Query psy7301
Match_columns 129
No_of_seqs 150 out of 585
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 23:19:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01408 Ube1 ubiquitin-activ 100.0 7.4E-43 1.6E-47 323.6 10.9 126 1-128 816-975 (1008)
2 KOG2012|consensus 100.0 4.5E-41 9.8E-46 304.8 6.7 126 1-128 822-981 (1013)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 1.6E-39 3.4E-44 280.1 10.6 114 1-114 287-435 (435)
4 cd01489 Uba2_SUMO Ubiquitin ac 99.9 3.1E-25 6.6E-30 184.5 7.8 71 1-73 220-290 (312)
5 PF02134 UBACT: Repeat in ubiq 99.9 4.2E-22 9.1E-27 132.7 6.0 57 1-57 10-66 (67)
6 KOG2013|consensus 99.8 2.3E-20 5E-25 163.5 5.8 72 1-74 348-419 (603)
7 cd01484 E1-2_like Ubiquitin ac 99.8 4.8E-20 1E-24 147.8 5.1 52 1-52 183-234 (234)
8 PF09358 UBA_e1_C: Ubiquitin-a 99.8 1.2E-19 2.7E-24 133.7 3.9 64 64-128 1-97 (125)
9 cd01488 Uba3_RUB Ubiquitin act 99.7 4.3E-17 9.3E-22 134.8 6.2 59 1-59 201-259 (291)
10 KOG2015|consensus 99.5 1.3E-14 2.8E-19 123.1 6.2 68 1-71 245-312 (422)
11 TIGR01408 Ube1 ubiquitin-activ 94.4 0.036 7.8E-07 53.2 3.3 33 1-33 714-750 (1008)
12 KOG2012|consensus 86.4 0.63 1.4E-05 44.6 3.0 27 1-27 724-751 (1013)
13 cd00757 ThiF_MoeB_HesA_family 85.2 1.2 2.6E-05 35.0 3.7 30 31-60 178-207 (228)
14 PF08825 E2_bind: E2 binding d 84.3 0.49 1.1E-05 32.8 1.0 37 89-125 25-63 (84)
15 PF05237 MoeZ_MoeB: MoeZ/MoeB 79.6 2.7 5.9E-05 28.4 3.3 26 34-59 24-49 (84)
16 PRK08644 thiamine biosynthesis 79.1 2.3 5.1E-05 33.4 3.3 28 32-59 183-210 (212)
17 PRK08328 hypothetical protein; 77.4 3.1 6.6E-05 33.0 3.5 27 33-59 183-209 (231)
18 TIGR02355 moeB molybdopterin s 76.3 3.2 7E-05 33.3 3.4 28 32-59 182-209 (240)
19 TIGR02356 adenyl_thiF thiazole 74.3 2.9 6.3E-05 32.4 2.6 25 31-55 178-202 (202)
20 PRK05690 molybdopterin biosynt 73.4 4.6 0.0001 32.3 3.6 27 33-59 191-217 (245)
21 cd01492 Aos1_SUMO Ubiquitin ac 61.8 9.3 0.0002 29.6 3.1 24 36-59 155-178 (197)
22 cd01485 E1-1_like Ubiquitin ac 60.5 10 0.00022 29.3 3.1 49 9-59 131-179 (198)
23 PRK05597 molybdopterin biosynt 59.4 9.4 0.0002 32.3 2.9 26 34-59 189-214 (355)
24 cd01493 APPBP1_RUB Ubiquitin a 55.9 11 0.00024 33.0 2.9 36 30-69 379-414 (425)
25 PRK12475 thiamine/molybdopteri 54.3 16 0.00034 30.9 3.5 27 33-59 184-210 (338)
26 PRK08762 molybdopterin biosynt 53.7 13 0.00029 31.4 2.9 25 35-59 301-325 (376)
27 cd01490 Ube1_repeat2 Ubiquitin 52.5 9.8 0.00021 33.7 2.0 19 1-19 258-276 (435)
28 PRK05600 thiamine biosynthesis 50.7 16 0.00034 31.3 3.0 28 32-59 203-230 (370)
29 PRK08223 hypothetical protein; 47.4 21 0.00046 29.9 3.1 27 33-59 215-241 (287)
30 PHA00736 hypothetical protein 41.9 41 0.00089 23.0 3.3 32 24-56 28-59 (79)
31 PRK07878 molybdopterin biosynt 41.9 26 0.00055 30.0 2.9 25 35-59 208-232 (392)
32 PRK07688 thiamine/molybdopteri 41.6 33 0.00071 29.0 3.5 25 35-59 186-210 (339)
33 PRK07411 hypothetical protein; 37.7 42 0.00091 28.8 3.6 25 35-59 200-224 (390)
34 KOG2014|consensus 31.3 37 0.00079 29.3 2.1 38 28-67 276-313 (331)
35 KOG3239|consensus 24.7 36 0.00079 27.2 0.9 36 91-126 11-50 (193)
36 KOG2016|consensus 23.9 65 0.0014 29.4 2.5 30 38-69 481-510 (523)
37 COG1798 DPH5 Diphthamide biosy 21.9 50 0.0011 27.6 1.3 36 9-56 96-131 (260)
38 TIGR02354 thiF_fam2 thiamine b 21.4 88 0.0019 24.3 2.5 25 31-55 176-200 (200)
39 TIGR03693 ocin_ThiF_like putat 20.7 1E+02 0.0023 28.9 3.2 22 37-58 281-302 (637)
No 1
