--QVSV 156
Score = 71.0 bits (174), Expect = 2e-13
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 58 YSRQLYVLGHD--AMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
Y+RQ+ + G D + +S VLI GLGGLG ++ + +GV ++TL D SLS+L
Sbjct: 5 YNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL 64
Query: 116 SSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVVLTNST 171
Q S+ ++G+ + E + L+Q+NP+++ +L + A I + +VV
Sbjct: 65 QRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDN 124
Query: 172 YDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTT----------GENPVS 221
+ + +++ A + L+ + QV + FT D GEN +S
Sbjct: 125 VEVRNQLNRQCFAAKVPLVSGAAIRMEGQV-----SVFTYQDGEPCYRCLSRLFGENALS 179
Query: 222 VIIAGVTREAEGVVTCL 238
+ AGV GVV L
Sbjct: 180 CVEAGVMAPVVGVVGSL 196
>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB;
Provisional.
Length = 245
Score = 79.1 bits (196), Expect = 3e-16
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 444 RYEGQVAIFGKNF--QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
RY Q+ + G +F QEKL + VVG G +GC + A GVG + + D D
Sbjct: 12 RYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVG-----TLTLVDFDT 66
Query: 502 IEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFES 561
+ SNL RQ L + QPK +A A+ +NP++ I R+ + L
Sbjct: 67 VSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLDDDE---LAAL-IAG 122
Query: 562 LDGIANALDNVEARIYMDRRCVYSRKPLLESG 593
D + + DNV R ++R C ++KPL+ SG
Sbjct: 123 HDLVLDCTDNVATRNQLNRACFAAKKPLV-SG 153
Score = 58.7 bits (143), Expect = 3e-09
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 58 YSRQ--LYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
Y+RQ L D ++ ++ VL+ GLGGLG ++ + +GV ++TL D SLS+L
Sbjct: 13 YNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNL 72
Query: 116 SSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVV 166
Q + +G+ + E + L+++NP+++ + L + A I +V+
Sbjct: 73 QRQVLHDDATIGQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVL 127
>gnl|CDD|214955 smart00985, UBA_e1_C, Ubiquitin-activating enzyme e1 C-terminal
domain. This presumed domain found at the C terminus of
Ubiquitin-activating enzyme e1 proteins is functionally
uncharacterised.
Length = 128
Score = 73.1 bits (180), Expect = 3e-15
Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 941 APKLKYYDV-EWTLWDRFEINQ-EMTLKQFLDYFQNEHKLEITILL 984
APK KY D +WTLWDR E+ ++TLK+ LDYF+ ++ LE+T+L
Sbjct: 21 APKTKYRDKDKWTLWDRLEVPGGDITLKELLDYFEEKYGLEVTMLS 66
Score = 50.0 bits (120), Expect = 3e-07
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 899 VSKKKIEPHVRALVFELCCQDESGEDVE 926
V+KKK+ PHV+ LV E+ C+DE EDVE
Sbjct: 97 VTKKKLPPHVKYLVLEVSCEDEDDEDVE 124
>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis
ThiF/MoeB-like protein; Validated.
Length = 339
Score = 76.6 bits (189), Expect = 8e-15
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 444 RYEGQV--AIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
RY Q + G+ Q+KL + ++GAGA+G A M V AG G ++ + D D
Sbjct: 4 RYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTAN----AEMLVRAGVG-KVTIVDRDY 58
Query: 502 IEKSNLNRQFLFRPHDVQQ--PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFF 559
+E SNL RQ L+ DV+ PK+ A K ++ +N +V + V E +
Sbjct: 59 VEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL----EELV 114
Query: 560 ESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLT 609
+D I +A DN E R ++ P + +G+ G S ++P T
Sbjct: 115 TGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIPGKT 164
Score = 41.9 bits (99), Expect = 0.001
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 58 YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
YSRQ +G + +++ VLI G G LG A+ ++ +GV VT+ D S+L
Sbjct: 5 YSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNL 64
Query: 116 SSQFYLSEKDV 126
Q +E DV
Sbjct: 65 QRQQLYTESDV 75
>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 1
[Coenzyme metabolism].
