RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7300
(986 letters)
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 211 bits (539), Expect = 9e-60
Identities = 66/508 (12%), Positives = 150/508 (29%), Gaps = 66/508 (12%)
Query: 443 SRYEGQVAIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLI 502
+Y+ Q+ ++G + QE L ++ A A G E+LKN + G+G + D + +
Sbjct: 6 QKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIG-----SFTIIDGNQV 60
Query: 503 EKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESL 562
+ F + + + ++ A + ++ +N +V+ ++ E + D FF
Sbjct: 61 SGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLD--NDPSFFCRF 118
Query: 563 DGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPHLTESYSSSQDPPEKS 622
+ + + S+ PLL T G G ++++ E P
Sbjct: 119 TVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIK---EHPVIESHPDNAL 175
Query: 623 IPICTLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVMKLPGSQP---- 678
+ K FP EH + D+ E + + ++ + +
Sbjct: 176 EDLRLDKPFPELREHFQSYDLDHMEKKDH---SHTPWIVIIAKYLAQWYSETNGRIPKTY 232
Query: 679 ---------LEMLENVKHALVDERPLNIKDCVAWARNHWQD-QYNNQIRQLLFNFPPEQV 728
+ E N ++ + Q + I + + +
Sbjct: 233 KEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINI 292
Query: 729 TSSGQPFW----------SGPKRCPKPLEFDVTDP-------LHLQYIY----------- 760
T FW + + P+ + D + LQ +Y
Sbjct: 293 TKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAV 352
Query: 761 --TGANLKAELYGIPQVRNLDAIAQMVK---QVVVPEFTPKSGVTIAVTDAQLQNSNGDY 815
A L + P+ + + + + V + T + + +
Sbjct: 353 GNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMD 412
Query: 816 DQDRLGQLK---NELPSIQELQGLHITPLEFEKDDDTNLHMDFIVAASNLRAANYGITPA 872
+ D L + + QG + ++ ++D + + +
Sbjct: 413 NPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDD 472
Query: 873 DRHTSKLIAGKIIPAIATTTSVVAGLVS 900
H IA + + G +
Sbjct: 473 YVHEFCRYGAAEPHTIA---AFLGGAAA 497
Score = 165 bits (420), Expect = 5e-44
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 7/174 (4%)
Query: 53 IDEGLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSL 112
+ E Y RQL + G + S+ V + G EI KN++L G+ S T+ D S
Sbjct: 3 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 62
Query: 113 SDLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE------AFIKKFRVVV 166
D + F+L +G+NRAE + L +LN VS +F +F VVV
Sbjct: 63 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 122
Query: 167 LTNSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGNNFTVVDTTGENPV 220
T L ++ + + I L+I T GL + V+++ +N +
Sbjct: 123 ATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIK-EHPVIESHPDNAL 175
Score = 110 bits (277), Expect = 7e-26
Identities = 31/211 (14%), Positives = 65/211 (30%), Gaps = 36/211 (17%)
Query: 254 SEVQGMTQLNGIEPRKVKVLGPYTF--------SIGDTTKFDEYVSGGIATQVKQP---- 301
E QG + G P + G Y + D +V+ + + + P
Sbjct: 312 KEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESIS 371
Query: 302 --------------KILKFLPLPEALQQPEF----VMTDFAKFESPANLHVAFSTLHNFV 343
++++ L E +++ ++ L++ + F
Sbjct: 372 EKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFH 431
Query: 344 KSFGYAPKPWNSADADQFLALAKE--SKLN----NGELDEKLLQLFAKTAAGNCNPVNAV 397
K G P N + L L + + + + F + A + + A
Sbjct: 432 KQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAF 491
Query: 398 IGGIVAQEVMKACSGKFHPIFQWLYFDAVEC 428
+GG AQEV+K + +F + +
Sbjct: 492 LGGAAAQEVIKIITKQFVIFNNTYIYSGMSQ 522
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 175 bits (444), Expect = 4e-48
Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 24/238 (10%)
Query: 450 AIFGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNR 509
++ Q L K V+GAG +GCELLKN A+ G QI V DMD I+ SNLNR
Sbjct: 25 EPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNR 79
Query: 510 QFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLDGIANAL 569
QFLFRP D+ +PK+ AA+ + PN N+ H N++ ++D F+ I L
Sbjct: 80 QFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD-----FNDTFYRQFHIIVCGL 134