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=7.4e-43 Score=323.60 Aligned_cols=126 Identities=56% Similarity=0.850 Sum_probs=119.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHcCCCChhhccccccccccccccccC
Q psy7301 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTDIEKYKNGFVNLALPFFGFSE 80 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~~~~~~e~~rn~f~nla~p~~~~se 80 (129)
||||+|||||||+||+|++.||+++|+||||||||||||||+||||||+|+||+++|..+++.|||+|+|||+|+|.|+|
T Consensus 816 idFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nlalp~~~~se 895 (1008)
T TIGR01408 816 IDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNLAIPLFVFTE 895 (1008)
T ss_pred HHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhhccccccccC
Confidence 69999999999999999999999999999999999999999999999999999999987899999999999999999999
Q ss_pred CCCCCCCc----------------------------------eeeEEEecceeeeeccCCchhHhhhcCCcHHHHHhhhc
Q psy7301 81 PIAAPKDR----------------------------------AITMLSQGVCMLYSYFMPPAKREERLNLPLVEVVRRSA 126 (129)
Q Consensus 81 P~~~~~~~----------------------------------ev~~l~~g~~~lY~~~~~~~~~~~rl~~~l~elv~~~~ 126 (129)
|.++++.+ ||+||++|++|||++||+ +.+|||+++|+|||++++
T Consensus 896 P~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~~~~~~~~~v~~is~g~~~lY~~~~~--~~~erl~~~l~el~~~~~ 973 (1008)
T TIGR01408 896 PTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVKEKYGLEPTMVSQGVKLLYVPVMP--GHAERLKLKMHKLVKPTT 973 (1008)
T ss_pred CCCCCceeecCceeccceEEEEecCCCcHHHHHHHHHHHhCCeeEEEEcCceEEEeccch--hhHHhcCCCHHHHHHHhc
Confidence 99998632 899999999999999995 356899999999999998
Q ss_pred cC
Q psy7301 127 PI 128 (129)
Q Consensus 127 k~ 128 (129)
|+
T Consensus 974 k~ 975 (1008)
T TIGR01408 974 KK 975 (1008)
T ss_pred cC
Confidence 75
No 2
>KOG2012|consensus
Probab=100.00 E-value=4.5e-41 Score=304.84 Aligned_cols=126 Identities=65% Similarity=0.978 Sum_probs=120.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHcCCCChhhccccccccccccccccC
Q psy7301 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTDIEKYKNGFVNLALPFFGFSE 80 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~~~~~~e~~rn~f~nla~p~~~~se 80 (129)
||||+||||+||+||+|++.||+++|+|||+||||||||||+|+||+|+|+||++.|+.+++.|||+|+|||+|+|.++|
T Consensus 822 ~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLAlp~f~~~e 901 (1013)
T KOG2012|consen 822 MDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLALPFFSFAE 901 (1013)
T ss_pred hHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhcccccceeecc
Confidence 79999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CCCCCCCc----------------------------------eeeEEEecceeeeeccCCchhHhhhcCCcHHHHHhhhc
Q psy7301 81 PIAAPKDR----------------------------------AITMLSQGVCMLYSYFMPPAKREERLNLPLVEVVRRSA 126 (129)
Q Consensus 81 P~~~~~~~----------------------------------ev~~l~~g~~~lY~~~~~~~~~~~rl~~~l~elv~~~~ 126 (129)
|+++++++ +|+||++|++|||++||| +.+|||++++.|||++++
T Consensus 902 p~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~~~~~~gl~i~mls~G~~lly~~~~~--k~~erl~~~v~elv~~~~ 979 (1013)
T KOG2012|consen 902 PLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDHLEEQHGLEITMLSQGVSLLYASFMP--KHAERLPLRVTELVRDVT 979 (1013)
T ss_pred cCCCcceeeecccceeeeEEEEecCCCCHHHHHHHHhhhcCceEEEEeccceeehhhhhh--HHHHhcCCcHHHHHHHHh
Confidence 99988642 999999999999999999 456999999999999998
Q ss_pred cC
Q psy7301 127 PI 128 (129)
Q Consensus 127 k~ 128 (129)
|+
T Consensus 980 k~ 981 (1013)
T KOG2012|consen 980 KK 981 (1013)