Length = 263
Score = 74.6 bits (184), Expect = 1e-14
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 444 RYEGQVAIFGKNFQEKLGKLKYFVVGAGAIG---CELLKNFAMMGVGAGPGGQIFVTDMD 500
R+ G ++G++ EKL + VVG G +G E L A G+G +I + DMD
Sbjct: 12 RFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEAL---ARSGIG-----RITLIDMD 63
Query: 501 LIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFE 560
+ +N NRQ D+ +PK + IK +NP +T + + E +DL +
Sbjct: 64 DVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFITEEN---LEDLLSK 120
Query: 561 SLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN-SQVVVPHLTESYSSSQDP 618
D + +A+D+V A++ + C ++ P++ S G K + +++ V ++++ QDP
Sbjct: 121 GFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRIQVADISKTI---QDP 176
Score = 47.3 bits (113), Expect = 2e-05
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 65 LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEK 124
G D + ++ + V + G+GG+G + + SG+ +TL D +++ + Q +
Sbjct: 20 YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLG 79
Query: 125 DVGRNRAEVSHTNLSQLNPYVSTKA----YTGELSEAFIKK 161
D+G+ + EV + Q+NP A T E E + K
Sbjct: 80 DIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSK 120
>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ;
Validated.
Length = 392
Score = 73.2 bits (180), Expect = 2e-13
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 444 RYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
RY + I G + Q++L + V+GAG +G L A GVG + + + D+
Sbjct: 22 RYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGT-----LGIVEFDV 76
Query: 502 IEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFES 561
+++SNL RQ + DV + K+ +A +I +NP VN+ HE R+ + + F
Sbjct: 77 VDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRL--DPSNAVE--LFSQ 132
Query: 562 LDGIANALDNVEARIYMDRRCVYSRKP 588
D I + DN R ++ V + KP
Sbjct: 133 YDLILDGTDNFATRYLVNDAAVLAGKP 159
Score = 47.8 bits (114), Expect = 2e-05
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 58 YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
YSR L + +G D +R+ ++ VL+ G GGLG + +GV ++ + + S+L
Sbjct: 23 YSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNL 82
Query: 116 SSQFYLSEKDVGRNRAEVSHTNLSQLNPYV 145
Q + DVGR++A+ + ++ ++NP V
Sbjct: 83 QRQVIHGQSDVGRSKAQSARDSIVEINPLV 112
>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB;
Validated.
Length = 376
Score = 72.4 bits (178), Expect = 3e-13
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 457 QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPH 516
Q +L + + ++GAG +G A GVG + + D D++++SNL RQ L
Sbjct: 130 QRRLLEARVLLIGAGGLGSPAALYLAAAGVG-----TLGIVDHDVVDRSNLQRQILHTED 184
Query: 517 DVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARI 576
V QPK +AA+ + +NP+V + + RV + + L + +D + + DN R
Sbjct: 185 RVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDN---VEAL-LQDVDVVVDGADNFPTRY 240
Query: 577 YMDRRCVYSRKPL 589
++ CV KPL
Sbjct: 241 LLNDACVKLGKPL 253
Score = 47.7 bits (114), Expect = 2e-05
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 58 YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
YSR L + +G + RR+ + VL+ G GGLG A + +GV ++ + D S+L
Sbjct: 116 YSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNL 175
Query: 116 SSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY----TGELSEAFIKKFRVVV 166
Q +E VG+ + + + L+ LNP V +A T + EA ++ VVV
Sbjct: 176 QRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVV 230
>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of
ubiquitin-like proteins related to the E.coli
hypothetical protein ygdL. The common reaction mechanism
catalyzed by E1-like enzymes begins with a nucleophilic
attack of the C-terminal carboxylate of the
ubiquitin-like substrate, on the alpha-phosphate of an
ATP molecule bound at the active site of the activating
enzymes, leading to the formation of a high-energy
acyladenylate intermediate and subsequently to the
formation of a thiocarboxylate at the C termini of the
substrate. The exact function of this family is unknown.
