RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7302
(741 letters)
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 284 bits (728), Expect = 4e-89
Identities = 89/302 (29%), Positives = 136/302 (45%), Gaps = 18/302 (5%)
Query: 392 LRTQEFRQKRPPFQCNICLFAASYPTYSTTSTTVRPAVYNKYVCGVKGTARERGARVVGG 451
+R + C C + + T V CG++ R ++ G
Sbjct: 77 IRENANECESYLDVC--CGLPEGGVLPTPSPTPPVVPVLKPSFCGIR-NERGLDFKITGQ 133
Query: 452 -EDADPAEWCWQVALI-------NSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYV 503
+A+ E+ W VA++ + Q +CGG+LI VLT AHCV + + DA+ +
Sbjct: 134 TNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKI 193
Query: 504 RVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLP 563
R G+ D + Q ++ IH N N +T+ ND+ALL L D + +CLP
Sbjct: 194 RAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLP 253
Query: 564 ARGVNHAAGKRCTVTGYGY--MGEAGPIPLRVREAEIPIVSDTECIRKI-NAVTEKIFIL 620
+ C +G+G G +++ ++P V +C + N F+L
Sbjct: 254 QQSQIF-DSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVL 312
Query: 621 PASSFCAGGEEGNDACQGDGGGPLVCQD---DGFYELAGLVSWGFGCGRQDVPGVYVKVS 677
+ CAGGE+G D C GDGG PL C D Y G+V+WG GCG ++VPGVY V+
Sbjct: 313 DQTFVCAGGEQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVA 372
Query: 678 SF 679
F
Sbjct: 373 HF 374
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 255 bits (653), Expect = 5e-80
Identities = 92/254 (36%), Positives = 132/254 (51%), Gaps = 22/254 (8%)
Query: 435 CGVKGTARERGARVVGGEDADPAEWCWQVAL---INSLNQYLCGGALIGTQWVLTAAHCV 491
CG ARVVGGEDA P W WQ++L ++ ++ CGG LI VLTAAHC+
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 492 TNIVRSGDAVY-VRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQ 550
+N Y V +G ++L + G+ + V T ++H NS + NDIAL+KL
Sbjct: 61 SN-----TLTYRVALGKNNLEVE-DEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAET 114
Query: 551 AELKDGVCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK- 609
EL D + + CLP+ G C VTG+G + GPI +++ P+V C ++
Sbjct: 115 VELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRD 174
Query: 610 --INAVTEKIFILPASSFCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFG--CG 665
V E + CAGG+ AC GD GGPL CQ DG +++ G+VS+G G C
Sbjct: 175 WWGTTVKE-------TMVCAGGDGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCN 227
Query: 666 RQDVPGVYVKVSSF 679
P V+ +VS++
Sbjct: 228 TFKKPTVFTRVSAY 241
Score = 28.7 bits (65), Expect = 5.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 353 CGVKGTARERGARVVGGEDA 372
CG ARVVGGEDA
Sbjct: 1 CGAPIFQPNLSARVVGGEDA 20
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 254 bits (651), Expect = 6e-80
Identities = 80/237 (33%), Positives = 114/237 (48%), Gaps = 18/237 (7%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG++ E WQ LIN N+ CGG ++ ++LTAAHC+ R VRVGD
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKR----FKVRVGD 56
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
+ ++ G V H+ +T D DIA+L+L + V CLP R
Sbjct: 57 RNTEQE--EGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW 114
Query: 568 NHA---AGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPAS 623
+ K V+G+G E G R++ E+P V C +T+ +F
Sbjct: 115 AESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF----- 169
Query: 624 SFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CAG + DACQGD GGP V + Y + G+VSWG GC R+ G+Y KV++F
Sbjct: 170 --CAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 254 bits (650), Expect = 7e-80
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 12/235 (5%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG DA W W V L ++ LCG +L+ + W+++AAHCV +G
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYD-DRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGL 59
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
H + SP + I+ ++N + DNDIA++ L + D + + LP
Sbjct: 60 HMKS-NLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQ 118
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKI--NAVTEKIFILPASSF 625
G+ C++ G+G + G ++EA++P++S+ C +++ +TE +
Sbjct: 119 VFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITE-------NMI 171
Query: 626 CAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CAG EEG D+CQGD GGPL+CQ++ + LAG+ S+G+ C + PGVY +VS F
Sbjct: 172 CAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRF 226
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 253 bits (648), Expect = 3e-79
Identities = 82/236 (34%), Positives = 122/236 (51%), Gaps = 9/236 (3%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG+ E WQV L+ + LCGG LI T WV++AAHC I ++ + +G+
Sbjct: 1 IVGGKVCPKGECPWQVLLLVN-GAQLCGGTLINTIWVVSAAHCFDKI-KNWRNLIAVLGE 58
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
HDL+ Q+ RVA I + T ++DIALL+LH L D V +CLP R
Sbjct: 59 HDLSEH--DGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTF 116
Query: 568 NH---AAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASS 624
+ A + V+G+G + + G L + +P + +C+++ V + I
Sbjct: 117 SERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITE-YM 175
Query: 625 FCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
FCAG +G+ D+C+GD GGP G + L G+VSWG GC GVY +VS +
Sbjct: 176 FCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQY 231
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 250 bits (640), Expect = 3e-78
Identities = 88/249 (35%), Positives = 127/249 (51%), Gaps = 19/249 (7%)
Query: 435 CGVKGTA--RERGARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVT 492
CGV +R+V GE+A P W WQV+L + + CGG+LI WV+TAAHC
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCG- 59
Query: 493 NIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAE 552
+ V G+ D S Q L++A + + +NS T++NDI LLKL A
Sbjct: 60 ----VTTSDVVVAGEFDQGSS--SEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAAS 113
Query: 553 LKDGVCLVCLPARGVNHAAGKRCTVTGYGY-MGEAGPIPLRVREAEIPIVSDTECIRKIN 611
V VCLP+ + AAG C TG+G P R+++A +P++S+T C +
Sbjct: 114 FSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWG 173
Query: 612 -AVTEKIFILPASSFCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVP 670
+ + + CAG G +C GD GGPLVC+ +G + L G+VSWG P
Sbjct: 174 TKIKDAMI-------CAG-ASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTP 225
Query: 671 GVYVKVSSF 679
GVY +V++
Sbjct: 226 GVYARVTAL 234
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 249 bits (638), Expect = 4e-78
Identities = 81/239 (33%), Positives = 118/239 (49%), Gaps = 18/239 (7%)
Query: 448 VVGGEDADPAEWCWQVAL---INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVY-V 503
+VGG DA E+ +Q++ + + CG ++ + +TA HCV + +
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 504 RVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLP 563
G+ D++ Q + V+ +H N + LDNDI+LLKL G D V + LP
Sbjct: 61 VAGELDMSVN--EGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALP 118
Query: 564 ARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK--INAVTEKIFILP 621
+ H A VTG+G E G P +++ +P+VSD +C + + +
Sbjct: 119 EQ--GHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILD------ 170
Query: 622 ASSFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
S CAG EG D+CQGD GGPL D G LAG+VSWG+GC R PGVY +VS
Sbjct: 171 -SMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYH 228
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 248 bits (635), Expect = 1e-77
Identities = 86/237 (36%), Positives = 131/237 (55%), Gaps = 15/237 (6%)
Query: 448 VVGGEDADPAEWCWQVAL--INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRV 505
+VGG ++ EW WQV+L + ++LCGG+LIG QWVLTAAHC + D +
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQ-DVWRIYS 59
Query: 506 GDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPAR 565
G +L+ + ++ IH N+ ++DIAL+KL E + + LP++
Sbjct: 60 GILELSDI--TKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSK 117
Query: 566 GVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK--INAVTEKIFILPAS 623
G C VTG+G+ E G I +++ IP+V++ EC ++ +T+
Sbjct: 118 GDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQ-------R 170
Query: 624 SFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CAG +EG DAC+GD GGPLVC+ +G + L G+ SWG GC R++ PGVY KV+ +
Sbjct: 171 MVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEY 227
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 246 bits (631), Expect = 5e-77
Identities = 80/238 (33%), Positives = 119/238 (50%), Gaps = 20/238 (8%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
VVGGEDA P ++ WQV L N CGG+++ +W++TAAHCV +G + V G+
Sbjct: 1 VVGGEDAKPGQFPWQVVL-NGKVDAFCGGSIVNEKWIVTAAHCV----ETGVKITVVAGE 55
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNS--QTLDNDIALLKLHGQAELKDGVCLVCLPAR 565
H++ Q V HHN N+ T ++DIALL+L L V +C+ +
Sbjct: 56 HNIEET--EHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADK 113
Query: 566 GVNH--AAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPA 622
+ V+G+G + G L ++ +P+V C+R +T +F
Sbjct: 114 EYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMF---- 169
Query: 623 SSFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CAG EG D+CQGD GGP V + +G L G++SWG C + G+Y KVS +
Sbjct: 170 ---CAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRY 224
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 246 bits (631), Expect = 6e-77
Identities = 82/237 (34%), Positives = 119/237 (50%), Gaps = 15/237 (6%)
Query: 448 VVGGEDADPAEWCWQVAL--INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRV 505
+VGG + EW WQV L + ++LCGG++IG QW+LTAAHC V S + V
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYG-VESPKILRVYS 59
Query: 506 GDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPAR 565
G + + V IH + DIALLKL D + LP++
Sbjct: 60 GILNQSEI--KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSK 117
Query: 566 GVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKI--NAVTEKIFILPAS 623
G + C VTG+GY I +++A+IP+V++ EC ++ + +T
Sbjct: 118 GERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITH-------K 170
Query: 624 SFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CAG EG DAC+GD GGPL C+ + + L G+ SWG GC +++ PGVY V +
Sbjct: 171 MICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEY 227
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 244 bits (626), Expect = 4e-76
Identities = 86/243 (35%), Positives = 119/243 (48%), Gaps = 24/243 (9%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++ G+ + WQV L++S + CG LI WVLTAAHC+ + + VR+G+
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKK----LLVRLGE 56
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
+DL R L + ++H N++ T DNDIALL L A L + +CLP G+
Sbjct: 57 YDLRRW--EKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGL 114
Query: 568 NHA----AGKRCTVTGYGYMGEAG-----PIPLRVREAEIPIVSDTECIRK-INAVTEKI 617
AG+ VTG+GY + +IP+V EC N V+E
Sbjct: 115 AERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSE-- 172
Query: 618 FILPASSFCAG-GEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKV 676
+ CAG + DAC+GD GGP+V G + L GLVSWG GCG GVY KV
Sbjct: 173 -----NMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKV 227
Query: 677 SSF 679
S +
Sbjct: 228 SRY 230
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 244 bits (625), Expect = 5e-76
Identities = 85/239 (35%), Positives = 119/239 (49%), Gaps = 15/239 (6%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVY----V 503
VVGG DAD EW WQV+L ++CG +LI W+++AAHC + +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 504 RVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLP 563
+G HD + + +PG Q R+ H N T D DIALL+L AE V + LP
Sbjct: 61 FLGLHDQS-QRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLP 119
Query: 564 ARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKIN-AVTEKIFILPA 622
AGK VTG+G+ G L +++ EI +++ T C + +T
Sbjct: 120 DASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITP------- 172
Query: 623 SSFCAGGEEGN-DACQGDGGGPLVCQD-DGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
C G G D+CQGD GGPL + DG AG+VSWG GC +++ PGVY ++ F
Sbjct: 173 RMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLF 231
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 244 bits (625), Expect = 1e-75
Identities = 78/264 (29%), Positives = 128/264 (48%), Gaps = 26/264 (9%)
Query: 434 VCGVKGTARERGARVVGGEDADPAEWCWQVALI----NSLNQYLCGGALIGTQWVLTAAH 489
CG + +++ G+D P E+ W + ++ Q+ CGG+LI ++++TAAH
Sbjct: 13 DCGY----QVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAH 68
Query: 490 CVTN--IVRSGDAVYVRVGDHDLT---------RKYGSPGAQTLRVATTYIHHNHNSQTL 538
CV + G VR+G+ + R L + T H ++ +
Sbjct: 69 CVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSK 128
Query: 539 D--NDIALLKLHGQAELKDGVCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREA 596
D +DIAL++L+ Q E + + VCLP G+R TV G+G E G ++
Sbjct: 129 DRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT-ETGQYSTIKQKL 187
Query: 597 EIPIVSDTECIRKINAVTEKIFILPASSFCAGGEEGNDACQGDGGGPLVCQD-DGFYELA 655
+P+V +C + A ++ +S CAGGE+ D+C GD GGPL+ + + + L
Sbjct: 188 AVPVVHAEQCAKTFGAAGVRV---RSSQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLE 244
Query: 656 GLVSWGFGCGRQDVPGVYVKVSSF 679
GLVS+G CG + PG+Y KV +
Sbjct: 245 GLVSFGATCGTEGWPGIYTKVGKY 268
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 242 bits (621), Expect = 2e-75
Identities = 80/239 (33%), Positives = 122/239 (51%), Gaps = 13/239 (5%)
