RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7305
(258 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 218 bits (558), Expect = 1e-71
Identities = 96/252 (38%), Positives = 131/252 (51%), Gaps = 33/252 (13%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG E+ G +PW ++ G R +CGGSLI R+VLTAAHC +
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGR---HFCGGSLISPRWVLTAAHCVYS-----SAPSNY 52
Query: 78 TVRLGDIDLRREDEPSMPETYRVEE-GLNPC--PSDYYYQASVLTITSPRYLTGIPAMVL 134
TVRLG DL + +V++ ++P PS Y ++L + P L+
Sbjct: 53 TVRLGSHDLSSNEGGGQ--VIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSD------ 104
Query: 135 FVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECDKTYF 186
V L PS N +SG V ++V++P+ N+EC + Y
Sbjct: 105 NVRPICL----PSSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYS 160
Query: 187 Q--PITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYT 244
ITDN +CAG EGGKDACQGDSGGPL+ +G + VGIVS+G+ C P YPGVYT
Sbjct: 161 YGGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYT 220
Query: 245 RVTKYLDWIEQN 256
RV+ YLDWI++
Sbjct: 221 RVSSYLDWIQKT 232
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 216 bits (553), Expect = 7e-71
Identities = 97/251 (38%), Positives = 129/251 (51%), Gaps = 36/251 (14%)
Query: 17 RVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQ 76
R+VGG E+ G +PW ++ G R +CGGSLI R+VLTAAHC +
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGGGR---HFCGGSLISPRWVLTAAHCVRG-----SDPSN 52
Query: 77 FTVRLGDIDLRREDEPSMPETYRVEE-GLNPC--PSDYYYQASVLTITSPRYLTGIPAMV 133
VRLG DL +E + +V + ++P PS Y ++L + P L+
Sbjct: 53 IRVRLGSHDLSSGEEG---QVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSD----- 104
Query: 134 LFVEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQRQVDLPVWENSECDKT 184
V L PS N +SG ++V++P+ N+ C +
Sbjct: 105 -NVRPICL----PSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRA 159
Query: 185 YFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGV 242
Y ITDN +CAG EGGKDACQGDSGGPL+ DG W+ VGIVS+G+ C PG PGV
Sbjct: 160 YSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVCN-DGRWVLVGIVSWGSGCARPGKPGV 218
Query: 243 YTRVTKYLDWI 253
YTRV+ YLDWI
Sbjct: 219 YTRVSSYLDWI 229
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 164 bits (417), Expect = 1e-50
Identities = 82/240 (34%), Positives = 108/240 (45%), Gaps = 26/240 (10%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG E+ PG +PW ++ + + +CGGSLI +VLTAAHC + A+
Sbjct: 1 IVGGDEAQPGSFPWQVSLQV---SSGKHFCGGSLISENWVLTAAHCVSN-------AKSV 50
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG ++ + + D ++L + SP L V
Sbjct: 51 RVVLGAHNIVLREGGEQKFDVKKVIVHPNYNPDTDNDIALLKLKSPVTLG------DTVR 104
Query: 138 ATSLDFKRPSGLNNAVDFK----NVWLSGKESTVQRQVDLPVWENSECDKTYFQPITDNF 193
L N G T+Q +V +PV C Y +TDN
Sbjct: 105 PICLPTASSDLPVGTTCTVSGWGNTKTLGLPDTLQ-EVTVPVVSRETCRSAYGGTVTDNM 163
Query: 194 ICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWI 253
ICAG GGKDACQGDSGGPL+ DG +GIVS+G C YPGVYT V+ YLDWI
Sbjct: 164 ICAG--AGGKDACQGDSGGPLVCS-DGE--LIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 101 bits (252), Expect = 1e-24
Identities = 67/262 (25%), Positives = 100/262 (38%), Gaps = 34/262 (12%)
Query: 17 RVVGGQESLPGRWPWMAAIFLHGTRRTEF-WCGGSLIGTRYVLTAAHCTKDTRQRPFHAQ 75
R++GG + G +P + A+ + +CGGS +G RYVLTAAHC P +
Sbjct: 32 RIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADA--SSPISSD 89
Query: 76 QFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASV---LTITSPRYLTGIPAM 132
V + D + + + Y E +Y ++ + + +P +
Sbjct: 90 VNRVVVDLNDSSQAERGHVRTIYVHE---------FYSPGNLGNDIAVLELARAASLPRV 140
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSGKESTVQR---------QVDLPVWENSECDK 183
+ S F + + S V R +V + S C +
Sbjct: 141 KITSFDASDTFLNSVT-TVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQ 199
Query: 184 TYFQ----PITDNF--ICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFG-NKCGE 236
CAG KDACQGDSGGP+ K + +Q G+VS+G CG
Sbjct: 200 YKGCANASDGATGLTGFCAG--RPPKDACQGDSGGPIFHKGEEGRVQRGVVSWGDGGCGG 257
Query: 237 PGYPGVYTRVTKYLDWIEQNMV 258
PGVYT V+ Y DWI
Sbjct: 258 TLIPGVYTNVSNYQDWIAAMTN 279
>gnl|CDD|220189 pfam09342, DUF1986, Domain of unknown function (DUF1986). This
domain is found in serine proteases and is predicted to
contain disulphide bonds.
