RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7300
(986 letters)
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 959 bits (2480), Expect = 0.0
Identities = 437/959 (45%), Positives = 625/959 (65%), Gaps = 39/959 (4%)
Query: 51 QDIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTAT 110
+IDE LYSRQLYVLG +AM +M +S+VLI GL GLGVEIAKNV+L+GVKS+T+ D
Sbjct: 3 GEIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPV 62
Query: 111 SLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTNS 170
L+DLS+QF+L+EKD+G+ R +V+ L++LN YV + +F+VVV T++
Sbjct: 63 QLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDVTQLSQFQVVVATDT 122
Query: 171 -TYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTTGENPVSVIIAGVTR 229
+ ++++ I++ H++ I I ++TRGLF F D G+ FTV+D TGE P + +++ +
Sbjct: 123 VSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVLDPTGEEPRTGMVSDIEP 182
Query: 230 EAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQLNGIEPRKVKVLGPYTFSIGDTTKFDEY 289
+G VT LD+ RHG EDG++V FSEV+G+ +LN KV+VLGP+ F IG ++ EY
Sbjct: 183 --DGTVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGSVKEYGEY 240
Query: 290 VSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFAKFESPANLHVAFSTLHNF-VKSFGY 348
GGI T+VK P+ + F L + L PEFV +DFAKF+ A LH+ F LH F V+ G
Sbjct: 241 KKGGIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGE 300
Query: 349 APKPWNSADADQFLALAKE-------SKLNNGELDEKLLQLFAKTAAGNCNPVNAVIGGI 401
P+ N DA++ + L + +++E L++ + A G+ V A GG+
Sbjct: 301 LPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGL 360
Query: 402 VAQEVMKACSGKFHPIFQWLYFDAVECI----DENIAETDAIVNGSRYEGQVAIFGKNFQ 457
VAQEV+KACSGKF P+ Q++YFD++E + + E SRY+ Q+A+FG +FQ
Sbjct: 361 VAQEVLKACSGKFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQ 420
Query: 458 EKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHD 517
+K+ K F+VG+GAIGCE+LKN+A++G+G+G G I VTD D IEKSNLNRQFLFRP D
Sbjct: 421 KKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKD 480
Query: 518 VQQPKSATAAKAIKVMNPNVNITY--HENRVGPETEKVYDDLFFESLDGIANALDNVEAR 575
V + KS AA+A+ MNP++ ++VGPETE++++D F+ESLD + NALDNV+AR
Sbjct: 481 VGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDAR 540
Query: 576 IYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSIPICTLKNFPNAI 635
Y+DRRCV+ RKPLLESGTLGTKGN+QV++P LTESYSSS+DPPEKSIP+CTL++FPN I
Sbjct: 541 TYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKI 600
Query: 636 EHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVMKLPGSQPLEMLENVKHALVDERPL 695
+HT+ WA+ F+G F SAEN YL PNFVE+ +K G +LE++ + +P
Sbjct: 601 DHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVK-GVLESI-SDSLSSKPH 658
Query: 696 NIKDCVAWARNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLH 755
N +DC+ WAR ++ ++N+ I+QLLFNFP + TS+G+PFWSG KR P PLEFD+ + H
Sbjct: 659 NFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDH 718
Query: 756 LQYIYTGANLKAELYGIPQ-----VRNLDAIAQMVKQVVVPEFTPKSGVTIAVTDAQLQ- 809
++ GA+L+A YGI N+D ++ +++PEFTP + + I V D
Sbjct: 719 FHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDP 778
Query: 810 NSNGDYDQDRLGQLKNELPSIQELQGLHITPLEFEKDDDTNLHMDFIVAASNLRAANYGI 869
N+N D + QL + LP L G + P++FEKDDDTN H++FI A SN RA NY I
Sbjct: 779 NANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFI 838
Query: 870 TPADRHTSKLIAGKIIPAIATTTSVVAGLVSKKKIEPHVRALVFELCCQDESGEDVETTI 929
ADR +K IAG+IIPAIATTTS+V GLV+ +E +++L E +
Sbjct: 839 ETADRQKTKFIAGRIIPAIATTTSLVTGLVN---LE------LYKLIDNKTDIEQYKNGF 889
Query: 930 V----AVVAYCWSKGAPKLKYYDVEW-TLWDRFEINQEMTLKQFLDYFQNEHKLEITIL 983
V + +PK +Y + ++ +WDRF+I ++ L +++F+ + LEIT+L
Sbjct: 890 VNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEITML 948
Score = 113 bits (284), Expect = 8e-26
Identities = 44/243 (18%), Positives = 82/243 (33%), Gaps = 16/243 (6%)
Query: 21 HKQLNNTTCETFNMESVANHQNGSSATAMDQDIDEGLYSRQLYVLGHDAMRRMASSDVLI 80
K F+ Y Q+ V G D +++A+S V +
Sbjct: 371 GKFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFL 430
Query: 81 SGLGGLGVEIAKNVILSGVKS-----VTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSH 135
G G +G E+ KN L G+ S + + D + S+L+ QF KDVG+N++EV+
Sbjct: 431 VGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAA 490
Query: 136 TNLSQLNPYVSTKAYTGEL----------SEAFIKKFRVVVLTNSTYDEQLAISQITHAN 185
+ +NP + K +++F + V D + + +
Sbjct: 491 EAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFY 550
Query: 186 DIALIIADTRGLFAQVFCDFGNNFTVVDTTGENPVSVIIAGVTREA-EGVVTCLDETRHG 244
L+ + T G ++ + P I R + + +
Sbjct: 551 RKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSL 610
Query: 245 FED 247
F+
Sbjct: 611 FQG 613
Score = 56.8 bits (136), Expect = 3e-08
Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 27/217 (12%)
Query: 737 SGPKRCPKPLEFDVTDPLHLQYIYTGANLKAELYGIPQVRNLDAIAQMVKQVVVPEFTPK 796
+G K P E D H+++I +N +A+ Y I + + +++ T
Sbjct: 803 AGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETA-DRQKTKFIAGRIIPAIATTT 861
Query: 797 SGVTIAVT------------DAQLQNSNGDYDQDRLGQLKNELPSIQELQGLHITPL--E 842
S VT V Q +N + G + E +
Sbjct: 862 SLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDR 921
Query: 843 FEKDDDTNLHMDFIVAASNLRAANYGIT-PADRHTSKLIAGKIIPAIATTT------SVV 895
F+ D L D I + G+ + L+ P + +
Sbjct: 922 FDIKGDIKLS-DLIEHFEK----DEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQL 976
Query: 896 AGLVSKKKIEPHVRALVFELCCQDESGEDVETTIVAV 932
LV+KK I HV ++ E+C D+ GEDVE + +
Sbjct: 977 VKLVTKKDIPAHVSTMILEICADDKEGEDVEVPFITI 1013
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 435 bits (1120), Expect = e-141
Identities = 116/532 (21%), Positives = 193/532 (36%), Gaps = 67/532 (12%)
Query: 449 VAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLN 508
+ E + + VVGAG IGCELLKN + G I + D+D I+ SNLN
Sbjct: 4 SRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLN 58
Query: 509 RQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANA 568
RQFLF+ V + K+ A +++ P NI + + + Y+ FF + NA
Sbjct: 59 RQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPD---YNVEFFRQFILVMNA 115
Query: 569 LDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSIPICTL 628
LDN AR +++R C+ + PL+ESGT G G + +TE Y P +++ P T+
Sbjct: 116 LDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATI 175
Query: 629 KNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVMKLPGSQPLEMLENVKHA 688
+N P+ H + WA+ F +F + + + +
Sbjct: 176 RNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDI 235