Query: 448 VVGGEDADPAEWCWQVAL--INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRV 505
+VGG++A ++W WQV+L + + CGG+LI QWVLTAAHCV V+ + V++
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 506 GDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPAR 565
+ L Q L V+ +H DIALL+L + V V LP
Sbjct: 61 REQHL-----YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPA 115
Query: 566 GVNHAAGKRCTVTGYGYMGEAGPI--PLRVREAEIPIVSDTEC---IRKINAVTEKIFIL 620
G C VTG+G + P+ P +++ ++PI+ + C + + I+
Sbjct: 116 SETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRII 175
Query: 621 PASSFCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CAG D+CQGD GGPLVC+ +G + AG+VSWG GC + + PG+Y +V+ +
Sbjct: 176 RDDMLCAG-NSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYY 233
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 242 bits (620), Expect = 3e-75
Identities = 76/247 (30%), Positives = 111/247 (44%), Gaps = 23/247 (9%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVY----- 502
+ G A W L + Q CGG+L+G+ W++TAAHC+ + D
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 503 -------VRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKD 555
+ +G H R Q L V T +H ++ T +ND+AL++L L
Sbjct: 61 LSPSDFKIILGKHWRLRS--DENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNA 118
Query: 556 GVCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTE 615
V +CLP G V+G+G P + E EIPIV + C + + +
Sbjct: 119 FVMPICLPEG--PQQEGAMVIVSGWGKQFL-QRFPETLMEIEIPIVDHSTCQKAYAPLKK 175
Query: 616 KIFILPASSFCAGGEEGN-DACQGDGGGPLVC--QDDGFYELAGLVSWGFGCGRQDVPGV 672
K+ CAG +EG DAC GD GGP+V ++ G + L G VSWG CG++D GV
Sbjct: 176 KV---TRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGV 232
Query: 673 YVKVSSF 679
Y +
Sbjct: 233 YSYIHHN 239
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 241 bits (617), Expect = 6e-75
Identities = 78/243 (32%), Positives = 108/243 (44%), Gaps = 23/243 (9%)
Query: 448 VVGGEDADPAEWCWQVAL---INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVR 504
VVGG +A W Q++L S + CGG LI WV+TAAHCV V
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCV----DRELTFRVV 56
Query: 505 VGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTL--DNDIALLKLHGQAELKDGVCLVCL 562
VG+H+L + Q + V +H N+ + DIALL+L L V L L
Sbjct: 57 VGEHNLN--QNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVL 114
Query: 563 PARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKI---NAVTEKIFI 619
P G A C +TG+G G + +++A +P V C + V
Sbjct: 115 PRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKN---- 170
Query: 620 LPASSFCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWG--FGCGRQDVPGVYVKVS 677
S CAGG+ CQGD GGPL C +G Y + G+ S+ GC P V+ +VS
Sbjct: 171 ---SMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVS 227
Query: 678 SFN 680
++
Sbjct: 228 AYI 230
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 240 bits (615), Expect = 1e-74
Identities = 89/247 (36%), Positives = 120/247 (48%), Gaps = 16/247 (6%)
Query: 435 CGVKGTARER-GARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTN 493
CG ++ RVVGG A P W WQV+L + CGG LI +WVLTAAHC+
Sbjct: 4 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63
Query: 494 IVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAEL 553
R V +G H P Q + V+ ++ DIALLKL A +
Sbjct: 64 SPRPSS-YKVILGAHQEVNL--EPHVQEIEVSRLFLEPT------RKDIALLKLSSPAVI 114
Query: 554 KDGVCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAV 613
D V CLP+ A C +TG+G + ++EA++P++ + C N
Sbjct: 115 TDKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPVIENKVC----NRY 169
Query: 614 TEKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGV 672
+ ++ CAG G D+CQGD GGPLVC + Y L G+ SWG GC R + PGV
Sbjct: 170 EFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGV 229
Query: 673 YVKVSSF 679
YV+VS F
Sbjct: 230 YVRVSRF 236
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 241 bits (618), Expect = 2e-74
Identities = 80/264 (30%), Positives = 121/264 (45%), Gaps = 27/264 (10%)
Query: 431 NKYVCGVKGTARERGARVVGGEDADPAEWCWQVAL----INSLNQYLCGGALIGTQWVLT 486
K+ CG K +++GGE W A+ Y+CGG+L+ WV++
Sbjct: 9 LKFQCGQKTLRPR--FKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVIS 66
Query: 487 AAHCVTNIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTL--DNDIAL 544
A HC + + D V +G L + G V +H ++++ TL NDIAL
Sbjct: 67 ATHCFIDYPKKED-YIVYLGRSRLNSN--TQGEMKFEVENLILHKDYSADTLAHHNDIAL 123
Query: 545 LKL----HGQAELKDGVCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPI-PLRVREAEIP 599
LK+ A+ + +CLP+ + G C +TG+G + P +++ +
Sbjct: 124 LKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK 183
Query: 600 IVSDTECIRKI---NAVTEKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQDDGFYELA 655
++S EC + + VT CA + D+CQGD GGPLVC G L
Sbjct: 184 LISHRECQQPHYYGSEVTT-------KMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLT 236
Query: 656 GLVSWGFGCGRQDVPGVYVKVSSF 679
G+VSWG GC +D PGVY +VS F
Sbjct: 237 GIVSWGRGCALKDKPGVYTRVSHF 260
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 239 bits (613), Expect = 3e-74
Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 21/240 (8%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQY-LCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVG 506
+VGG +A P E+ WQV++ + CGG++I +WV+ AAHC+ + V + VG
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPA--LVSLVVG 58
Query: 507 DHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARG 566
+HD + S QT V + +++ N++ TL+ND++++K V +C P
Sbjct: 59 EHDSSA--ASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPA 116
Query: 567 VNHAAGKRCTVTGYGYMGEAGP-IPLRVREAEIPIVSDTECIRK--INAVTEKIFILPAS 623
N ++ +G+G + G P +R + I ++ C + + +
Sbjct: 117 -NDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYD-------D 168
Query: 624 SFCAG---GEEGNDACQGDGGGPLVCQD-DGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CA G D+CQGD GGPL +D G + L G+VSWG GC PGVY +V
Sbjct: 169 MICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFH 227
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 239 bits (613), Expect = 3e-74
Identities = 84/252 (33%), Positives = 117/252 (46%), Gaps = 30/252 (11%)
Query: 448 VVGGEDADPAEWCWQVAL-----INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVY 502
+ GG AD A WQ A+ + ++LCGG LI + W+L+AAHC +
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHH-LT 59
Query: 503 VRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHG----QAELKDGVC 558
V +G Q V +H + T DNDIALL+L A+ V
Sbjct: 60 VILGRTYRVVP--GEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVR 117
Query: 559 LVCLPARGVNHAAGKRCTVTGYGYMGEAGPI-PLRVREAEIPIVSDTECIRKI---NAVT 614
VCLP + C ++GYG P R++EA + + + C + VT
Sbjct: 118 TVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVT 177
Query: 615 EKIFILPASSFCAGGEEGN-------DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQ 667
+ + CAG DACQGD GGPLVC +DG L G++SWG GCG++
Sbjct: 178 D-------NMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQK 230
Query: 668 DVPGVYVKVSSF 679
DVPGVY KV+++
Sbjct: 231 DVPGVYTKVTNY 242
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 239 bits (613), Expect = 5e-74
Identities = 81/237 (34%), Positives = 123/237 (51%), Gaps = 9/237 (3%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+ GG A +W WQV++ ++CGG+L+ QWVL+AAHC + V++G
Sbjct: 1 ITGGSSAVAGQWPWQVSI-TYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEA-YEVKLGA 58
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
H L S A+ + H ++ + DIALL+L + + LPA
Sbjct: 59 HQLDSY--SEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQA 116
Query: 568 NHAAGKRCTVTGYGYMGEAGPI--PLRVREAEIPIVSDTEC--IRKINAVTEKIFILPAS 623
+ G CTVTG+G++ + + P +++ E+P++S C + I+A E+ +
Sbjct: 117 SFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQED 176
Query: 624 SFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CAG EG DACQGD GGPL C +G + L G+VSWG CG ++ PGVY SS+
Sbjct: 177 MVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSY 233
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 238 bits (609), Expect = 7e-74
Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 22/235 (9%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG + E WQ LIN N+ CGG ++ ++LTAAHC + VRVGD
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHC----LYQAKRFKVRVGD 56
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
+ ++ G V H+ +T D DIA+L+L + V LP
Sbjct: 57 RNTEQE--EGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPP 114
Query: 568 NHAAGKRCTVTGYGYMGEAG-PIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPASSF 625
A G +C ++G+G +G P ++ + P++S +C +T + F
Sbjct: 115 --ATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNM-------F 165
Query: 626 CAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
C G EG D+CQGD GGP+VC +L G+VSWG GC +++ PGVY KV ++
Sbjct: 166 CVGFLEGGKDSCQGDSGGPVVCN----GQLQGVVSWGDGCAQKNKPGVYTKVYNY 216
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 237 bits (608), Expect = 8e-74
Identities = 72/235 (30%), Positives = 104/235 (44%), Gaps = 16/235 (6%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVY-VRVG 506
+VGG + + EW WQ +L + CG LI W+++AAHC T + G
Sbjct: 1 IVGGTEVEEGEWPWQASLQWD-GSHRCGATLINATWLVSAAHCFTTYKNPAR--WTASFG 57
Query: 507 DHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARG 566
P + +H + + D DI+L +L + V VCLP
Sbjct: 58 VTI------KPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDAS 111
Query: 567 VNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSFC 626
G VTG+G + G +R+A++ ++ T C N + C
Sbjct: 112 YEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTC----NEPQAYNDAITPRMLC 167
Query: 627 AGGEEGN-DACQGDGGGPLVCQD-DGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
AG EG DACQGD GGPLV D + LAG+VSWG C + + PGVY +V++
Sbjct: 168 AGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTAL 222
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 238 bits (609), Expect = 9e-74
Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 15/239 (6%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+ GG+ A P ++ WQV + L GAL+ WVLTAAH V A+ +R+G
Sbjct: 1 IYGGQKAKPGDFPWQVLI---LGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGT 57
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQT-LDNDIALLKLHGQAELKDGVCLVCLPARG 566
SP +IH + DNDIAL+KL+ + + + +CLP +
Sbjct: 58 LKRL----SPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKE 113
Query: 567 VNH--AAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASS 624
T +G+G + G + + +IPIV +C + A+
Sbjct: 114 AESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM 172
Query: 625 FCAGGEEGN-DACQGDGGGPLVCQD--DGFYELAGLVSWG-FGCGRQDVPGVYVKVSSF 679
CAG E G D+C+GD GG LV D + + G+VSWG CG GVY KV ++
Sbjct: 173 LCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINY 231
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 236 bits (605), Expect = 3e-73
Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 21/236 (8%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++GG +A+ + ++ +LCGG L+ QWVL+AAHC+ + + V V +G
Sbjct: 1 ILGGREAEAHARPYMASV-QLNGAHLCGGVLVAEQWVLSAAHCLED--AADGKVQVLLGA 57
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
H L++ P + V H + T+D+D+ LL+L +A L V +
Sbjct: 58 HSLSQP--EPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDR 115
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKI---NAVTEKIFILPASS 624
+ A G C V G+G + AG P ++ +P++ C R+ A+TE++
Sbjct: 116 DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERL------- 168
Query: 625 FCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFG-CGRQDVPGVYVKVSSF 679
CA D+C+GD GGPLVC L G+V+ G CG + PG+Y +V+S+
Sbjct: 169 MCA-ESNRRDSCKGDAGGPLVCG----GVLEGVVTSGSRVCGNRKKPGIYTRVASY 219
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 238 bits (609), Expect = 3e-73
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 23/271 (8%)
Query: 420 TTSTTVRPAVYNKYVCGVKGTARER-GARVVGGEDADPAEWCWQVALINSLNQYLCGGAL 478
+T PA + CG + R R++GG + P W A+ + C G+L
Sbjct: 7 LLATLPEPASPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI--YIGDSFCAGSL 64
Query: 479 IGTQWVLTAAHCVTNIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNS-QT 537
+ T WV++AAHC ++ V V +G H R + QT + + ++
Sbjct: 65 VHTCWVVSAAHCFSHSPPRDS-VSVVLGQHFFNRT--TDVTQTFGIEKYIPYTLYSVFNP 121
Query: 538 LDNDIALLKL----HGQAELKDGVCLVCLPARGVNHAAGKRCTVTGYGYMGE-AGPIPLR 592
D+D+ L++L A V +CLP G AG +C + G+G++ E
Sbjct: 122 SDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSS 181
Query: 593 VREAEIPIVSDTECIRKI---NAVTEKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQD 648
+REA +P+V+D +C ++ + CAG + DACQGD GGPL C+
Sbjct: 182 LREALVPLVADHKCSSPEVYGADISPNML-------CAGYFDCKSDACQGDSGGPLACEK 234
Query: 649 DGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
+G L G++SWG GCGR PGVY +V+++
Sbjct: 235 NGVAYLYGIISWGDGCGRLHKPGVYTRVANY 265
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 236 bits (605), Expect = 3e-73
Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 17/241 (7%)
Query: 448 VVGGEDADPAEWCWQVAL--INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRV 505
V+GG +A P E+ WQ++ + + CG +L+ + L+A+HCV ++ + + V
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNN--IRVIA 58
Query: 506 GDHDLTRKYGSPGAQTLRVATTYIHHNHNSQT--LDNDIALLKLHGQAELKDGVCLVCLP 563
