RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7301
(129 letters)
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 165 bits (419), Expect = 9e-49
Identities = 82/158 (51%), Positives = 96/158 (60%), Gaps = 34/158 (21%)
Query: 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTD 60
++FI A SN RA NY I ADR +K IAG+IIPAIATTTS+V GLV LEL KL TD
Sbjct: 822 IEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTD 881
Query: 61 IEKYKNGFVNLALPFFGFSEPIAAPKDRA------------------------------- 89
IE+YKNGFVNLALPFFGFSEPIA+PK
Sbjct: 882 IEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDE 941
Query: 90 ---ITMLSQGVCMLYSYFMPPAKREERLNLPLVEVVRR 124
ITMLS GV +LY+ F PP K +ERLNLP+ ++V+
Sbjct: 942 GLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKL 979
Score = 27.1 bits (59), Expect = 1.9
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 1 MDFIVAASNLRAANYGITPAD-------RHTSKLIAGKIIPAIATTTSVVAGLVCLELIK 53
F+VA ++LRA NYGI D +I IIP ++ + +
Sbjct: 719 FHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDP 778
Query: 54 LAKGFTDIEKYKNGFVNLALPF 75
A ++ +L P
Sbjct: 779 NANAANGSDEIDQLVSSLPDPS 800
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 101 bits (252), Expect = 3e-26
Identities = 27/153 (17%), Positives = 44/153 (28%), Gaps = 36/153 (23%)
Query: 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTD 60
+ +I S RA+ Y I ++ + +IIPA+A+T +V+A + E+ K+A
Sbjct: 620 IQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYI 679
Query: 61 IEK---YKNGFVNLALPFFGFSEPIAAPK----------DRAIT---------------- 91
N L F P +
Sbjct: 680 PLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQM 739
Query: 92 -------MLSQGVCMLYSYFMPPAKREERLNLP 117
L LY + + R NL
Sbjct: 740 KSPAITATLEGKNRTLYLQSVTSIEERTRPNLS 772
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 96.0 bits (238), Expect = 2e-24
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTD 60
MDF+ +A+NLR + + R K +AG IIPAIATT +V+AGL+ LE +K+ G
Sbjct: 352 MDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSG--K 409
Query: 61 IEKYKNGFVNLALPFFGF---SEPIAAPKDR 88
I++ + F+N + P
Sbjct: 410 IDQCRTIFLNKQPNPRKKLLVPCALDPPNPN 440
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 90.0 bits (223), Expect = 2e-22
Identities = 27/153 (17%), Positives = 44/153 (28%), Gaps = 36/153 (23%)
Query: 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTD 60
+ +I S RA+ Y I ++ + +IIPA+A+T +V+A + E+ K+A
Sbjct: 249 IQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYI 308
Query: 61 IEK---YKNGFVNLALPFFGFSEPIAAPK----------DRAIT---------------- 91
N L F P +
Sbjct: 309 PLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQM 368
Query: 92 -------MLSQGVCMLYSYFMPPAKREERLNLP 117
L LY + + R NL
Sbjct: 369 KSPAITATLEGKNRTLYLQSVTSIEERTRPNLS 401
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine
half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Length = 276
Score = 65.0 bits (157), Expect = 8e-14
Identities = 29/33 (87%), Positives = 30/33 (90%)
Query: 1 MDFIVAASNLRAANYGITPADRHTSKLIAGKII 33
MDFIVAASNLRA NY I+PADRH SKLIAGKII
Sbjct: 244 MDFIVAASNLRAENYDISPADRHKSKLIAGKII 276
Score = 33.0 bits (74), Expect = 0.019
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 1 MDFIVAASNLRAANYGITPADRHTS-KLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFT 59
+D+++AA+NL A YG+T + + + + T S V V + ++ A
Sbjct: 147 LDYVMAAANLFAQTYGLTGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASV 206
Query: 60 DIEKYKNGFVNLALP 74
D + + L P
Sbjct: 207 DDSRLEELKATLPSP 221
>1oqv_A Toxin-coregulated pilus subunit; TCPA, type IV pilin, pilin, pilus
filament, forming protein, adhesin, fimbriae, cell
adhesion; 1.30A {Vibrio cholerae} SCOP: d.24.1.2 PDB:
3hrv_A
Length = 192
Score = 29.4 bits (65), Expect = 0.28
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 6 AASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTDIEKYK 65
AA +L + +T R PA A T+ A + L+ L K +D + K
Sbjct: 29 AAQSLNSIQVALTQTYRGLGNY------PATADATA--ASKLTSGLVSLGKISSD--EAK 78
