RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7301
         (129 letters)



>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 426

 Score = 65.1 bits (158), Expect = 4e-14
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 1   MDFIVAASNLRAANYGITPADRHTSKLIAGKIIPAIATTTSVVAGLVCLELIKLAKGFTD 60
           + +I   S  RA+ Y I       ++ +  +IIPA+A+T +V+A +   E+ K+A     
Sbjct: 246 IQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYI 305

Query: 61  IEKYKNGFVNLALPFFGFSEPIAAPKD 87
                    N     + ++      ++
Sbjct: 306 PLNNYL-VFNDVDGLYTYTFEAERKEN 331


>d1oqva_ d.24.1.2 (A:) Toxin-coregulated pilus subunit TcpA
          {Vibrio cholerae [TaxId: 666]}
          Length = 171

 Score = 26.0 bits (57), Expect = 1.0
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 37 ATTTSVVAGLVCLELIKLAKGFTDIEKYKNGFVNLALPFFGFSEPIAAPKDRAITM--LS 94
          AT  +  A  +   L+ L K  +D  + KN F+   +  F F    AA K  AI++  L+
Sbjct: 31 ATADATAASKLTSGLVSLGKISSD--EAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLT 88

Query: 95 QGVC 98
          Q  C
Sbjct: 89 QAQC 92


>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
          (RecD) {Escherichia coli [TaxId: 562]}
          Length = 359

 Score = 24.9 bits (53), Expect = 3.3
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 17 ITPADRHTSKLIAGKIIPAIATTTSVV-----AGLVCLELIKLAK 56
          + P D   +  +AG   PA+    +++      G VCL L +L  
Sbjct: 15 LRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 463,594
Number of extensions: 18759
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 5
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (22.7 bits)