Query: 689 LVDERPLNIKDCVAWARNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEF 748
K + + + IR LL + W ++ P PL++
Sbjct: 236 KRISTKEWAKSTGYDPVKLFTKLFKDDIRYLL----------TMDKLWR-KRKPPVPLDW 284
Query: 749 DVTDPLHLQYIYTGANLKAELYGIPQVRNLDAIAQMVKQVVVPEFTPKSGVTIAVTDAQL 808
++++ + +K V +
Sbjct: 285 A--------------EVQSQGEETNASDQQNEPQLGLKDQQVLDV--------------- 315
Query: 809 QNSNGDYDQDRLGQLKNELPSIQELQGLHITPLEFEKDDDTNLHMDFIVAASNLRAANYG 868
S + L+ L L ++KDD + MDF+ +A+NLR +
Sbjct: 316 -KSYARLFSKSIETLRVHLAE-----KGDGAELIWDKDDPS--AMDFVTSAANLRMHIFS 367
Query: 869 ITPADRHTSKLIAGKIIPAIATTTSVVAGLVSK---KKIEPHVRALVFELCCQDESGEDV 925
+ R K +AG IIPAIATT +V+AGL+ K + + + +
Sbjct: 368 MNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKK 427
Query: 926 ETTIVAVVAYCWSKGAPKLKYYDVEWTLWDRFEIN-QEMTLKQFLDYFQNEH 976
A+ P Y +N ++T+ D E
Sbjct: 428 LLVPCALD-------PPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEK 472
Score = 75.2 bits (184), Expect = 6e-14
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 62 LYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYL 121
L + +A VL+ G GG+G E+ KN++L+G + L D +S+L+ QF
Sbjct: 4 SRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLF 63
Query: 122 SEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSEA-----FIKKFRVVV 166
+K VGR++A+V+ ++ Q P + AY + F ++F +V+
Sbjct: 64 QKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVM 113
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 350 bits (900), Expect = e-113
Identities = 99/381 (25%), Positives = 154/381 (40%), Gaps = 61/381 (16%)
Query: 52 DIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATS 111
+ + Y RQ+ + G +A +R+ +S VL+ GL GLG EIAKN+IL+GVK +T+ D +
Sbjct: 13 EEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVT 72
Query: 112 LSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE---AFIKKFRVVVLT 168
D +QF + VGRNRAE S LNP V K T ++ + +F +F V LT
Sbjct: 73 PEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLT 132
Query: 169 NSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTTGENPVSVIIAGVT 228
+ D + + QI H N I D G F + G + V +
Sbjct: 133 CCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEE--------------- 177
Query: 229 REAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQLNGIEPRKVKVLGPYTFSIGDTTKFDE 288
T + + G EDG +++ E VK
Sbjct: 178 ------KTKVAKVSQGVEDGPDTKRAKLDSS------ETTMVK----------------- 208
Query: 289 YVSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFAKFESPANLHVAFSTLHNFVKSFGY 348
K + F P+ EAL+ A + + + L F G
Sbjct: 209 -------------KKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGR 255
Query: 349 APKPWNS-ADADQFLALAKESKLNNGELDEKLLQLFAKTAAGNCNPVNAVIGGIVAQEVM 407
P D++ L + + + G + L + F + PV AV+GGI+AQE++
Sbjct: 256 DPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIV 315
Query: 408 KACSGKFHPIFQWLYFDAVEC 428
KA S + P + +FD ++
Sbjct: 316 KALSQRDPPHNNFFFFDGMKG 336
Score = 109 bits (274), Expect = 5e-26
Identities = 30/157 (19%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 443 SRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLI 502
++Y+ Q+ ++G Q++L + +VG +G E+ KN + GV + + D + +
Sbjct: 17 AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKG-----LTMLDHEQV 71
Query: 503 EKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESL 562
+ QFL R V + ++ + + + +NP V++ + + E FF
Sbjct: 72 TPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPES-----FFTQF 126
Query: 563 DGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKG 599
D + + + + +D+ C + G G
Sbjct: 127 DAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHG 163
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine
half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Length = 276
Score = 340 bits (872), Expect = e-110
Identities = 169/274 (61%), Positives = 204/274 (74%)
Query: 612 YSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVM 671
+ EKSIPICTLKNFPNAIEHTLQWARD FEG+F+Q AEN +YL D FVER +
Sbjct: 3 HHHHHHEFEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTL 62
Query: 672 KLPGSQPLEMLENVKHALVDERPLNIKDCVAWARNHWQDQYNNQIRQLLFNFPPEQVTSS 731
+L G+QPLE+LE V+ +LV +RP DCV WA +HW QY N IRQLL NFPP+Q+TSS
Sbjct: 63 RLAGTQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSS 122
Query: 732 GQPFWSGPKRCPKPLEFDVTDPLHLQYIYTGANLKAELYGIPQVRNLDAIAQMVKQVVVP 791
G PFWSGPKRCP PL FDV + LHL Y+ ANL A+ YG+ ++ A+A +++ V VP
Sbjct: 123 GAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSVQVP 182
Query: 792 EFTPKSGVTIAVTDAQLQNSNGDYDQDRLGQLKNELPSIQELQGLHITPLEFEKDDDTNL 851
EFTPKSGV I V+D +LQ++N D RL +LK LPS +L G + P++FEKDDD+N
Sbjct: 183 EFTPKSGVKIHVSDQELQSANASVDDSRLEELKATLPSPDKLPGFKMYPIDFEKDDDSNF 242
Query: 852 HMDFIVAASNLRAANYGITPADRHTSKLIAGKII 885
HMDFIVAASNLRA NY I+PADRH SKLIAGKII
Sbjct: 243 HMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 316 bits (810), Expect = 2e-94
Identities = 89/377 (23%), Positives = 152/377 (40%), Gaps = 41/377 (10%)
Query: 318 FVMTDFAKFESPANLHVA-FSTLHNFVKSFGYAPKPWNSADADQFLALAKESKLNNGELD 376
+ + + A + + +++ A+A +S D
Sbjct: 268 AGINAASPNKELAKEFLENYLLTDEGLEAV---------NKDKPLGAVALKSYEEELAKD 318
Query: 377 EKLLQLFAKTAAGNCNPVNAVIGGI---VAQEVMKACSGKFHPIFQWLYFDAVECIDENI 433
++ G P + V V+ A SG+ D
Sbjct: 319 PRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAADWEG 378
Query: 434 ----AETDAIVNGSRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAG 489
+ +G ++ Q L K V+GAG +GCELLKN A+ G
Sbjct: 379 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-- 436
Query: 490 PGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPE 549
QI V DMD I+ SNLNRQFLFRP D+ +PK+ AA+ + PN N+ H N++
Sbjct: 437 ---QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD- 492
Query: 550 TEKVYDDLFFESLDGIANALDNVEARIYMDRRCVY------------SRKPLLESGTLGT 597
++D F+ I LD++ AR +++ + S PL++ GT G
Sbjct: 493 ----FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGF 548
Query: 598 KGNSQVVVPHLTESYSSSQD--PPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSAE 655
KGN++V++P +T + + PP+ + P+CT+ + P EH +++ R + E
Sbjct: 549 KGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGE 608
Query: 656 NAAEYLEDPNFVERVMK 672
+DP ++ + +
Sbjct: 609 GVPLDGDDPEHIQWIFQ 625
Score = 108 bits (270), Expect = 5e-24
Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 8/153 (5%)
Query: 829 SIQELQGLHITPLEFEKDDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAI 888
+ + D D H+ +I S RA+ Y I ++ + +IIPA+
Sbjct: 596 RMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAV 655