Query: 66 NGFVNLALPFFGFSEPIAAPKDRAITM--LSQGVC 98
N F+ + F F AA K AI++ L+Q C
Sbjct: 79 NPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQC 113
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 29.0 bits (65), Expect = 0.43
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 89 AITMLSQGVCMLYS 102
A+ SQGV +
Sbjct: 765 AVVFTSQGVPFMQG 778
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 29.1 bits (65), Expect = 0.44
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 89 AITMLSQGVCMLYS 102
+ + +QG ++S
Sbjct: 800 LMVLTAQGTPFIHS 813
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 28.9 bits (65), Expect = 0.48
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 89 AITMLSQGVCMLYS 102
+ + +QG ++S
Sbjct: 493 LMVLTAQGTPFIHS 506
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.49
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 41 SVVAGLVCLELIKLAKGFTDIEKYKNGFVNLALPFFGFSEPI---AAPKDRAITMLS--- 94
++ A L+ L K I+ Y + PF S A + A +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 95 QGVCMLYSYFMPPAKREERLNLPLVEVVRRSAPIV 129
QG YF EE L ++ + +V
Sbjct: 163 QGN--TDDYF------EE-----LRDLYQTYHVLV 184
Score = 27.3 bits (60), Expect = 1.6
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 22/86 (25%)
Query: 10 LRAANYGITPADRHTS-KLIAGKIIPAIATTTSVVAG----L--VCLELIKLAKGFTDIE 62
+ N PA + L+ G VV+G L + L L K K + ++
Sbjct: 353 VNKTN-SHLPAGKQVEISLVNGA-------KNLVVSGPPQSLYGLNLTLRKA-KAPSGLD 403
Query: 63 KYKNGFVNLALPF---FGFSEPIAAP 85
+ + F L F F P+A+P
Sbjct: 404 QSRIPFSERKLKFSNRFL---PVASP 426
Score = 25.4 bits (55), Expect = 8.8
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 2 DFIVAASNLRAANYGI-TPAD-RHTSKLIAGKIIPAIAT 38
+ A +++ Y +D R S I+ +I+ I
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP:
b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A*
2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Length = 1083
Score = 28.9 bits (64), Expect = 0.54
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 89 AITMLSQGVCMLYS 102
A ML QG+
Sbjct: 864 ATVMLGQGIAFDQQ 877
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
cell WALL, peptidoglycan-anchor, secreted; 2.10A
{Streptococcus agalactiae COH1} PDB: 3fax_A*
Length = 877
Score = 28.3 bits (63), Expect = 0.73
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 89 AITMLSQGVCMLYS 102
+ + SQG ++S
Sbjct: 606 VMILTSQGTAFIHS 619
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 28.5 bits (64), Expect = 0.73
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 89 AITMLSQGVCMLYS 102
AI +L+QGV ++S
Sbjct: 554 AIILLAQGVPFIHS 567
>3s0t_A CFA/III pilin; fiber-forming protein, pilus, colonization factor,
bacterial cell adhesion; HET: GOL; 1.26A {Escherichia
coli}
Length = 184
Score = 27.3 bits (59), Expect = 1.4
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 6 AASNLRAANYGITPADRHTSK--LIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTDIEK 63
+N + A + K + + + G+ +L++L K D +
Sbjct: 12 LVTNTNTIRVAMKDAYQRDGKYPDYQAPLSLTADSIKTDSTGIAVAQLVQLGKLTPD--E 69
Query: 64 YKNGFVNLALPFFGFSEPIAAPKDRAITM----LSQGVC 98
+NG + G + ++ M LSQ C
Sbjct: 70 ARNGISGDYIGIGGAITSSGSTINKGFAMELNGLSQEQC 108
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase
family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A*
2y5e_A* 2x4b_A
Length = 884
Score = 26.3 bits (58), Expect = 3.2
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 89 AITMLSQGVCMLYS 102
++ LSQG+ ++
Sbjct: 671 SMMALSQGIPFFHA 684
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 4.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 26 KLIAGKIIPAIATTTSV 42
KL A PA+A ++
Sbjct: 30 KLYADDSAPALAIKATM 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.399
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,983,910
Number of extensions: 110900
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 25
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.0 bits)