RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7305
(258 letters)
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 251 bits (644), Expect = 4e-84
Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 39/277 (14%)
Query: 7 GCGRPDVPKFRVVGGQESLPGRWPWMAAI-FLHGTRRTEFWCGGSLIGTRYVLTAAHCTK 65
CG V +++ G +++P +PW A I + + + +F CGGSLI RY++TAAHC
Sbjct: 13 DCGYQ-VEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVA 71
Query: 66 DTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITS-PR 124
R VRLG+ + + + + C D + P
Sbjct: 72 G-RVLRVVGALNKVRLGEWNTATDPDC--------YGAVRVCVPDKPIDLGIEETIQHPD 122
Query: 125 YLTGIP------AMVLFVEATSLDFKR-------PSGLNNAVDFKNVWLSG-------KE 164
Y+ G A++ ++F P + + + G +
Sbjct: 123 YVDGSKDRYHDIALIRL--NRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQY 180
Query: 165 STVQRQVDLPVWENSECDKTYFQP---ITDNFICAGLREGGKDACQGDSGGPLMMKK-DG 220
ST+++++ +PV +C KT+ + + +CAG E KD+C GDSGGPL+ ++ +
Sbjct: 181 STIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAG-GEKAKDSCGGDSGGPLLAERANQ 239
Query: 221 YWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
+ G+VSFG CG G+PG+YT+V KY DWIE N+
Sbjct: 240 QFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 245 bits (627), Expect = 6e-80
Identities = 68/278 (24%), Positives = 110/278 (39%), Gaps = 42/278 (15%)
Query: 7 GCGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKD 66
CG RV G E PWMA + + F CGG++I RY+LTAAHC
Sbjct: 110 DCGNF--LSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHG 167
Query: 67 TRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYL 126
+ + +RLG+ + E++ ++ P + + + +Y
Sbjct: 168 LQND-----LYEIRLGEHRISTEEDC---RQQGRKKKCAPPVVNVGIEK---HLIHEKYD 216
Query: 127 TG-----IPAMVLFVEATSL-DFKRP-------SGLNNAVDFKNVWLSG-------KEST 166
I A++ + +P A +++G S
Sbjct: 217 ARHIMHDI-ALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGSSSD 275
Query: 167 VQRQVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMK------KDG 220
V Q ++P+ S C + Y + + + +C G +D+C+GDSGGPL
Sbjct: 276 VLLQANVPLQPRSACSQAYRRAVPLSQLCVG-GGDLQDSCKGDSGGPLQAPAQYLGEYAP 334
Query: 221 YWMQVGIVSFG-NKCGEPGYPGVYTRVTKYLDWIEQNM 257
++ GIVS G CG+ PG+YT V +Y+ WI M
Sbjct: 335 KMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTM 372
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 239 bits (611), Expect = 1e-79
Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 46/259 (17%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
VVGG+++ PG++PW + + +CGGS++ ++++TAAHC + +
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKV----DAFCGGSIVNEKWIVTAAHCVETGVK-------I 49
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAM 132
TV G+ ++ + V N + Y + ++L + P L
Sbjct: 50 TVVAGEHNIEETEHTEQ--KRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLN----- 102
Query: 133 VLFVEATSLDFKRP------SGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWEN 178
+ P N + F + ++SG + + V + + +P+ +
Sbjct: 103 ---------SYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDR 153
Query: 179 SECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPG 238
+ C ++ IT+N CAG EGG+D+CQGDSGGP + + +G GI+S+G +C G
Sbjct: 154 ATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKG 213
Query: 239 YPGVYTRVTKYLDWIEQNM 257
G+YT+V++Y++WI++
Sbjct: 214 KYGIYTKVSRYVNWIKEKT 232
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 236 bits (604), Expect = 1e-78
Identities = 72/263 (27%), Positives = 112/263 (42%), Gaps = 54/263 (20%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGGQE G PW A + E +CGG+++ Y+LTAAHC ++ F
Sbjct: 1 IVGGQECKDGECPWQALLI---NEENEGFCGGTILSEFYILTAAHCLYQAKR-------F 50
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDY-----------YYQASVLTI- 120
VR+GD + +E+ + VE D+ ++ +V
Sbjct: 51 KVRVGDRNTEQEEGGEA--VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPAC 108
Query: 121 ------TSPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSGKESTVQRQVDLP 174
+T +V SG F G++ST + +++P
Sbjct: 109 LPERDWAESTLMTQKTGIV-------------SG------FGRTHEKGEQSTRLKMLEVP 149
Query: 175 VWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKC 234
+ + C + IT N CAG +DACQGDSGGP + + + GIVS+G C
Sbjct: 150 YVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGC 209
Query: 235 GEPGYPGVYTRVTKYLDWIEQNM 257
G G+YT+VT +L WI+++M
Sbjct: 210 ARKGKYGIYTKVTAFLKWIDRSM 232
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 234 bits (600), Expect = 5e-78
Identities = 68/260 (26%), Positives = 114/260 (43%), Gaps = 46/260 (17%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG ++ G WPW+ ++ CG SL+ + ++++AAHC P ++
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDD----RLLCGASLVSSDWLVSAAHCVYGRNLEPS---KW 53
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIP----AMV 133
T LG P ++E + +P Y AM+
Sbjct: 54 TAILGLHMKSNLTSPQ-TVPRLIDE----------------IVINPHYNRRRKDNDIAMM 96
Query: 134 LFVEATSLDFKR-------PSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWEN 178
+++ P +N ++G + + ++ D+P+ N
Sbjct: 97 HL--EFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSN 154
Query: 179 SECDKTYFQ-PITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEP 237
C + + IT+N ICAG EGG D+CQGDSGGPLM +++ W G+ SFG +C P
Sbjct: 155 ERCQQQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALP 214
Query: 238 GYPGVYTRVTKYLDWIEQNM 257
PGVY RV+++ +WI+ +
Sbjct: 215 NRPGVYARVSRFTEWIQSFL 234
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 234 bits (598), Expect = 1e-77
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 36/257 (14%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG ++ G +P+ + + +CG S+ Y +TA HC +
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYE--NPSGL 58
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAM 132
+ G++D+ + + V E + + S+L ++
Sbjct: 59 QIVAGELDMSVNEGS--EQIITVSKIILHENFDY--NLLDNDISLLKLSGSLTFN----- 109
Query: 133 VLFVEATSLDFKRPSGL--NNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECD 182
D P L +V ++G V ++V +P+ + +C
Sbjct: 110 ---------DNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCR 160
Query: 183 KTYFQ-PITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPG 241
Y I D+ ICAG+ EGGKD+CQGDSGGPL G GIVS+G C PGYPG
Sbjct: 161 ADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPG 220
Query: 242 VYTRVTKYLDWIEQNMV 258
VYT V+ ++DWI+ N V
Sbjct: 221 VYTEVSYHVDWIKANAV 237
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 234 bits (598), Expect = 1e-77
Identities = 77/255 (30%), Positives = 119/255 (46%), Gaps = 31/255 (12%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQ-RPFHAQQ 76
VVGG ++ G WPW ++ G CG SLI ++++AAHC D R R Q
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQG---HICGASLISPNWLVSAAHCYIDDRGFRYSDPTQ 57
Query: 77 FTVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPA 131
+T LG D + P + + R++ N DY ++L + P +
Sbjct: 58 WTAFLGLHDQSQRSAPGV-QERRLKRIISHPFFNDFTFDY--DIALLELEKPAEYSS--- 111
Query: 132 MVLFVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECDK 183
V SL P + K +W++G + + ++ ++ V + C+
Sbjct: 112 ---MVRPISL----PDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCEN 164
Query: 184 TYFQPITDNFICAGLREGGKDACQGDSGGPLM-MKKDGYWMQVGIVSFGNKCGEPGYPGV 242
Q IT +C G GG D+CQGDSGGPL ++ DG Q G+VS+G+ C + PGV
Sbjct: 165 LLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGV 224
Query: 243 YTRVTKYLDWIEQNM 257
YTR+ + DWI++N
Sbjct: 225 YTRLPLFRDWIKENT 239
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 236 bits (604), Expect = 1e-76
Identities = 70/287 (24%), Positives = 112/287 (39%), Gaps = 57/287 (19%)
Query: 7 GCGR--PDVPKFRVVGGQ-ESLPGRWPWMAAIF----LHGTRRTEFWCGGSLIGTRYVLT 59
CG F++ G E+ G +PWM A+ + G+ + CGGSLI VLT