Query: 570 DNVEARIYMDRRCVYSRK------------PLLESGTLGTKGNSQVVVPHLTESYSSSQD 617
D++ AR +++ + PL++ GT G KGN++V++P +T + +
Sbjct: 135 DSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 194
Query: 618 --PPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSAENAAEYLEDPNFVERVMKL 673
PP+ + P+CT+ + P EH +++ R + E +DP ++ + +
Sbjct: 195 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQK 252
Score = 99.8 bits (248), Expect = 1e-22
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 55 EGLYSRQLYVLGHDAM-RRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLS 113
G ++ + +++ + + VL+ G GGLG E+ KN+ LSG + + + D +S
Sbjct: 16 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 75
Query: 114 DLSSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGELSE---AFIKKFRVVVLTNS 170
+L+ QF KD+GR +AEV+ L+ P + + ++ + F ++F ++V
Sbjct: 76 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 135
Query: 171 TYDEQLAISQI------------THANDIALIIADTRGLFAQVFCDFGNN 208
+ + I+ + ++ + LI T G
Sbjct: 136 SIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGM 185
Score = 83.6 bits (206), Expect = 2e-17
Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 14/141 (9%)
Query: 844 EKDDDTNLHMDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVS--- 900
D D H+ +I S RA+ Y I ++ + +IIPA+A+T +V+A + +
Sbjct: 237 PLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEV 296
Query: 901 KKKIEPHVRALVFELCCQDESGEDVETTIVAVVAYCWSKGAPKLKYYDVEWTLWDRFEIN 960
K L L D G T C L + +
Sbjct: 297 FKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCP-----------ACSQLPQNIQFS 345
Query: 961 QEMTLKQFLDYFQNEHKLEIT 981
L++ LDY N L++
Sbjct: 346 PSAKLQEVLDYLTNSASLQMK 366
Score = 38.9 bits (90), Expect = 0.002
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 6/122 (4%)
Query: 309 LPEALQQPEFVMTDFAKFESPANLHVAFSTLHNFVKSFGYAPK-PWNSADADQFLALAKE 367
L Q F M A + + + + K + P + D + + ++
Sbjct: 193 LELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQK 252
Query: 368 -----SKLNNGELDEKLLQLFAKTAAGNCNPVNAVIGGIVAQEVMKACSGKFHPIFQWLY 422
S+ N + +L Q K NAVI + A EV K + + P+ +L
Sbjct: 253 SLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLV 312
Query: 423 FD 424
F+
Sbjct: 313 FN 314
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
MoeB {Escherichia coli [TaxId: 562]}
Length = 247
Score = 85.8 bits (211), Expect = 4e-19
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 11/166 (6%)
Query: 444 RYEGQVAI--FGKNFQEKLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDL 501
RY Q+ + F + QE L + +VG G +GC + A GV G + + D D
Sbjct: 10 RYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGV-----GNLTLLDFDT 64
Query: 502 IEKSNLNRQFLFRPHDVQQPKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFES 561
+ SNL RQ L V QPK +A A+ +NP++ IT +
Sbjct: 65 VSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLV 124
Query: 562 LDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPH 607
LD DNV R ++ C ++ PL+ + +G V
Sbjct: 125 LDCT----DNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQ 166
Score = 71.9 bits (175), Expect = 2e-14
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 11/192 (5%)
Query: 58 YSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILSGVKSVTLHDTTATSLSDL 115
Y+RQ+ + D + S VLI GLGGLG ++ + +GV ++TL D SLS+L
Sbjct: 11 YNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNL 70
Query: 116 SSQFYLSEKDVGRNRAEVSHTNLSQLNPYVSTKAYTGEL----SEAFIKKFRVVVLTNST 171
Q S+ VG+ + E + L+++NP+++ L A I + +V+
Sbjct: 71 QRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDN 130
Query: 172 YDEQLAISQITHANDIALIIADTRGLFAQVFC-----DFGNNFTVVDTTGENPVSVIIAG 226
+ ++ A + L+ + Q+ + GEN ++ + AG
Sbjct: 131 VAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENALTCVEAG 190
Query: 227 VTREAEGVVTCL 238
V GV+ L
Sbjct: 191 VMAPLIGVIGSL 202