Query: 889 ATTTSVVAGLVSKKKIEPHVRALVFELCCQDESGEDVETTIVAVVAYCWSKGAPKLKYYD 948
A+T +V+A + + + Y ++ A + +
Sbjct: 656 ASTNAVIAAVCA-------TEVFKIATSAYIPL-NNYLVFNDVDGLYTYTFEAERKENCP 707
Query: 949 VEWTLWDRFEINQEMTLKQFLDYFQNEHKLEIT 981
L + + L++ LDY N L++
Sbjct: 708 ACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMK 740
Score = 68.0 bits (166), Expect = 1e-11
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 4/149 (2%)
Query: 22 KQLNNTTCETFNMESVANHQNGSSATAMDQDIDEGLYSRQLYVLGHDAM-RRMASSDVLI 80
+ + A G G ++ + +++ + + VL+
Sbjct: 357 GRQTVDAALAAAQTNAAADWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLV 416
Query: 81 SGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQ 140
G GGLG E+ KN+ LSG + + + D +S+L+ QF KD+GR +AEV+ L+
Sbjct: 417 IGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLND 476
Query: 141 LNPYVSTKAYTG---ELSEAFIKKFRVVV 166
P + + + ++ F ++F ++V
Sbjct: 477 RVPNCNVVPHFNKIQDFNDTFYRQFHIIV 505
Score = 31.4 bits (71), Expect = 2.0
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 27/82 (32%)
Query: 694 PLNIKDCVAWARNHWQDQYNNQIRQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDP 753
P + C+ + R W + + + D DP
Sbjct: 585 PRLPEHCIEYVRML---------------------------QWPKEQPFGEGVPLDGDDP 617
Query: 754 LHLQYIYTGANLKAELYGIPQV 775
H+Q+I+ + +A Y I V
Sbjct: 618 EHIQWIFQKSLERASQYNIRGV 639
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 299 bits (766), Expect = 3e-92
Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 24/245 (9%)
Query: 442 GSRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
G ++ Q L K V+GAG +GCELLKN A+ G QI V DMD
Sbjct: 20 GPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDT 74
Query: 502 IEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFES 561
I+ SNLNRQFLFRP D+ +PK+ AA+ + PN N+ H N++ ++D F+
Sbjct: 75 IDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD-----FNDTFYRQ 129
Query: 562 LDGIANALDNVEARIYMDRRCVYSRK------------PLLESGTLGTKGNSQVVVPHLT 609
I LD++ AR +++ + PL++ GT G KGN++V++P +T
Sbjct: 130 FHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMT 189
Query: 610 ESYSSSQD--PPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFV 667
+ + PP+ + P+CT+ + P EH +++ R + E +DP +
Sbjct: 190 ACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHI 249
Query: 668 ERVMK 672
+ + +
Sbjct: 250 QWIFQ 254
Score = 99 bits (249), Expect = 3e-22
Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 8/140 (5%)
Query: 842 EFEKDDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVSK 901
D D H+ +I S RA+ Y I ++ + +IIPA+A+T +V+A + +
Sbjct: 238 GVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCAT 297
Query: 902 KKIEPHVRALVFELCCQDESGEDVETTIVAVVAYCWSKGAPKLKYYDVEWTLWDRFEINQ 961
+ + + + V + + Y A + + L + +
Sbjct: 298 EVFK------IATSAYIPLNNYLVFNDVDGLYTYT--FEAERKENCPACSQLPQNIQFSP 349
Query: 962 EMTLKQFLDYFQNEHKLEIT 981
L++ LDY N L++
Sbjct: 350 SAKLQEVLDYLTNSASLQMK 369
Score = 71.9 bits (176), Expect = 3e-13
Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 56 GLYSRQLYVLGHDAM-RRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSD 114
G ++ + +++ + + VL+ G GGLG E+ KN+ LSG + + + D +S+
Sbjct: 20 GPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSN 79
Query: 115 LSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE---AFIKKFRVVV 166
L+ QF KD+GR +AEV+ L+ P + + ++ + F ++F ++V
Sbjct: 80 LNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 224 bits (571), Expect = 9e-64
Identities = 70/411 (17%), Positives = 126/411 (30%), Gaps = 56/411 (13%)
Query: 44 SSATAMDQDIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVT 103
S + + + E Y RQL + G + S+ V + G EI KN++L G+ S T
Sbjct: 1 GSMAQLGKLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFT 60
Query: 104 LHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE------A 157
+ D S D + F+L +G+NRAE + L +LN VS +
Sbjct: 61 IIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 120
Query: 158 FIKKFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTTGE 217
F +F VVV T L ++ + + I L+I T GL + + +
Sbjct: 121 FFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDN 180
Query: 218 NPVSVIIAGVTREAEGVVTC-----LDETRHGFEDGDYVTFSEVQGMTQLNGIEPRKV-- 270
+ + E +++ H + + K
Sbjct: 181 ALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYK 240
Query: 271 ------KVLGPYTFSIGDTTKFDEYVSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFA 324
++ D F+E + + T + +I P +++ + D
Sbjct: 241 EKEDFRDLIRQGILKPEDEENFEEAIK-NVNTALNTTQI------PSSIED---IFNDDR 290
Query: 325 KF---ESPANLHVAFSTLHNFVKSFGYAPKP------------------------WNSAD 357
+ + + L FV G P D
Sbjct: 291 CINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKD 350
Query: 358 ADQFLALAKESKLNNGELDEKLLQLFAKTAAGNCNPVNAVIGGIVAQEVMK 408
A + + G+ E + + K N + V +A+E
Sbjct: 351 AAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGL 401
Score = 187 bits (476), Expect = 5e-51
Identities = 71/532 (13%), Positives = 162/532 (30%), Gaps = 64/532 (12%)
Query: 432 NIAETDAIVNGSRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPG 491
++A+ ++ +Y+ Q+ ++G + QE L ++ A A G E+LKN + G+G+
Sbjct: 2 SMAQLGKLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGS--- 58
Query: 492 GQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETE 551
+ D + + + F + + + ++ A + ++ +N +V+ ++ E +
Sbjct: 59 --FTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLD 116
Query: 552 KVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTES 611
D FF + + + S+ PLL T G G ++++
Sbjct: 117 N--DPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVI 174
Query: 612 YSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQ---SAENAAEYLEDPNFVE 668
S P + K FP EH + D+ E A+YL + E
Sbjct: 175 ES---HPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQ-WYSE 230
Query: 669 RVMKLPGS--QPLEMLENVKHA-LVDERPLNIKDCVAWARNHWQDQ-YNNQIRQLLFNFP 724
++P + + + + ++ L E N ++ + + I + +
Sbjct: 231 TNGRIPKTYKEKEDFRDLIRQGILKPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDR 290
Query: 725 PEQVTSSGQPFW------------SGPKRCPKPLEFDVTDPLHLQYI------------- 759
+T FW G P +YI
Sbjct: 291 CINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKD 350
Query: 760 -----YTGANLKAELYGIPQVRNLDAIAQMVK---QVVVPEFTPKSGVTIAVTDAQLQNS 811
A L + P+ + + + + V + T + +
Sbjct: 351 AAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEII 410
Query: 812 NGDYDQDRLGQLKNELPSIQELQGLH---ITPLEFEKDDDTNLHMDFIVAASNLRAANYG 868
+ + D L L ++ ++ ++D + +