Length = 267
Score = 38.1 bits (88), Expect = 0.002
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 29 WPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQFTVRLGDIDLRR 88
WPW+A +++ G + C G LI +VL + C DT +V LG +
Sbjct: 16 WPWIAKVYVEG----NYRCTGVLIDLSWVLVSHSCLWDTSLE---HSYISVVLGGHKTLK 68
Query: 89 EDEPSMPETYRVE 101
+ + YRV+
Sbjct: 69 SVKGPYEQIYRVD 81
>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family
protein.
Length = 1057
Score = 31.7 bits (72), Expect = 0.36
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 139 TSLDFKRPSGLNNAVDFKNVWLSGKESTVQRQVDL 173
TS F +PSG++ + D K ++++ ES+ R +DL
Sbjct: 735 TSTSFAQPSGISLSPDLKELYIADSESSSIRALDL 769
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 31.2 bits (71), Expect = 0.36
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 28 RWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDT 67
++P+ +A+ +LIG VLTA HC
Sbjct: 48 QFPY-SAVVQFEAATGRLCTAATLIGPNTVLTAGHCIYSP 86
>gnl|CDD|212956 cd12023, SH3_NoxO1_1, First or N-terminal Src homology 3 domain
of Nox Organizing protein 1. Nox Organizing protein 1
(NoxO1) is a critical regulator of enzyme kinetics of
the nonphagocytic NADPH oxidase Nox1, which catalyzes
the transfer of electrons from NADPH to molecular
oxygen to form superoxide. Nox1 is expressed in colon,
stomach, uterus, prostate, and vascular smooth muscle
cells. NoxO1 is involved in targeting activator
subunits (such as NoxA1) to Nox1. It is co-localized
with Nox1 in the membranes of resting cells and directs
the subcellular localization of Nox1. NoxO1 contains an
N-terminal Phox homology (PX) domain, tandem SH3
domains (N-SH3 and C-SH3), and a C-terminal
proline-rich region (PRR). This model characterizes the
first SH3 domain (or N-SH3) of NoxO1. The tandem SH3
domains of NoxO1 interact with the PRR of p22phox,
which also complexes with Nox1. SH3 domains are protein
interaction domains that bind to proline-rich ligands
with moderate affinity and selectivity, preferentially
to PxxP motifs. They play versatile and diverse roles
in the cell including the regulation of enzymes,
changing the subcellular localization of signaling
pathway components, and mediating the formation of
multiprotein complex assemblies.
Length = 56
Score = 28.7 bits (64), Expect = 0.53
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 56 YVLTAAHCTKDTRQRPFHAQQ 76
Y A TKDT+ +PF A
Sbjct: 2 YRCLAPFETKDTKNKPFKAAA 22
>gnl|CDD|217716 pfam03761, DUF316, Domain of unknown function (DUF316). This
family of proteins with unknown function are from
Caenorhabditis elegans. The protein has GO references
indicating the protein is a positive regulator of growth
rate and is also involved in nematode larval
development.