T ss_pred cc
Confidence 85
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=1.6e-39 Score=280.11 Aligned_cols=114 Identities=73% Similarity=1.098 Sum_probs=108.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHcCCCChhhccccccccccccccccC
Q psy7301 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTDIEKYKNGFVNLALPFFGFSE 80 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~~~~~~e~~rn~f~nla~p~~~~se 80 (129)
||||+|+|||||+||+|++.|++++|+||||||||||||||+|||++|+|++|+++|..+++.|||+|+|||+|+|.|+|
T Consensus 287 ~~fi~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nla~p~~~~~~ 366 (435)
T cd01490 287 MDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNLALPFFAFSE 366 (435)
T ss_pred HHHHHHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhccCCcccccc
Confidence 68999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred CCCCCCCc-----------------------------------eeeEEEecceeeeeccCCchhHhhhc
Q psy7301 81 PIAAPKDR-----------------------------------AITMLSQGVCMLYSYFMPPAKREERL 114 (129)
Q Consensus 81 P~~~~~~~-----------------------------------ev~~l~~g~~~lY~~~~~~~~~~~rl 114 (129)
|++|++.+ ||+||++|++|||++|||+++.+|||
T Consensus 367 p~~~~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~~~~v~~i~~g~~~ly~~~~~~~~~~~r~ 435 (435)
T cd01490 367 PIPAPKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKYGLEVTMLSQGVSMLYSSFMPPAKLKERL 435 (435)
T ss_pred CCCCCccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHhCCeEEEEEeCCeEEEeecCCchhhhhcC
Confidence 99988532 99999999999999999988877774
No 4
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.92 E-value=3.1e-25 Score=184.54 Aligned_cols=71 Identities=45% Similarity=0.701 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHcCCCChhhcccccccccc
Q psy7301 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTDIEKYKNGFVNLAL 73 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~~~~~~e~~rn~f~nla~ 73 (129)
|+||+++||+||++|||+..|++++|+||||||||||||||+|||++|+|++|++.+. .+.+||+|+|+.-
T Consensus 220 ~~~v~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~--~~~~~~~~~~~~~ 290 (312)
T cd01489 220 LDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGD--KEQCRTVFLNLQP 290 (312)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhh--HHHhhhHhhhccc
Confidence 6899999999999999999999999999999999999999999999999999999986 7899999999763
No 5
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.86 E-value=4.2e-22 Score=132.75 Aligned_cols=57 Identities=56% Similarity=0.834 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHcC
Q psy7301 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKG 57 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~~ 57 (129)
++||+++|||||++|||++.|++++++++|+|||+++||||+|||++|.|++|+++|
T Consensus 10 ~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~ 66 (67)
T PF02134_consen 10 LDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN 66 (67)
T ss_dssp HHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999999999999987
No 6
>KOG2013|consensus
Probab=99.81 E-value=2.3e-20 Score=163.51 Aligned_cols=72 Identities=39% Similarity=0.557 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHcCCCChhhccccccccccc
Q psy7301 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTDIEKYKNGFVNLALP 74 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~~~~~~e~~rn~f~nla~p 74 (129)
|+||++|+|+||+.||||..++|++|+||||||||||||||+|||++|+|.+|+++|. +.++++.|++-...