Length = 231
Score = 69.9 bits (172), Expect = 3e-13
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 452 FGKNFQEKLGKLKYFVVGAGAIG---CELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLN 508
+G+ EKL VVG G +G E L A GVG ++ + D D++ SNLN
Sbjct: 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEAL---ARSGVG-----KLTLIDFDVVCVSNLN 52
Query: 509 RQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANA 568
RQ V +PK A+ I+ +NP + E + P+ +DL D + +A
Sbjct: 53 RQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNS---EDLLGGDPDFVVDA 109
Query: 569 LDNVEARIYMDRRCVYSRKPLLESGTLGTKGN-SQVVVPHLTESYSSSQDP 618
+D++ A++ + C + P++ S G K + +++ V ++++ DP
Sbjct: 110 IDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTS---GDP 157
Score = 44.9 bits (107), Expect = 7e-05
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 65 LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEK 124
G + + ++ ++ V + GLGG+G A+ + SGV +TL D +S+L+ Q +
Sbjct: 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLS 60
Query: 125 DVGRNRAEVSHTNLSQLNPYVSTKA----YTGELSEAFI-KKFRVVV 166
VG+ + EV + +NP A T + SE + VV
Sbjct: 61 TVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVV 107
>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated.
Length = 370
Score = 70.3 bits (172), Expect = 1e-12
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 452 FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQF 511
FG QE+L + V+GAG +GC +++ A GVG I + D D ++ SN++RQ
Sbjct: 31 FGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGT-----ITLIDDDTVDVSNIHRQI 85
Query: 512 LFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPE 549
LF DV +PK AA+ +K + P++ + R+ E
Sbjct: 86 LFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAE 123
Score = 49.9 bits (119), Expect = 4e-06
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 59 SRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLS 116
+RQL + G + R+ ++ VL+ G GGLG +++ +GV ++TL D +S++
Sbjct: 23 ARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIH 82
Query: 117 SQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELS 155
Q DVGR + EV+ L ++ P + A L+
Sbjct: 83 RQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLT 121
>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB;
Validated.
Length = 355
Score = 67.6 bits (165), Expect = 8e-12
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 443 SRYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMD 500
+RY Q+ + G+ Q+ L K V+GAG +G L A GVG I + D D
Sbjct: 7 ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVG-----HITIIDDD 61
Query: 501 LIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFE 560
++ SNL+RQ + V QPK+ +A +A+ +NP+V +T R+
Sbjct: 62 TVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTWSNALD----ELR 117
Query: 561 SLDGIANALDNVEAR 575
D I + DN + R
Sbjct: 118 DADVILDGSDNFDTR 132
Score = 49.5 bits (118), Expect = 5e-06
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 53 IDEGLYSRQ--LYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTAT 110
+D Y RQ L +G + + + V + G GGLG + +GV +T+ D
Sbjct: 4 LDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTV 63
Query: 111 SLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYV 145
LS+L Q S VG+ +AE + + LNP V
Sbjct: 64 DLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDV 98
>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF;
Provisional.
Length = 212
Score = 64.5 bits (158), Expect = 2e-11
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 445 YEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEK 504
+ EKL K K + GAG +G N A+ +G G V D D++E
Sbjct: 11 EAMLASRHTPKLLEKLKKAKVGIAGAGGLG----SNIAVALARSGVGNLKLV-DFDVVEP 65
Query: 505 SNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDG 564
SNLNRQ F + PK + + +NP V I H ++ + + + F+ D
Sbjct: 66 SNLNRQQYF-ISQIGMPKVEALKENLLEINPFVEIEAHNEKIDEDN--IEE--LFKDCDI 120
Query: 565 IANALDNVEA 574
+ A DN E
Sbjct: 121 VVEAFDNAET 130
Score = 56.4 bits (137), Expect = 1e-08
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 51 QDIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTAT 110
++ + L SR + ++ + V I+G GGLG IA + SGV ++ L D
Sbjct: 8 EEFEAMLASR----HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63
Query: 111 SLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE 156
S+L+ Q Y +G + E NL ++NP+V +A+ ++ E
Sbjct: 64 EPSNLNRQQYFIS-QIGMPKVEALKENLLEINPFVEIEAHNEKIDE 108
>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like
protein; Provisional.