G + G QT V + +H N+ + T NDIA+L L L + LP
Sbjct: 59 GLWQQ---SDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLP 115
Query: 564 ARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPAS 623
A N AG C ++G+G +P ++++ IP+++ +C + V + +
Sbjct: 116 ANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGG--ANIWDN 173
Query: 624 SFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSW----GFGCGRQDVPGVYVKVSS 678
C GN AC GD GGPL C DG + G+ SW G G D P VY +VS+
Sbjct: 174 HICVQDPAGNTGACNGDSGGPLNCP-DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSA 232
Query: 679 F 679
+
Sbjct: 233 Y 233
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 235 bits (603), Expect = 3e-73
Identities = 73/234 (31%), Positives = 97/234 (41%), Gaps = 23/234 (9%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
VVGG A E+ + V L CGGAL VLTAAHCV+ + ++ G
Sbjct: 1 VVGGTRAAQGEFPFMVRL-----SMGCGGALYAQDIVLTAAHCVSG-SGNNTSITATGGV 54
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
DL S A +R +T D AL+KL A
Sbjct: 55 VDLQ----SSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQP-----TLKIATT- 104
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSFCA 627
TV G+G E G + +A +P VSD C + + I + CA
Sbjct: 105 TAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAAC----RSSSSFILVAN-EMICA 159
Query: 628 GGEEGN-DACQGDGGGPLVCQD-DGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
G + D CQGD GGP+ +D + G+VSWG GC R+ GVY +VS+F
Sbjct: 160 GYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTF 213
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 240 bits (615), Expect = 6e-73
Identities = 97/252 (38%), Positives = 117/252 (46%), Gaps = 20/252 (7%)
Query: 439 GTARERGARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSG 498
G + R+VGG D W WQV+L +LCGG+L+ WVLTAAHC R
Sbjct: 109 GRRKLPVDRIVGGRDTSLGRWPWQVSL-RYDGAHLCGGSLLSGDWVLTAAHCFPERNRVL 167
Query: 499 DAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHN------HNSQTLDNDIALLKLHGQAE 552
V G SP L V H NS+ NDIAL+ L
Sbjct: 168 SRWRVFAGAVAQA----SPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLP 223
Query: 553 LKDGVCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINA 612
L + + VCLPA G GK CTVTG+G G ++EA +PI+S+ C N
Sbjct: 224 LTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVC----NG 279
Query: 613 VTEKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQD----DGFYELAGLVSWGFGCGRQ 667
+ FCAG EG DACQGD GGP VC+D + L G+VSWG GC
Sbjct: 280 ADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALA 339
Query: 668 DVPGVYVKVSSF 679
PGVY KVS F
Sbjct: 340 QKPGVYTKVSDF 351
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 236 bits (603), Expect = 7e-73
Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 25/247 (10%)
Query: 448 VVGGEDADPAEWCWQVAL----INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYV 503
++GGE W A+ Y+CGG+LI WV++A HC + + D V
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKED-YIV 59
Query: 504 RVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTL--DNDIALLKL----HGQAELKDGV 557
+G L + G V +H ++++ TL NDIALLK+ A+ +
Sbjct: 60 YLGRSRLNSN--TQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 558 CLVCLPARGVNHAAGKRCTVTGYGYMGEAGPI-PLRVREAEIPIVSDTECIRKI---NAV 613
+ LP+ + G C +TG+G + P +++ + ++S EC + + V
Sbjct: 118 QTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 614 TEKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGV 672
T CA + D+CQGD GGPLVC G L G+VSWG GC +D PGV
Sbjct: 178 TT-------KMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGV 230
Query: 673 YVKVSSF 679
Y +VS F
Sbjct: 231 YTRVSHF 237
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 239 bits (611), Expect = 7e-73
Identities = 77/261 (29%), Positives = 116/261 (44%), Gaps = 28/261 (10%)
Query: 434 VCGVKGTARERGARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTN 493
VCGV E R++GG DAD + WQV + GGALI WVLTAAH V
Sbjct: 69 VCGVPREPFEEKQRIIGGSDADIKNFPWQV----FFDNPWAGGALINEYWVLTAAHVVEG 124
Query: 494 IVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHN-------SQTLDNDIALLK 546
+ VG + + ++ L +IH DNDIAL++
Sbjct: 125 NREP----TMYVGSTSVQTSRLAK-SKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVR 179
Query: 547 LHGQAELKDGVCLVCLPARGVNH--AAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDT 604
L ++ V +CLP ++ G ++G+G E +R++ A +P+
Sbjct: 180 LKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRT-EKRDRAVRLKAARLPVAPLR 238
Query: 605 ECIR---KINAVTEKIFILPASSFCAGGEEGNDACQGDGGGPLVCQD---DGFYELAGLV 658
+C + + ++ + CAGGE+G D+C+GD GG QD + AGLV
Sbjct: 239 KCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLV 298
Query: 659 SWGFGCGRQDVPGVYVKVSSF 679
SWG CG G+Y +V ++
Sbjct: 299 SWGPQCGT---YGLYTRVKNY 316
Score = 29.7 bits (67), Expect = 3.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 352 VCGVKGTARERGARVVGGEDA 372
VCGV E R++GG DA
Sbjct: 69 VCGVPREPFEEKQRIIGGSDA 89
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 235 bits (602), Expect = 1e-72
Identities = 89/244 (36%), Positives = 126/244 (51%), Gaps = 24/244 (9%)
Query: 448 VVGGEDADPAEWCWQVAL-INSLNQY--LCGGALIGTQWVLTAAHCVTNIVRSGDAVYVR 504
VVGGEDA P W WQV+L +S Q+ CGG L+ WVLTAAHC+ S V
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCI----SSSRTYRVV 56
Query: 505 VGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTL--DNDIALLKLHGQAELKDGVCLVCL 562
+G H L+ PG+ ++V+ +H + NS L NDIALLKL L D + L CL
Sbjct: 57 LGRHSLSTN--EPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCL 114
Query: 563 PARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKI---NAVTEKIFI 619
PA G C VTG+G + G P +++ ++ +V C + + V
Sbjct: 115 PAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKT---- 170
Query: 620 LPASSFCAGGEEGNDACQGDGGGPLVCQD-DGFYELAGLVSWG--FGCGRQDVPGVYVKV 676
+ CAGG+ +C GD GGPL CQ +G +++ G+VS+G GC P V+ +V
Sbjct: 171 ---NMICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRV 227
Query: 677 SSFN 680
S++
Sbjct: 228 SNYI 231
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 235 bits (601), Expect = 1e-72
Identities = 81/239 (33%), Positives = 114/239 (47%), Gaps = 18/239 (7%)
Query: 448 VVGGEDADPAEWCWQVAL---INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVR 504
VVGG A P W WQ++L S + CGG+LI WV+TAAHCV S V
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCV----DSARTWRVV 56
Query: 505 VGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTL--DNDIALLKLHGQAELKDGVCLVCL 562
+G+H+L Q + V + +IH NS + DIALL+L+ QA L V L L
Sbjct: 57 LGEHNLN--TNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAAL 114
Query: 563 PARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPA 622
P C +TG+G GP+ +++A +P V C ++ +
Sbjct: 115 PPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATC----SSSGWWGSTVKT 170
Query: 623 SSFCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSW--GFGCGRQDVPGVYVKVSSF 679
+ CA G N C GD GGPL CQ +G Y + G+ S+ GC P V+ +VS++
Sbjct: 171 TMVCA-GGGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAY 228
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 234 bits (599), Expect = 1e-72
Identities = 71/232 (30%), Positives = 107/232 (46%), Gaps = 20/232 (8%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG+DA ++ +QV+L S + CG +++ VLTAAHCV + + + + V VG
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLS-GSHRCGASILDNNNVLTAAHCVDGL-SNLNRLKVHVGT 58
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
+ L S V ++ N++ L ND+AL+ L + D V + L
Sbjct: 59 NYL-----SESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDE 113
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSFCA 627
+ CT+TG+G G P ++E E+ + +C R V + S C
Sbjct: 114 D-LESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVID-------SHICT 165
Query: 628 GGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
+ G AC GD GGPLV G+VS+G C P VY +VSSF
Sbjct: 166 LTKRGEGACHGDSGGPLVANG----AQIGIVSFGSPCAL-GEPDVYTRVSSF 212
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 234 bits (600), Expect = 2e-72
Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 22/242 (9%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++GG + P W A+ + C G+L+ T WV++AAHC ++ V V +G
Sbjct: 1 IIGGSSSLPGSHPWLAAI--YIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDS-VSVVLGQ 57
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNS-QTLDNDIALLKL----HGQAELKDGVCLVCL 562
H R + QT + + ++ D+D+ L++L A V +CL
Sbjct: 58 HFFNRT--TDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICL 115
Query: 563 PARGVNHAAGKRCTVTGYGYMGE-AGPIPLRVREAEIPIVSDTECIRKI---NAVTEKIF 618
P G AG +C + G+G++ E +REA +P+V+D +C ++ +
Sbjct: 116 PEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNML 175
Query: 619 ILPASSFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVS 677
CAG + DACQGD GGPL C+ +G L G++SWG GCGR PGVY +V+
Sbjct: 176 -------CAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVA 228
Query: 678 SF 679
++
Sbjct: 229 NY 230
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 233 bits (598), Expect = 2e-72
Identities = 66/235 (28%), Positives = 103/235 (43%), Gaps = 22/235 (9%)
Query: 448 VVGGEDADPAEWCWQVAL--INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRV 505
++GG +A P + L + + CGG LI +VLTAAHC + + V +
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGSSIN------VTL 54
Query: 506 GDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPAR 565
G H++ + P Q + V H +N + NDI LL+L +A+ V + LP+
Sbjct: 55 GAHNIKEQ--EPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSN 112
Query: 566 GVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSF 625
G+ C+V G+G G ++E ++ + D +C + + +
Sbjct: 113 KAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDL-----RHYYDSTIEL 167
Query: 626 CAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
C G E + +GD GGPLVC G+VS+G G P KVSSF
Sbjct: 168 CVGDPEIKKTSFKGDSGGPLVCN----KVAQGIVSYGRNNGMP--PRACTKVSSF 216
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 233 bits (597), Expect = 3e-72
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 25/234 (10%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG + QV+L + + CGG+L+ WV++AAHC + V VR+G+
Sbjct: 1 IVGGYECKAYSQPHQVSLNS--GYHFCGGSLVNENWVVSAAHCYKSRVE------VRLGE 52
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
H++ Q + + H N++S +DNDI L+KL A L V V LP
Sbjct: 53 HNIKVT--EGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCA 110
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPASSFC 626
AG CTV+G+G + +++ IPI+S ++C +T + FC
Sbjct: 111 --PAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAM-------FC 161
Query: 627 AGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
AG EG D+CQGD GGP+VC EL G+VSWG+GC PGVY KV F
Sbjct: 162 AGYLEGGKDSCQGDSGGPVVCN----GELQGVVSWGYGCAEPGNPGVYAKVCIF 211
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 232 bits (594), Expect = 8e-72
Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 25/236 (10%)
Query: 448 VVGGEDADPAEWCWQVAL---INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVR 504
++GG ++ P + L + +CGG LI Q+VLTAAHC + V
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGREIT------VI 54
Query: 505 VGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPA 564
+G HD+ ++ Q ++V IH ++NS +DI LLKL + EL V +V LP+
Sbjct: 55 LGAHDVRKR--ESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPS 112
Query: 565 RGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASS 624
G C G+G G P +RE E+ I+ + C+ +
Sbjct: 113 PSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYK-------FQ 165
Query: 625 FCAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
C G A GD GGPL+C G+VS+G + P ++ +VS++
Sbjct: 166 VCVGSPTTLRAAFMGDSGGPLLCA----GVAHGIVSYGHPDAKP--PAIFTRVSTY 215
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 238 bits (610), Expect = 9e-72
Identities = 79/255 (30%), Positives = 116/255 (45%), Gaps = 17/255 (6%)
Query: 432 KYVCGVKGTARERGARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCV 491
+ VCG+ AR G ++ GG+ A P ++ WQV + L GAL+ WVLTAAH V
Sbjct: 148 EPVCGLS--ARTTGGQIYGGQKAKPGDFPWQVLI---LGGTTAAGALLYDNWVLTAAHAV 202
Query: 492 TNIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQT-LDNDIALLKLHGQ 550
A+ +R+G SP +IH + DNDIAL+KL+ +
Sbjct: 203 YEQKHDASALDIRMGTLKRL----SPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNK 258
Query: 551 AELKDGVCLVCLPARGVNH--AAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIR 608
+ + +CLP + T +G+G + G + + +IPIV +C
Sbjct: 259 VVINSNITPICLPRKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTA 317
Query: 609 KINAVTEKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQD--DGFYELAGLVSWG-FGC 664
+ A+ CAG E G D+C+GD GG LV D + + G+VSWG C
Sbjct: 318 AYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNC 377
Query: 665 GRQDVPGVYVKVSSF 679
G GVY KV ++
Sbjct: 378 GEAGQYGVYTKVINY 392
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 232 bits (594), Expect = 1e-71
Identities = 70/234 (29%), Positives = 99/234 (42%), Gaps = 19/234 (8%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
VVGG P W V+L N Q+ CGG+L+ QW+LTA C ++ V +G
Sbjct: 1 VVGGH---PGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
++G P Q + VA + + + LLKL L V L+CLP
Sbjct: 58 LFQNPQHGEPSLQRVPVAKMVCGPS------GSQLVLLKLERSVTLNQRVALICLPPEWY 111
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKIN-AVTEKIFILPASSFC 626