Sbjct: 411 SSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVM 470
Query: 869 ITPADRHTSKLIAGKIIPAIATTTSVVAGLVSK-------KKIEPHVRALVF 913
+ H IA + + G ++ K+ ++
Sbjct: 471 VKDDYVHEFCRYGAAEPHTIA---AFLGGAAAQEVIKIITKQFVIFNNTYIY 519
Score = 127 bits (321), Expect = 6e-31
Identities = 32/229 (13%), Positives = 65/229 (28%), Gaps = 20/229 (8%)
Query: 207 NNFTVVDTTGENPVSVIIAGVTREAEGVVTCLDETRHGFEDGDYVTFSE-VQGMTQLNGI 265
F + G PV I + ++ + L D V + Q G
Sbjct: 309 KEFVAKEGQGNLPVRGTIPDMIADSGKYIK-LQNVYREKAKKDAAAVGNHVAKLLQSIGQ 367
Query: 266 EPRKVKVLGPYTFSIGDTTKFDEYVSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFAK 325
P + + F V + + + ++ P+
Sbjct: 368 APESISEKELKLLC--SNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPD-------- 417
Query: 326 FESPANLHVAFSTLHNFVKSFGYAPKPWNSADADQFLALAK------ESKLNNGELDEKL 379
+ L++ + F K G P N + L + + + +
Sbjct: 418 --NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDY 475
Query: 380 LQLFAKTAAGNCNPVNAVIGGIVAQEVMKACSGKFHPIFQWLYFDAVEC 428
+ F + A + + A +GG AQEV+K + +F + +
Sbjct: 476 VHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQ 524
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation,
catalytic domain, heteronuclear first catalytic cysteine
half-domain, E1 protein; NMR {Mus musculus}
Length = 112
Score = 174 bits (443), Expect = 3e-51
Identities = 63/112 (56%), Positives = 84/112 (75%)
Query: 204 DFGNNFTVVDTTGENPVSVIIAGVTREAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQLN 263
+FG + D+ GE P+S +++ VT++ GVVTCLDE RHGFE GD+V+FSEVQGM QLN
Sbjct: 1 EFGEEMVLTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSFSEVQGMIQLN 60
Query: 264 GIEPRKVKVLGPYTFSIGDTTKFDEYVSGGIATQVKQPKILKFLPLPEALQQ 315
G +P ++KVLGPYTFSI DT+ F +Y+ GGI +QVK PK + F LP +L +
Sbjct: 61 GCQPMEIKVLGPYTFSICDTSNFSDYIRGGIVSQVKVPKKISFKSLPASLVE 112
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 94.7 bits (236), Expect = 2e-21
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 20/148 (13%)
Query: 457 QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPH 516
EK+ +VG G +G + G+G ++ + D D +E +N+NR F+PH
Sbjct: 31 YEKIRTFAVAIVGVGGVGSVTAEMLTRCGIG-----KLLLFDYDKVELANMNRL-FFQPH 84
Query: 517 DVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANAL------- 569
K A ++ +NP+V H + T F + +
Sbjct: 85 QAGLSKVQAAEHTLRNINPDVLFEVHNYNI---TTVENFQHFMDRISNGGLEEGKPVDLV 141
Query: 570 ----DNVEARIYMDRRCVYSRKPLLESG 593
DN EAR+ ++ C + +ESG
Sbjct: 142 LSCVDNFEARMTINTACNELGQTWMESG 169
Score = 48.4 bits (116), Expect = 5e-06
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 71 RRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQFYLSEKDVGRNR 130
++ + V I G+GG+G A+ + G+ + L D L++++ F+ G ++
Sbjct: 32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFF-QPHQAGLSK 90
Query: 131 AEVSHTNLSQLNPYVSTKAYTGELSEA 157
+ + L +NP V + + ++
Sbjct: 91 VQAAEHTLRNINPDVLFEVHNYNITTV 117
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 91.8 bits (229), Expect = 9e-21
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 444 RYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
RY Q+ + + Q+KL + ++G G +G A GVG + + D D
Sbjct: 8 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVG-----TLVLADDDD 62
Query: 502 IEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFES 561
+ SNL RQ LF D+ +PKS + + + +NP++ +T + R+ E D
Sbjct: 63 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEA---LKDA-VAR 118
Query: 562 LDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVV 605
D + + DN+ R ++ CV PL+ + +G G Q++V
Sbjct: 119 ADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGG--QLMV 160
Score = 58.7 bits (143), Expect = 1e-09
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 58 YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
YSRQ+ + + D +++ S VLI GLGGLG A + +GV ++ L D LS+L
Sbjct: 9 YSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNL 68
Query: 116 SSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVV 166
Q + +D+ R +++VS L+QLNP + A L+ + + VV+
Sbjct: 69 QRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVL 123
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann
fold, (2) Cys-X-X-Cys zinc-binding M MOAD:
ubiquitin-like fold; 1.70A {Escherichia coli} SCOP:
c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Length = 249
Score = 91.0 bits (227), Expect = 2e-20
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 444 RYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
RY Q+ + F + QE L + +VG G +GC + A GVG + + D D
Sbjct: 11 RYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVG-----NLTLLDFDT 65
Query: 502 IEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFES 561
+ SNL RQ L V QPK +A A+ +NP++ IT + L
Sbjct: 66 VSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAE---LAAL-IAE 121
Query: 562 LDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVV 605
D + + DNV R ++ C ++ PL+ + +G Q+ V
Sbjct: 122 HDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEG--QITV 163
Score = 56.7 bits (138), Expect = 7e-09
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 58 YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
Y+RQ+ + D + S VLI GLGGLG ++ + +GV ++TL D SLS+L
Sbjct: 12 YNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNL 71
Query: 116 SSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVV 166
Q S+ VG+ + E + L+++NP+++ L + A I + +V+
Sbjct: 72 QRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVL 126
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 93.2 bits (232), Expect = 2e-20
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 28/187 (14%)
Query: 457 QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPH 516
Q+KL K ++G G IG + A G+G +I + D D IE +NL RQ LF
Sbjct: 113 QDKLKNAKVVILGCGGIGNHVSVILATSGIG-----EIILIDNDQIENTNLTRQVLFSED 167
Query: 517 DVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANALDN-VEAR 575
DV + K+ + + N ++++ + T D D + D+
Sbjct: 168 DVGKNKTEVIKRELLKRNSEISVSEIALNINDYT----DLHKVPEADIWVVSADHPFNLI 223
Query: 576 IYMDRRCVYSRKPLLESGTLGTKGNSQVVV----------------PHLTESYSSSQDPP 619
++++ CV + +P + +G + L S + D
Sbjct: 224 NWVNKYCVRANQPYINAGYVNDIA--VFGPLYVPGKTGCYECQKVVADLYGSEKENIDHK 281
Query: 620 EKSIPIC 626
K I
Sbjct: 282 IKLINSR 288
Score = 59.3 bits (144), Expect = 2e-09
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 58 YSRQL------YVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATS 111
YSR ++ ++ V+I G GG+G ++ + SG+ + L D