Sbjct: 117 FCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLT 176
Query: 60 AAHCTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEG-LNPCPSDYYYQAS-- 116
AHC + +R G+ D E E + ++ + ++ ++ +
Sbjct: 177 GAHCVNSYQSNL---DAIKIRAGEWDTLTEKERLPYQERKIRQVIIHS---NFNPKTVVN 230
Query: 117 ---VLTITSPRYLTGIPAMVLFVEATSLDFKRPSGL---NNAVDFKNVWLSG-------- 162
+L + P D L + D + SG
Sbjct: 231 DVALLLLDRPLVQA--------------DNIGTICLPQQSQIFDSTECFASGWGKKEFGS 276
Query: 163 --KESTVQRQVDLPVWENSECDKTYFQ-------PITDNFICAGLREGGKDACQGDSGGP 213
+ S + +++ LP + +C + F+CAG E GKD C GD G P
Sbjct: 277 RHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGG-EQGKDTCTGDGGSP 335
Query: 214 LMM---KKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
L + +MQ+GIV++G CG+ PGVY V + +WI+Q M
Sbjct: 336 LFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEM 382
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 232 bits (594), Expect = 2e-76
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 29/276 (10%)
Query: 3 SCLHGCGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAH 62
R+V G ++ G PW +F + CG SLI R+VLTAAH
Sbjct: 17 KTERELLESY-IDGRIVEGSDAEIGMSPWQVMLFRKSPQE--LLCGASLISDRWVLTAAH 73
Query: 63 C-TKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQAS----- 116
C + F VR+G R E ++ + +E+ Y ++ +
Sbjct: 74 CLLYPPWDKNFTENDLLVRIGKHS-RTRYERNIEKISMLEKIY--IHPRYNWRENLDRDI 130
Query: 117 -VLTITSPRYLTG--IPAMVLFVEATSLDFKRPSGLN-------NAVDFKNVWLSGKEST 166
++ + P + P + E + +G N + + + +
Sbjct: 131 ALMKLKKPVAFSDYIHPVCLPDRETAASLL--QAGYKGRVTGWGNLKETWTANVGKGQPS 188
Query: 167 VQRQVDLPVWENSECDKTYFQPITDNFICAGLRE---GGKDACQGDSGGPLMMKK--DGY 221
V + V+LP+ E C + ITDN CAG + DAC+GDSGGP +MK +
Sbjct: 189 VLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNR 248
Query: 222 WMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
W Q+GIVS+G C G G YT V + WI++ +
Sbjct: 249 WYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 284
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 228 bits (584), Expect = 2e-75
Identities = 67/258 (25%), Positives = 116/258 (44%), Gaps = 38/258 (14%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++ G+ + G PW + + CG LI +VLTAAHC ++++
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKK---LACGAVLIHPSWVLTAAHCMDESKK-------L 50
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQAS-----VLTITSPRYLTGIPAM 132
VRLG+ DLRR ++ + ++E +Y + +L + P L+
Sbjct: 51 LVRLGEYDLRRWEKWEL--DLDIKEVF--VHPNYSKSTTDNDIALLHLAQPATLSQ---- 102
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSG-------------KESTVQRQVDLPVWENS 179
+ L + + ++G + V + +PV ++
Sbjct: 103 --TIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHN 160
Query: 180 ECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGY 239
EC + +++N +CAG+ +DAC+GDSGGP++ G W VG+VS+G CG
Sbjct: 161 ECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHN 220
Query: 240 PGVYTRVTKYLDWIEQNM 257
GVYT+V++YLDWI ++
Sbjct: 221 YGVYTKVSRYLDWIHGHI 238
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 228 bits (584), Expect = 2e-75
Identities = 71/261 (27%), Positives = 112/261 (42%), Gaps = 28/261 (10%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHC-TKDTRQRPFHAQQ 76
+V G ++ G PW +F + CG SLI R+VLTAAHC + F
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQE--LLCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 77 FTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQAS------VLTITSPRYLTG-- 128
VR+G R E ++ + +E+ Y ++ + ++ + P +
Sbjct: 59 LLVRIGKHS-RTRYERNIEKISMLEKIY--IHPRYNWRENLDRDIALMKLKKPVAFSDYI 115
Query: 129 IPAMVLFVEATSLDFKRPSGLN-------NAVDFKNVWLSGKESTVQRQVDLPVWENSEC 181
P + E + +G N + + + +V + V+LP+ E C
Sbjct: 116 HPVCLPDRETAASLL--QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC 173
Query: 182 DKTYFQPITDNFICAGLRE---GGKDACQGDSGGPLMMKK--DGYWMQVGIVSFGNKCGE 236
+ ITDN CAG + DAC+GDSGGP +MK + W Q+GIVS+G C
Sbjct: 174 KDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDR 233
Query: 237 PGYPGVYTRVTKYLDWIEQNM 257
G G YT V + WI++ +
Sbjct: 234 DGKYGFYTHVFRLKKWIQKVI 254
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 225 bits (577), Expect = 2e-74
Identities = 67/269 (24%), Positives = 108/269 (40%), Gaps = 59/269 (21%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG+ G PW + ++G CGG+LI T +V++AAHC + +
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGA----QLCGGTLINTIWVVSAAHCFDKIKN----WRNL 52
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDY-----------YYQASVLTIT 121
LG+ DL D + RV P +++ V+ +
Sbjct: 53 IAVLGEHDLSEHDGDEQ--SRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLC 110
Query: 122 SPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDL 173
P E T + + +SG + +++
Sbjct: 111 LP-------------ERTFSERTLAFV-------RFSLVSGWGQLLDRGATALELMVLNV 150
Query: 174 PVWENSECDKTYFQP-----ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIV 228
P +C + + IT+ CAG +G KD+C+GDSGGP G W GIV
Sbjct: 151 PRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIV 210
Query: 229 SFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
S+G C G+ GVYTRV++Y++W+++ M
Sbjct: 211 SWGQGCATVGHFGVYTRVSQYIEWLQKLM 239
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 225 bits (576), Expect = 6e-74
Identities = 67/270 (24%), Positives = 115/270 (42%), Gaps = 32/270 (11%)
Query: 7 GCGRPDV-PKFRVVGGQESLPGRWPWMAAIFLHGTRRTE-FWCGGSLIGTRYVLTAAHCT 64
CG+ + P+F+++GG+ + PW AAI+ + + CGGSL+ +V++A HC
Sbjct: 12 QCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCF 71
Query: 65 KDTRQRPFHAQQFTVRLGDIDLRREDEPSMP---ETYRVEEGLNPCPSDYYYQASVLTIT 121
D + + + V LG L + M E + + + ++ ++L I
Sbjct: 72 IDYPK----KEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIR 127
Query: 122 SPRYLTGIPAMVLF---VEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQR 169
S ++ L PS N+ + ++G +
Sbjct: 128 SK-----EGRCAQPSRTIQTICL----PSMYNDPQFGTSCEITGFGKENSTDYLYPEQLK 178
Query: 170 QVDLPVWENSECDKTYFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGI 227
+ + + EC + ++ +T +CA + D+CQGDSGGPL+ G GI
Sbjct: 179 MTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGI 238
Query: 228 VSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
VS+G C PGVYTRV+ +L WI +
Sbjct: 239 VSWGRGCALKDKPGVYTRVSHFLPWIRSHT 268
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 223 bits (570), Expect = 1e-73
Identities = 62/255 (24%), Positives = 95/255 (37%), Gaps = 49/255 (19%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
VVGG + G +P+M + CGG+L VLTAAHC +
Sbjct: 1 VVGGTRAAQGEFPFMVRL--------SMGCGGALYAQDIVLTAAHCVSGSGNNT----SI 48
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAM 132
T G +DL+ R G Y +++ + P +
Sbjct: 49 TATGGVVDLQSSSA----VKVRSTKVLQAPGFTK--ETYGKDWALIKLAQPINQPTLK-- 100
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECDKT 184
AT+ + + ++G + + ++P ++ C +
Sbjct: 101 ----IATTTAY----------NQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSS 146
Query: 185 Y-FQPITDNFICAGLREGGKDACQGDSGGPLMMK-KDGYWMQVGIVSFGNKCGEPGYPGV 242
F + + ICAG +D CQGDSGGP+ K W+QVGIVS+G C G GV
Sbjct: 147 SSFILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGV 206
Query: 243 YTRVTKYLDWIEQNM 257
YT V+ + I
Sbjct: 207 YTEVSTFASAIASAA 221
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 228 bits (583), Expect = 3e-73
Identities = 72/274 (26%), Positives = 114/274 (41%), Gaps = 25/274 (9%)
Query: 3 SCLHGCGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAH 62
R+V G ++ G PW +F + CG SLI R+VLTAAH
Sbjct: 152 KTERELLESY-IDGRIVEGSDAEIGMSPWQVMLFRKSPQE--LLCGASLISDRWVLTAAH 208
Query: 63 C-TKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEG-LNP---CPSDYYYQASV 117
C + F VR+G R E ++ + +E+ ++P + ++