G +C + G+G G + A + ++S+ EC K V E S C
Sbjct: 112 VVPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIKHRGRVRE-------SEMC 163
Query: 627 AGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
G AC+GD GGPL C + L G++ C R P V+ +VS F
Sbjct: 164 TEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVF 217
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 237 bits (606), Expect = 3e-71
Identities = 78/386 (20%), Positives = 134/386 (34%), Gaps = 77/386 (19%)
Query: 376 CQLYVTVWGAIVLHNGLRTQEFRQKRPPFQCNIC----LFAASYPTYSTTSTTVRPAVYN 431
C+ ++ C F S +
Sbjct: 48 CRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPSANIQHNSKVMSLFKDE 107
Query: 432 KYVCGVKGTARERGARVVGGEDADPAEWCWQVALI---NSLNQYLCGGALIGTQWVLTAA 488
+ CG + R V G + + W L +++LCGGA+I +++LTAA
Sbjct: 108 NFDCGNFLSQR-----VSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAA 162
Query: 489 HCVTNIVRSGDAVYVRVGDHDLT----------RKYGSPGAQTLRVATTYIHHNHNSQTL 538
HCV + D +R+G+H ++ +K +P + + IH ++++ +
Sbjct: 163 HCVHGL--QNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHI 220
Query: 539 DNDIALLKLHGQAELKDGVCLVCLPARGV---NHAAGKRCTVTGYGYMGEAGPIPLRVRE 595
+DIALLKL+ + + +CLP VTG+G E G + +
Sbjct: 221 MHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT-ENGSSSDVLLQ 279
Query: 596 AEIPIVSDTECIRKINAVTEKIFILPASSFCAGGEEGNDACQGDGGGPLVCQDDGFYELA 655
A +P+ + C + +P S C GG + D+C+GD GGPL
Sbjct: 280 ANVPLQPRSACSQAYRRA------VPLSQLCVGGGDLQDSCKGDSGGPLQAPA------- 326
Query: 656 GLVSWGFGCGRQDVPGVYVKVSSFNGMSKVGDGGGPLVCQDDGFYELAGLVSWG-FGCGR 714
+ + G+VS G CG+
Sbjct: 327 -----------------------------------QYLGEYAPKMVEFGIVSQGVVTCGQ 351
Query: 715 QDVPGVYVKVSSFIGWINQIISVNNL 740
+PG+Y V ++ WI ++ N L
Sbjct: 352 ISLPGLYTNVGEYVQWITDTMASNGL 377
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 243 bits (621), Expect = 4e-71
Identities = 88/285 (30%), Positives = 132/285 (46%), Gaps = 15/285 (5%)
Query: 400 KRPPFQCNICLFAASYPTYSTTSTTVRPAVYNKYVCGVKGTARERGARVVGGEDADPAEW 459
+C + L + PT + + R+VGG + EW
Sbjct: 340 NEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEW 399
Query: 460 CWQVAL--INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGDHDLTRKYGSP 517
WQV L + ++LCGG++IG QW+LTAAHC + S + V G + +
Sbjct: 400 PWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGV-ESPKILRVYSGILNQSEI--KE 456
Query: 518 GAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGVNHAAGKRCTV 577
V IH + DIALLKL D +CLP++G + C V
Sbjct: 457 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWV 516
Query: 578 TGYGYMGEAGPIPLRVREAEIPIVSDTECIRKI--NAVTEKIFILPASSFCAGGEEGN-D 634
TG+GY I +++A+IP+V++ EC ++ + +T K+ CAG EG D
Sbjct: 517 TGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKM-------ICAGYREGGKD 569
Query: 635 ACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
AC+GD GGPL C+ + + L G+ SWG GC +++ PGVY V +
Sbjct: 570 ACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEY 614
Score = 29.0 bits (65), Expect = 6.8
Identities = 25/189 (13%), Positives = 44/189 (23%), Gaps = 28/189 (14%)
Query: 186 GNNNCLGVTTTNKPPSSQPSNLPKCPGFCLLNIMAAFCERPSVLIPQTSTCSRGSMCCDN 245
+ CL T SQ CLL PS I ++ S S+
Sbjct: 232 HHPGCLFFT-----FFSQEWPKESQRNLCLLKTSE--SGLPSTRIKKSKALSGFSLQSCR 284
Query: 246 TRLPPPTKPK--PRPTQPPTTTTVATTTAVPDDRPECPGSCIVSYLSFTCFRNAEMTEIF 303
+P + + + C + + ++T +
Sbjct: 285 HSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQ-------A 337
Query: 304 KCKKSGTQCCAPKSVIREVLDQKNGVSPSYPTYSTTSTTVRPAVYNKYVCGVKGTARERG 363
C + +C S PT + +
Sbjct: 338 SCNEGKGKCYLKLSS------------NGSPTKILHGRGGISGYTLRLCKMDNECTTKIK 385
Query: 364 ARVVGGEDA 372
R+VGG +
Sbjct: 386 PRIVGGTAS 394
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 230 bits (589), Expect = 5e-71
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG A P ++ + ++ N ++ CGGALI ++V+TAA C + ++ V +G
Sbjct: 1 IVGGRKARPRQFPFLASIQNQ-GRHFCGGALIHARFVMTAASCFQS--QNPGVSTVVLGA 57
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
+DL R+ ++ ++ + ++ Q ND+ LL+L +A L V ++ LP +
Sbjct: 58 YDLRRR--ERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNA 115
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSFCA 627
AG RC V G+G G + R + + + +C ++ C
Sbjct: 116 TVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP--------------NNVCT 161
Query: 628 GGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
G C GDGG PLVC+ G+ S+ G + P + +V+ F
Sbjct: 162 GVLTRRGGICNGDGGTPLVCE----GLAHGVASFSLGPCGRG-PDFFTRVALF 209
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 230 bits (589), Expect = 7e-71
Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 16/233 (6%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
VV G W V+L N+++CGG+LI WVLTA C + R +G
Sbjct: 1 VVNGIPT-RTNIGWMVSL-RYRNKHICGGSLIKESWVLTARQCFPS--RDLKDYEAWLGI 56
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
HD+ + Q L V+ ++ +D+ L+KL A L D V + LP G
Sbjct: 57 HDVHGRGDEKCKQVLNVSQ-LVYGPE-----GSDLVLMKLARPAVLDDFVSTIDLPNYGS 110
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSFCA 627
C+V G+GY G +R A + I+ + +C + L S CA
Sbjct: 111 TIPEKTSCSVYGWGYTGL-INYDGLLRVAHLYIMGNEKC----SQHHRGKVTLNESEICA 165
Query: 628 GGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
G E+ C+GD GGPLVC+ + G++ G GC + PG++V+V+ +
Sbjct: 166 GAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYY 218
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 229 bits (587), Expect = 8e-71
Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 24/235 (10%)
Query: 450 GGEDADPAEWCWQVAL--INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
GGE D + W VA+ CGGA++ +VLTAAHCV + + + + ++
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFD--QKPETIVIQYES 59
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKD-GVCLVCLPARG 566
+L ++ + + +T++NDIA+L+L +L LP
Sbjct: 60 TNLW----EDPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIE 115
Query: 567 VNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK--INAVTEKIFILPASS 624
G V+GYG P ++ A++ +V EC K ++ ++
Sbjct: 116 FRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQV------- 168
Query: 625 FCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
FCA + G GD G P V QD L G+ ++ P V+ KV S+
Sbjct: 169 FCA-QKVGVSLESGDAGDPTVQQD----TLVGVAAYFPKRPE-GAPEVFTKVGSY 217
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 230 bits (588), Expect = 9e-71
Identities = 67/241 (27%), Positives = 103/241 (42%), Gaps = 20/241 (8%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCV---TNIVRSGDAVYVR 504
++GG+ A + WQV GGAL+G +W+LTAAH + + +S ++ V
Sbjct: 1 IIGGQKAKMGNFPWQVFT---NIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVF 57
Query: 505 VGDHDLTRKYGSPGAQTLRVATTYIHHNHN---SQTLDNDIALLKLHGQAELKDGVCLVC 561
+G ++ + +H ++ S + DIALL+L L + +C
Sbjct: 58 LGHTNVEE---LMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 114
Query: 562 LPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILP 621
LP + G V+G+G M E L R +P+ + C +
Sbjct: 115 LPDNDTFYDLGLMGYVSGFGVMEEKIAHDL--RFVRLPVANPQACENWLRGKNRMDVFSQ 172
Query: 622 ASSFCAGGEEGN-DACQGDGGGPLVCQDD--GFYELAGLVSWGFGCGRQDVPGVYVKVSS 678
+ FCAG DACQGD GG +D + G+VSWG GC R G Y KV +
Sbjct: 173 -NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLN 229
Query: 679 F 679
+
Sbjct: 230 Y 230
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 229 bits (586), Expect = 2e-70
Identities = 69/239 (28%), Positives = 108/239 (45%), Gaps = 27/239 (11%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++GG + P + V L + + +C GALI WVLTAAHC V +G
Sbjct: 1 IIGGNEVTPHSRPYMVLL-SLDRKTICAGALIAKDWVLTAAHCN-----LNKRSQVILGA 54
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
H +TR+ P Q + V + + ++ T + D+ LL+L +A++ V ++ LP +G
Sbjct: 55 HSITRE--EPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGD 112
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKI-----NAVTEKIFILPA 622
+ G C V G+G + +RE EI I+ C + + +
Sbjct: 113 DVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNM----- 167
Query: 623 SSFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGF--GCGRQDVPGVYVKVSS 678
CAG G D+C GD G PL+C+ G+ S+G CG PGVY+ +S
Sbjct: 168 --VCAGSLRGGRDSCNGDSGSPLLCE----GVFRGVTSFGLENKCGDPRGPGVYILLSK 220
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 232 bits (594), Expect = 2e-70
Identities = 72/255 (28%), Positives = 109/255 (42%), Gaps = 20/255 (7%)
Query: 434 VCGVKGTARERGARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCV-- 491
VCG E+ R++GG+ A + WQV GGAL+G +W+LTAAH +
Sbjct: 76 VCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFT---NIHGRGGGALLGDRWILTAAHTLYP 132
Query: 492 -TNIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHN---SQTLDNDIALLKL 547
+ +S ++ V +G ++ + +H ++ S + DIALL+L
Sbjct: 133 KEHEAQSNASLDVFLGHTNVEE---LMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLEL 189
Query: 548 HGQAELKDGVCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECI 607
L + +CLP + G V+G+G M E L R +P+ + C
Sbjct: 190 ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDL--RFVRLPVANPQACE 247
Query: 608 RKINAVTEKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQDD--GFYELAGLVSWGFGC 664
+ + FCAG DACQGD GG +D + G+VSWG GC
Sbjct: 248 NWLRGKNRMDVFSQ-NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGC 306
Query: 665 GRQDVPGVYVKVSSF 679
R G Y KV ++
Sbjct: 307 SRG--YGFYTKVLNY 319
Score = 28.2 bits (63), Expect = 9.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 352 VCGVKGTARERGARVVGGEDAD 373
VCG E+ R++GG+ A
Sbjct: 76 VCGKPVNPVEQRQRIIGGQKAK 97
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 229 bits (586), Expect = 2e-70
Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 13/234 (5%)
Query: 447 RVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVG 506
++GG++ P + ++ ++CGG LI QWVLTAAHC + G + V +G
Sbjct: 2 EIIGGKEVSPHSRPFMASI-QYGGHHVCGGVLIDPQWVLTAAHCQYRFTK-GQSPTVVLG 59
Query: 507 DHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARG 566
H L++ QTL + S NDI L+KL A+L V ++ + +
Sbjct: 60 AHSLSKN--EASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRS-K 116
Query: 567 VNHAAGKRCTVTGYGYMGEAGP-IPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSF 625
+ +G +C VTG+G +RE + ++S C + + FI
Sbjct: 117 TSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ-SYYNGDPFITK-DMV 174
Query: 626 CAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSS 678
CAG +G D+C+GD GGPL+C+ +VS G CG PG+Y ++
Sbjct: 175 CAGDAKGQKDSCKGDAGGPLICK----GVFHAIVSGGHECGVATKPGIYTLLTK 224
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 230 bits (589), Expect = 3e-70
Identities = 87/280 (31%), Positives = 121/280 (43%), Gaps = 33/280 (11%)
Query: 425 VRPAVYNKYV---CGVKGTARERGARVVGGEDADPAEWCWQVALINSLNQY-LCGGALIG 480
+RP K + + R+V G DA+ WQV L Q LCG +LI
Sbjct: 5 LRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLIS 64
Query: 481 TQWVLTAAHCVTNIVRSGDA----VYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHN-S 535
+WVLTAAHC+ + + VR+G H T +Y + + YIH +N
Sbjct: 65 DRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRT-RYERNIEKISMLEKIYIHPRYNWR 123
Query: 536 QTLDNDIALLKLHGQAELKDGVCLVCLPARGVNHA---AGKRCTVTGYGYMGEA------ 586
+ LD DIAL+KL D + VCLP R + AG + VTG+G + E
Sbjct: 124 ENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVG 183
Query: 587 GPIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPASSFCAG----GEEGNDACQGDGG 641
P ++ +PIV C +T+ + FCAG + DAC+GD G
Sbjct: 184 KGQPSVLQVVNLPIVERPVCKDSTRIRITD-------NMFCAGYKPDEGKRGDACEGDSG 236
Query: 642 GPLVCQD--DGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
GP V + + + G+VSWG GC R G Y V
Sbjct: 237 GPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRL 276
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 229 bits (585), Expect = 3e-70
Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 24/238 (10%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++GG + P + +L + +LCGG L+ +WVLTAAHC+ + + +G
Sbjct: 1 IIGGREVIPHSRPYMASLQRN-GSHLCGGVLVHPKWVLTAAHCLAQ---RMAQLRLVLGL 56
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNS-QTLDNDIALLKLHGQAELKDGVCLVCLPARG 566
H L T + H + L+ND+ALL+L G+ + + + LP++
Sbjct: 57 HTL-----DSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKR 111
Query: 567 VNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKI---NAVTEKIFILPAS 623
AAG RC++ G+G + G + +RE ++ ++ C +++ S
Sbjct: 112 QVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSP-------S 164
Query: 624 SFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFG-CGRQDVPGVYVKVSSF 679
C + + C+GD GGPLVC LAG++S+ C P V V+ +
Sbjct: 165 MVCLAADSKDQAPCKGDSGGPLVCGKG--RVLAGVLSFSSRVCTDIFKPPVATAVAPY 220
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 228 bits (584), Expect = 4e-70
Identities = 78/238 (32%), Positives = 116/238 (48%), Gaps = 17/238 (7%)
Query: 451 GEDADPAEWCWQVAL-INSLNQY--LCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
GEDA P W WQV+L + CGG+LI WV+TA HC++ V +G+
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIST----SRTYQVVLGE 57
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTL--DNDIALLKLHGQAELKDGVCLVCLPAR 565
+D + GS + ++H NS + NDIAL+KL A+L D V L LP
Sbjct: 58 YDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPA 117
Query: 566 GVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSF 625
G C ++G+G + GP+P ++++A +P V C + + +