Sbjct: 95 YSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIE 154
Query: 112 LSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE----AFIKKFRVVV 166
++L+ Q SE DVG+N+ EV L + N +S +++ + + + V
Sbjct: 155 NTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWV 213
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 92.4 bits (230), Expect = 3e-20
Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 19/174 (10%)
Query: 457 QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPH 516
+ + K ++GAG +GC + + GV +I D + SN RQ L+
Sbjct: 29 LDIIKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFE 83
Query: 517 DVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANAL------- 569
D +PK+ AA ++K + P ++ T + + K+ ++ AL
Sbjct: 84 DCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDII 143
Query: 570 ----DNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPP 619
D+ E+R K ++ + LG +V+ H SS+
Sbjct: 144 FLLVDSRESRWLPSLLSNIENKTVI-NAALGFDS--YLVMRHGNRDEQSSKQLG 194
Score = 58.1 bits (141), Expect = 4e-09
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 49 MDQDIDEGL-YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLH 105
DQ +D L + + L + + ++ VL+ G G LG +++ +I GV+ +T
Sbjct: 8 ADQSVDLNLKLMKWRILPDLN---LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFV 64
Query: 106 DTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL 154
D S S+ Q + +D G+ +AE++ +L ++ P + +
Sbjct: 65 DNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSI 113
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 94.9 bits (236), Expect = 4e-20
Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 19/174 (10%)
Query: 457 QEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPH 516
+ + K ++GAG +GC + + GV +I D + SN RQ L+
Sbjct: 322 LDIIKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFE 376
Query: 517 DVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLF-----------FESLDGI 565
D +PK+ AA ++K + P ++ T + + K+ ++ + D I
Sbjct: 377 DCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDII 436
Query: 566 ANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPP 619
+D+ E+R K ++ + LG +V+ H SS+
Sbjct: 437 FLLVDSRESRWLPSLLSNIENKTVI-NAALGFDS--YLVMRHGNRDEQSSKQLG 487
Score = 65.2 bits (159), Expect = 6e-11
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 44 SSATAMDQDIDEGL-YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSV 102
DQ +D L + +L + + ++ VL+ G G LG +++ +I GV+ +
Sbjct: 296 DPLKIADQSVDLNLKLMKWR-ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKI 354
Query: 103 TLHDTTATSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAY 150
T D S S+ Q + +D G+ +AE++ +L ++ P +
Sbjct: 355 TFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 402
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.9 bits (196), Expect = 3e-15
Identities = 90/653 (13%), Positives = 191/653 (29%), Gaps = 195/653 (29%)
Query: 333 HVAFST----------LHNFVKSFGYAPKPWNSADADQFL--ALAKESK---LNNGELDE 377
H+ F T L F +F ++ D L+KE + + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 378 KLLQLFAKTAAGNCNPVNAVIGGIVAQEVMKACSGKFHPIFQWLYFD-AVECIDENIAET 436
L+LF + V + ++ +++L E ++
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRIN------------YKFLMSPIKTEQRQPSMMTR 110
Query: 437 DAIVNGSRYEGQVAIFGKNF----------QEKLGKLK--YFVVGAGAIGC-------EL 477
I R +F K ++ L +L+ V+ G +G ++
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 478 LKNFAMMGVGAGPGGQIF-------VTDMDLIEK-SNLNRQFLFRPHDVQQPKSATAAKA 529
++ V +IF + ++E L Q P+ + ++
Sbjct: 171 CLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSS---- 221
Query: 530 IKVMNPNVNITYHENRVGPETEKVYDDLFFE-----SLDGIANALDNV-EARI--YMDRR 581
NI + + L L + L NV A+ +
Sbjct: 222 --------NIKLRIH----SIQAELRRLLKSKPYENCLL-V---LLNVQNAKAWNAFNLS 265
Query: 582 C---VYSR-KPLLESGTLGTKGNSQVVVPH----LTESYS----------SSQD-PPE-- 620
C + +R K + + L + + + H LT QD P E
Sbjct: 266 CKILLTTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 621 KSIPIC------TLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVM--- 671
+ P ++++ ++ D I S F +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 672 --KLPGSQPLEML--------------ENVKHALVDERP----LNIKDCVAWARNHWQDQ 711
+P + L ++ + K++LV+++P ++I + +++
Sbjct: 384 SAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 712 YNNQI-RQLLFNFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLHL-QYIYT--GANLK- 766
Y + R ++ + PK + D P +L QY Y+ G +LK
Sbjct: 443 Y--ALHRSIV-----DHY------------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 767 AELYG----IPQV-RNLDAIAQMVKQVVVPEFTPKSGVTIAVTD-----AQLQNSNGDYD 816
E V + + Q ++ + + + +++ Y+
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNTLQQLKFYKPYICDNDPKYE 542
Query: 817 QDRLGQLKNELPSIQELQGLHITPLEFEKDDDTNLHMDFIVAASNLRAANYGI 869
+ + + + LP I+E L + + D + A L A + I
Sbjct: 543 R-LVNAILDFLPKIEE--NLICSK-----------YTDLLRIA--LMAEDEAI 579
Score = 64.9 bits (157), Expect = 1e-10
Identities = 89/608 (14%), Positives = 170/608 (27%), Gaps = 175/608 (28%)
Query: 2 PAKKRRVDCELEVEVEEEEHKQLNNTTCETFNMESVANHQNGSSATAMDQDIDEGLYSRQ 61
P K + + + E+ +L N + F +V+ Q + + L
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQ-------PYLKLRQALLE-- 146
Query: 62 LYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDLSSQ--- 118
+R + +VLI G+ G G K+ + Q
Sbjct: 147 --------LRP--AKNVLIDGVLGSG------------KTW-V---ALDVCLSYKVQCKM 180
Query: 119 ----FYLSEKDVGR-NRAEVSHTNLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTNSTYD 173
F+L+ + N E L +L Y +T + K R +S
Sbjct: 181 DFKIFWLN---LKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLR----IHSIQA 232
Query: 174 E-QLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTTGENPVSVIIAGVTREAE 232
E + + + N + L++ + + A+ + F + ++ TT V+ ++ T
Sbjct: 233 ELRRLLKSKPYENCL-LVLLNVQN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATT--- 286
Query: 233 GVVTCLDETRHGFEDGDYVT-FSEVQGM--TQLNGIEPRKVKVLGPYTFSIGDTTKFDEY 289
LD + + + L PR+V P SI E
Sbjct: 287 -THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREVLTTNPRRLSI-----IAES 336
Query: 290 VSGGIAT-----QVKQPKILKFL-----PLPEALQQPEFVMTDFAKFESPANLHVAFSTL 339
+ G+AT V K+ + L A + F + F P + H+ L
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--RLSVF--PPSAHIPTILL 392
Query: 340 HNFVKSFGYAPKPWNSADADQFLALAKESKLNNGELDEKLLQLFAKTAAGNCNPVNAVIG 399
W ++ K + P + I
Sbjct: 393 SLI----------WFDVIK---------------SDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 400 GIVAQEVMKACSGKFHPIFQWLYFDAVECIDENIAETDAIVNGSRYEGQVAIFGKNF-QE 458