Sbjct: 209 CLLYPPWDKNFTENDLLVRIGKHS-RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIAL 267
Query: 118 LTITSPRYLTG--IPAMVLFVEATSLDFKRPSGLN-------NAVDFKNVWLSGKESTVQ 168
+ + P + P + E + +G N + + + +V
Sbjct: 268 MKLKKPVAFSDYIHPVCLPDRETAASLL--QAGYKGRVTGWGNLKETWTANVGKGQPSVL 325
Query: 169 RQVDLPVWENSECDKTYFQPITDNFICAGLRE---GGKDACQGDSGGPLMMKK--DGYWM 223
+ V+LP+ E C + ITDN CAG + DAC+GDSGGP +MK + W
Sbjct: 326 QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWY 385
Query: 224 QVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
Q+GIVS+G C G G YT V + WI++ +
Sbjct: 386 QMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 419
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 225 bits (574), Expect = 2e-72
Identities = 78/272 (28%), Positives = 122/272 (44%), Gaps = 40/272 (14%)
Query: 7 GCGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKD 66
CGR +P R+VGG+++ GRWPW ++ G CGGSL+ +VLTAAHC +
Sbjct: 107 DCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGA----HLCGGSLLSGDWVLTAAHCFPE 162
Query: 67 TRQRPFHAQQFTVRLGDIDLRREDEPSMP-------ETYRVEEGLNPCPSDYYYQASVLT 119
+ ++ V G + + Y N + +++
Sbjct: 163 RNRVLS---RWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSN--DIALVH 217
Query: 120 ITSPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQV 171
++SP LT +++ L P+ VD K ++G +++ V ++
Sbjct: 218 LSSPLPLTE------YIQPVCL----PAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEA 267
Query: 172 DLPVWENSECDKTYFQP--ITDNFICAGLREGGKDACQGDSGGPLM----MKKDGYWMQV 225
+P+ N C+ F I CAG EGG DACQGDSGGP + + + W
Sbjct: 268 RVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLC 327
Query: 226 GIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
GIVS+G C PGVYT+V+ + +WI Q +
Sbjct: 328 GIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 222 bits (568), Expect = 5e-72
Identities = 71/285 (24%), Positives = 104/285 (36%), Gaps = 59/285 (20%)
Query: 3 SCLHGCGRPDVPKF---RVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLT 59
CL CG+P P R++GGQ++ G +PW +HG GG+L+G R++LT
Sbjct: 72 RCLPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGR------GGGALLGDRWILT 125
Query: 60 AAHCTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLT 119
AAH V LG ++ + + +
Sbjct: 126 AAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL---GNHPIRR----------------V 166
Query: 120 ITSPRYLTGIP-------AMVLFVEATSLDFKR-------PSGLNNAVDFKNVWLSG--- 162
P Y A++ S+ P ++SG
Sbjct: 167 SVHPDYRQDESYNFEGDIALLEL--ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV 224
Query: 163 ---KESTVQRQVDLPVWENSECDKTY-----FQPITDNFICAGLREGGKDACQGDSGGPL 214
K + R V LPV C+ + N CAG +DACQGDSGG
Sbjct: 225 MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVF 284
Query: 215 MMK--KDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
++ W+ GIVS+G C G YT+V Y+DWI++ M
Sbjct: 285 AVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 327
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 218 bits (558), Expect = 1e-71
Identities = 65/278 (23%), Positives = 101/278 (36%), Gaps = 77/278 (27%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+ GGQ++ PG +PW I G+L+ +VLTAAH + +
Sbjct: 1 IYGGQKAKPGDFPWQVLI------LGGTTAAGALLYDNWVLTAAHAVYEQKHDAS---AL 51
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
+R+G + E Y
Sbjct: 52 DIRMGTLKRLSPHY----TQAWSEA----------------VFIHEGY----------TH 81
Query: 138 ATSLDF-------KRPSGLNNAV--------DFKNVWLSGKESTVQ-------------- 168
D +N+ + + ++ + T
Sbjct: 82 DAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNL 141
Query: 169 RQVDLPVWENSECDKTYFQP------ITDNFICAGLREGGKDACQGDSGGPLMM--KKDG 220
VD+P+ ++ +C Y +P +T N +CAGL GGKD+C+GDSGG L+ +
Sbjct: 142 MYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETE 201
Query: 221 YWMQVGIVSFGNK-CGEPGYPGVYTRVTKYLDWIEQNM 257
W GIVS+G+ CGE G GVYT+V Y+ WIE +
Sbjct: 202 RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 217 bits (556), Expect = 2e-71
Identities = 65/267 (24%), Positives = 97/267 (36%), Gaps = 56/267 (20%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GGQ++ G +PW +HG GG+L+G R++LTAAH
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHGR------GGGALLGDRWILTAAHTLYPKEHEAQSNASL 54
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIP------- 130
V LG ++ +E + + P Y
Sbjct: 55 DVFLGHTNV---EELMKLGNHPIRR----------------VSVHPDYRQDESYNFEGDI 95
Query: 131 AMVLFVEATSLDFKR-------PSGLNNAVDFKNVWLSG------KESTVQRQVDLPVWE 177
A++ S+ P ++SG K + R V LPV
Sbjct: 96 ALLEL--ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVAN 153
Query: 178 NSECDKTYFQP-----ITDNFICAGLREGGKDACQGDSGGPLMMK--KDGYWMQVGIVSF 230
C+ + N CAG +DACQGDSGG ++ W+ GIVS+
Sbjct: 154 PQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSW 213
Query: 231 GNKCGEPGYPGVYTRVTKYLDWIEQNM 257
G C G YT+V Y+DWI++ M
Sbjct: 214 GIGCSRG--YGFYTKVLNYVDWIKKEM 238
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 216 bits (553), Expect = 6e-71
Identities = 74/258 (28%), Positives = 107/258 (41%), Gaps = 41/258 (15%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG E+ P +PW ++ + +CGGS+I R+V+ AAHC +
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDS--HFCGGSIINDRWVVCAAHCMQG-----EAPALV 53
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAM 132
++ +G+ D T+ V+ E +P + SV+
Sbjct: 54 SLVVGEHDSSAASTVRQ--THDVDSIFVNENYDP--ATLENDVSVIKTAVAITFDI---- 105
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQRQVDLPVWENSECDK 183
V P N ++ SG V R V L + N+ CD
Sbjct: 106 --NVGPICA----PDP-ANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDA 158
Query: 184 TYFQP-ITDNFICAGLREG--GKDACQGDSGGPLMMK-KDGYWMQVGIVSFGNKCGEPGY 239
Y I D+ ICA G +D+CQGDSGGPL +K G + VGIVS+G C GY
Sbjct: 159 VYTSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGY 217
Query: 240 PGVYTRVTKYLDWIEQNM 257
PGVY+RV + WI +
Sbjct: 218 PGVYSRVGFHAGWITDTI 235
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 221 bits (564), Expect = 1e-70
Identities = 70/285 (24%), Positives = 104/285 (36%), Gaps = 59/285 (20%)
Query: 3 SCLHGCGRPDVPKF---RVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLT 59
CL CG+P P +++GGQ++ G +PW +HG GG+L+G R++LT
Sbjct: 140 RCLPVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHGR------GGGALLGDRWILT 193
Query: 60 AAHCTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLT 119
AAH V LG ++ + + +
Sbjct: 194 AAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL---GNHPIRR----------------V 234
Query: 120 ITSPRYLTGIP-------AMVLFVEATSLDFKR-------PSGLNNAVDFKNVWLSG--- 162
P Y A++ S+ P ++SG
Sbjct: 235 SVHPDYRQDESYNFEGDIALLEL--ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV 292
Query: 163 ---KESTVQRQVDLPVWENSECDKTY-----FQPITDNFICAGLREGGKDACQGDSGGPL 214
K + R V LPV C+ + N CAG +DACQGDSGG
Sbjct: 293 MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVF 352
Query: 215 MMK--KDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
++ W+ GIVS+G C G YT+V Y+DWI++ M
Sbjct: 353 AVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 395
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 215 bits (550), Expect = 2e-70
Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 31/258 (12%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTE-FWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQ 76
++GG+ + PW AAI+ + + CGGSLI +V++A HC D + +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPK----KED 56
Query: 77 FTVRLGDIDLRREDEPSMP---ETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMV 133
+ V LG L + M E + + + ++ ++L I S
Sbjct: 57 YIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSK-----EGRCA 111
Query: 134 LF---VEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQRQVDLPVWENSEC 181
++ SL PS N+ + ++G + + + + EC
Sbjct: 112 QPSRTIQTISL----PSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHREC 167
Query: 182 DKTYFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGY 239
+ ++ +T +CA + D+CQGDSGGPL+ G GIVS+G C
Sbjct: 168 QQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDK 227
Query: 240 PGVYTRVTKYLDWIEQNM 257
PGVYTRV+ +L WI +
Sbjct: 228 PGVYTRVSHFLPWIRSHT 245
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 214 bits (547), Expect = 4e-70
Identities = 72/248 (29%), Positives = 109/248 (43%), Gaps = 32/248 (12%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++ G E+ G +P+ A + + + WCGGSLI +++LTAAHC D A
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD-------AVSV 53
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG + E NP Y +++ I Y I + L
Sbjct: 54 VVYLGSAVQYEGEAVVNSERIISHSMFNP--DTYLNDVALIKIPHVEYTDNIQPIRL--- 108
Query: 138 ATSLDFKRPSGLNNAVDFKNVW--LSG-----KESTVQRQVDLPVWENSECDKTYF-QPI 189
PSG F+N+W +SG ++ + + V +N C + Y I
Sbjct: 109 --------PSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGII 160
Query: 190 TDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCG-EPGYPGVYTRVTK 248
++ IC GK C GDSGGP ++ + +G+VSF + G E G P ++RVT
Sbjct: 161 VESTICGDT-SDGKSPCFGDSGGPFVL--SDKNLLIGVVSFVSGAGCESGKPVGFSRVTS 217
Query: 249 YLDWIEQN 256
Y+DWI+QN
Sbjct: 218 YMDWIQQN 225
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 213 bits (546), Expect = 4e-70
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 38/250 (15%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG + G +P++ +I +G WCGGSL+ VLTAAHC + F
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGG----PWCGGSLLNANTVLTAAHCVSG-----YAQSGF 51
Query: 78 TVRLGDIDLRREDEPSMPETYRVEE-GLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFV 136
+R G + S T + ++P S ++L +++ G +
Sbjct: 52 QIRAGSLSRT-----SGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGG------NI 100
Query: 137 EATSLDFKRPSGLNNAVDFKNVWLSG----KESTVQ-----RQVDLPVWENSECDKTYFQ 187
L + ++ V + ++G E +V +P+ + C Y
Sbjct: 101 GYARL----AASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGT 156
Query: 188 -PITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRV 246
IT+ CAG+ GGKD+CQGDSGGP++ +G VS+GN C P Y GVY V
Sbjct: 157 SAITNQMFCAGVSSGGKDSCQGDSGGPIVDSS---NTLIGAVSWGNGCARPNYSGVYASV 213
Query: 247 TKYLDWIEQN 256
+I+
Sbjct: 214 GALRSFIDTY 223
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 216 bits (551), Expect = 5e-70
Identities = 77/288 (26%), Positives = 110/288 (38%), Gaps = 66/288 (22%)
Query: 4 CLHGCGRPDV----PKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLT 59
CGR + R++GG SLPG PW+AAI + +C GSL+ T +V++
Sbjct: 18 GRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-----YIGDSFCAGSLVHTCWVVS 72
Query: 60 AAHCTKDTRQRPFHAQQFTVRLGDIDLRREDEPSM---------PETYRVEEGLN----- 105
AAHC +V LG R + + Y V +
Sbjct: 73 AAHCF----SHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVL 128
Query: 106 -----PCPSDYYYQASVLTITSPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWL 160
V I P F P+G +
Sbjct: 129 IRLKKKGDRCATRSQFVQPICLP--------------EPGSTF--PAG-------HKCQI 165
Query: 161 SG---------KESTVQRQVDLPVWENSECDKTYFQP--ITDNFICAGLREGGKDACQGD 209
+G S+ R+ +P+ + +C I+ N +CAG + DACQGD
Sbjct: 166 AGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGD 225
Query: 210 SGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
SGGPL +K+G GI+S+G+ CG PGVYTRV Y+DWI +
Sbjct: 226 SGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 273
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 219 bits (560), Expect = 6e-70
Identities = 68/294 (23%), Positives = 105/294 (35%), Gaps = 78/294 (26%)
Query: 3 SCLHGCGRPDVPKF-RVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAA 61
C CG ++ GGQ++ PG +PW I G+L+ +VLTAA
Sbjct: 146 VCEPVCGLSARTTGGQIYGGQKAKPGDFPWQVLI------LGGTTAAGALLYDNWVLTAA 199
Query: 62 HCTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTIT 121
H + + +R+G + E
Sbjct: 200 HAVYEQKHDAS---ALDIRMGTLKRLSPHY----TQAWSEA----------------VFI 236
Query: 122 SPRYLTGIPAMVLFVEATSLDF-------KRPSGLNNAV--------DFKNVWLSGKEST 166
Y D +N+ + + ++ + T
Sbjct: 237 HEGY----------THDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGT 286
Query: 167 V--------------QRQVDLPVWENSECDKTYFQP------ITDNFICAGLREGGKDAC 206
VD+P+ ++ +C Y +P +T N +CAGL GGKD+C
Sbjct: 287 ASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSC 346
Query: 207 QGDSGGPLMM--KKDGYWMQVGIVSFGNK-CGEPGYPGVYTRVTKYLDWIEQNM 257
+GDSGG L+ + W GIVS+G+ CGE G GVYT+V Y+ WIE +
Sbjct: 347 RGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 400
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 213 bits (546), Expect = 7e-70
Identities = 80/260 (30%), Positives = 116/260 (44%), Gaps = 45/260 (17%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG S+ G WPW + + CGGS+IG +++LTAAHC +
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVE----SPKIL 55
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIP----AMV 133
V G ++ E + + V+E I +Y A++
Sbjct: 56 RVYSGILNQSEIKEDTS--FFGVQE----------------IIIHDQYKMAESGYDIALL 97
Query: 134 LFVEATSLDFKR-------PSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWEN 178
T++++ PS V + + W++G K ++ +P+ N
Sbjct: 98 KL--ETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTN 155
Query: 179 SECDKTYFQP-ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEP 237
EC K Y IT ICAG REGGKDAC+GDSGGPL K + W VGI S+G C +
Sbjct: 156 EECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQR 215
Query: 238 GYPGVYTRVTKYLDWIEQNM 257
PGVYT V +Y+DWI +
Sbjct: 216 ERPGVYTNVVEYVDWILEKT 235
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 214 bits (546), Expect = 1e-69
Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 71/279 (25%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTR--------- 68
+ G+ + G PW+A + + +CGGSL+G+ +++TAAHC +
Sbjct: 1 IFNGRPAQKGTTPWIAMLS---HLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRD 57
Query: 69 QRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTG 128
F + LG R DE + V+ T P+Y
Sbjct: 58 SDLLSPSDFKIILGKHWRLRSDENE--QHLGVKH----------------TTLHPQY--- 96
Query: 129 IPAMVLFVEATSLDF-------KRPSGLNNAV--------DF---KNVWLSG-------K 163
+ + + LN V V +SG +
Sbjct: 97 --------DPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGKQFLQR 148
Query: 164 ESTVQRQVDLPVWENSECDKTY---FQPITDNFICAGLREGGKDACQGDSGGPLMM--KK 218
++++P+ ++S C K Y + +T + ICAG +EGGKDAC GDSGGP++ ++
Sbjct: 149 FPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRE 208
Query: 219 DGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
G W VG VS+G+ CG+ GVY+ + DWI++
Sbjct: 209 RGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVT 247
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 224 bits (572), Expect = 2e-69
Identities = 83/274 (30%), Positives = 121/274 (44%), Gaps = 47/274 (17%)
Query: 4 CLHGCGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHC 63
+ C P R+VGG S+ G WPW + + CGGS+IG +++LTAAHC
Sbjct: 376 MDNECTTKIKP--RIVGGTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHC 432
Query: 64 TKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSP 123
+ V G ++ E + + V+E I
Sbjct: 433 FYGVE----SPKILRVYSGILNQSEIKEDTS--FFGVQE----------------IIIHD 470
Query: 124 RYLTGIP----AMVLFVEATSLDFKR-------PSGLNNAVDFKNVWLSG--------KE 164
+Y A++ T++++ PS + V + + W++G K
Sbjct: 471 QYKMAESGYDIALLKL--ETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKI 528
Query: 165 STVQRQVDLPVWENSECDKTYFQP-ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWM 223
++ +P+ N EC K Y IT ICAG REGGKDAC+GDSGGPL K + W