Sbjct: 118 GDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHC----SQWDWWGITVKKTMV 173
Query: 626 CAGGEEGNDACQGDGGGPLVCQD-DGFYELAGLVSW--GFGCGRQDVPGVYVKVSSFN 680
CAGG + C GD GGPL C DG +++ G+ S+ FGC P V+ +VS+F
Sbjct: 174 CAGG-DTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFI 230
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 227 bits (582), Expect = 5e-70
Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 25/236 (10%)
Query: 448 VVGGEDADPAEWCWQVAL--INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRV 505
++GG +A P + L S ++CGG L+ +VLTAAHC+ + + V +
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSSIN------VTL 54
Query: 506 GDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPAR 565
G H++ + Q + V H ++N +TL NDI LLKL +A++ D V + LP
Sbjct: 55 GAHNIMER--ERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRS 112
Query: 566 GVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPASS 624
G C+V G+G +G P +++E ++ + S+ +CI + N + +
Sbjct: 113 LAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPF-------TQ 165
Query: 625 FCAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CAG ++ GD GGPLVC G+VS+G G P VY ++SSF
Sbjct: 166 ICAGDPSKRKNSFSGDSGGPLVCN----GVAQGIVSYGRNDGTT--PDVYTRISSF 215
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 227 bits (580), Expect = 9e-70
Identities = 73/235 (31%), Positives = 109/235 (46%), Gaps = 23/235 (9%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++ G D D WQ AL+ NQ CG L+ QW+LTAAHC + R VR+G
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKVFR------VRLGH 54
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
+ L G Q + + H ++ ND+ L+KL+ + V + + +
Sbjct: 55 YSL-SPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCP 113
Query: 568 NHAAGKRCTVTGYGYMGEAG-PIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPASSF 625
+AG +C V+G+G P ++ I ++S C + + + F
Sbjct: 114 --SAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTM-------F 164
Query: 626 CAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWG-FGCGRQDVPGVYVKVSSF 679
CAG + G D+CQGD GGP+VC L GLVSWG + C R + PGVY + F
Sbjct: 165 CAGDKAGRDSCQGDSGGPVVCN----GSLQGLVSWGDYPCARPNRPGVYTNLCKF 215
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 227 bits (580), Expect = 1e-69
Identities = 81/235 (34%), Positives = 128/235 (54%), Gaps = 26/235 (11%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG +QV+L + + CGG+LI +QWV++AAHC + ++ VR+G+
Sbjct: 1 IVGGYTCGANTVPYQVSLNSG--YHFCGGSLINSQWVVSAAHCYKSGIQ------VRLGE 52
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
++ Q + + + +H ++NS TL+NDI L+KL A L V + LP
Sbjct: 53 DNINVV--EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCA 110
Query: 568 NHAAGKRCTVTGYGYMGEAGPI-PLRVREAEIPIVSDTECIRK-INAVTEKIFILPASSF 625
+AG +C ++G+G +G P ++ + PI+SD+ C +T + F
Sbjct: 111 --SAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM-------F 161
Query: 626 CAGGEE-GNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CAG E G D+CQGD GGP+VC +L G+VSWG GC +++ PGVY KV ++
Sbjct: 162 CAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNY 212
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 227 bits (580), Expect = 1e-69
Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 23/236 (9%)
Query: 448 VVGGEDADPAEWCWQVAL---INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVR 504
++GG + P + + CGG L+ ++VLTAAHC + V
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGRSMT------VT 54
Query: 505 VGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPA 564
+G H++ K Q + VA H ++N NDI LLKL A+ V + LP
Sbjct: 55 LGAHNIKAK--EETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPR 112
Query: 565 RGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASS 624
R + G C V G+G + G P + E ++ + D C + + A+
Sbjct: 113 RNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQS-----SYNRANE 167
Query: 625 FCAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
C G + + + D GGPLVC+ AG+VS+G G P V+ +V SF
Sbjct: 168 ICVGDSKIKGASFEEDSGGPLVCK----RAAAGIVSYGQTDGSA--PQVFTRVLSF 217
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 226 bits (579), Expect = 1e-69
Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 28/236 (11%)
Query: 448 VVGGEDADPAEWCWQVAL--INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRV 505
+VGG +A P + +L + + CGG LI +VLTAAHC+ + V V +
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRD--IPQRLVNVVL 58
Query: 506 GDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPAR 565
G H++ + P Q VA +N++++ NDI L++L A L V V LP +
Sbjct: 59 GAHNVRTQ--EPTQQHFSVAQ-VFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQ 115
Query: 566 GVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSF 625
G +C G+G +G P ++E + +V+ +
Sbjct: 116 DQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVT-----FFCR----------PHNI 160
Query: 626 CAGG-EEGNDACQGDGGGPLVCQDDGFYELAGLVSWG-FGCGRQDVPGVYVKVSSF 679
C C GD GGPL+C + G+ S+ +GC + P + +V+ +
Sbjct: 161 CTFVPRRKAGICFGDSGGPLICD----GIIQGIDSFVIWGCATRLFPDFFTRVALY 212
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 226 bits (578), Expect = 1e-69
Identities = 69/234 (29%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG A P W + V+L + CG LI +V++AAHCV N + AV V +G
Sbjct: 1 IVGGRRARPHAWPFMVSL-QLRGGHFCGATLIAPNFVMSAAHCVAN--VNVRAVRVVLGA 57
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
H+L+R+ P Q V + ++ L NDI +L+L+G A + V + LPA+G
Sbjct: 58 HNLSRR--EPTRQVFAVQR-IFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGR 114
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSFCA 627
G +C G+G +G I ++E + +V+ C R S+ C
Sbjct: 115 RLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSL-CRR--------------SNVCT 159
Query: 628 GGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWG-FGCGRQDVPGVYVKVSSF 679
C GD G PLVC + G+ S+ GC P + V+ F
Sbjct: 160 LVRGRQAGVCFGDSGSPLVCN----GLIHGIASFVRGGCASGLYPDAFAPVAQF 209
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 227 bits (581), Expect = 2e-69
Identities = 83/254 (32%), Positives = 114/254 (44%), Gaps = 30/254 (11%)
Query: 448 VVGGEDADPAEWCWQVAL-INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAV----Y 502
+V G DA+ WQV L S + LCG +LI +WVLTAAHC+ +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 503 VRVGDHDLTRKYGSPGAQTLRVATTYIHHNHN-SQTLDNDIALLKLHGQAELKDGVCLVC 561
VR+G H T +Y + + YIH +N + LD DIAL+KL D + VC
Sbjct: 61 VRIGKHSRT-RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 119
Query: 562 LPARGVNHA---AGKRCTVTGYGYMGEA------GPIPLRVREAEIPIVSDTECIRK-IN 611
LP R + AG + VTG+G + E P ++ +PIV C
Sbjct: 120 LPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 612 AVTEKIFILPASSFCAG----GEEGNDACQGDGGGPLVCQD--DGFYELAGLVSWGFGCG 665
+T+ + FCAG + DAC+GD GGP V + + + G+VSWG GC
Sbjct: 180 RITD-------NMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCD 232
Query: 666 RQDVPGVYVKVSSF 679
R G Y V
Sbjct: 233 RDGKYGFYTHVFRL 246
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 225 bits (577), Expect = 3e-69
Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 25/236 (10%)
Query: 448 VVGGEDADPAEWCWQVAL---INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVR 504
++GG + P + L ++ CGG LI +VLTAAHC + V
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSIT------VT 54
Query: 505 VGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPA 564
+G H++T + Q L V + H +N+ TL +DI LLKL +A L V + P+
Sbjct: 55 LGAHNITEE--EDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPS 112
Query: 565 RGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASS 624
+ G+ C V G+G G P ++E ++ ++ C +
Sbjct: 113 QFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHN-------LQ 165
Query: 625 FCAGG-EEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
C G + A +GD GGPL+C G+VS+G + P V+ ++S +
Sbjct: 166 LCVGNPRKTKSAFKGDSGGPLLCA----GVAQGIVSYGRSDAKP--PAVFTRISHY 215
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 225 bits (577), Expect = 3e-69
Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 18/235 (7%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++GG+ +D + W V ++ + CGG+++ +V+TAA CV S + + G
Sbjct: 1 IIGGKKSDITKEPWAVGVLVD-EKPFCGGSILTANFVITAAQCVDGTKPS--DISIHYGS 57
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKD-GVCLVCLPARG 566
T K T +A ++ T+ N+ A+++ +L D + LP+
Sbjct: 58 SYRTTK------GTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLL 111
Query: 567 VNHAAGKRCTVTGYGYMGEAG-PIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSF 625
+ V+G+G + EA +V C + + +I F
Sbjct: 112 YDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYD-GVF 170
Query: 626 CAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
CAGGE GD G P V L G+ S+ + P V+++V +
Sbjct: 171 CAGGEYDETYIGYGDAGDPAVQNG----TLVGVASYISSMPS-EFPSVFLRVGYY 220
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 225 bits (575), Expect = 4e-69
Identities = 70/235 (29%), Positives = 106/235 (45%), Gaps = 22/235 (9%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG +A P W Q AL + Y CGG+LI +W+LTAAHC+ V V +G
Sbjct: 1 IVGGVEAVPNSWPHQAALFID-DMYFCGGSLISPEWILTAAHCM----DGAGFVDVVLGA 55
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
H++ T++ +H N+NS + NDIA+++L L + V LP+ V
Sbjct: 56 HNIRED--EATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDV 113
Query: 568 NHAAGKRCTVTGYGYMGEAG-PIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSFC 626
G T TG+G ++ I +R+ ++PI+S+ +C VT+ C
Sbjct: 114 --GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGN-------IC 164
Query: 627 AGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCG-RQDVPGVYVKVSSFN 680
G C GD GGPL G+ S+G G P + +V+ F
Sbjct: 165 IDSTGGKGTCNGDSGGPLNYNG----LTYGITSFGAAAGCEAGYPDAFTRVTYFL 215
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 225 bits (575), Expect = 5e-69
Identities = 76/236 (32%), Positives = 113/236 (47%), Gaps = 24/236 (10%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG A ++ + V++ + CGG+L+ VLTAAHCV+ +SG +R G
Sbjct: 1 IVGGTSASAGDFPFIVSISRN-GGPWCGGSLLNANTVLTAAHCVSGYAQSG--FQIRAGS 57
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
+ G T +++ +H +++ +ND+A+LKL + L A G
Sbjct: 58 LSR-----TSGGITSSLSSVRVHPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGS 110
Query: 568 NHAAGKRCTVTGYGYMGEAGPI-PLRVREAEIPIVSDTECIRK--INAVTEKIFILPASS 624
+ AG TV G+G E G P+ + + +PIVS C + +A+T
Sbjct: 111 DPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITN-------QM 163
Query: 625 FCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
FCAG G D+CQGD GGP+V L G VSWG GC R + GVY V +
Sbjct: 164 FCAGVSSGGKDSCQGDSGGPIVDSS---NTLIGAVSWGNGCARPNYSGVYASVGAL 216
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 230 bits (588), Expect = 8e-69
Identities = 71/255 (27%), Positives = 109/255 (42%), Gaps = 20/255 (7%)
Query: 434 VCGVKGTARERGARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCV-- 491
VCG E+ +++GG+ A + WQV GGAL+G +W+LTAAH +
Sbjct: 144 VCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFT---NIHGRGGGALLGDRWILTAAHTLYP 200
Query: 492 -TNIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHN---SQTLDNDIALLKL 547
+ +S ++ V +G ++ + +H ++ S + DIALL+L
Sbjct: 201 KEHEAQSNASLDVFLGHTNVEE---LMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLEL 257
Query: 548 HGQAELKDGVCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECI 607
L + +CLP + G V+G+G M E L R +P+ + C
Sbjct: 258 ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDL--RFVRLPVANPQACE 315
Query: 608 RKINAVTEKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQDD--GFYELAGLVSWGFGC 664
+ + FCAG DACQGD GG +D + G+VSWG GC
Sbjct: 316 NWLRGKNRMDVFSQ-NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGC 374
Query: 665 GRQDVPGVYVKVSSF 679
R G Y KV ++
Sbjct: 375 SRG--YGFYTKVLNY 387
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 226 bits (579), Expect = 1e-68
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 18/245 (7%)
Query: 448 VVGGEDADPAEWCWQVAL-----INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVY 502
++GG+DA W W V+L N+ ++CGG+L+ +QW+LTAAHC + D
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTD-WR 59
Query: 503 VRVGDHDLTRKYGS---PGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCL 559
+ G ++ P Q V IH +++ + NDIAL+K+ +
Sbjct: 60 LIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGP 119
Query: 560 VCLPARGVNH-AAGKRCTVTGYGYMGEAGPIPLRV-REAEIPIVSDTECIRKINAVTEKI 617
CLP + C V G+G++ E + +EA + ++ C N+
Sbjct: 120 GCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLC----NSTRWYN 175
Query: 618 FILPASSFCAGGEEGN-DACQGDGGGPLVCQD--DGFYELAGLVSWGFGCGRQDVPGVYV 674
+ +++ CAG EG D CQGD GGPL+C+D + Y + G+ SWG GC R PGVY
Sbjct: 176 GRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYT 235
Query: 675 KVSSF 679
S+
Sbjct: 236 STWSY 240
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 223 bits (572), Expect = 2e-68
Identities = 71/236 (30%), Positives = 103/236 (43%), Gaps = 24/236 (10%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
V+GG++ + E VA NS + C G LI +WVLTAAHC + +++G
Sbjct: 1 VIGGDECNINEHRSLVAFFNS-TGFFCSGTLINEEWVLTAAHCDNTNFQ------MKLGV 53
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNH-NSQTLDNDIALLKLHGQAELKDGVCLVCLPARG 566
H QT +I N N + LD DI L+KL + + + + LP+
Sbjct: 54 HSKKVLNED--EQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSS- 110