Length = 338
Score = 63.6 bits (155), Expect = 1e-10
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 25/193 (12%)
Query: 444 RYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
RY Q+ G+ Q K+ + +VGAGA+G + G+G + + D D
Sbjct: 4 RYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGK-----LTIADRDY 58
Query: 502 IEKSNLNRQFLFRPHDVQQ--PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFF 559
+E SNL RQ L+ D +Q PK+ A + ++ +N V I V E +
Sbjct: 59 VEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEE----LV 114
Query: 560 ESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPP 619
+ +D I +A DN + R+ ++ P + G +G+ G + ++P T
Sbjct: 115 KEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLR------ 168
Query: 620 EKSIPICTLKNFP 632
C +++ P
Sbjct: 169 ------CLMEHVP 175
Score = 47.4 bits (113), Expect = 2e-05
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 58 YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
YSRQ+ +G + R++ VLI G G LG A+ ++ +G+ +T+ D S+L
Sbjct: 5 YSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNL 64
Query: 116 SSQFYLSEKDVGRNR---AEVSHTNLSQLNPYVSTKAY----TGELSEAFIKKFRVVVLT 168
Q +E+D + + A + +L ++N V T E E +K+ +++
Sbjct: 65 QRQQLYTEED-AKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDA 123
Query: 169 NSTYDEQLAISQITHANDIALI 190
+D +L I+ ++ +I I
Sbjct: 124 TDNFDTRLLINDLSQKYNIPWI 145
>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2.
Members of the HesA/MoeB/ThiF family of proteins
(pfam00899) include a number of members encoded in the
midst of thiamine biosynthetic operons. This mix of
known and putative ThiF proteins shows a deep split in
phylogenetic trees, with one the E. coli ThiF and the E.
coli MoeB proteins seemingly more closely related than
E. coli ThiF and Campylobacter (for example) ThiF. This
model represents the divergent clade of putative ThiF
proteins such found in Campylobacter [Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 200
Score = 59.9 bits (145), Expect = 5e-10
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 78 VLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTN 137
V I GLGGLG +A N+ +G+ + L D S+L+ Q Y + VG + E N
Sbjct: 24 VAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKA-SQVGEPKTEALKEN 82
Query: 138 LSQLNPYVSTKAYTGELSEAFIKKF 162
+S++NPY +AY +++E I KF
Sbjct: 83 ISEINPYTEIEAYDEKITEENIDKF 107
Score = 54.5 bits (131), Expect = 3e-08
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 449 VAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLN 508
VA +KL + + G G +G + N A G+G ++ + D D++E SNLN
Sbjct: 8 VARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIG-----KLILVDFDVVEPSNLN 62
Query: 509 RQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANA 568
RQ ++ V +PK+ + I +NP I ++ ++ TE+ D FF+ D + A
Sbjct: 63 RQ-QYKASQVGEPKTEALKENISEINPYTEIEAYDEKI---TEENIDK-FFKDADIVCEA 117
Query: 569 LDNVEARIYM 578
DN EA+ +
Sbjct: 118 FDNAEAKAML 127
>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like. Member of superfamily of
activating enzymes (E1) of the ubiquitin-like proteins.
The common reaction mechanism catalyzed by E1-like
enzymes begins with a nucleophilic attack of the
C-terminal carboxylate of the ubiquitin-like substrate,
on the alpha-phosphate of an ATP molecule bound at the
active site of the activating enzymes, leading to the
formation of a high-energy acyladenylate intermediate
and subsequently to the formation of a thiocarboxylate
at the C termini of the substrate. The exact function of
this family is unknown.
Length = 174
Score = 58.9 bits (143), Expect = 6e-10
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 78 VLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTN 137
V I+G GGLG IA + SGV ++ L D S+L+ Q Y +G + E N
Sbjct: 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLS-QIGEPKVEALKEN 60
Query: 138 LSQLNPYVSTKAYTGELSE 156
L ++NP+V +A ++ E
Sbjct: 61 LREINPFVKIEAINIKIDE 79
Score = 50.5 bits (121), Expect = 5e-07
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 467 VVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATA 526
+ GAG +G + A GVG + + D D++E SNLNRQ + + +PK
Sbjct: 4 IAGAGGLGSNIAVLLARSGVG-----NLKLVDFDVVEPSNLNRQQ-YFLSQIGEPKVEAL 57
Query: 527 AKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEAR 575
+ ++ +NP V I ++ E + LF + D + A DN E +
Sbjct: 58 KENLREINPFVKIEAINIKI---DENNLEGLFGDC-DIVVEAFDNAETK 102
>gnl|CDD|140272 PTZ00245, PTZ00245, ubiquitin activating enzyme; Provisional.