Sbjct: 529 QNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWH 588
Query: 224 QVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
VGI S+G C + PGVYT V +Y+DWI +
Sbjct: 589 LVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 213 bits (544), Expect = 2e-69
Identities = 81/260 (31%), Positives = 123/260 (47%), Gaps = 45/260 (17%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG ES G WPW ++ + T + CGGSLIG ++VLTAAHC +
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQ-RHLCGGSLIGHQWVLTAAHCFDGLPL----QDVW 55
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIP----AMV 133
+ G ++L + + +++E I Y A++
Sbjct: 56 RIYSGILELSDITKDTP--FSQIKE----------------IIIHQNYKVSEGNHDIALI 97
Query: 134 LFVEATSLDFKR-------PSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWEN 178
L++ PS + + + N W++G + + ++V++P+ N
Sbjct: 98 KL--QAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTN 155
Query: 179 SECDKTYFQ-PITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEP 237
EC K Y IT +CAG +EGGKDAC+GDSGGPL+ K +G W VGI S+G C
Sbjct: 156 EECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARR 215
Query: 238 GYPGVYTRVTKYLDWIEQNM 257
PGVYT+V +Y+DWI +
Sbjct: 216 EQPGVYTKVAEYMDWILEKT 235
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 212 bits (543), Expect = 3e-69
Identities = 82/267 (30%), Positives = 111/267 (41%), Gaps = 44/267 (16%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTE--FWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQ 75
+ GG + PW AAIF R F CGG LI + ++L+AAHC ++ F
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQER----FPPH 56
Query: 76 QFTVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIP 130
TV LG E + VE + + D ++L + S
Sbjct: 57 HLTVILGRTYRVVPGEEEQ--KFEVEKYIVHKEFDDDTYDN--DIALLQLKSD-----SS 107
Query: 131 AMVLF---VEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQRQVDLPVWEN 178
V L P D+ LSG S ++ + ++ +
Sbjct: 108 RCAQESSVVRTVCL----PPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPS 163
Query: 179 SECDKTYFQP--ITDNFICAGLREGG------KDACQGDSGGPLMMKKDGYWMQVGIVSF 230
S C + +TDN +CAG G DACQGDSGGPL+ DG VGI+S+
Sbjct: 164 SRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISW 223
Query: 231 GNKCGEPGYPGVYTRVTKYLDWIEQNM 257
G CG+ PGVYT+VT YLDWI NM
Sbjct: 224 GLGCGQKDVPGVYTKVTNYLDWIRDNM 250
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 212 bits (543), Expect = 3e-69
Identities = 80/265 (30%), Positives = 118/265 (44%), Gaps = 37/265 (13%)
Query: 7 GCGRPDVPKF----RVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAH 62
CG+P V RVVGG + P WPW + L TR +CGG+LI +VLTAAH
Sbjct: 3 DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVS--LR-TRFGMHFCGGTLISPEWVLTAAH 59
Query: 63 CTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEG-LNPCPSDYYYQASVLTIT 121
C + + + V LG + V L P ++L ++
Sbjct: 60 CLEKSP----RPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLEP----TRKDIALLKLS 109
Query: 122 SPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG-------KESTVQRQVDLP 174
SP +T V L PS D +++G + + ++ LP
Sbjct: 110 SPAVITD------KVIPACL----PSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLP 159
Query: 175 VWENSECDKTYFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGN 232
V EN C++ F + +CAG GG D+CQGD+GGPL+ + ++ G+ S+G
Sbjct: 160 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGL 219
Query: 233 KCGEPGYPGVYTRVTKYLDWIEQNM 257
C P PGVY RV++++ WIE M
Sbjct: 220 GCARPNKPGVYVRVSRFVTWIEGVM 244
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 210 bits (537), Expect = 3e-68
Identities = 78/274 (28%), Positives = 114/274 (41%), Gaps = 49/274 (17%)
Query: 8 CGRPDVPKF---RVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCT 64
CG P RVVGG++++P WPW ++ CGG+LI +VLTAAHC
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 65 KDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDY-------- 111
+T + V LG +L EDE V+ E N
Sbjct: 61 SNTLT-------YRVALGKNNLEVEDEAGS-LYVGVDTIFVHEKWNSFLVRNDIALIKLA 112
Query: 112 ---YYQASVLTITSPRYLTGIPA-MVLFVEATSLDFKRPSGLNNAVDFKNVWLSGKESTV 167
++ P + +P FV +G + ++ +G +
Sbjct: 113 ETVELGDTIQVACLPSEGSLLPQDYPCFV----------TG------WGRLYTNGPIAAE 156
Query: 168 QRQVDLPVWENSECDKTYFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQV 225
+Q PV + + C + + + + +CAG +G AC GDSGGPL + DG W
Sbjct: 157 LQQGLQPVVDYATCSQRDWWGTTVKETMVCAG-GDGVISACNGDSGGPLNCQADGQWDVR 215
Query: 226 GIVSFG--NKCGEPGYPGVYTRVTKYLDWIEQNM 257
GIVSFG C P V+TRV+ Y+DWI Q +
Sbjct: 216 GIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 209 bits (535), Expect = 3e-68
Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 44/254 (17%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
VVGG E P++ A++ + C G+LI +VLTAAHC +
Sbjct: 1 VVGGDECNINEHPFLVALYTSASST--IHCAGALINREWVLTAAHCDRR---------NI 49
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQAS-----VLTITSPRYLTGIPAM 132
++LG +E E RV G C + + ++ + P +
Sbjct: 50 RIKLGMHSKNIRNED---EQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYST---- 102
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSG-------KESTVQRQVDLPVWENSECDKTY 185
+ SL PS + + G V ++ + ++ C+ Y
Sbjct: 103 --HIAPVSL----PS--RSRGVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLY 154
Query: 186 -FQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNK-CGEPGYPGVY 243
+ P +CAG+ +GG+D C GDSGGPL+ GIV+ G++ CG+ P VY
Sbjct: 155 PWVPADSRTLCAGILKGGRDTCHGDSGGPLICN----GEMHGIVAGGSEPCGQHLKPAVY 210
Query: 244 TRVTKYLDWIEQNM 257
T+V Y +WI+ +
Sbjct: 211 TKVFDYNNWIQSII 224
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 209 bits (535), Expect = 4e-68
Identities = 73/270 (27%), Positives = 105/270 (38%), Gaps = 62/270 (22%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG SLPG PW+AAI + +C GSL+ T +V++AAHC
Sbjct: 1 IIGGSSSLPGSHPWLAAI-----YIGDSFCAGSLVHTCWVVSAAHCF----SHSPPRDSV 51
Query: 78 TVRLGDIDLRREDEPSM---------PETYRVEEGLN----------PCPSDYYYQASVL 118
+V LG R + + Y V + V
Sbjct: 52 SVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQ 111
Query: 119 TITSPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQR 169
I P F P+G ++G S+ R
Sbjct: 112 PICLP--------------EPGSTF--PAG-------HKCQIAGWGHLDENVSGYSSSLR 148
Query: 170 QVDLPVWENSECDKTYFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGI 227
+ +P+ + +C I+ N +CAG + DACQGDSGGPL +K+G GI
Sbjct: 149 EALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGI 208
Query: 228 VSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
+S+G+ CG PGVYTRV Y+DWI +
Sbjct: 209 ISWGDGCGRLHKPGVYTRVANYVDWINDRI 238
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 209 bits (533), Expect = 7e-68
Identities = 68/260 (26%), Positives = 97/260 (37%), Gaps = 41/260 (15%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
V+GG + PG +PW + + CG SL+ + L+A+HC
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHS-CGASLLSSTSALSASHCVDGVL-----PNNI 54
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAM 132
V G +T V+ E + Y ++L + + L G
Sbjct: 55 RVIAGLWQQSDTSG---TQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGG---- 107
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECDKT 184
++A L P+ NN +SG + ++ +PV ++C
Sbjct: 108 --NIQAAVL----PANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAA 161
Query: 185 YF----QPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSF----GNKCGE 236
I DN IC G AC GDSGGPL DG VG+ S+ G
Sbjct: 162 MVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNC-PDGGTRVVGVTSWVVSSGLGACL 220
Query: 237 PGYPGVYTRVTKYLDWIEQN 256
P YP VYTRV+ YL WI N
Sbjct: 221 PDYPSVYTRVSAYLGWIGDN 240
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 207 bits (528), Expect = 3e-67