Query: 567 VNHAAGKRCTVTGYGYMGEAG-PIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSF 625
+ G C + G+G + P A I ++ D C + +
Sbjct: 111 -PPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPE-----LLTEYRTL 164
Query: 626 CAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWG-FGCGRQDVPGVYVKVSSF 679
CAG EG D C GD GGPL+C + G+VS+G CG+ PGVY KV +
Sbjct: 165 CAGILEGGKDTCGGDSGGPLICN----GQFQGIVSFGAHPCGQGLKPGVYTKVFDY 216
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 222 bits (569), Expect = 4e-68
Identities = 79/235 (33%), Positives = 112/235 (47%), Gaps = 26/235 (11%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+V G D +Q AL S LCGG LI WVLTAAHC ++ V +G
Sbjct: 1 LVHGGPCDKTSHPYQAALYTS-GHLLCGGVLIHPLWVLTAAHCKKPNLQ------VFLGK 53
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
H+L ++ + V IH ++++ + D DI LL+L A+L + + + L
Sbjct: 54 HNLRQR--ESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCS 111
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPASSFC 626
A C + G+G + G P ++ A I +VS EC +T+ + C
Sbjct: 112 --ANTTSCHILGWGKTAD-GDFPDTIQCAYIHLVSREECEHAYPGQITQNM-------LC 161
Query: 627 AGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWG-FGCGRQDVPGVYVKVSSF 679
AG E+ D+CQGD GGPLVC L GLVSWG CG ++ PGVY V +
Sbjct: 162 AGDEKYGKDSCQGDSGGPLVCG----DHLRGLVSWGNIPCGSKEKPGVYTNVCRY 212
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 222 bits (569), Expect = 4e-68
Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 448 VVGGEDADPAEWCWQVAL--INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRV 505
++GG ++ P + L + Q CGG L+ +VLTAAHC + + V +
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNIN------VTL 54
Query: 506 GDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPAR 565
G H++ R+ Q + H +N +T+ NDI LL+L + V V LP
Sbjct: 55 GAHNIQRR--ENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRA 112
Query: 566 GVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSF 625
G CTV G+G + +RE ++ + D +C+R P
Sbjct: 113 QEGLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIFG------SYDPRRQI 165
Query: 626 CAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
C G A +GD GGPL+C G+VS+G G P V+ +VSSF
Sbjct: 166 CVGDRRERKAAFKGDSGGPLLCN----NVAHGIVSYGKSSGVP--PEVFTRVSSF 214
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 222 bits (568), Expect = 6e-68
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 25/235 (10%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
V+GG++ + E + + N LCGG LI +WVLTA HC +R + +G
Sbjct: 1 VIGGDECNINEHRFLALVYA--NGSLCGGTLINQEWVLTARHCDRGNMR------IYLGM 52
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
H+L + + + N D DI L++L+ + + LP+
Sbjct: 53 HNLKVLNKDAL-RRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPP 111
Query: 568 NHAAGKRCTVTGYGYMGE-AGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSFC 626
+ G C + G+G + +P A I I+ C + C
Sbjct: 112 --SVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATT-------LC 162
Query: 627 AGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWG-FGCGRQDVPGVYVKVSSF 679
AG EG D C+GD GGPL+C + G++S G C + PG+Y KV +
Sbjct: 163 AGILEGGKDTCKGDSGGPLICNG----QFQGILSVGGNPCAQPRKPGIYTKVFDY 213
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 222 bits (567), Expect = 7e-68
Identities = 81/236 (34%), Positives = 117/236 (49%), Gaps = 28/236 (11%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++ G WQVAL++ NQ CGG L+ +WVLTAAHC N V +G
Sbjct: 1 IIDGAPCARGSHPWQVALLSG-NQLHCGGVLVNERWVLTAAHCKMNEYT------VHLGS 53
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
L AQ ++ + ++ H +++QT ND+ L+KL+ QA L V V LP+R
Sbjct: 54 DTLG----DRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSR-- 107
Query: 568 NHAAGKRCTVTGYGYMGEAG-PIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPASSF 625
G CTV+G+G P + ++ ++S +C + + + S
Sbjct: 108 CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLEN-------SML 160
Query: 626 CAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWG-FGCGRQDVPGVYVKVSSF 679
CAG + +AC GD GGPLVC+ L GLVSWG F CG+ + PGVY +V F
Sbjct: 161 CAGIPDSKKNACNGDSGGPLVCR----GTLQGLVSWGTFPCGQPNDPGVYTQVCKF 212
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 223 bits (569), Expect = 2e-67
Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%)
Query: 435 CGVKGTARERGARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNI 494
C G D + WQV L NS + CGG +I +VLT A C
Sbjct: 41 CVPHDQCA-CGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKC---- 95
Query: 495 VRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELK 554
+ V+ + S +++ ++H +++ +ND++LL+L +
Sbjct: 96 SLLHRNITVKTYFNRT-----SQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCP 150
Query: 555 DGVCLVCLPARGVNH---AAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKIN 611
VC P + R ++G+ G L + +V EC + +N
Sbjct: 151 GAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSL--TTRPVTLVEGEECGQVLN 208
Query: 612 -AVTEKIFILPASSFCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVP 670
VT + +C A G + + G + L G++ G Q
Sbjct: 209 VTVTTRT-------YCERS--SVAAMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHM 258
Query: 671 GVYVKVSSF 679
+ KVS +
Sbjct: 259 VLVTKVSRY 267
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 220 bits (564), Expect = 2e-67
Identities = 75/235 (31%), Positives = 113/235 (48%), Gaps = 25/235 (10%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++ GED P WQ AL+ N+ C G L+ QWVL+AAHC N + +G
Sbjct: 1 IINGEDCSPHSQPWQAALVME-NELFCSGVLVHPQWVLSAAHCFQNSYT------IGLGL 53
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
H L PG+Q + + + H +N L ND+ L+KL D + + + ++
Sbjct: 54 HSL-EADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCP 112
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPASSFC 626
AG C V+G+G + G +P ++ + +VS+ C + + FC
Sbjct: 113 --TAGNSCLVSGWGLLAN-GRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSM-------FC 162
Query: 627 AG-GEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFG-CGRQDVPGVYVKVSSF 679
AG G++ D+C GD GGPL+C L GLVS+G CG+ VPGVY + F
Sbjct: 163 AGGGQDQKDSCNGDSGGPLICN----GYLQGLVSFGKAPCGQVGVPGVYTNLCKF 213
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 218 bits (558), Expect = 2e-66
Identities = 68/237 (28%), Positives = 99/237 (41%), Gaps = 26/237 (10%)
Query: 448 VVGGEDADPAEWCWQVAL-INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVG 506
VVGG++ + E + VAL ++ + C GALI +WVLTAAHC +R +++G
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRRNIR------IKLG 54
Query: 507 DHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARG 566
H + + + + LD DI L++L + V LP+R
Sbjct: 55 MHSKNIRNE-DEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRS 113
Query: 567 VNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIR--KINAVTEKIFILPASS 624
G RC + G+G + P I IV C +
Sbjct: 114 R--GVGSRCRIMGWGKIST-TTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRT------- 163
Query: 625 FCAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGF-GCGRQDVPGVYVKVSSF 679
CAG +G D C GD GGPL+C E+ G+V+ G CG+ P VY KV +
Sbjct: 164 LCAGILKGGRDTCHGDSGGPLICN----GEMHGIVAGGSEPCGQHLKPAVYTKVFDY 216
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 221 bits (565), Expect = 2e-66
Identities = 52/264 (19%), Positives = 91/264 (34%), Gaps = 25/264 (9%)
Query: 420 TTSTTVRPAVYNKYVCGVKGTARERGARVVGGEDADPAEWCWQVALINSLNQYLCGGALI 479
T S + + V G D + WQV L NS + CGG +I
Sbjct: 66 TCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVII 125
Query: 480 GTQWVLTAAHCVTNIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLD 539
+VLT A C + V+ + S +++ ++H +++ +
Sbjct: 126 RENFVLTTAKC----SLLHRNITVKTYFNRT-----SQDPLMIKITHVHVHMRYDADAGE 176
Query: 540 NDIALLKLHGQAELKDGVCLVCLPARGVNH---AAGKRCTVTGYGYMGEAGPIPLRVREA 596
ND++LL+L + VC P + R ++G+ G L
Sbjct: 177 NDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSL--TTR 234
Query: 597 EIPIVSDTECIRKIN-AVTEKIFILPASSFCAGGEEGNDACQGDGGGPLVCQDDGFYELA 655
+ +V EC + +N VT + +C A G + + G + L
Sbjct: 235 PVTLVEGEECGQVLNVTVTTRT-------YCERS--SVAAMHWMDGSVVTREHRGSWFLT 285
Query: 656 GLVSWGFGCGRQDVPGVYVKVSSF 679
G++ G Q + KVS +
Sbjct: 286 GVLGSQ-PVGGQAHMVLVTKVSRY 308
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 217 bits (556), Expect = 4e-66
Identities = 61/236 (25%), Positives = 93/236 (39%), Gaps = 20/236 (8%)
Query: 448 VVGGEDADPAEWCWQVAL-INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVG 506
++GG++ + E + VAL + CGG LI +WVLTAAHC R +++G
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRKNFR------IKLG 54
Query: 507 DHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARG 566
H + + + N D DI L++L + + LP+
Sbjct: 55 MHSKKVPNEDEQ-TRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSP 113
Query: 567 VNHAAGKRCTVTGYGYMGE-AGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSF 625
+ G C + G+G + G P I ++ C + +
Sbjct: 114 P--SVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPA---TSRTL 168
Query: 626 CAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWGFG-CGRQDVPGVYVKVSSF 679
CAG EG D C+GD GGPL+C + G+ SWG C + P Y KV
Sbjct: 169 CAGILEGGKDTCKGDSGGPLICNG----QFQGIASWGDDPCAQPHKPAAYTKVFDH 220
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 216 bits (553), Expect = 6e-66
Identities = 80/238 (33%), Positives = 113/238 (47%), Gaps = 28/238 (11%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++ G + P WQ AL + +CGG L+G +WVLTAAHC VR+GD
Sbjct: 1 ILEGRECIPHSQPWQAALFQG-ERLICGGVLVGDRWVLTAAHCKKQKYS------VRLGD 53
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQT---LDNDIALLKLHGQAELKDGVCLVCLPA 564
H L + Q ++VA + H +N+ +DI L++L A L D V V L
Sbjct: 54 HSLQSR--DQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLAN 111
Query: 565 RGVNHAAGKRCTVTGYGYMGEAG-PIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPA 622
G++C ++G+G + P + AE+ I S +C R +TE +
Sbjct: 112 LCP--KVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMV---- 165
Query: 623 SSFCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFG-CGRQDVPGVYVKVSSF 679
CAG G D CQGD GGPLVC L G+ SWG CG+ + PGVY K+ +
Sbjct: 166 ---CAGSSNGADTCQGDSGGPLVCDG----MLQGITSWGSDPCGKPEKPGVYTKICRY 216
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 227 bits (580), Expect = 7e-66
Identities = 77/259 (29%), Positives = 117/259 (45%), Gaps = 18/259 (6%)
Query: 427 PAVYNKYVCGVKGTARERGARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLT 486
++ K CGVK R R+VGG+ A + WQVA+ ++ + CGG IG W+LT
Sbjct: 301 KSLLPKLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDA-SGITCGGIYIGGCWILT 359
Query: 487 AAHCVTNIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLK 546
AAHC+ + D V H N+N+ T NDIAL++
Sbjct: 360 AAHCLRASKTH--RYQIWTTVVDWIH-PDLKRIVIEYVDRIIFHENYNAGTYQNDIALIE 416
Query: 547 LHGQAELKDGVCL----VCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVS 602
+ KD C+P C V+G+G + + ++ E+ ++S
Sbjct: 417 MKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNERVF-SLQWGEVKLIS 475
Query: 603 DTECIRKINAVTEKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQD-DGFYELAGLVSW 660
+ + CAG +G+ DAC+GD GGPLVC D + + G+VSW
Sbjct: 476 NCSKFYGNRFYEK-------EMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSW 528
Query: 661 GFGCGRQDVPGVYVKVSSF 679
G CG+ + PGVY KV+++
Sbjct: 529 GENCGKPEFPGVYTKVANY 547
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 221 bits (564), Expect = 4e-65
Identities = 84/267 (31%), Positives = 115/267 (43%), Gaps = 30/267 (11%)
Query: 435 CGVKGTARERGARVVGGEDADPAEWCWQVALINSLNQY-LCGGALIGTQWVLTAAHCVTN 493
+ R+V G DA+ WQV L Q LCG +LI +WVLTAAHC+
Sbjct: 153 TERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLY 212
Query: 494 IVRSGDA----VYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHN-SQTLDNDIALLKLH 548
+ + VR+G H T +Y + + YIH +N + LD DIAL+KL
Sbjct: 213 PPWDKNFTENDLLVRIGKHSRT-RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLK 271
Query: 549 GQAELKDGVCLVCLPARGVNH---AAGKRCTVTGYGYMGEA------GPIPLRVREAEIP 599
D + VCLP R AG + VTG+G + E P ++ +P
Sbjct: 272 KPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLP 331
Query: 600 IVSDTECIRK-INAVTEKIFILPASSFCAG----GEEGNDACQGDGGGPLVCQD--DGFY 652
IV C +T+ + FCAG + DAC+GD GGP V + + +
Sbjct: 332 IVERPVCKDSTRIRITD-------NMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRW 384
Query: 653 ELAGLVSWGFGCGRQDVPGVYVKVSSF 679
G+VSWG GC R G Y V
Sbjct: 385 YQMGIVSWGEGCDRDGKYGFYTHVFRL 411
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 215 bits (549), Expect = 5e-65
Identities = 68/249 (27%), Positives = 101/249 (40%), Gaps = 37/249 (14%)
Query: 446 ARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRV 505
A V + W VA+ N+Y CGG L+ WVLTAAHC + + V +
Sbjct: 2 APPVQSQVDCENSQPWHVAVYRF-NKYQCGGVLLDRNWVLTAAHCYNDKYQ------VWL 54
Query: 506 GDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTL-----------DNDIALLKLHGQAELK 554
G ++ P Q V+ H + N L ND+ LL+L A++
Sbjct: 55 GKNNFLED--EPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADIT 112
Query: 555 DGVCLVCLPARGVNHAAGKRCTVTGYGYMGE-AGPIPLRVREAEIPIVSDTECIRK-INA 612
D V + LP G C +G+G P ++ + ++ + +C +
Sbjct: 113 DVVKPITLPTEEP--KLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMK 170
Query: 613 VTEKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWG-FGCGRQDVP 670
VT+ + CAG +G C+ D GGPL+C L G+ SWG CG P