T Consensus 348 ~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~~--~~~~~~~f~~~~~n 419 (603)
T KOG2013|consen 348 MEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGGD--FDDCNMIFLAKRPN 419 (603)
T ss_pred HHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhccc--hhcceeeEEccCCC
Confidence 6899999999999999999999999999999999999999999999999999999874 78999999987754
No 7
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.80 E-value=4.8e-20 Score=147.83 Aligned_cols=52 Identities=48% Similarity=0.704 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHH
Q psy7301 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELI 52 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~ 52 (129)
||||+++||+||++|||++.|++++|+||||||||||||||+|||+||+|++
T Consensus 183 ~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 183 IQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence 5899999999999999999999999999999999999999999999999974
No 8
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.78 E-value=1.2e-19 Score=133.71 Aligned_cols=64 Identities=59% Similarity=1.058 Sum_probs=52.5
Q ss_pred ccccccccccccccccCCCCCCCCc---------------------------------eeeEEEecceeeeeccCCchhH
Q psy7301 64 YKNGFVNLALPFFGFSEPIAAPKDR---------------------------------AITMLSQGVCMLYSYFMPPAKR 110 (129)
Q Consensus 64 ~rn~f~nla~p~~~~seP~~~~~~~---------------------------------ev~~l~~g~~~lY~~~~~~~~~ 110 (129)
|||+|+|||+|+|.||||++|++.+ ||+||++|++|||++| +..+.
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f-~~~~~ 79 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSF-PPPKH 79 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEETT--HHHH
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEecC-Chhhh
Confidence 8999999999999999999999752 9999999999999999 77788
Q ss_pred hhhcCCcHHHHHhhhccC
Q psy7301 111 EERLNLPLVEVVRRSAPI 128 (129)
Q Consensus 111 ~~rl~~~l~elv~~~~k~ 128 (129)
++||+++++|||++++|+
T Consensus 80 ~~rl~~~i~elv~~v~k~ 97 (125)
T PF09358_consen 80 KERLKMPISELVEEVTKK 97 (125)
T ss_dssp HHHTTSBHHHHHHHHTSS
T ss_pred HHHhCCcHHHHHHHhcCC
Confidence 899999999999999886
No 9
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.68 E-value=4.3e-17 Score=134.81 Aligned_cols=59 Identities=27% Similarity=0.501 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
|+||++.|+.||++|||+..+++.+++++|||||||+||||+|||+||.|++|++++..
T Consensus 201 ~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~ 259 (291)
T cd01488 201 IEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCY 259 (291)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccc
Confidence 58999999999999999999999999999999999999999999999999999999864
No 10
>KOG2015|consensus
Probab=99.53 E-value=1.3e-14 Score=123.15 Aligned_cols=68 Identities=31% Similarity=0.481 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHcCCCChhhcccccccc
Q psy7301 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTDIEKYKNGFVNL 71 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~~~~~~e~~rn~f~nl 71 (129)
|+||+..++.||..|+|+..++..+.++.++||||+|||||+||+.||.|++|++.... .+-+.|+|.
T Consensus 245 I~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~---~~~~Nym~~ 312 (422)
T KOG2015|consen 245 IEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATD---DPLDNYMNY 312 (422)
T ss_pred HHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc---hhhhhheee
Confidence 58999999999999999999999999999999999999999999999999999999743 444555554
No 11
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=94.39 E-value=0.036 Score=53.16 Aligned_cols=33 Identities=36% Similarity=0.418 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHhcCCCCC--Ch--hhHHHHhcccc
Q psy7301 1 MDFIVAASNLRAANYGITPA--DR--HTSKLIAGKII 33 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~~--~~--~~~k~iag~II 33 (129)
++||+++|||||++|||+.. ++ ...+.++.++.