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 29.4 bits (64), Expect = 1.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 464 KYFVVGAGAIGCELLKNFAMMGVGA 488
K V+G+ G E ++ + A
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDA 26
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 29.0 bits (63), Expect = 2.0
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 467 VVGAGAIGCELLKNFAMMGV 486
+VG G G E+ G
Sbjct: 8 IVGTGLAGVEVAFGLRASGW 27
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 28.9 bits (63), Expect = 2.2
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 464 KYFVVGAGAIGCELLKNFAMMG 485
K +VG G G EL K +
Sbjct: 2 KVVIVGNGPGGFELAKQLSQTY 23
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 28.5 bits (62), Expect = 2.7
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 467 VVGAGAIGCELLKNFAMMGV 486
V+GAG + G
Sbjct: 8 VLGAGLASVSFVAELRQAGY 27
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 281
Score = 28.7 bits (64), Expect = 2.9
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 550 TEKVYDDLFFESLDGIA---NALDNVEARIYMDRRCVYSRKPL 589
+ K Y+ L ++ I + + + R
Sbjct: 52 SLKHYEFLKEAGVNYITMGNHTWFQKLDLAVVINKKDLVRPLN 94
>d2rh3a1 a.43.1.10 (A:82-202) VirC2 {Agrobacterium tumefaciens
[TaxId: 358]}
Length = 121
Score = 27.7 bits (61), Expect = 3.3
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 21/107 (19%)
Query: 548 PETEKVYDDLFFESLDGIANALDNVEARIYMDRRCVYSRKPLLESGTLGTKGNSQVVVPH 607
PE K+YD+L + + +L + RR + + +L G+
Sbjct: 12 PEVSKIYDNLILQYSP--SKSLQMIL------RRALGDFENMLADGSFRA---------- 53
Query: 608 LTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDNFEGIFRQSA 654
+SY EKSI + T + FP ++ ++ AR++F+ + ++A
Sbjct: 54 APKSYPIPHTAFEKSIIVQTSRMFPVSL---IEAARNHFDPLGLETA 97
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 27.8 bits (60), Expect = 4.3
Identities = 10/103 (9%), Positives = 24/103 (23%), Gaps = 8/103 (7%)
Query: 461 GKLKYFVVGAGAIGCELLKNFAMMGVGAGPGGQIFVTDMDLIEKSNLNRQFLFRPHDVQQ 520
G+ K VVG G G K + P ++ + + +
Sbjct: 2 GR-KVVVVGGGTGGATAAKYIKLA----DPSIEVTLIEP---NTDYYTCYLSNEVIGGDR 53
Query: 521 PKSATAAKAIKVMNPNVNITYHENRVGPETEKVYDDLFFESLD 563
+ + + + + +K+
Sbjct: 54 KLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFG 96
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 308
Score = 27.6 bits (61), Expect = 6.6
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 459 KLGKLKYFVVGAGAIGCELLKNFAMMGVGAGPG-----GQIFVTDMD-LIEKSNLNRQFL 512
+ + KY GAGA + + G +I++ D+D L+ K+
Sbjct: 22 LVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPR 81
Query: 513 FRPHDVQQPKSATAAKAIKVMNPNV 537
P++ + + I+ P
Sbjct: 82 HVQFAKDMPETTSILEVIRAARPGA 106
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.6 bits (60), Expect = 7.0
Identities = 12/112 (10%), Positives = 29/112 (25%), Gaps = 6/112 (5%)
Query: 154 LSEAFIKKFRVVVLT------NSTYDEQLAISQITHANDIALIIADTRGLFAQVFCDFGN 207
+ + +K R+ ++ + + + LI+A TR + A++
Sbjct: 1 IEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRG 60
Query: 208 NFTVVDTTGENPVSVIIAGVTREAEGVVTCLDETRHGFEDGDYVTFSEVQGM 259
T V T + + + + E
Sbjct: 61 LPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFT 112
>d2byca1 d.58.10.2 (A:1-136) Blue light receptor BlrB {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 136
Score = 26.8 bits (59), Expect = 7.5
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 555 DDLFFESLDGIANALDNVEARIYMDRR 581
F ++++G +A D + I D R
Sbjct: 46 GVHFVQTIEGPRSACDELFRLISADPR 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,608,997
Number of extensions: 173636
Number of successful extensions: 629
Number of sequences better than 10.0: 1
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 22
Length of query: 986
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 892
Effective length of database: 1,116,976
Effective search space: 996342592
Effective search space used: 996342592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)