+Y + ++ A +IV+ Y K F +
Sbjct: 428 --------------IPS----IYLELKVKLENEYALHRSIVD--HYN-----IPKTFDSD 462
Query: 459 KLGKLK-----YFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEK--------- 504
L Y +G E + + +F+ D +E+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-------RMVFL-DFRFLEQKIRHDSTAW 514
Query: 505 ------SNLNRQF-LFRPH-DVQQPKSATAAKAIK--VMNPNVNITYHEN----RVG--P 548
N +Q ++P+ PK AI + N+ + R+
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 549 ETEKVYDD 556
E E ++++
Sbjct: 575 EDEAIFEE 582
Score = 29.8 bits (66), Expect = 5.5
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 21/91 (23%)
Query: 902 KKIEPHVR-ALVFELCCQDESGEDVETTIV--AVVAYCWSKGAPKLKYYDVEWTLWDRFE 958
K I A V C+D +D+ +I+ + + + WTL
Sbjct: 19 KDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL----L 72
Query: 959 INQEMTLKQFL------DY------FQNEHK 977
QE +++F+ +Y + E +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 1e-10
Identities = 105/637 (16%), Positives = 176/637 (27%), Gaps = 230/637 (36%)
Query: 326 FESPANLHVAFSTLH-NFVKSFGYAPKPWNSADAD-----------QFLA-LAKE-SKLN 371
P S L F K P+P AD +FL ++
Sbjct: 20 LLVPTASFFIASQLQEQFNKIL---PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 372 NGELDEKL---LQLFAKTAAGNCNPVNAVIGGIVAQEVMKACSGKFHPIFQWLYFDAVEC 428
G+ D+ L L F N ++A+ ++ + K + + Y A
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEG-NDIHALAAKLLQEN--DTTLVKTKELIK-NYITARIM 132
Query: 429 IDENI--AETDAIVNGSRYEGQV---AIFG------KNFQEKLGKLKY---------FVV 468
A+ EG AIFG F+E L L Y +
Sbjct: 133 AKRPFDKKSNSALFRAVG-EGNAQLVAIFGGQGNTDDYFEE-LRDL-YQTYHVLVGDLIK 189
Query: 469 GAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKS---AT 525
+ E L + A +F ++++ ++L P + P +
Sbjct: 190 FSA----ETLSELIRTTLDAEK---VFTQGLNIL-------EWLENPSN--TPDKDYLLS 233
Query: 526 AAKAIKVMNP--------NVNITYHENRVGPETEKVYDDLFFESLDG------------- 564
+ P + +T P L G
Sbjct: 234 IPISC----PLIGVIQLAHYVVTAKLLGFTPGE-------LRSYLKGATGHSQGLVTAVA 282
Query: 565 IA----------NALDNVEARIYMDRRC--VYSRKPL--------LESGT------LGTK 598
IA + + ++ RC Y L LE+ L
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 599 GNSQVVV-PHLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSAENA 657
+Q V ++ + ++S P K + I +L N
Sbjct: 343 NLTQEQVQDYVNK--TNSHLPAGKQVEI-SLVNGAK------------------------ 375
Query: 658 AEYLEDPNFVERVMKLPGSQPLEMLENVKHALVDERPLNIKDCVAWARNHWQDQYNNQI- 716
N V + G P + L + L R K A + DQ ++I
Sbjct: 376 -------NLV-----VSG--PPQSLYGLNLTL---R--KAK-----APSG-LDQ--SRIP 408
Query: 717 ---RQLLF--NFPPEQVTSSGQPFWSGPKRCPKPLEFDVTDPLHLQYIYTGANLKAELYG 771
R+L F F P V S PF S L +D ++ + + A+
Sbjct: 409 FSERKLKFSNRFLP--VAS---PFHS-------HLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 772 IPQ--------VRNLDA--IAQMVKQVVV-P---EFTPKSGVTIAVTDAQLQNSNGDYDQ 817
IP +R L ++V ++ P E T + T + D+
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL----------DFGP 506
Query: 818 D---RLGQLKNELPSIQELQGLHI---TPLEFEKDDD 848
LG L + ++ G+ + L+ DDD
Sbjct: 507 GGASGLGVLTHR---NKDGTGVRVIVAGTLDINPDDD 540
Score = 58.1 bits (140), Expect = 1e-08
Identities = 100/655 (15%), Positives = 179/655 (27%), Gaps = 259/655 (39%)
Query: 110 TSLSDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSEAFIKKFRVVVLTN 169
L++ + + L D+ H ++L T +K ++
Sbjct: 86 LCLTEFENCY-LEGNDI--------HALAAKLLQENDTTL---------VKTKELI---- 123
Query: 170 STYDEQLAISQ--ITHANDIALIIADTRG---LFAQVFCDFGNNFTVVDTTGENPVSVII 224
Y +++ ++ AL A G L A FG G+
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI----FG---------GQ------- 163
Query: 225 AGVTREAEGVVTCLDETRHGFEDGDYVTFSE--VQGMTQLNGIEPRKVKVLGPYTFSIGD 282
G T + +E R ++ Y ++ + L + D
Sbjct: 164 -GNTDD------YFEELRDLYQT--YHVLVGDLIKFSAET----------LSELIRTTLD 204
Query: 283 TTKFDEYVSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFAKFESPANLHVAFSTLHNF 342
K + + G+ IL++L P P+ D+ L + S
Sbjct: 205 AEKV--F-TQGL-------NILEWLENPS--NTPD---KDYL-------LSIPISCPLIG 242
Query: 343 VKSFGYAPKPWNSADADQFLALAKESKLNNGELDEKLLQLFAKTAAGNCNPVNAVIGGIV 402
V ++ AK GEL L K A G G+V
Sbjct: 243 VIQLA------------HYVVTAKLLGFTPGELRSYL-----KGATG-------HSQGLV 278
Query: 403 -AQEVMKACSGK-FHPIF----QWLYFDAVEC--------IDENIAETDAIVNGSRYEGQ 448
A + + S + F L+F V C + +I E D++ N EG
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-DSLENN---EGV 334
Query: 449 VAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLN 508
+ M+ + Q+ D + K+N
Sbjct: 335 PS-------------------------------PMLSISNLTQEQVQ----DYVNKTN-- 357
Query: 509 RQFLFRPHDVQQPKSATAAKAIKVMN-P-NVNITYHENRVGPETEKVYDDLFFESLDGIA 566
L V I ++N N+ ++ GP +SL G+
Sbjct: 358 -SHLPAGKQV----------EISLVNGAKNLVVS------GPP----------QSLYGLN 390
Query: 567 NALDNVEARIYMDR-RCVYS-RKPLLESGTLGTKGNSQVVVP-H---LTESYSS-SQDPP 619
L +A +D+ R +S RK + L V P H L + ++D
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFL------PVASPFHSHLLVPASDLINKDLV 444
Query: 620 EKSIPI--CTLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVMKLPGSQ 677
+ ++ ++ P + T D R + + +E
Sbjct: 445 KNNVSFNAKDIQ-IP--VYDTFDG-SD-----LRVLSGSISE------------------ 477
Query: 678 PLEMLENVKHALVDERPLNIKDCVAWARNHWQDQYNNQIRQLLFNFPPEQVTSSG 732
I DC+ W+ + +L +F P + G
Sbjct: 478 ------------------RIVDCIIRLPVKWETTTQFKATHIL-DFGPGGASGLG 513
Score = 57.8 bits (139), Expect = 2e-08
Identities = 83/510 (16%), Positives = 163/510 (31%), Gaps = 178/510 (34%)
Query: 476 ELLKNFAMMGVGAGPGGQIFVTDMDLIEKSN--------------LNRQFLFRPHDV--- 518
EL+ F +G +V+ L+E S +L +D+
Sbjct: 59 ELVGKF--LG---------YVSS--LVEPSKVGQFDQVLNLCLTEFENCYL-EGNDIHAL 104
Query: 519 ----QQPKSATAAKAIKVMNPNVNITYHENRV--GPETEKVYDDLFFESL-DGIANALDN 571
Q T K +++ Y R+ +K + F ++ +G
Sbjct: 105 AAKLLQENDTTLVKTKELIK-----NYITARIMAKRPFDKKSNSALFRAVGEG------- 152
Query: 572 VEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSIPICTLKNF 631
A++ G +GN+ L + Y + + + +
Sbjct: 153 -NAQLVA---------------IFGGQGNTDDYFEELRDLYQTYH-------VL--VGDL 187
Query: 632 PNAIEHTLQ---WARDNFEGIFRQSAENAAEYLEDPN------FVERVMKLPGSQPLEML 682
TL + E +F Q N E+LE+P+ ++ + P S PL +
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSI---PISCPLIGV 243
Query: 683 ENVKHALVDER-----PLNIKDCVAWARNH---------------WQDQYNNQIR--QLL 720
+ H +V + P ++ + A H W+ + + + +L
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 721 F-------------NFPPEQVTSS---GQPFWSGPKRCPKPLEFDVTD--PLHLQYIYTG 762
F + PP + S + G P P+ +++ +Q
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNE----GV---PSPM-LSISNLTQEQVQDYVNK 355