Length = 287
Score = 54.7 bits (131), Expect = 8e-08
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 58 YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSS 117
Y RQ+ + G +++ + V + G+ G E AKN++L+GV++V + D + +D+ +
Sbjct: 9 YDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCT 68
Query: 118 QFYLSEKDVGRNRAEVSHTNLSQLNPYVS 146
YL + + G R + L +LNP+VS
Sbjct: 69 N-YLMQGEAGGTRGARALGALQRLNPHVS 96
Score = 34.6 bits (79), Expect = 0.21
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 444 RYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIE 503
RY+ Q+ ++GK+ Q++L + G E KN + GV A + V D L+
Sbjct: 8 RYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRA-----VAVADEGLVT 62
Query: 504 KSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNI 539
+++ +L + + + A A A++ +NP+V++
Sbjct: 63 DADVCTNYLMQ-GEAGGTRGARALGALQRLNPHVSV 97
>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated.
Length = 390
Score = 55.1 bits (133), Expect = 1e-07
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 457 QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPH 516
Q++L +G G +G LL A G+G +I + D D+++ SNL RQ +
Sbjct: 33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIG-----RIGIVDFDVVDSSNLQRQVIHGTS 87
Query: 517 DVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARI 576
V +PK +A I +NP + +E R+ +E D D + + DN R
Sbjct: 88 WVGKPKIESAKNRILEINPYCQVDLYETRL--SSENALD--ILAPYDVVVDGTDNFPTRY 143
Query: 577 YMDRRCVYSRKP 588
++ CV KP
Sbjct: 144 LVNDACVLLNKP 155
Score = 37.4 bits (87), Expect = 0.032
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 58 YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
YSR L + +G + +R+ ++ VL G GGLG + + +G+ + + D S+L
Sbjct: 19 YSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNL 78
Query: 116 SSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSEA----FIKKFRVVV 166
Q VG+ + E + + ++NPY Y LS + + VVV
Sbjct: 79 QRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVV 133
>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional.
Length = 268
Score = 51.7 bits (124), Expect = 5e-07
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 443 SRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLI 502
R+ G ++G+ + VVG G +G + A G+GA I + DMD +
Sbjct: 11 QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGA-----ITLIDMDDV 65
Query: 503 EKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESL 562
+N NRQ +V K+ A+ I+ +NP +T ++ + P+ Y F
Sbjct: 66 CVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGF--- 122
Query: 563 DGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGN-SQVVVPHLTESYSSSQDP 618
+ +A+D+V + + C ++ PL+ +G G + + +Q+ V L ++ QDP
Sbjct: 123 SYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAKTI---QDP 176
Score = 39.4 bits (92), Expect = 0.006
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 61 QLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFY 120
+LY G A++ A + + + G+GG+G A+ + +G+ ++TL D +++ + Q +
Sbjct: 18 RLY--GEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIH 75
Query: 121 LSEKDVGRNRAEVSHTNLSQLNP 143
+VG +AEV + Q+NP
Sbjct: 76 ALRDNVGLAKAEVMAERIRQINP 98
>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional.
Length = 989
Score = 50.5 bits (120), Expect = 5e-06
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 58 YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSS 117
+SR L ++ + RR+ S V I+GLGG+G + +G+ + L D A S +L+
Sbjct: 315 FSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNR 374
Query: 118 QFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY----TGELSEAFIKKFRVVV 166
Q+ S GR + +V +NP++ +++ E +AF+K ++V
Sbjct: 375 QYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLV 427
>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional.
Length = 679
Score = 47.9 bits (114), Expect = 2e-05
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%)
Query: 449 VAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLN 508
+ +F QE+L + K + G G +G L G+G + + D D E N+N
Sbjct: 30 IGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIG-----RFHIADFDQFEPVNVN 84
Query: 509 RQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANA 568
RQF R +PK A + +NP + IT + + D F + +D + +
Sbjct: 85 RQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINADNM----DAFLDGVDVVLDG 140
Query: 569 LDNVEARIYMDRRCVYSRK-----PLLESGTLG 596
LD + I RR +++ P++ +G LG
Sbjct: 141 LDFFQFEI---RRTLFNMAREKGIPVITAGPLG 170
Score = 34.5 bits (79), Expect = 0.36
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 58 YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSS 117
+SR + + R+A + V I G+GG+G ++ +G+ + D +++
Sbjct: 26 FSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNR 85
Query: 118 QFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY----TGELSEAFIKKFRVVV 166
QF GR + V +NP++ + + +AF+ VV+
Sbjct: 86 QFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVL 138
>gnl|CDD|181302 PRK08223, PRK08223, hypothetical protein; Validated.