Sbjct: 171 VTDAM-------LCAGEMDGGSYTCEHDSGGPLICD----GILQGITSWGPEPCGEPTEP 219
Query: 671 GVYVKVSSF 679
VY K+ F
Sbjct: 220 SVYTKLIKF 228
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 214 bits (547), Expect = 9e-65
Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
VVGG + + WQVA+ +++CGG L+ WVLTAAHC + V +G
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQ-KEHICGGVLLDRNWVLTAAHCYVDQYE------VWLGK 53
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTL-----------DNDIALLKLHGQAELKDG 556
+ L ++ P AQ V+ ++ H N L +D+ LL+L A++ D
Sbjct: 54 NKLFQE--EPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDV 111
Query: 557 VCLVCLPARGVNHAAGKRCTVTGYGYMGE-AGPIPLRVREAEIPIVSDTECIRK-INAVT 614
V + LP + G +C +G+G + P ++ I ++ + C + + VT
Sbjct: 112 VKPIALPTKEP--KPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKVT 169
Query: 615 EKIFILPASSFCAGGEEGN-DACQGDGGGPLVCQDDGFYELAGLVSWG-FGCGRQDVPGV 672
+ + CAG G D C+ D GGPL+C L G S+G CG+ VP +
Sbjct: 170 DVM-------LCAGEMGGGKDTCRDDSGGPLICD----GILQGTTSYGPVPCGKPGVPAI 218
Query: 673 YVKVSSF 679
Y + F
Sbjct: 219 YTNLIKF 225
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 209 bits (534), Expect = 5e-63
Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG + + WQV + + + +CGG L+ QWVLTAAHC+ N + +G
Sbjct: 1 IVGGWECEKHSQPWQVLVASR-GRAVCGGVLVHPQWVLTAAHCIRNKSV------ILLGR 53
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTL-----------DNDIALLKLHGQAELKDG 556
H L Q +V+ ++ H ++ L +D+ LL+L AEL D
Sbjct: 54 HSLFHP--EDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDA 111
Query: 557 VCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRV-REAEIPIVSDTECIRK-INAVT 614
V ++ LP + A G C +G+G + + + + ++ ++S+ C + VT
Sbjct: 112 VKVMDLPTQEP--ALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVT 169
Query: 615 EKIFILPASSFCAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGF-GCGRQDVPGV 672
+ + CAG G C GD GGPLVC L G+ SWG C + P +
Sbjct: 170 KFM-------LCAGRWTGGKSTCSGDSGGPLVCN----GVLQGITSWGSEPCALPERPSL 218
Query: 673 YVKVSSF 679
Y KV +
Sbjct: 219 YTKVVHY 225
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 207 bits (530), Expect = 2e-62
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 30/241 (12%)
Query: 448 VVGGEDADPAEWCWQVALINSL---NQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVR 504
++ G +A + +Q L +L + CGG+LI +W+LTAAHCV + +V V
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD----AVSVVVY 56
Query: 505 VGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPA 564
+G G + H N T ND+AL+K+ E D + + LP+
Sbjct: 57 LGSAVQY-----EGEAVVNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDNIQPIRLPS 110
Query: 565 RG--VNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRK--INAVTEKIFIL 620
N TV+G+G I ++ ++ + C ++ + E
Sbjct: 111 GEELNNKFENIWATVSGWGQSNTDTVI---LQYTYNLVIDNDRCAQEYPPGIIVEST--- 164
Query: 621 PASSFCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCG-RQDVPGVYVKVSSF 679
C +G C GD GGP V D L G+VS+ G G P + +V+S+
Sbjct: 165 ----ICGDTSDGKSPCFGDSGGPFVLSDKNL--LIGVVSFVSGAGCESGKPVGFSRVTSY 218
Query: 680 N 680
Sbjct: 219 M 219
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 207 bits (530), Expect = 2e-62
Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 37/247 (14%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++GG + + WQVA+ + + CGG L+ QWVLTAAHC+++ + + +G
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQ-GHFQCGGVLVHPQWVLTAAHCMSDDYQ------IWLGR 53
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNS-----------QTLDNDIALLKLHGQAELKDG 556
H+L++ AQ +V+ +++ + + +D+ LL+L A + D
Sbjct: 54 HNLSKD--EDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDA 111
Query: 557 VCLVCLPARGVNHAAGKRCTVTGYGYM-GEAGPIPLRVREAEIPIVSDTECIRK-INAVT 614
V ++ LP + G C +G+G + ++ E+ + S+ +C R +T
Sbjct: 112 VKILDLPTQEP--KLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMT 169
Query: 615 EKIFILPASSFCAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFG-CGRQDVPGV 672
E + CA + C GD GG L+C G+ SWG+ C + V
Sbjct: 170 EFV-------LCATHRDDSGSICLGDSGGALICD----GVFQGITSWGYSECADFNDNFV 218
Query: 673 YVKVSSF 679
+ KV
Sbjct: 219 FTKVMPH 225
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 207 bits (530), Expect = 2e-62
Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 39/247 (15%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG + WQVA+ +N+YLCGG LI WV+TAAHC +N + V +G
Sbjct: 1 IVGGYKCEKNSQPWQVAV---INEYLCGGVLIDPSWVITAAHCYSNNYQ------VLLGR 51
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTL-----------DNDIALLKLHGQAELKDG 556
++L + P AQ V ++ H ++ + ND+ LL L A++ G
Sbjct: 52 NNLFKD--EPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGG 109
Query: 557 VCLVCLPARGVNHAAGKRCTVTGYGYMGEAG-PIPLRVREAEIPIVSDTECIRK-INAVT 614
V ++ LP + G C +G+G + + ++ I ++S+ +CI + VT
Sbjct: 110 VKVIDLPTKEP--KVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVT 167
Query: 615 EKIFILPASSFCAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFG-CGRQDVPGV 672
+ + CAG EG D C GD GGPL+C L G+ S G C + P +
Sbjct: 168 DVM-------LCAGEMEGGKDTCAGDSGGPLICD----GVLQGITSGGATPCAKPKTPAI 216
Query: 673 YVKVSSF 679
Y K+ F
Sbjct: 217 YAKLIKF 223
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 206 bits (527), Expect = 5e-62
Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 38/248 (15%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+VGG + + WQ AL + + + CGG L+ QWVLTAAHC+++ + + +G
Sbjct: 1 IVGGWECEQHSQPWQAALYHF-STFQCGGILVHRQWVLTAAHCISDNYQ------LWLGR 53
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTL-----------DNDIALLKLHGQAE-LKD 555
H+L AQ + V+ ++ H N L +D+ LL+L A+ + D
Sbjct: 54 HNLFDD--ENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITD 111
Query: 556 GVCLVCLPARGVNHAAGKRCTVTGYGYMG-EAGPIPLRVREAEIPIVSDTECIRK-INAV 613
V +V LP G C +G+G + E P ++ ++ I+ + EC + + V
Sbjct: 112 AVKVVELPTEEP--EVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQKV 169
Query: 614 TEKIFILPASSFCAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWG-FGCGRQDVPG 671
T+ + C G EG D C GD GGPL+C L G+ SWG CG + P
Sbjct: 170 TDFM-------LCVGHLEGGKDTCVGDSGGPLMCD----GVLQGVTSWGYVPCGTPNKPS 218
Query: 672 VYVKVSSF 679
V V+V S+
Sbjct: 219 VAVRVLSY 226
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 209 bits (534), Expect = 7e-60
Identities = 57/325 (17%), Positives = 96/325 (29%), Gaps = 77/325 (23%)
Query: 445 GARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVR 504
G + +D W V + +Q C GALI QWVLTAAHC + V
Sbjct: 221 GVGNMSANASDQERTPWHVTI-KPKSQETCRGALISDQWVLTAAHCFRDG-NDHSLWRVN 278
Query: 505 VGDHDLTRKYGSPGAQTLRVATTYIHHNHNS---------QTLDNDIALLKLHGQAELKD 555
VGD + + I + + +DIALLKL + ++
Sbjct: 279 VGDPKS------QWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMST 332
Query: 556 GVCLVCLPA-----RGVNHAAGKRCTVTGYGYMGEAG--PIPLRVREAEIPI-----VSD 603
+CLP + G C + + + + +++ I V
Sbjct: 333 HARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEW 392
Query: 604 TECIRKINAVTEKIFILPASS-------FCAGGEEGNDACQGDGGGPLVCQDDGFYELAG 656
T C ++ L C+G +E C+G+ GG + + + G
Sbjct: 393 TSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVG 452
Query: 657 LVSWGF-----GCGRQDVPGVYVKVSSFNGMSKVGDGGGPLVCQDDGFYELAGLVSWGFG 711
LVSWG G ++ +
Sbjct: 453 LVSWGLYNPCLGSADKNSRKRAPR------------------------------------ 476
Query: 712 CGRQDVPGVYVKVSSFIGWINQIIS 736
++ + W+ Q +
Sbjct: 477 SKVPPPRDFHINLFRMQPWLRQHLG 501
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 206 bits (526), Expect = 6e-59
Identities = 58/334 (17%), Positives = 97/334 (29%), Gaps = 89/334 (26%)
Query: 445 GARVVGGEDADPAEWCWQVAL---INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAV 501
G + D + WQ + S C GA++ +VLTAAHC T + +
Sbjct: 212 GMVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHS-I 270
Query: 502 YVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNS---------QTLDNDIALLKLHGQAE 552
V VG + L + H N+N + D D+AL+KL + +
Sbjct: 271 KVSVGGEK----------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 320
Query: 553 LKDGVCLVCLPARGVNHAAGKRCTVTGYGYMGE------------AGPIPLRVREAEIPI 600
+ +CLP A + T E ++ E+ I
Sbjct: 321 YGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYI 380
Query: 601 VSDTE---CIRKINAVTEKIFILPASS------FCAGGEEGN---DACQGDGGGPLVCQD 648
+ + C R + S C GG + C+GD GGPL+
Sbjct: 381 KNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK 440
Query: 649 DGFYELAGLVSWGF--GCGRQDVPGVYVKVSSFNGMSKVGDGGGPLVCQDDGFYELAGLV 706
+ G++SWG C Q
Sbjct: 441 RSRFIQVGVISWGVVDVCKNQKRQKQV--------------------------------- 467
Query: 707 SWGFGCGRQDVPGVYVKVSSFIGWINQIISVNNL 740
++ + + W+ + + +L
Sbjct: 468 -------PAHARDFHINLFQVLPWLKEKLQDEDL 494
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 190 bits (484), Expect = 3e-51
Identities = 88/249 (35%), Positives = 118/249 (47%), Gaps = 21/249 (8%)
Query: 435 CGVKGTARERGARVVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNI 494
+ ++ RVVGG A P W WQV+L + CGG LI +WVLTAAHC+
Sbjct: 549 GKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKS 608
Query: 495 VRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELK 554
R V +G H P Q + V+ ++ DIALLKL A +
Sbjct: 609 PRPSS-YKVILGAHQEVN--LEPHVQEIEVSRLFLEPT------RKDIALLKLSSPAVIT 659
Query: 555 DGVCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKI---N 611
D V CLP+ A C +TG+G + ++EA++P++ + C R
Sbjct: 660 DKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNG 718
Query: 612 AVTEKIFILPASSFCAGGEEG-NDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVP 670
V + CAG G D+CQGD GGPLVC + Y L G+ SWG GC R + P
Sbjct: 719 RVQS-------TELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKP 771
Query: 671 GVYVKVSSF 679
GVYV+VS F
Sbjct: 772 GVYVRVSRF 780
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 177 bits (449), Expect = 8e-47
Identities = 55/281 (19%), Positives = 89/281 (31%), Gaps = 57/281 (20%)
Query: 445 GARVVGGEDADPAEWCWQVAL---INSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAV 501
G + D + WQ + S C GA++ +VLTAAHC T + +
Sbjct: 454 GMVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHS-I 512
Query: 502 YVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNS---------QTLDNDIALLKLHGQAE 552
V VG + L + H N+N + D D+AL+KL + +
Sbjct: 513 KVSVGGEK----------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 562
Query: 553 LKDGVCLVCLPARGVNHAAGKRCTVTGYGYMGE------------AGPIPLRVREAEIPI 600
+ +CLP A + T E ++ E+ I
Sbjct: 563 YGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYI 622
Query: 601 VSDTE---CIRKINAVTEKIFILPASS------FCAGGEEGN---DACQGDGGGPLVCQD 648
+ + C R + S C GG + C+GD GGPL+
Sbjct: 623 KNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK 682
Query: 649 DGFYELAGLVSWGF--GCGR--------QDVPGVYVKVSSF 679
+ G++SWG C ++ +
Sbjct: 683 RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 723
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 147 bits (373), Expect = 9e-42
Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
+V GE+A P W WQV+L + + CGG+LI WV+TAAHC + V G+
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCG-----VTTSDVVVAGE 55
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
D S Q L++A + + +NS T++NDI LLKL A V VCLP+
Sbjct: 56 FDQGSS--SEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASD 113
Query: 568 NHAAGKRCTVTGYGY 582
+ AAG C TG+G
Sbjct: 114 DFAAGTTCVTTGWGL 128
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 136 bits (346), Expect = 9e-38
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 19/152 (12%)
Query: 534 NSQTLDNDIALLKLHGQAELKDGVCLVCLPARGVNHAAGKRCTVTGYGYM---GEAGPIP 590
+ + +D+ LL+L A++ D V ++ LP + G C +G+G + + P
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQ--EPELGSTCEASGWGSIEPGPDDFEFP 59
Query: 591 LRVREAEIPIVSDTECIRK-INAVTEKIFILPASSFCAGGEEG-NDACQGDGGGPLVCQD 648
++ ++ ++ +T C + VTE + CAG G D C GD GGPL+C
Sbjct: 60 DEIQCVQLTLLQNTFCADAHPDKVTESM-------LCAGYLPGGKDTCMGDSGGPLICNG 112
Query: 649 DGFYELAGLVSWGFG-CGRQDVPGVYVKVSSF 679
G+ SWG CG + P +Y K+ +
Sbjct: 113 ----MWQGITSWGHTPCGSANKPSIYTKLIFY 140
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 107 bits (270), Expect = 4e-28
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 587 GPIPLRVREAEIPIVSDTECIRK-INAVTEKIFILPASSFCAGGEEGNDACQGDGGGPLV 645
P R+++A +P++S+T C + + + + CAG G +C GD GGPLV
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMI-------CAG-ASGVSSCMGDSGGPLV 52
Query: 646 CQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSSF 679
C+ +G + L G+VSWG PGVY +V++
Sbjct: 53 CKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTAL 86
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 91.0 bits (227), Expect = 2e-22
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 448 VVGGEDADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGD 507
++GG + + WQVA+ + + + CGG L+ +WVLTAAHC + V +G
Sbjct: 1 IIGGRECEKNSHPWQVAIYHY-SSFQCGGVLVNPKWVLTAAHCKNDNYE------VWLGR 53
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHN 534
H+L AQ V + H N
Sbjct: 54 HNLFEN--ENTAQFFGVTADFPHPGFN 78
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 86.2 bits (213), Expect = 2e-19
Identities = 43/238 (18%), Positives = 71/238 (29%), Gaps = 42/238 (17%)
Query: 448 VVGGED-----ADPAEWCWQVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDA-- 500
VV G+D A+ + + C G LI +LT HCV N +