Query: 763 ANLKAELYGIPQVRNLDAIAQMV---KQVVV--PEFTPKS--GVTIAVTDAQLQNSNGDY 815
N + L P + + I+ +V K +VV P P+S G+ + + + + +G
Sbjct: 356 TN--SHL---PAGKQV-EIS-LVNGAKNLVVSGP---PQSLYGLNLTL--RKAKAPSGL- 402
Query: 816 DQDR--LGQLKNELPSIQELQGL------HITPL-----EFEKDDDTNLHMDFIVAASNL 862
DQ R + K + L H + L + D ++ F A ++
Sbjct: 403 DQSRIPFSERK---LKFS-NRFLPVASPFH-SHLLVPASDLINKDLVKNNVSF--NAKDI 455
Query: 863 RAANYGI-TPAD-RHTSKLIAGKIIPAIAT 890
+ Y +D R S I+ +I+ I
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Score = 56.6 bits (136), Expect = 4e-08
Identities = 82/517 (15%), Positives = 145/517 (28%), Gaps = 159/517 (30%)
Query: 23 QLNNTTCETFNMESVANHQNGSSATAMDQDI--DEGLYSRQLYVLGHDAMRRMASS---- 76
QL E FN + A D + L + + LG+ + S
Sbjct: 32 QLQ----EQFN----KILPEPTEGFAADDEPTTPAELVGK--F-LGYVSSLVEPSKVGQF 80
Query: 77 -DVLISGLGGLGVEIAKNVILSG--VKSVTLH-----DTTATSLSDLSSQFYLSEKDVGR 128
VL L +N L G + ++ DTT +L + + R
Sbjct: 81 DQVLNLCLTEF-----ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 129 NRAEVSHTNL------SQLNPYV------STKAYTGELSEAFIKKFRVVVLTNSTYD--- 173
+ S++ L +T Y EL + + TY
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY-----------QTYHVLV 184
Query: 174 EQLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTTGEN------PVSVIIAGV 227
L +++ D +F Q + T + P+S + GV
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 228 TREAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQLNGIEPRKVKVLGPYTFSIGDT-TKF 286
+ A VVT GF G+ S ++G T ++ + D+ F
Sbjct: 244 IQLAHYVVTA---KLLGFTPGEL--RSYLKGATG------HSQGLVTAVAIAETDSWESF 292
Query: 287 DEYVSG--------GIATQVKQPKILKFLPLPEALQQPEFVMTDFAKFESPANLHV---A 335
V G+ P LP P L+ + SP L +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNT--SLP-PSILEDSL---ENNEGVPSPM-LSISNLT 345
Query: 336 FSTLHNFVKSF-GYAPKPWNSADADQFLALAKESKLNNGELDEKLLQLFAKTAAGNCNPV 394
+ ++V + P A + + ++ L NG
Sbjct: 346 QEQVQDYVNKTNSHLP-------AGKQVEIS----LVNG-------------------AK 375
Query: 395 NAVIGG--------IVAQEVMKACSG------KF---HPIFQWLY------F------DA 425
N V+ G + KA SG F F + F A
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 426 VECIDENIAETDAIVNGSRYEGQVAIF----GKNFQE 458
+ I++++ + + N + Q+ ++ G + +
Sbjct: 436 SDLINKDLVKNNVSFNAK--DIQIPVYDTFDGSDLRV 470
Score = 48.9 bits (116), Expect = 9e-06
Identities = 54/301 (17%), Positives = 90/301 (29%), Gaps = 99/301 (32%)
Query: 205 FGNNFTVVDTTGENPVSVIIAGVTREAEGVVTCLDETRHGFEDGDYVTFSEVQGMTQLNG 264
+G F+++D NPV++ I + + + R + + T + G +
Sbjct: 1657 YG--FSILDIVINNPVNLTIHFGGEKGKRI-------RENYSAMIFETIVD--GKLKTEK 1705
Query: 265 IEPRKVKVLGPYTFSIGDTTKFDEYVSGGIATQVKQPKILKFLPLPEALQQPEFVMTDFA 324
I + YTF + ATQ QP AL +M A
Sbjct: 1706 IFKEINEHSTSYTFR-SEKGLLS-------ATQFTQP----------AL----TLME-KA 1742
Query: 325 KFE-------SPANLHVAFSTLHNFVKSFG-YAPKPWNSADADQFLALAKESKLNNGELD 376
FE PA+ A H S G YA ALA + +
Sbjct: 1743 AFEDLKSKGLIPADATFAG---H----SLGEYA-------------ALASLA----DVMS 1778
Query: 377 -EKLLQLFAK--TAAGNCNPVNAVIGGIVAQEVMKACS-GKFHPIFQWLYFDAVECIDEN 432
E L+++ P + + M A + G+ F +A++ + E
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYG---MIAINPGRVAASFS---QEALQYVVER 1832
Query: 433 IAETDA----IVNGSRY--EG-QVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMG 485
+ + IVN Y E Q G L + +L +
Sbjct: 1833 VGKRTGWLVEIVN---YNVENQQYVAAGDL--RALDTV-----------TNVLNFIKLQK 1876
Query: 486 V 486
+
Sbjct: 1877 I 1877
Score = 41.6 bits (97), Expect = 0.001
Identities = 50/310 (16%), Positives = 95/310 (30%), Gaps = 86/310 (27%)
Query: 402 VAQEVMKACSGKFHPIFQWLYFDAVECIDENIAETDAIVNGSRYEGQVAIFGKNFQEKLG 461
AQ+V F F ++ + N G + GK +E
Sbjct: 1641 AAQDVWNRADNHF---KDTYGFSILDIVINNPVNLTIHFGGEK--------GKRIRENYS 1689
Query: 462 KLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNR-QFLFRPHDVQQ 520
+ + + G + E K F + F ++ L L+ QF Q
Sbjct: 1690 AMIFETIVDGKLKTE--KIFK--EINEHSTSYTFRSEKGL-----LSATQF-------TQ 1733
Query: 521 PKSATAAKAI-KVMNPNVNITYHENRVGPETEKVYDDLF-------FESLDGIANALDNV 572
P KA + + + P D F + +L +A+ + +
Sbjct: 1734 PALTLMEKAAFEDLK--------SKGLIPA-----DATFAGHSLGEYAALASLADVMS-I 1779
Query: 573 EARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVP---HLTESYSSSQDPPEKSIPICTLK 629
E+ + V+ R G QV VP +Y P + + +
Sbjct: 1780 ESLV----EVVFYR------GMT-----MQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 630 NFPNAIEHT-------LQWARDNFEGIFRQ---SAENAA-EYLED-PNFVE----RVMKL 673
+E ++ N E +Q + + A + + + NF++ +++L
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVEN--QQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Query: 674 PGSQPLEMLE 683
S LE +E
Sbjct: 1883 QKSLSLEEVE 1892
Score = 38.5 bits (89), Expect = 0.015
Identities = 46/294 (15%), Positives = 72/294 (24%), Gaps = 113/294 (38%)
Query: 344 KSFGYAPKPWNSADADQFLALAKESKLNNGELDEKLLQLFAKTAAGNCNPVNAVI--GGI 401
K+ A WN AD +L + NPVN I GG
Sbjct: 1637 KTSKAAQDVWN--RADNHFKDT---------YGFSILDIVIN------NPVNLTIHFGGE 1679
Query: 402 VAQ-----------EVMKACSGKFHPIFQWLYFDAVECI----DENIAETD----AIVNG 442
+ E + K IF+ + + ++ T A+
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 443 SRYEGQVAIFGKNFQEK-LGKLKYFVVG------------AGAI----GCELLK------ 479
A F ++ + K L G A + E++
Sbjct: 1740 E-----KAAF-EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 480 ------------NFAMMGVGAGPGGQIFVTDM-------------DLIEKSNLNRQFLFR 514
N+ M+ + G F + L+E N N
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN-----V 1848
Query: 515 PHDVQQ-----PKSA-----TAAKAIKVMNPNVNITYHENRVGPETEKVYDDLF 558
+ QQ A IK+ I E + E+V LF
Sbjct: 1849 EN--QQYVAAGDLRALDTVTNVLNFIKLQ----KIDIIELQKSLSLEEVEGHLF 1896
Score = 35.0 bits (80), Expect = 0.14
Identities = 45/279 (16%), Positives = 87/279 (31%), Gaps = 80/279 (28%)
Query: 484 MGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHE 543
MG MDL + S + R + + + I + NP N+T H
Sbjct: 1631 MG-------------MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-NLTIHF 1676
Query: 544 NRVGPETEKV---YDDLFFES-LDGIANALDNVEARIYMDRRCVYSRKPLLESGTLG-TK 598
G + +++ Y + FE+ +DG + + E G L T+
Sbjct: 1677 G--GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS----EKGLLSATQ 1730
Query: 599 GNSQVVVPHLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSAENAA 658
+Q + ++ +D LK+ +G+ A A
Sbjct: 1731 -FTQPAL--TLMEKAAFED----------LKS----------------KGLIPADATFAG 1761
Query: 659 ----EY-----------LEDPNFVE----RVMKLPGSQPLEMLENVKHALVDERPLNI-K 698
EY +E VE R M + + P + L + ++ P +