T Consensus 714 ~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~ 750 (1008)
T TIGR01408 714 LSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVK 750 (1008)
T ss_pred HHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCC
Confidence 48999999999999999974 44 56667776653
No 12
>KOG2012|consensus
Probab=86.36 E-value=0.63 Score=44.60 Aligned_cols=27 Identities=44% Similarity=0.667 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHhcCCCC-CChhhHHH
Q psy7301 1 MDFIVAASNLRAANYGITP-ADRHTSKL 27 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~-~~~~~~k~ 27 (129)
++||.||+||||.+|||++ .||.....
T Consensus 724 l~fv~Aaa~l~a~~~gi~~~~d~~~~~~ 751 (1013)
T KOG2012|consen 724 LNFVQAAANLRAEVYGIPGSQDREALAE 751 (1013)
T ss_pred HHHHHHHHHHHHHhcCCCcccCHHHhhh
Confidence 4799999999999999998 45554443
No 13
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.17 E-value=1.2 Score=35.01 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=26.6
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHcCCCC
Q psy7301 31 KIIPAIATTTSVVAGLVCLELIKLAKGFTD 60 (129)
Q Consensus 31 ~IIPAiaTTnA~Vagl~~~El~K~l~~~~~ 60 (129)
...|+++++++++|++++.|++|++.|..+
T Consensus 178 ~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~ 207 (228)
T cd00757 178 AEAGVLGPLVGVIGSLQALEALKILLGIGE 207 (228)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 457889999999999999999999998753
No 14
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=84.34 E-value=0.49 Score=32.80 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=28.2
Q ss_pred eeeEEEecceeeeeccCCchhHhhh--cCCcHHHHHhhh
Q psy7301 89 AITMLSQGVCMLYSYFMPPAKREER--LNLPLVEVVRRS 125 (129)
Q Consensus 89 ev~~l~~g~~~lY~~~~~~~~~~~r--l~~~l~elv~~~ 125 (129)
+-.+|+.++.-||++..|.-+++.| |+++|.||+.+.
T Consensus 25 k~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~g 63 (84)
T PF08825_consen 25 KKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSDG 63 (84)
T ss_dssp SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHSS
T ss_pred CCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcCC
Confidence 3356778999999999876665554 999999997654
No 15
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=79.56 E-value=2.7 Score=28.36 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=20.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 34 PAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 34 PAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
.-+..+.++|++++..|++|++.|..
T Consensus 24 GVlg~~~giigslqA~eaik~l~g~~ 49 (84)
T PF05237_consen 24 GVLGPVVGIIGSLQANEAIKLLLGIG 49 (84)
T ss_dssp -B-HHHHHHHHHHHHHHHHHHHCT-S
T ss_pred ccccchHHHHHHHHHHHHHHHHHhcC
Confidence 34677889999999999999999853
No 16
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=79.15 E-value=2.3 Score=33.39 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.4
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 32 IIPAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 32 IIPAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
..+.++.+.++|+++++.|++|++.|..
T Consensus 183 ~~gv~~~~~~~i~~~~a~ealk~l~~~~ 210 (212)
T PRK08644 183 GNPLMAPRVNIAAAHQANLVLRLILGEE 210 (212)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHhCCC
Confidence 4567889999999999999999999853
No 17
>PRK08328 hypothetical protein; Provisional
Probab=77.42 E-value=3.1 Score=33.05 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=23.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 33 IPAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 33 IPAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
.|.+.+++++||++++.|++|++.|..
T Consensus 183 ~~~~~~~~~ii~~~~a~e~~k~l~g~~ 209 (231)
T PRK08328 183 FPILGATAGVIGSIQAMEVIKLITGYG 209 (231)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHhCCC
Confidence 466889999999999999999999864
No 18
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=76.33 E-value=3.2 Score=33.26 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.3
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 32 IIPAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 32 IIPAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
..+.++.++++++++++.|++|++.|..