Length = 287
Score = 44.3 bits (105), Expect = 2e-04
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 457 QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPH 516
Q++L + + G G +G L A +G+G + D D+ E N NRQ
Sbjct: 22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGK-----FTIADFDVFELRNFNRQAGAMMS 76
Query: 517 DVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDNVEARI 576
+ +PK+ A+ ++ +NP + I +G E + LDG+ +D ++
Sbjct: 77 TLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAF-------LDGVDVYVDGLDFFE 129
Query: 577 YMDRRCVY 584
+ RR V+
Sbjct: 130 FDARRLVF 137
Score = 31.2 bits (71), Expect = 2.4
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 52 DIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLG----VEIAKNVILSGVKSVTLHDT 107
D DE + R L + +R+ +S V I+GLGG+G + +A+ G+ T+ D
Sbjct: 5 DYDEA-FCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLAR----LGIGKFTIADF 59
Query: 108 TATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSEAFIKKF 162
L + + Q +GR +AEV + +NP + +A+ + + F
Sbjct: 60 DVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAF 114
>gnl|CDD|163448 TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein. A novel
genetic system characterized by six major proteins,
included a ParB homolog and a ThiF homolog, is
designated PRTRC, or ParB-Related,ThiF-Related Cassette.
This family is the PRTRC system ThiF family protein.
Length = 244
Score = 43.1 bits (102), Expect = 3e-04
Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 31/190 (16%)
Query: 462 KLKYFVVGAGAIGCELLKNF-----AMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPH 516
+ +VGAG G +++ A+ +G G + V D D + ++N+ RQ F P
Sbjct: 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPA 69
Query: 517 DVQQPKSATAAKAIKVMNPNVNITY------HENRVGPETEKVYDDLFFESLD------G 564
DV Q KAI ++N +N H RV + D+ +D
Sbjct: 70 DVGQ------NKAIVLVN-RLNQAMGTDWTAHPERVERSSTLHRPDIVIGCVDNRAARLA 122
Query: 565 IANALDNVEA--RIYMDRRC-VYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDP--- 618
I A + + ++D + +L KG +++ +PH+ E + DP
Sbjct: 123 ILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGENRLRLPHVGELFPELIDPSVD 182
Query: 619 PEKSIPICTL 628
P+ P C+L
Sbjct: 183 PDDDRPSCSL 192
>gnl|CDD|238763 cd01486, Apg7, Apg7 is an E1-like protein, that activates two
different ubiquitin-like proteins, Apg12 and Apg8, and
assigns them to specific E2 enzymes, Apg10 and Apg3,
respectively. This leads to the covalent conjugation of
Apg8 with phosphatidylethanolamine, an important step in
autophagy. Autophagy is a dynamic membrane phenomenon
for bulk protein degradation in the lysosome/vacuole.
Length = 307
Score = 41.2 bits (97), Expect = 0.002
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 464 KYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQ--QP 521
K ++GAG +GC + +N ++G G I D + SN RQ LF D + +P
Sbjct: 1 KCLLLGAGTLGCNVARN--LLGWGVR---HITFVDSGKVSYSNPVRQSLFTFEDCKGGKP 55
Query: 522 KSATAAKAIKVMNPNVNITYH 542
K+ AA+ +K + P+++ T
Sbjct: 56 KAEAAAERLKEIFPSIDATGI 76
Score = 37.0 bits (86), Expect = 0.035
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 78 VLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQ--FYLSEKDVGRNRAEVSH 135
L+ G G LG +A+N++ GV+ +T D+ S S+ Q F + G+ +AE +
Sbjct: 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAA 61
Query: 136 TNLSQLNPYVSTKAY 150
L ++ P +
Sbjct: 62 ERLKEIFPSIDATGI 76
>gnl|CDD|236122 PRK07877, PRK07877, hypothetical protein; Provisional.