Length = 280
Score = 29.7 bits (67), Expect = 1.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 206 CQGDSGGPLMMKKDGYWMQVGIVSFGN 232
C+GD GGPL+ G +G + GN
Sbjct: 227 CKGDDGGPLIKNVSGKNTVIGFGATGN 253
>gnl|CDD|184766 PRK14610, PRK14610, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 283
Score = 28.1 bits (63), Expect = 3.8
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 150 NNAVDFKNVW-LSGKESTVQRQVDLPVWENSECDKTYFQPITDNFICAGLREGGKDA 205
N V+F N ++ +TVQR + L + + Y + I + + AGL G DA
Sbjct: 50 NRGVEFVNSLKINRYNNTVQRAIGLLLRHSPVRTNVYVKVIKNIPVSAGLAGGSADA 106
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 28.5 bits (63), Expect = 4.4
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 193 FICAGLREGGKDACQGDSGGPL--MMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYL 250
FICA + G + D PL + KK G W+ V GN C P Y K++
Sbjct: 290 FICATV--GTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEY-------RKFI 340
Query: 251 DWIE 254
D IE
Sbjct: 341 DGIE 344
>gnl|CDD|233958 TIGR02636, galM_Leloir, galactose mutarotase. Members of this
protein family act as galactose mutarotase (D-galactose
1-epimerase) and participate in the Leloir pathway for
galactose/glucose interconversion. All members of the
seed alignment for this model are found in gene clusters
with other enzymes of the Leloir pathway. This enzyme
family belongs to the aldose 1-epimerase family,
described by Pfam model pfam01263. However, the enzyme
described as aldose 1-epimerase itself (EC 5.1.3.3) is
called broadly specific for D-glucose, L-arabinose,
D-xylose, D-galactose, maltose and lactose. The
restricted genome context for genes in this family
suggests members should act primarily on D-galactose.
Length = 336
Score = 27.7 bits (62), Expect = 7.0
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 118 LTITSPRYL----TGIPAMVLF-VEATSLDFKRPSGLNNAVDFKNVWLSGKESTVQRQVD 172
L + + RYL GIP L V+ TS DF++ +L+ + + + D
Sbjct: 184 LQLNADRYLPLDEEGIPLGQLKPVDGTSFDFRKEK------AIGQDFLANDQQQLAKGYD 237
Query: 173 LPVWENSECD 182
N E
Sbjct: 238 HAFLLNGERL 247
>gnl|CDD|239750 cd03781, MATH_TRAF4, Tumor Necrosis Factor Receptor
(TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily,
TRAF domain, C-terminal MATH subdomain; composed of
proteins with similarity to human TRAF4, including the
Drosophila protein DTRAF1. TRAF molecules serve as
adapter proteins that link TNFRs and downstream kinase
cascades resulting in the activation of transcription
factors and the regulation of cell survival,
proliferation and stress responses. TRAF4 is highly
expressed during embryogenesis, especially in the
central and peripheral nervous system. Studies using
TRAF4-deficient mice show that TRAF4 is required for
neurogenesis, as well as the development of the trachea
and the axial skeleton. In addition, TRAF4 augments
nuclear factor-kappaB activation triggered by GITR
(glucocorticoid-induced TNFR), a receptor expressed in
T-cells, B-cells and macrophages. It also participates
in counteracting the signaling mediated by Toll-like
receptors through its association with TRAF6 and TRIF.
DTRAF1 plays a pivotal role in the development of eye
imaginal discs and photosensory neuron arrays in
Drosophila. TRAF4 contains a RING finger domain, seven
zinc finger domains, and a TRAF domain. The TRAF domain
can be divided into a more divergent N-terminal alpha
helical region (TRAF-N), and a highly conserved
C-terminal MATH subdomain (TRAF-C) with an
eight-stranded beta-sandwich structure. TRAF-N mediates
trimerization while TRAF-C interacts with receptors.
Length = 154
Score = 27.1 bits (60), Expect = 7.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 213 PLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVT 247
P + GY +QV GN GE + VY RV
Sbjct: 29 PFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVL 63
>gnl|CDD|215244 PLN02445, PLN02445, anthranilate synthase component I.
Length = 523
Score = 27.3 bits (61), Expect = 9.9
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 96 ETYRVEEGLNPCPSDYYYQA--SVLTITSPRYLT 127
E YR +NP P Y QA +L +SP LT
Sbjct: 273 EVYRALRIVNPSPYMIYLQARGCILVASSPEILT 306
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.459
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,295,757
Number of extensions: 1220520
Number of successful extensions: 787
Number of sequences better than 10.0: 1
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 19
Length of query: 258
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 163
Effective length of database: 6,723,972
Effective search space: 1096007436
Effective search space used: 1096007436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)