Identities = 50/252 (19%), Positives = 92/252 (36%), Gaps = 42/252 (16%)
Query: 20 GGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQFTV 79
GG+++ + PW A+ + CGG+++ +VLTAAHC D + + +
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEE-SLTCGGAILSQWFVLTAAHCVFDQK-----PETIVI 55
Query: 80 RLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAMVL 134
+ +L + ++ ++L ++ P L G L
Sbjct: 56 QYESTNLWEDPG----KSDPYVSHVYLSFYRQ--ETMENDIAILELSRPLKLDG-----L 104
Query: 135 FVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECDKTYF 186
+ L P +V +SG + + L V + EC Y
Sbjct: 105 KSKPAKL----PDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYG 160
Query: 187 Q-PITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTR 245
++ CA + G GD+G P + + VG+ ++ K G P V+T+
Sbjct: 161 PIFLSLQVFCAQ--KVGVSLESGDAGDPTVQQ----DTLVGVAAYFPKRP-EGAPEVFTK 213
Query: 246 VTKYLDWIEQNM 257
V Y+ WI+ +
Sbjct: 214 VGSYVSWIQDII 225
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 206 bits (527), Expect = 4e-67
Identities = 67/260 (25%), Positives = 102/260 (39%), Gaps = 50/260 (19%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG E G WPW A++ G+ CG +LI ++++AAHC + + ++
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGS----HRCGATLINATWLVSAAHCFTTYK----NPARW 52
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTG-----IPAM 132
T G + I +Y I
Sbjct: 53 TASFGVTIK------PSKMKRGLRR----------------IIVHEKYKHPSHDYDISLA 90
Query: 133 VLFVEATSLDFKRPSGL-NNAVDF---KNVWLSG--------KESTVQRQVDLPVWENSE 180
L + L + + +F ++++G RQ + + + +
Sbjct: 91 ELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATT 150
Query: 181 CDKTYFQP--ITDNFICAGLREGGKDACQGDSGGPLM-MKKDGYWMQVGIVSFGNKCGEP 237
C++ IT +CAG EG DACQGDSGGPL+ W GIVS+G++C +P
Sbjct: 151 CNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKP 210
Query: 238 GYPGVYTRVTKYLDWIEQNM 257
PGVYTRVT DWI
Sbjct: 211 NKPGVYTRVTALRDWITSKT 230
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 205 bits (523), Expect = 2e-66
Identities = 51/254 (20%), Positives = 91/254 (35%), Gaps = 40/254 (15%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG++S + PW + + +CGGS++ +V+TAA C T+
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEK----PFCGGSILTANFVITAAQCVDGTK-----PSDI 51
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
++ G + M + + P +V+ P L +
Sbjct: 52 SIHYGSSYRTTKGTSVMAKKIYIV---RYHPLTMQNNYAVIETEMPIKLDDK-----TTK 103
Query: 138 ATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQRQVDLPVWENSECDKTYFQP 188
L PS L + +V +SG + S + + V + C++ Y Q
Sbjct: 104 KIEL----PSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQI 159
Query: 189 -----ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVY 243
I D CAG GD+G P + VG+ S+ + +P V+
Sbjct: 160 EADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQN----GTLVGVASYISSMP-SEFPSVF 214
Query: 244 TRVTKYLDWIEQNM 257
RV Y+ I+ +
Sbjct: 215 LRVGYYVLDIKDII 228
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 205 bits (524), Expect = 2e-66
Identities = 77/269 (28%), Positives = 114/269 (42%), Gaps = 46/269 (17%)
Query: 8 CGRPDVPKF-----RVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAH 62
CG P + R+V G+E++PG WPW + L + +CGGSLI +V+TAAH
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVS--LQ-DKTGFHFCGGSLINENWVVTAAH 57
Query: 63 CTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASV 117
C V G+ D E ++ N + ++
Sbjct: 58 C--------GVTTSDVVVAGEFDQGSSSEKIQ--KLKIAKVFKNSKYNSLTIN--NDITL 105
Query: 118 LTITSPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQ 168
L +++ + V A L PS ++ +G
Sbjct: 106 LKLSTAASFSQ------TVSAVCL----PSASDDFAAGTTCVTTGWGLTRYTNANTPDRL 155
Query: 169 RQVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIV 228
+Q LP+ N+ C K + I D ICAG G +C GDSGGPL+ KK+G W VGIV
Sbjct: 156 QQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLVGIV 213
Query: 229 SFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
S+G+ PGVY RVT ++W++Q +
Sbjct: 214 SWGSSTCSTSTPGVYARVTALVNWVQQTL 242
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 204 bits (521), Expect = 3e-66
Identities = 83/255 (32%), Positives = 112/255 (43%), Gaps = 48/255 (18%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG E++P WP AA+F+ ++CGGSLI ++LTAAHC A
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDM----YFCGGSLISPEWILTAAHCMDG-------AGFV 49
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAM 132
V LG ++R ++ T + E N +V+ + P LT
Sbjct: 50 DVVLGAHNIREDEATQ--VTIQSTDFTVHENYNS--FVISNDIAVIRLPVPVTLTA---- 101
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQRQVDLPVWENSECDK 183
+ L PS + V +G S V RQVD+P+ N++CD
Sbjct: 102 --AIATVGL----PS--TDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDA 153
Query: 184 TYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCG-EPGYPGV 242
Y +TD IC GGK C GDSGGPL + GI SFG G E GYP
Sbjct: 154 VY-GIVTDGNICID-STGGKGTCNGDSGGPLNYN----GLTYGITSFGAAAGCEAGYPDA 207
Query: 243 YTRVTKYLDWIEQNM 257
+TRVT +LDWI+
Sbjct: 208 FTRVTYFLDWIQTQT 222
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 202 bits (516), Expect = 2e-65
Identities = 72/267 (26%), Positives = 106/267 (39%), Gaps = 70/267 (26%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG G PW A + E +CGG+++ Y+LTAAHC ++ F
Sbjct: 1 IVGGYNCKDGEVPWQALLI---NEENEGFCGGTILSEFYILTAAHCLYQAKR-------F 50
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
VR+GD + +E+ + VE I R+
Sbjct: 51 KVRVGDRNTEQEEGGEA--VHEVEV----------------VIKHNRF-----------T 81
Query: 138 ATSLDF-------KRPSGLNNAV--------DF---KNVWLSG---------KESTVQRQ 170
+ DF K P V +SG +
Sbjct: 82 KETYDFDIAVLRLKTPITFRMNVAPASLPTAPPATGTKCLISGWGNTASSGADYPDELQC 141
Query: 171 VDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSF 230
+D PV ++C+ +Y IT N C G EGGKD+CQGDSGGP++ G+VS+
Sbjct: 142 LDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCN----GQLQGVVSW 197
Query: 231 GNKCGEPGYPGVYTRVTKYLDWIEQNM 257
G+ C + PGVYT+V Y+ WI+ +
Sbjct: 198 GDGCAQKNKPGVYTKVYNYVKWIKNTI 224
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 200 bits (511), Expect = 1e-64
Identities = 68/261 (26%), Positives = 109/261 (41%), Gaps = 48/261 (18%)
Query: 17 RVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQ 76
++GG+E P P+MA+I G CGG LI ++VLTAAHC R Q
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGG----HHVCGGVLIDPQWVLTAAHCQ----YRFTKGQS 53
Query: 77 FTVRLGDIDLRREDEPSMPETYRVEEG-LNPC--PSDYYYQASVLTITSPRYLTGIPAMV 133
TV LG L + + T +++ ++ + + L
Sbjct: 54 PTVVLGAHSLSKNEASKQ--TLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLN------ 105
Query: 134 LFVEATSLDFKRPSGLNNAVDFK---NVWLSG---------KESTVQRQVDLPVWENSEC 181
+ + + + ++G + S R+V + V C
Sbjct: 106 --------KHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLC 157
Query: 182 DKTYFQP----ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEP 237
+ + IT + +CAG +G KD+C+GD+GGPL+ K + IVS G++CG
Sbjct: 158 NSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICK----GVFHAIVSGGHECGVA 213
Query: 238 GYPGVYTRVT-KYLDWIEQNM 257
PG+YT +T KY WI+ N+
Sbjct: 214 TKPGIYTLLTKKYQTWIKSNL 234
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 201 bits (513), Expect = 1e-64
Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 45/263 (17%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+ GG ++ G+WPW +I G CGGSL+ ++VL+AAHC H + +
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGV----HVCGGSLVSEQWVLSAAHCF----PSEHHKEAY 52
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQAS-----VLTITSPRYLTGIPAM 132
V+LG L E + +++ + Y + S +L ++ P +
Sbjct: 53 EVKLGAHQLDSYSEDAK--VSTLKDII--PHPSYLQEGSQGDIALLQLSRPITFSR---- 104
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSG----------KESTVQRQVDLPVWENSECD 182