Sbjct: 1762 HSLGEYAALASLADVMSIES--LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 699 DCVAWARNHWQDQYNNQIRQLL----FNFPPEQVTSSGQ 733
A + ++ + L+ +N +Q ++G
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
Score = 33.5 bits (76), Expect = 0.47
Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 62/237 (26%)
Query: 33 NMESVANHQNGSSATAMDQDIDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAK 92
N ++ H G + I E YS ++ D + ++ + + E +
Sbjct: 1668 NPVNLTIHFGGEKG----KRIREN-YSAMIFETIVDGKLK---TEKIFKEIN----EHST 1715
Query: 93 NVILSGVKSVTLHDT-------TATSLS---DLSSQFYLSEKDV--GRNRAEVSHTNLSQ 140
+ K + L T T + DL S+ + G H S
Sbjct: 1716 SYTFRSEKGL-LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-------H---S- 1763
Query: 141 LNPYVSTKAYTGELS-EAFIK--KFRVVVLTNSTYDEQLAISQITHANDIALIIADTRGL 197
L Y + + +S E+ ++ +R + + Q+A+ + +IA G
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVFYRGMTM-------QVAVPRDELGRSNYGMIAINPGR 1816
Query: 198 FAQVFCDFGNNFTVVDT----TGE-------NPVS---VIIAGVTREAEGVVTCLDE 240
A F + VV+ TG N V + AG R + V L+
Sbjct: 1817 VAASFSQEALQY-VVERVGKRTGWLVEIVNYN-VENQQYVAAGDLRALDTVTNVLNF 1871
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.23
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 15/38 (39%)
Query: 366 KES--KLNNGELDEKLLQLFAKTAAGNCNP---VNAVI 398
K++ KL + L+L+A +A P + A +
Sbjct: 19 KQALKKL------QASLKLYADDSA----PALAIKATM 46
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive,
ACT DOMA amino-acid biosynthesis, threonine
biosynthesis; HET: ANP; 2.30A {Methanocaldococcus
jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Length = 473
Score = 30.8 bits (70), Expect = 2.5
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 168 TNSTYDEQLAISQITHANDIALI------IADTRGLFAQVFCDFGNNFTVVD----TTGE 217
TN + I+ ++ALI + G A++F G V + E
Sbjct: 299 TNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE 358
Query: 218 NPVSVII 224
+S+++
Sbjct: 359 TNISLVV 365
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A
{Bacillus subtilis}
Length = 555
Score = 30.2 bits (69), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 70 MRRMASSDVLISGLGGLGVEIAKN 93
M+ + + + LGGLG EI KN
Sbjct: 1 MKFVKNDQTAVFALGGLG-EIGKN 23
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
glycosyltransferase, developmental protein,
transmembrane, G apparatus, notch signaling; 1.8A {Mus
musculus} PDB: 2j0b_A*
Length = 280
Score = 29.7 bits (66), Expect = 4.1
Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 6/140 (4%)
Query: 627 TLKNFPNAIEHTLQ-WARDNFEGIFRQSAENAAEYLEDPNFVERVMKLPGSQPLEMLENV 685
T + ++ L W + F + E V + L
Sbjct: 22 TWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQERLGPHLVVTQCSAEHSHPAL--- 78
Query: 686 KHALVDERPLNIKDCVAWARNHWQDQYNN--QIRQLLFNFPPEQVTSSGQPFWSGPKRCP 743
+ E + + W + D Y N + QLL FP ++ G+P + P
Sbjct: 79 SCKMAAEFDAFLVSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHAS 138
Query: 744 KPLEFDVTDPLHLQYIYTGA 763
+ T + + GA
Sbjct: 139 ELQSKQRTKLVRFWFATGGA 158
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 29.5 bits (67), Expect = 6.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 467 VVGAGAIGCELLKNFAMMGV 486
VVG+G G E + + +GV
Sbjct: 187 VVGSGVTGAEFVDAYTELGV 206
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 6.8
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 20/92 (21%)
Query: 894 VVAGLVSKKKIEPHVRALVFELCCQDESGEDVET--------TIVAVVAYCWSKGAPKLK 945
+V+GL + + LV + E E I+ +
Sbjct: 147 IVSGLELSDTKQKGKKFLVI-------AYEPFENIAIELPPNEILFSENNDMDNNNDGVD 199
Query: 946 YYDVEWTLWDRFEINQEMTLKQFLDYFQNEHK 977
+ + T WD I++ + QF +F+ +
Sbjct: 200 ELNKKCTFWD--AISKLYYV-QF--FFKQAEQ 226
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function;
2.00A {Candida albicans} PDB: 2x7p_A
Length = 321
Score = 29.3 bits (65), Expect = 7.2
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 584 YSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWAR 643
++ K ++ + K Q+ P + ++S D + +KNF +A+ +Q+
Sbjct: 179 FTSKKYYDNHEI--KQIDQIYTPWSSWVVATSSDSLQAKSD--VIKNFIDAVNQGIQYYN 234
Query: 644 DNFEGI-------FRQSAENAAEYLEDPNFVERVMKLPGSQPLEMLENVKHALVD 691
++ + SAE+A E+ + F R+ K P ++ K L
Sbjct: 235 EHVDEAIEYISSNLDYSAEDAKEWTKTVEFNSRIGKTP-LDWDTIVVKTKDTLKL 288
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.1 bits (66), Expect = 7.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 467 VVGAGAIGCELLKNFAMMGV 486
VVG G IG E++++ +G+
Sbjct: 156 VVGGGFIGLEMMESLHHLGI 175
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.1 bits (66), Expect = 7.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 467 VVGAGAIGCELLKNFAMMGV 486
V+G G IG E+++N G+
Sbjct: 192 VIGGGFIGVEMVENLRERGI 211
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 29.0 bits (66), Expect = 8.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 467 VVGAGAIGCELLKNFAMMGV 486
V+GAG IG E + M
Sbjct: 152 VIGAGPIGMEAIDFLVKMKK 171
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.0 bits (66), Expect = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 467 VVGAGAIGCELLKNFAMMGV 486
VVGAG + E+L+N G+
Sbjct: 153 VVGAGYVSLEVLENLYERGL 172
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 9.3
Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 5/100 (5%)
Query: 11 ELEVEVEEEEHKQLNNTTCETFNMESVANHQNGSSATAMDQDI-DEGLYSRQL-YVLGHD 68
E +E E H + + ++ + + GL L H
Sbjct: 1285 EFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHG 1344
Query: 69 ---AMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLH 105
S + + LG VI K +T H
Sbjct: 1345 TSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGH 1384
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 29.0 bits (66), Expect = 9.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 467 VVGAGAIGCELLKNFAMMGV 486
V+G+G IG E + FA G
Sbjct: 154 VIGSGYIGIEAAEAFAKAGK 173
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 29.1 bits (66), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 467 VVGAGAIGCELLKNFAMMGV 486
VVGAG IG EL + F G
Sbjct: 199 VVGAGYIGVELAEAFQRKGK 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,081,782
Number of extensions: 950825
Number of successful extensions: 2546
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2465
Number of HSP's successfully gapped: 69
Length of query: 986
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 883
Effective length of database: 3,825,930
Effective search space: 3378296190
Effective search space used: 3378296190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.2 bits)