T Consensus 182 ~~gv~~p~~~~~~~~~a~e~ik~l~g~~ 209 (240)
T TIGR02355 182 EAGVMAPVVGVVGSLQAMEAIKVLAGIG 209 (240)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHhCCC
Confidence 3456888999999999999999999864
No 19
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=74.31 E-value=2.9 Score=32.40 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.0
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHH
Q psy7301 31 KIIPAIATTTSVVAGLVCLELIKLA 55 (129)
Q Consensus 31 ~IIPAiaTTnA~Vagl~~~El~K~l 55 (129)
...++++++.++||++++.|++|++
T Consensus 178 ~~~~~~~~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 178 ATAGVIGPVVGVIGSLQALEALKLL 202 (202)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999985
No 20
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=73.38 E-value=4.6 Score=32.35 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 33 IPAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 33 IPAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
.+.++.++++++++++.|++|++.|..
T Consensus 191 ~gv~~~~~~~~~~~~a~e~ik~l~g~~ 217 (245)
T PRK05690 191 AGVMAPLVGVIGSLQAMEAIKLLTGYG 217 (245)
T ss_pred CCccchHHHHHHHHHHHHHHHHHhCCC
Confidence 456788999999999999999999864
No 21
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=61.81 E-value=9.3 Score=29.62 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 36 IATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 36 iaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
++.++++++++++.|++|++.|..
T Consensus 155 ~~p~~~~~~~~~~~e~~k~~~~~~ 178 (197)
T cd01492 155 LAPVAAVVGGILAQDVINALSKRE 178 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCC
Confidence 677888999999999999999864
No 22
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=60.55 E-value=10 Score=29.34 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 9 NLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 9 nlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
|-.++..+||-..- .+.+.-|.+.-- -.+.++++++++.|++|++.|..
T Consensus 131 n~~c~~~~ip~i~~-~~~G~~G~v~~~-~p~~~~~~~~~~~e~~k~l~~~~ 179 (198)
T cd01485 131 NDVCRKHHIPFISC-ATYGLIGYAFFD-FPIAAFLGGVVAQEAIKSISGKF 179 (198)
T ss_pred HHHHHHcCCCEEEE-EeecCEEEEEEc-hhHHHHHHHHHHHHHHHHHhCCC
Confidence 34466677764321 122333333211 15889999999999999999874
No 23
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=59.41 E-value=9.4 Score=32.29 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 34 PAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 34 PAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
+.+..+.++|+++++.|++|++.|..
T Consensus 189 gv~g~~~~~~g~~~a~e~ik~l~g~~ 214 (355)
T PRK05597 189 GVLGPVVGVVGSAMAMEALKLITGVG 214 (355)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 45778999999999999999999853
No 24
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=55.93 E-value=11 Score=33.03 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=26.8
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHcCCCChhhcccccc
Q psy7301 30 GKIIPAIATTTSVVAGLVCLELIKLAKGFTDIEKYKNGFV 69 (129)
Q Consensus 30 g~IIPAiaTTnA~Vagl~~~El~K~l~~~~~~e~~rn~f~ 69 (129)
|+=++ -++.|++.|.+..|.+|+++.. .-...|+|+
T Consensus 379 ~~~~~--~~~~~~~gg~~aqE~iK~~t~q--~vp~~n~~i 414 (425)
T cd01493 379 GRSLE--HNISAFMGGIAAQEVIKLITKQ--YVPIDNTFI 414 (425)
T ss_pred CCccc--chHHHHHhHHHHHHHHHHHhcc--ccccCCceE
Confidence 44444 7888999999999999999965 334456654
No 25
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=54.29 E-value=16 Score=30.87 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=22.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 33 IPAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 33 IPAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
.+.+.++.+++|++++.|++|++.|..
T Consensus 184 ~Gvl~p~v~~iaslqa~EalK~L~g~~ 210 (338)
T PRK12475 184 AGIIQPAVQIVVAYQVTEALKILVEDF 210 (338)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHhCCC
Confidence 344556778999999999999999863
No 26
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=53.73 E-value=13 Score=31.41 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 35 AIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 35 AiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
.+.+++++++++++.|++|++.|..
T Consensus 301 v~g~~~~~~~~~~a~e~~k~l~g~~ 325 (376)
T PRK08762 301 VLGVLPGVIGLLQATEAIKLLLGIG 325 (376)
T ss_pred cchhhHHHHHHHHHHHHHHHHhCCC
Confidence 4567889999999999999999863
No 27
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=52.54 E-value=9.8 Score=33.66 Aligned_cols=19 Identities=53% Similarity=0.849 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHhcCCCC
Q psy7301 1 MDFIVAASNLRAANYGITP 19 (129)
Q Consensus 1 ~~fi~aasnlRA~~y~I~~ 19 (129)
++||.++++|||+.|||+.