Length = 722
Score = 39.6 bits (93), Expect = 0.009
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 457 QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRP- 515
QE+LG+L+ VVG ++G + A G+ G++ + D D +E SNLNR P
Sbjct: 102 QERLGRLRIGVVGL-SVGHAIAHTLAAEGLC----GELRLADFDTLELSNLNRV----PA 152
Query: 516 --HDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLD 563
D+ K+ AA+ I ++P + + + + + D F + LD
Sbjct: 153 GVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNV----DAFLDGLD 198
>gnl|CDD|233388 TIGR01381, E1_like_apg7, E1-like protein-activating enzyme
Gsa7p/Apg7p. This model represents a family of
eukaryotic proteins found in animals, plants, and
yeasts, including Apg7p (YHR171W) from Saccharomyces
cerevisiae and GSA7 from Pichia pastoris. Members are
about 650 to 700 residues in length and include a
central domain of about 150 residues shared with the
ThiF/MoeB/HesA family of proteins. A low level of
similarity to ubiquitin-activating enzyme E1 is
described in a paper on peroxisome autophagy mediated by
GSA7, and is the basis of the name ubiquitin activating
enzyme E1-like protein. Members of the family appear to
be involved in protein lipidation events analogous to
ubiquitination and required for membrane fusion events
during autophagy.
Length = 664
Score = 39.2 bits (91), Expect = 0.012
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 49 MDQDIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTT 108
++ +D L + + + R + VL+ G G LG +A+ +I GV+ +T D
Sbjct: 312 AERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371
Query: 109 ATSLSDLSSQFYLSEKDV---GRNRAEVSHTNLSQLNPYVSTKAY 150
S S+ Q + +D GR +AE + L ++ P + +
Sbjct: 372 KVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGH 416
Score = 38.0 bits (88), Expect = 0.026
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 21/134 (15%)
Query: 458 EKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHD 517
E+ +LK ++GAG +GC + + ++G G I D + SN RQ L D
Sbjct: 334 ERYSQLKVLLLGAGTLGCNVAR--CLIGWGVR---HITFVDNGKVSYSNPVRQSLSNFED 388
Query: 518 VQ---QPKSATAAKAIKVMNPNVNITYH-----------ENRVGPETEKVYDDL--FFES 561
+ K+ TA KA+K + P++ T H + + PE EK L +
Sbjct: 389 CLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKD 448
Query: 562 LDGIANALDNVEAR 575
D + LD+ EAR
Sbjct: 449 HDVVFLLLDSREAR 462
>gnl|CDD|223773 COG0701, COG0701, Predicted permeases [General function prediction
only].
Length = 317
Score = 33.0 bits (76), Expect = 0.80
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 396 AVIGGIVAQEVMKACSGKFHPIFQWLYFDAVECIDENIAETDAIVNGSRYEGQVAIFGKN 455
AV+ G++ ++ K I + A R + N
Sbjct: 136 AVLIGLIVSKLFKLWQSVELFILPSWTASPLH-GHGPSAAGFKSFLKERLKR----ALWN 190
Query: 456 FQEKLGKL-KYFVVG---AGAIGCELLKNFAMMGVGAGPGGQIFV 496
++ G + Y ++G AGAI L ++ + +G+ + +
Sbjct: 191 AIDEFGSVGPYLIIGVLIAGAIQVYLPQDILLSYLGSNGIFSVLL 235
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 32.5 bits (75), Expect = 1.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 431 ENIAETDAIVNGSRYEGQVAIFGKNFQEKLGKL 463
+I E + N S Y Q +IF K+ K KL
Sbjct: 389 NDIEEAIELANKSNYGLQASIFTKD-INKARKL 420
>gnl|CDD|218794 pfam05883, Baculo_RING, Baculovirus U-box/Ring-like domain. This
family consists of several Baculovirus proteins of
around 130 residues in length. The function of this
family is unknown, but it appears to be related to the
U-box and ring finger domain by profile-profile
comparison.
Length = 135
Score = 31.1 bits (71), Expect = 1.3
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 682 LENVKHALVDERPLNIKDCVAWARNHWQDQYNNQIRQLLFNFPPE 726
LE + HA D+R W R +D +N I+ FNFPP+
Sbjct: 53 LEKMFHAECDKR---------WKRERKRDPFNRNIK-YRFNFPPK 87
>gnl|CDD|234468 TIGR04095, dnd_restrict_1, DNA phosphorothioation system
restriction enzyme. The DNA phosphorothioate
modification system dnd (DNA instability during
electrophoresis) recently has been shown to provide a
modification essential to a restriction system. This
protein family was detected by Partial Phylogenetic
Profiling as linked to dnd, and its members usually are
clustered with the dndABCDE genes.