Sbjct: 1 VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAK 60
Query: 501 VYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLV 560
V G +D T GS V + YI N+ D A++K G
Sbjct: 61 GSVYPGMNDSTAVNGSANMTEFYVPSGYI----NTGASQYDFAVIKTDTNIGNTVGY--- 113
Query: 561 CLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFIL 620
R V + G ++GY + E + + +
Sbjct: 114 -RSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYYTI-------- 164
Query: 621 PASSFCAGGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSS 678
D G+ G ++ D ++ G+ + G+ G K ++
Sbjct: 165 -------------DTFSGNSGSAML---DQNQQIVGVHNAGYSNG---TINGGPKATA 203
Score = 31.1 bits (70), Expect = 0.90
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 672 VYVKVSSFNGMSKVGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVYVKVSS-FIGW 730
Y + +F+G S G ++ D ++ G+ + G+ G K ++ F+ +
Sbjct: 160 AYYTIDTFSGNS-----GSAML---DQNQQIVGVHNAGYSNG---TINGGPKATAAFVEF 208
Query: 731 INQIIS 736
IN +
Sbjct: 209 INYAKA 214
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 68.6 bits (167), Expect = 3e-13
Identities = 32/226 (14%), Positives = 60/226 (26%), Gaps = 32/226 (14%)
Query: 455 DPAEWCW--QVALINSLNQYLCGGALIGTQ---WVLTAAHCVTNIVRSGDAVYVRV--GD 507
+PA+ +V + ++C ++ + V TA HC+ + A
Sbjct: 2 NPADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAY 61
Query: 508 HDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGV 567
++G A+ L + + N ++D A L + +
Sbjct: 62 DYGESEHGVWAAEELVTSAEWA----NRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAF 117
Query: 568 NHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSFCA 627
N G+ + GY L S + I
Sbjct: 118 NQPRGQYYSAYGYPAAAPFNGQELH---------SCHGTATNDPMGSSTQGI-------- 160
Query: 628 GGEEGNDACQGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVY 673
+ G GGP + S+G+ + G Y
Sbjct: 161 ----PCNMTGGSSGGPWFLGNGTGGAQNSTNSYGYTFLPNVMFGPY 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 2e-08
Identities = 85/505 (16%), Positives = 142/505 (28%), Gaps = 176/505 (34%)
Query: 219 MAAFCERPSVLIPQTSTCSRGSMCCDNTRLPPPTKPKPRPTQ---------PPTTTTVAT 269
M A+ RP L S GS+ L PT +Q P T A
Sbjct: 1 MDAYSTRPLTL-------SHGSL---EHVLLVPTASFFIASQLQEQFNKILPEPTEGFA- 49
Query: 270 TTAVPDDRPECPGSCIVSYLSFTCFRNAEMTEIFKCKKSGTQCCAPKSVIREVLD----- 324
DD P P + +L + + + E ++ V+ L
Sbjct: 50 ----ADDEPTTPAELVGKFLGYV----SSLVE-------PSKVGQFDQVLNLCLTEFENC 94
Query: 325 --QKNGV---SPSYPTYSTTSTTVRPAVYNKYV--CGVKGT-------------ARERGA 364
+ N + + + T+ + Y+ + E A
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 365 RVV---GG----ED-----------------------ADMLCQLYVTVWGAIVLH-NGLR 393
++V GG +D A+ L +L T A + GL
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 394 TQEF---RQKRP--------PFQCN-ICLFAASYPTYSTTSTT--VRPAVYNKYVCGVKG 439
E+ P P C I + ++ Y T+ P Y+ G
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH--YVVTAKLLGFTPGELRSYLKGA-- 270
Query: 440 TARERG---ARVVGGEDADPAEWCWQVALINSLN--QYLCGGALIGTQWVLTAAHC---V 491
T +G A + D+ W+ ++ L IG +
Sbjct: 271 TGHSQGLVTAVAIAETDS------WESFFVSVRKAITVL---FFIG-----VRCYEAYPN 316
Query: 492 TNIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQA 551
T++ S + + G P L ++ N + + + + H A
Sbjct: 317 TSLPPSILEDSLENNE-------GVPSPM-LSIS------NLTQEQVQDYVNKTNSHLPA 362
Query: 552 ELKDGVCLVCLPARGVNHAAGKRCTV-TGYGYMGEAGPIPL-----RVREAEIPIVSDTE 605
+ + L VN G + V +G P L +R+A+ P D
Sbjct: 363 GKQVEISL-------VN---GAKNLVVSGP-------PQSLYGLNLTLRKAKAPSGLDQS 405
Query: 606 CI----RKINAVTEKIFILPASS-F 625
I RK+ F LP +S F
Sbjct: 406 RIPFSERKLKFSNR--F-LPVASPF 427
Score = 56.6 bits (136), Expect = 3e-08
Identities = 68/423 (16%), Positives = 122/423 (28%), Gaps = 146/423 (34%)
Query: 274 PDDRPE------CPGSC-IVSYLSFTCFRNAEMTEIFKCKKSGTQCCAPKSVIREVLDQK 326
P + P+ P SC ++ + + K G
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-------AKLLG----------------- 257
Query: 327 NGVSPSYPTYSTTSTTVRPAVYNKYVCGVKGTARERG---ARVVGGED--ADMLCQLYVT 381
P Y+ G T +G A + D +
Sbjct: 258 ----------------FTPGELRSYLKGA--TGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 382 VWGAIVLHNGLRTQEFRQKRPPFQCNICLFAASYPTYSTTSTTVRPAVYNK-----YVCG 436
+ ++ G+R E +YP S + + ++ N +
Sbjct: 300 I--TVLFFIGVRCYE-----------------AYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 437 VKGTARERGARVVGGEDAD-PAEWCWQVALINSLNQYLCGG---ALIGTQWVLTAAHCVT 492
+ +E+ V ++ PA +++L+N + G +L G L A +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 493 NIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNH----NSQTLDNDIAL--LK 546
+ +S R+ + RK + L VA+ + H+H S ++ D+ +
Sbjct: 401 GLDQS------RIPFSE--RKL-KFSNRFLPVASPF--HSHLLVPASDLINKDLVKNNVS 449
Query: 547 LHGQAELKDGVCLVCLPARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIP--IVSDT 604
+ +++ +P V T G LRV I IV
Sbjct: 450 FNA-KDIQ-------IP---VYD------TFDGSD---------LRVLSGSISERIV--- 480
Query: 605 ECIRKINAVTEKIFILPAS---SFCAGGEEG-----NDACQGDG-----GGPLVCQDD-- 649
+CI ++ E A+ F GG G + G G G L D
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Query: 650 -GF 651
GF
Sbjct: 541 YGF 543
Score = 34.3 bits (78), Expect = 0.20
Identities = 45/261 (17%), Positives = 75/261 (28%), Gaps = 98/261 (37%)
Query: 503 VRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCL 562
V +LT +G + +R N+++ + DG
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIR-------ENYSAMIFETI------------VDGKLKTEK 1705
Query: 563 PARGVNHAAGKRCTVTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINA-----VTEK- 616
+ +N + T Y + E G + S T+ + EK
Sbjct: 1706 IFKEINEHS------TSYTFRSEKGLL------------SATQ-----FTQPALTLMEKA 1742
Query: 617 IF-------ILPASSFCAG---GEEGNDACQGDGGGPLVCQDD--GFYELAGLVSWGFGC 664
F ++PA + AG GE A L D L +V F
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGE--YAA--------LASLADVMSIESLVEVV---FYR 1789
Query: 665 GR---QDVPGVYVKVSSFNGMSKVGDGGGPLVCQDDGFYELAGLVSWGFGCGRQDVPGVY 721
G VP + S++ GM + G ++ + V
Sbjct: 1790 GMTMQVAVPRDELGRSNY-GMIAINPG------------------RVAASFSQEALQYVV 1830
Query: 722 VKVSSFIGWINQIISVN-NLR 741
+V GW+ +I VN N+
Sbjct: 1831 ERVGKRTGWLVEI--VNYNVE 1849
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 39.0 bits (90), Expect = 0.003
Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 23/145 (15%)
Query: 448 VVGGED-----ADPAEWCW----QVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSG 498
V+ + D + + + ++ G ++G +LT H V
Sbjct: 1 VILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDP 60
Query: 499 DAVYVRVGDHD-LTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGV 557
A+ + G A+ + + + D+A++K + K
Sbjct: 61 HALKAFPSAINQDNYPNGGFTAEQITKYSG-----------EGDLAIVKFSPNEQNKHIG 109
Query: 558 CLVCLPARGVNHAA--GKRCTVTGY 580
+V N + TVTGY
Sbjct: 110 EVVKPATMSNNAETQTNQNITVTGY 134
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 37.6 bits (87), Expect = 0.008
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 3/86 (3%)
Query: 462 QVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSGDAVYVRVGDHDLTRKYGSPGAQT 521
V + L G LIG ++T H ++ + + K P
Sbjct: 38 SVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYG 97
Query: 522 LRVATTYIHHNHNSQTLDNDIALLKL 547
A + D+A++KL
Sbjct: 98 KFEAEEIKESPYGQ---GLDLAIIKL 120
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.009
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 37/133 (27%)
Query: 285 IVSYLSFTCFRNAEMTE-------IF--------KCKKSGTQCCAPKSVIREVLDQKNGV 329
S++ +N E E +F K + T A S++ + K
Sbjct: 473 FYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-- 529
Query: 330 SPSYPTYSTTSTTVRPAVYNKYVCGVKGTARERGARVVGGEDADMLCQLYVTVWGAIVL- 388
Y Y + Y + V + + ++ + D+L + I L
Sbjct: 530 ---YKPYICDND----PKYERLVNAILDFLPKIEENLICSKYTDLL-R--------IALM 573
Query: 389 --HNGLRTQEFRQ 399
+ + +Q
Sbjct: 574 AEDEAIFEEAHKQ 586
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 37.3 bits (85), Expect = 0.012
Identities = 24/225 (10%), Positives = 56/225 (24%), Gaps = 26/225 (11%)
Query: 463 VALINSLNQYLCGGALI------GTQWVLTAAHCVTNIVRSGDAVYVRVGDHDLTRKYGS 516
V + C G+L+ + LTA HC + ++ V Y +
Sbjct: 25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWN-------YQN 77
Query: 517 PGAQTLRVATTYIHHNHNSQTLDNDIALLKLHGQAELKDGVCLVCLPARGVNHAAGKRCT 576
+ + + + + + + + ++ L+ L N A
Sbjct: 78 STCRAPNTPASGANGDGSMSQTQSGSTVKATYATSD----FTLLELN-NAANPAFNLFWA 132
Query: 577 VTGYGYMGEAGPIPLRVREAEIPIVSDTECIRKINAVTEKIFILPASSFCAGGEEGNDAC 636
G I + +S++ A + +
Sbjct: 133 GWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGT---THLNVQWQPSGGVT 189
Query: 637 QGDGGGPLVCQDDGFYELAGLVSWGFGC---GRQDVPGVYVKVSS 678
+ G + + G + G + Y +V +
Sbjct: 190 EPGSSGSPIYSPEKRV--LGQLHGGPSSCSATGTNRSDQYGRVFT 232
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 36.9 bits (85), Expect = 0.016
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 21/110 (19%)
Query: 448 VVGGED-----ADPAEWCW----QVALINSLNQYLCGGALIGTQWVLTAAHCVTNIVRSG 498
V+ + D + + + ++ G ++G +LT H V
Sbjct: 1 VILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDP 60
Query: 499 DAVYVRVGDHDL-TRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALLKL 547
A+ + G A+ + + + D+A++K
Sbjct: 61 HALKAFPSAINQDNYPNGGFTAEQITKYSG-----------EGDLAIVKF 99
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 35.4 bits (81), Expect = 0.078
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 117 SPSMRCCLESPANGTTPAAGGSTTSNAGTSSPSTTTPPTLYTTSKPYKKPQNPEKRPQPP 176
SP ++ E G+ + G SP T+P + P +P P P
Sbjct: 1506 SPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPF--SSAMSPGYGLTSPSYSPSSP 1563
Query: 177 GASNKIDTGGNNNCLGVTTTNKPPSSQPSNLPKCPGF 213
G S ++ T+ + P+S PS P P +
Sbjct: 1564 GYSTSPAYMPSSPSYSPTSPSYSPTS-PSYSPTSPSY 1599
Score = 33.1 bits (75), Expect = 0.39
Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 27/159 (16%)
Query: 126 SPANGTTPAAGGSTTSNAGTSSPSTTTPPTLYTTSKPYKKPQNPEKRPQPPGASNKIDTG 185
SP+ T + T+ + +SPS + Y+ + P P +P P P S T
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTS 1673
Query: 186 GNNNCLGVTTTNKPPSSQPSNLPKCPGFCLLNIMAAFCERPSVLIPQTSTCSRGSMCCDN 245
+ + T+ + PS P P + + S P S S
Sbjct: 1674 PSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSY------SPTSPSYSPTSPSY----- 1718
Query: 246 TRLPPPTKPKPRPTQP---PTTTTVATTTAVPDDRPECP 281
PT P PT P PT+ + + T+ P P P
Sbjct: 1719 ----SPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSP 1751
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.1 bits (77), Expect = 0.20
Identities = 17/166 (10%), Positives = 35/166 (21%), Gaps = 6/166 (3%)
Query: 45 SQSSSTTPYVSSTSAVTQTTTSRPQQPAGSKPCHGLLDTITSTAESKDCPGTCVHAIATL 104
SS + A TT + G+ +T ++
Sbjct: 24 DDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDK 83
Query: 105 ICAEVLDDVQCPSPSMRCCLESPANGTTPAAGGSTTSNAGTSSPSTTTPPTLYTTSKPYK 164
D V S + E+ + + +
Sbjct: 84 KGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELS------RSG 137
Query: 165 KPQNPEKRPQPPGASNKIDTGGNNNCLGVTTTNKPPSSQPSNLPKC 210
N Q P ++ + PP++ + +C
Sbjct: 138 NVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQC 183
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 31.9 bits (72), Expect = 1.0
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 127 PANGTTPAA-GGSTTSNAGTSSPSTTTPPTLYTTSKPYKKPQNPEKRPQP-PGASNKIDT 184
PA T+P G + + A P+T PP L KP+ +K P P +
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 185 GGNNNCLGVTTTNKPPSSQPSNLP 208
+ + ++ ++
Sbjct: 62 TVAAGHATLREHLRDIKAENTDAN 85
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 30.9 bits (69), Expect = 1.8
Identities = 13/137 (9%), Positives = 18/137 (13%), Gaps = 33/137 (24%)
Query: 146 SSPSTTTPPTLYTTSKPYKKPQNPEKRPQPPGASNKIDTGGNNNCLGVTTTNKPPSSQPS 205
SS + + + PP + P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDF---------------LAALHPPVTVPD 47
Query: 206 NLPKCPGFCLLNIMAAFCERPSVLIPQTSTCSRGSMCCDNTRLPPPTKP---KPRPTQPP 262
P P + L PT P P
Sbjct: 48 PAP---------------PPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRY 92
Query: 263 TTTTVATTTAVPDDRPE 279
A
Sbjct: 93 GRQPGPEAPASAPPAAG 109
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 30.4 bits (68), Expect = 3.0
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 117 SPSMRCCLESPANGTTPAAGGSTTSNAGTSSPSTTTPPTLYTTSKPYKKPQNPEKRPQPP 176
SPS SP+ T + T+ + +SPS + Y+ + P P +P P P
Sbjct: 1616 SPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSP 1673
Query: 177 GAS-NKIDTGGNNNCLGVTTTNKPPSSQPSNLPKCPGF 213
S + T+ N P+S PS P PG+
Sbjct: 1674 SYSPTSPSYSPTSPSYSPTSPNYSPTS-PSYSPTSPGY 1710
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 28.5 bits (64), Expect = 5.8
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 13/72 (18%)
Query: 476 GALIGTQWVLTAAHCVTNIVRSGDAVYVRVGDHDLTRKYGSPGAQTLRVATTYIHHNHNS 535
G ++G ++T H + D RV H ++ G + + +
Sbjct: 26 GVVVGKNTIVTNKHIAKS----NDIFKNRVSAHHSSKGKGGGNYDVKDI----VEYPG-- 75
Query: 536 QTLDNDIALLKL 547
D+A++ +
Sbjct: 76 ---KEDLAIVHV 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.422
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,145,900
Number of extensions: 668831
Number of successful extensions: 2484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1807
Number of HSP's successfully gapped: 239
Length of query: 741
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 640
Effective length of database: 3,881,772
Effective search space: 2484334080
Effective search space used: 2484334080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.9 bits)