T Consensus 258 ~~fv~~~a~l~a~~~~~~~ 276 (435)
T cd01490 258 LDFVLAAANLYAEVYGIPG 276 (435)
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 3699999999999999986
No 28
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=50.74 E-value=16 Score=31.28 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.2
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 32 IIPAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 32 IIPAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
..+.+.++.++|+++++.|++|++.|..
T Consensus 203 ~~gvlg~~~~~ig~~~a~eaik~l~g~g 230 (370)
T PRK05600 203 TAGVLGATTAVIGALMATEAIKFLTGIG 230 (370)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 3456888999999999999999999863
No 29
>PRK08223 hypothetical protein; Validated
Probab=47.38 E-value=21 Score=29.91 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=24.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 33 IPAIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 33 IPAiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
.|....+..+++++++.|.+|++.|..
T Consensus 215 ~p~~g~~~g~~g~~~a~E~ik~l~g~g 241 (287)
T PRK08223 215 GPSTGLACQLCAGVVATEVLKILLGRG 241 (287)
T ss_pred CCCccchHHHHHHHHHHHHHHHHhCCC
Confidence 677788999999999999999999864
No 30
>PHA00736 hypothetical protein
Probab=41.91 E-value=41 Score=22.98 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=17.8
Q ss_pred hHHHHhcccccchhhhhHHHHHHHHHHHHHHHc
Q psy7301 24 TSKLIAGKIIPAIATTTSVVAGLVCLELIKLAK 56 (129)
Q Consensus 24 ~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~ 56 (129)
.++++||+| |||.|--|---.++....+-+..
T Consensus 28 ltykmagki-paii~giastf~lmfmdflplfw 59 (79)
T PHA00736 28 LTYKMAGKI-PAILVGIASTFTLMFMDFLPLFW 59 (79)
T ss_pred hHHHHhCCc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889985 77655444333444445544443
No 31
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=41.89 E-value=26 Score=30.04 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 35 AIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 35 AiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
.+..+.++|+++++.|++|++.|..
T Consensus 208 v~g~~~~~~g~~~a~e~ik~l~g~~ 232 (392)
T PRK07878 208 VLGVLCASIGSIMGTEAIKLITGIG 232 (392)
T ss_pred ccchHHHHHHHHHHHHHHHHHhCCC
Confidence 4677889999999999999999863
No 32
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=41.57 E-value=33 Score=28.96 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=20.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 35 AIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 35 AiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
.+..+.++|+++++.|++|++.|..
T Consensus 186 v~~p~~~~i~~~~a~ealk~l~g~~ 210 (339)
T PRK07688 186 IISPAVQIVASYQVTEALKLLVGDY 210 (339)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCC
Confidence 3555778999999999999999863
No 33
>PRK07411 hypothetical protein; Validated
Probab=37.65 E-value=42 Score=28.79 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHcCCC
Q psy7301 35 AIATTTSVVAGLVCLELIKLAKGFT 59 (129)
Q Consensus 35 AiaTTnA~Vagl~~~El~K~l~~~~ 59 (129)
-+.+|.++|++++..|++|++.|..