++ SL P+ + + + ++G +Q+++P+ C+
Sbjct: 105 --YIRPISL----PAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCN 158
Query: 183 KTY--------FQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKC 234
Y + ++ +CAG EGGKDACQGDSGGPL +G W GIVS+G+ C
Sbjct: 159 SLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDAC 218
Query: 235 GEPGYPGVYTRVTKYLDWIEQNM 257
G PGVYT + Y WI+ +
Sbjct: 219 GARNRPGVYTLASSYASWIQSKV 241
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 200 bits (511), Expect = 1e-64
Identities = 57/249 (22%), Positives = 96/249 (38%), Gaps = 32/249 (12%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
VV G + WM ++ + CGGSLI +VLTA C + +
Sbjct: 1 VVNGIPT-RTNIGWMVSLRYRN----KHICGGSLIKESWVLTARQCFPSRD-----LKDY 50
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
LG D+ + + V + L P ++ + P L FV
Sbjct: 51 EAWLGIHDVHGRGDEKCKQVLNVSQ-LVYGPE--GSDLVLMKLARPAVLDD------FVS 101
Query: 138 ATSLDFKRPSGLNNAVDFKNVWLSG-------KESTVQRQVDLPVWENSECDKTYFQ--P 188
L P+ + + + + G + R L + N +C + +
Sbjct: 102 TIDL----PNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVT 157
Query: 189 ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTK 248
+ ++ ICAG + G C+GD GGPL+ ++ M +G++ G C P PG++ RV
Sbjct: 158 LNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAY 217
Query: 249 YLDWIEQNM 257
Y WI + +
Sbjct: 218 YAKWIHKII 226
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 199 bits (509), Expect = 2e-64
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 42/251 (16%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG+++ G++P+ ++ L G CG S++ VLTAAHC + +
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSG----SHRCGASILDNNNVLTAAHCVDGLS----NLNRL 52
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V +G L + E V + + +++ +T+P
Sbjct: 53 KVHVGTNYLSESGDVYDVEDAVVNKNYDD--FLLRNDVALVHLTNPIKFN---------- 100
Query: 138 ATSLDFKRPSGL---NNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECDKTYF 186
D +P L + ++ L+G ++++L V +C++ +
Sbjct: 101 ----DLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW 156
Query: 187 QPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRV 246
+ + D+ IC + G+ AC GDSGGPL+ Q+GIVSFG+ C P VYTRV
Sbjct: 157 R-VIDSHICTLT-KRGEGACHGDSGGPLVAN----GAQIGIVSFGSPCALG-EPDVYTRV 209
Query: 247 TKYLDWIEQNM 257
+ ++ WI N+
Sbjct: 210 SSFVSWINANL 220
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 199 bits (509), Expect = 3e-64
Identities = 68/268 (25%), Positives = 102/268 (38%), Gaps = 63/268 (23%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
VVGG PW A++ E CGG L+ +VLTAAHC D Q+
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQK----EHICGGVLLDRNWVLTAAHCYVD---------QY 47
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG L +E+ + + V + + P + + +
Sbjct: 48 EVWLGKNKLFQEEPSA--QHRLVSK----------------SFPHPGFNMSLLMLQTIPP 89
Query: 138 ATSLDF-------KRPSGLNNAV-----------DFKNVWLSG---------KESTVQRQ 170
+P+ + + V SG ++ +
Sbjct: 90 GADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPTRWQKPDDLQC 149
Query: 171 VDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSF 230
V + + N C K Y Q +TD +CAG GGKD C+ DSGGPL+ + G S+
Sbjct: 150 VFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICD----GILQGTTSY 205
Query: 231 GNK-CGEPGYPGVYTRVTKYLDWIEQNM 257
G CG+PG P +YT + K+ WI+ M
Sbjct: 206 GPVPCGKPGVPAIYTNLIKFNSWIKDTM 233
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 199 bits (508), Expect = 4e-64
Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 37/257 (14%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
VVGG E+ WP ++ CGG+LI +V+TAAHC F
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELT-------F 53
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAM 132
V +G+ +L + + + V+ N Y ++L + L
Sbjct: 54 RVVVGEHNLNQNNGTE--QYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNS---- 107
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECDKT 184
+V+ L P + +++G + + +Q LP + + C +
Sbjct: 108 --YVQLGVL----PRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSS 161
Query: 185 YFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNK--CGEPGYP 240
+ + ++ +CAG +G + CQGDSGGPL +G + G+ SF ++ C P
Sbjct: 162 SYWGSTVKNSMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKP 220
Query: 241 GVYTRVTKYLDWIEQNM 257
V+TRV+ Y+ WI +
Sbjct: 221 TVFTRVSAYISWINNVI 237
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 198 bits (506), Expect = 9e-64
Identities = 65/269 (24%), Positives = 102/269 (37%), Gaps = 63/269 (23%)
Query: 17 RVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQ 76
V Q PW A++ ++ CGG L+ +VLTAAHC D +
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFN----KYQCGGVLLDRNWVLTAAHCYND---------K 49
Query: 77 FTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFV 136
+ V LG + ++ + V + I P + +
Sbjct: 50 YQVWLGKNNFLEDEPSD--QHRLVSK----------------AIPHPDFNMSLLNEHTPQ 91
Query: 137 EATSLDF-------KRPSGLNNAV--------DFK---NVWLSG---------KESTVQR 169
+P+ + + V + K SG K +
Sbjct: 92 PEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQ 151
Query: 170 QVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVS 229
V+L + N +CDK + +TD +CAG +GG C+ DSGGPL+ + GI S
Sbjct: 152 CVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICD----GILQGITS 207
Query: 230 FGNK-CGEPGYPGVYTRVTKYLDWIEQNM 257
+G + CGEP P VYT++ K+ WI + M
Sbjct: 208 WGPEPCGEPTEPSVYTKLIKFSSWIRETM 236
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 197 bits (504), Expect = 1e-63
Identities = 72/260 (27%), Positives = 108/260 (41%), Gaps = 60/260 (23%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG P+ ++ +CGGSLI +++V++AAHC K
Sbjct: 1 IVGGYTCGANTVPYQVSLN-----SGYHFCGGSLINSQWVVSAAHCYKS---------GI 46
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQ-----------ASVLTITSPRYL 126
VRLG+ ++ + + + PS Y S ++ S
Sbjct: 47 QVRLGEDNINVVEGNE--QFISASK-SIVHPS-YNSNTLNNDIMLIKLKSAASLNS---- 98
Query: 127 TGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQRQVDLPVWE 177
V + SL P+ + A +SG V + + P+
Sbjct: 99 --------RVASISL----PT--SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS 144
Query: 178 NSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEP 237
+S C Y IT N CAG EGGKD+CQGDSGGP++ GIVS+G+ C +
Sbjct: 145 DSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCS----GKLQGIVSWGSGCAQK 200
Query: 238 GYPGVYTRVTKYLDWIEQNM 257
PGVYT+V Y+ WI+Q +
Sbjct: 201 NKPGVYTKVCNYVSWIKQTI 220
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 199 bits (507), Expect = 2e-63
Identities = 66/268 (24%), Positives = 110/268 (41%), Gaps = 48/268 (17%)
Query: 18 VVGGQESLPGRWPWMAAI--FLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQ 75
++GGQ++ G WPWM ++ F + R CGGSL+ ++++LTAAHC + +
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKK----KVT 56
Query: 76 QFTVRLGDIDLRREDEPSMP---ETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIP-- 130
+ + G ++ + + VE+ I +Y
Sbjct: 57 DWRLIFGAKEVEWGTNKPVKPPLQERYVEK----------------IIIHEKYSASSEAN 100
Query: 131 --AMVLFVEATSL-DFKRP-----SGLNNAVDFKNVWLSG---------KESTVQRQVDL 173
A++ + F P + W++G + S + ++ +
Sbjct: 101 DIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARV 160
Query: 174 PVWENSECDKTYFQP--ITDNFICAGLREGGKDACQGDSGGPLM--MKKDGYWMQVGIVS 229
+ + C+ T + I +CAG EG D CQGDSGGPLM + ++ VGI S
Sbjct: 161 DLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITS 220
Query: 230 FGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
+G C PGVYT YL+WI +
Sbjct: 221 WGVGCARAKRPGVYTSTWSYLNWIASKI 248
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 197 bits (502), Expect = 3e-63