Length = 451
Score = 32.3 bits (74), Expect = 1.5
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 141 LNP---YVSTKAYTGELSEAF------IKKFRVVVLTNSTYDEQLAISQITHANDIALII 191
LNP Y S + ELS +KF ++ TN+T+ + SQ+ L+I
Sbjct: 79 LNPILCYESVSNWQSELSTGLYNLNSGNQKFLAIITTNATFIGKNFQSQLRRFPGKTLLI 138
Query: 192 AD 193
D
Sbjct: 139 GD 140
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 32.1 bits (74), Expect = 1.7
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 31/145 (21%)
Query: 429 IDENIAETDAIV--NGSR---YEGQVAIFGKNF--------QEKLGKLKYFVVGAGAIGC 475
++ E IV GSR G I G +KL K V+G G IG
Sbjct: 124 VNGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSDDAFELDKLPK-SLAVIGGGVIGL 182
Query: 476 ELLKNFAMMGV---GAGPGGQIF-VTDMDLIE--KSNLNRQFLFRPHDVQQPKSATAAKA 529
EL + + +GV G +I + D ++ + + L+++F + AK
Sbjct: 183 ELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKEFKIK----------LGAKV 232
Query: 530 IKVMNP-NVNITYHENRVGPETEKV 553
V + + E ET +
Sbjct: 233 TSVEKSGDEKVEELEKGGKTETIEA 257
>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed.
Length = 404
Score = 31.6 bits (73), Expect = 2.4
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 19/64 (29%)
Query: 158 FIKKFRVVVLTNSTYD---------------EQLAISQITHANDIALI----IADTRGLF 198
+ KK+ V + S++ EQ ++ I D A + + D G+
Sbjct: 218 YAKKYNVPLRVRSSFSDNPGTLITGEEEEIMEQPVVTGIAFDKDEAKVTVVGVPDKPGIA 277
Query: 199 AQVF 202
AQ+F
Sbjct: 278 AQIF 281
>gnl|CDD|184156 PRK13575, PRK13575, 3-dehydroquinate dehydratase; Provisional.
Length = 238
Score = 30.9 bits (70), Expect = 2.9
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 774 QVRNLDAIAQMVKQVVVPEFTPKSGVTIAVTDAQLQNSNGDYDQDRLGQLKNELPSIQEL 833
+ +D +A+M+ ++ V + + K VT LQ G + D L ++L +I +
Sbjct: 42 ENVTVDQLAEMITKLKVLQDSFKLLVTYRTK---LQGGYGQFTNDLYLNLLSDLANINGI 98
Query: 834 QGLHITPLEFEKDDDTNLHMDFIVAA 859
+ I E++ D D H I
Sbjct: 99 DMIDI---EWQADIDIEKHQRLITHL 121
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 29.3 bits (66), Expect = 8.5
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 129 NRAEVSHTNLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTN 169
+R +V+ T + V +A TG L A VLT
Sbjct: 39 DRTQVTDTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTA 79
>gnl|CDD|237272 PRK13017, PRK13017, dihydroxy-acid dehydratase; Provisional.
Length = 596
Score = 29.9 bits (68), Expect = 8.7
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 863 RAANYGITPADRHTSKLIAGKIIPAIATTTS 893
R NYG+T + L +GK I IA T S
Sbjct: 32 RYMNYGLTREE-----LQSGKPIIGIAQTGS 57
>gnl|CDD|237404 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional.
Length = 578
Score = 29.6 bits (67), Expect = 9.4
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 449 VAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGA 488
VAI F + E+L LK V+ GA GCE+ + FA G GA
Sbjct: 398 VAINRFPTDTDEELEWLKEAVLLTGAFGCEISEAFAQGGEGA 439
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 29.4 bits (67), Expect = 9.7
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 460 LGKLKYFVVGAGAIGCELLKNFAMMGV 486
G+L++ V G + E+L+ F +G+
Sbjct: 214 GGRLRFAVSGGAPLPPEVLEFFRALGI 240
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 50,234,555
Number of extensions: 5012116
Number of successful extensions: 4639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4544
Number of HSP's successfully gapped: 115
Length of query: 986
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 880
Effective length of database: 6,236,078
Effective search space: 5487748640
Effective search space used: 5487748640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.4 bits)