T Consensus 200 vlg~~~~~~g~~~a~eaik~l~g~~ 224 (390)
T PRK07411 200 VLGILPGIIGVIQATETIKIILGAG 224 (390)
T ss_pred cCcchHHHHHHHHHHHHHHHHcCCC
Confidence 4567889999999999999999864
No 34
>KOG2014|consensus
Probab=31.28 E-value=37 Score=29.34 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=29.6
Q ss_pred HhcccccchhhhhHHHHHHHHHHHHHHHcCCCChhhcccc
Q psy7301 28 IAGKIIPAIATTTSVVAGLVCLELIKLAKGFTDIEKYKNG 67 (129)
Q Consensus 28 iag~IIPAiaTTnA~Vagl~~~El~K~l~~~~~~e~~rn~ 67 (129)
..+.+-+-++-+-|+|.|.+..|.+|.+.+.. ...+|=
T Consensus 276 f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~--~Pl~Nf 313 (331)
T KOG2014|consen 276 FLSLIFTEFAPVCAVVGGILAQEVIKAISKKG--PPLNNF 313 (331)
T ss_pred HHHhcccccCchhhhhhhHhHHHHHHHhhcCC--Ccccce
Confidence 44566677788899999999999999999764 345553
No 35
>KOG3239|consensus
Probab=24.72 E-value=36 Score=27.20 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=27.3
Q ss_pred eEEEecceee---eeccCCchhH-hhhcCCcHHHHHhhhc
Q psy7301 91 TMLSQGVCML---YSYFMPPAKR-EERLNLPLVEVVRRSA 126 (129)
Q Consensus 91 ~~l~~g~~~l---Y~~~~~~~~~-~~rl~~~l~elv~~~~ 126 (129)
.||.||+|-| |..|+|.-++ +++|..-..||+..+.
T Consensus 11 ~vlYCGvCSlP~EYCEf~~~~~kCk~WL~~n~pdly~kL~ 50 (193)
T KOG3239|consen 11 SVLYCGVCSLPPEYCEFSGDLKKCKEWLEENHPDLYAKLY 50 (193)
T ss_pred ceEEeeccCCCHHHHHccccHHHHHHHHHhcChhHHHhhh
Confidence 7899999977 7778776543 6678888888876654
No 36
>KOG2016|consensus
Probab=23.94 E-value=65 Score=29.37 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHcCCCChhhcccccc
Q psy7301 38 TTTSVVAGLVCLELIKLAKGFTDIEKYKNGFV 69 (129)
Q Consensus 38 TTnA~Vagl~~~El~K~l~~~~~~e~~rn~f~ 69 (129)
+--|.|.|.+..|.+|+++.. .-...|+|+
T Consensus 481 ~VsAfiGGiaaQEvIKLiTkQ--yvPidNTFI 510 (523)
T KOG2016|consen 481 VVSAFIGGIAAQEVIKLITKQ--YVPIDNTFI 510 (523)
T ss_pred HHHHHHhhHHHHHHHHHHHhc--eecccceeE
Confidence 444899999999999999864 344568876
No 37
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.86 E-value=50 Score=27.64 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCCChhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHc
Q psy7301 9 NLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAK 56 (129)
Q Consensus 9 nlRA~~y~I~~~~~~~~k~iag~IIPAiaTTnA~Vagl~~~El~K~l~ 56 (129)
.+||+.-||+. +|||+.+--||+ .|+++++.||.-+
T Consensus 96 ~~~A~~~Gi~v-----------~vIh~~Si~~Aa-~g~tGL~~YkFG~ 131 (260)
T COG1798 96 RIEAKRRGIEV-----------RVIHGASIINAA-IGLTGLQNYKFGK 131 (260)
T ss_pred HHHHHHcCCcE-----------EEEcccHHHHHH-hhhhhhheeccCC
Confidence 35566666654 699998777664 4888899998754
No 38
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=21.37 E-value=88 Score=24.28 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.0
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHH
Q psy7301 31 KIIPAIATTTSVVAGLVCLELIKLA 55 (129)
Q Consensus 31 ~IIPAiaTTnA~Vagl~~~El~K~l 55 (129)
...+-++...+++|++++.|.+|++
T Consensus 176 ~~~g~~~p~v~~~a~~qa~~~l~~~ 200 (200)
T TIGR02354 176 QGLGLMAPRVQICAAHQANLVLELI 200 (200)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHhC
Confidence 3556688889999999999999974
No 39
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=20.69 E-value=1e+02 Score=28.87 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHHHHHHHcCC
Q psy7301 37 ATTTSVVAGLVCLELIKLAKGF 58 (129)
Q Consensus 37 aTTnA~Vagl~~~El~K~l~~~ 58 (129)
++|.||++++++.|++|++.|.
T Consensus 281 Pat~AmlAnviv~ElfK~ITg~ 302 (637)
T TIGR03693 281 LAGKAMLANIIVFELFKAAADD 302 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4478999999999999999874
Done!