Identities = 61/247 (24%), Positives = 94/247 (38%), Gaps = 29/247 (11%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
VVGG PG PW + L R+ + +CGGSL+ +++LTA C +
Sbjct: 1 VVGGH---PGNSPWTVS--LR-NRQGQHFCGGSLVKEQWILTARQCFSSCHMPL---TGY 51
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG + + + V + + PS Q +L + L V
Sbjct: 52 EVWLGTLFQNPQHGEPSLQRVPVAK-MVCGPS--GSQLVLLKLERSVTLNQ------RVA 102
Query: 138 ATSLDFKRPSGLNNAVDFKNVWLSG-------KESTVQRQVDLPVWENSECDKTYFQPIT 190
L P ++G TV L V N EC+ + +
Sbjct: 103 LICL----PPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRGRVR 158
Query: 191 DNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYL 250
++ +C AC+GD GGPL W+ GI+ C +P V+TRV+ ++
Sbjct: 159 ESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFV 218
Query: 251 DWIEQNM 257
DWI + M
Sbjct: 219 DWIHKVM 225
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 197 bits (502), Expect = 3e-63
Identities = 72/269 (26%), Positives = 103/269 (38%), Gaps = 64/269 (23%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG E PW AA++ + F CGG L+ ++VLTAAHC D +
Sbjct: 1 IVGGWECEQHSQPWQAALY----HFSTFQCGGILVHRQWVLTAAHCISD---------NY 47
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
+ LG +L ++ + + V E + P + +
Sbjct: 48 QLWLGRHNLFDDENTA--QFVHVSE----------------SFPHPGFNMSLLENHTRQA 89
Query: 138 ATSLDF-------KRP-SGLNNAV--------DFK---NVWLSG---------KESTVQR 169
P + +AV + + SG +
Sbjct: 90 DEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQ 149
Query: 170 QVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVS 229
VDL + N EC K + Q +TD +C G EGGKD C GDSGGPLM + G+ S
Sbjct: 150 CVDLKILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPLMCD----GVLQGVTS 205
Query: 230 FGNK-CGEPGYPGVYTRVTKYLDWIEQNM 257
+G CG P P V RV Y+ WIE +
Sbjct: 206 WGYVPCGTPNKPSVAVRVLSYVKWIEDTI 234
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 196 bits (501), Expect = 4e-63
Identities = 65/257 (25%), Positives = 103/257 (40%), Gaps = 38/257 (14%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
VVGG+ + P WPW ++ CGGSLI +V+TAAHC R +
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSART-------W 53
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAM 132
V LG+ +L + + V G N Y ++L + + L
Sbjct: 54 RVVLGEHNLNTNEGKE--QIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNS---- 107
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECDKT 184
V+ +L P + +++G S +Q LP +++ C +
Sbjct: 108 --AVQLAAL----PPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSS 161
Query: 185 YFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSF--GNKCGEPGYP 240
+ + +CAG G C GDSGGPL + +G + G+ SF + C P
Sbjct: 162 GWWGSTVKTTMVCAG--GGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKP 219
Query: 241 GVYTRVTKYLDWIEQNM 257
V+TRV+ Y+ W+ M
Sbjct: 220 TVFTRVSAYISWMNGIM 236
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 195 bits (498), Expect = 8e-63
Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 59/259 (22%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG E P ++ +CGGSL+ +V++AAHC K +
Sbjct: 1 IVGGYECKAYSQPHQVSL-----NSGYHFCGGSLVNENWVVSAAHCYKS---------RV 46
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQ-----------ASVLTITSPRYL 126
VRLG+ +++ + + + +Y + T+ +
Sbjct: 47 EVRLGEHNIKVTEGSE--QFISSSRVI--RHPNYSSYNIDNDIMLIKLSKPATLNT---- 98
Query: 127 TGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWEN 178
+V+ +L P+ + A +SG +S + +++P+
Sbjct: 99 --------YVQPVAL----PT--SCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSY 144
Query: 179 SECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPG 238
S+C+ +Y IT+ CAG EGGKD+CQGDSGGP++ G+VS+G C EPG
Sbjct: 145 SDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCN----GELQGVVSWGYGCAEPG 200
Query: 239 YPGVYTRVTKYLDWIEQNM 257
PGVY +V + DW+ M
Sbjct: 201 NPGVYAKVCIFNDWLTSTM 219
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 194 bits (496), Expect = 2e-62
Identities = 62/261 (23%), Positives = 102/261 (39%), Gaps = 59/261 (22%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++ G + PW AA+ L + +CG L+ +++LTAAHC K F
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQ---LYCGAVLVHPQWLLTAAHCRKKV---------F 48
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQ-----------ASVLTITSPRYL 126
VRLG L E + ++ + + Y + + T
Sbjct: 49 RVRLGHYSLSPVYESG-QQMFQGVKSI--PHPGYSHPGHSNDLMLIKLNRRIRPTK---- 101
Query: 127 TGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQRQVDLPVWE 177
V ++ S + +SG V + +++ V
Sbjct: 102 --------DVRPINV----SS--HCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLS 147
Query: 178 NSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNK-CGE 236
C+ Y + I D CAG + G+D+CQGDSGGP++ G+VS+G+ C
Sbjct: 148 QKRCEDAYPRQIDDTMFCAGD-KAGRDSCQGDSGGPVVCN----GSLQGLVSWGDYPCAR 202
Query: 237 PGYPGVYTRVTKYLDWIEQNM 257
P PGVYT + K+ WI++ +
Sbjct: 203 PNRPGVYTNLCKFTKWIQETI 223
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 195 bits (498), Expect = 2e-62
Identities = 72/258 (27%), Positives = 112/258 (43%), Gaps = 38/258 (14%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
VVGG+++ P WPW ++ + + CGG+L+ +VLTAAHC +R +
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRT-------Y 53
Query: 78 TVRLGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAM 132
V LG L + S+ +V + N ++L + SP LT
Sbjct: 54 RVVLGRHSLSTNEPGSL--AVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTD---- 107
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECDKT 184
++ L P+ + +++G + +Q L V + + C K
Sbjct: 108 --KIQLGCL----PAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKP 161
Query: 185 YFQP--ITDNFICAGLREGGKDACQGDSGGPLM-MKKDGYWMQVGIVSFGNK--CGEPGY 239
+ + N ICAG +G +C GDSGGPL +G W GIVSFG+ C
Sbjct: 162 GWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHK 220
Query: 240 PGVYTRVTKYLDWIEQNM 257
P V+TRV+ Y+DWI +
Sbjct: 221 PSVFTRVSNYIDWINSVI 238
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 194 bits (496), Expect = 2e-62
Identities = 65/268 (24%), Positives = 99/268 (36%), Gaps = 63/268 (23%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG E PW + G CGG L+ ++VLTAAHC ++ +
Sbjct: 1 IVGGWECEKHSQPWQVLVASRG----RAVCGGVLVHPQWVLTAAHCIRN---------KS 47
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
+ LG L ++ + ++V + P Y +
Sbjct: 48 VILLGRHSLFHPEDTG--QVFQVSH----------------SFPHPLYDMSLLKNRFLRP 89
Query: 138 ATSLDF-------KRPSGLNNAV--------DFK---NVWLSG---------KESTVQRQ 170
P+ L +AV + + SG +
Sbjct: 90 GDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQC 149
Query: 171 VDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSF 230
VDL V N C + + Q +T +CAG GGK C GDSGGPL+ + GI S+
Sbjct: 150 VDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPLVCN----GVLQGITSW 205
Query: 231 GNK-CGEPGYPGVYTRVTKYLDWIEQNM 257
G++ C P P +YT+V Y WI+ +
Sbjct: 206 GSEPCALPERPSLYTKVVHYRKWIKDTI 233
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 193 bits (494), Expect = 3e-62
Identities = 67/261 (25%), Positives = 101/261 (38%), Gaps = 62/261 (23%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++ G G PW A+ + CGG L+ R+VLTAAHC + ++
Sbjct: 1 IIDGAPCARGSHPWQVALLSGN----QLHCGGVLVNERWVLTAAHCKMN---------EY 47
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQ-----------ASVLTITSPRYL 126
TV LG L + + + Y Q S ++S
Sbjct: 48 TVHLGSDTLGDRRA----QRIKASKSF--RHPGYSTQTHVNDLMLVKLNSQARLSS---- 97
Query: 127 TGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQRQVDLPVWE 177
V+ L PS +SG + VD+ +
Sbjct: 98 --------MVKKVRL----PS--RCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLIS 143
Query: 178 NSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNK-CGE 236
+C K Y + ++ +CAG+ + K+AC GDSGGPL+ + G+VS+G CG+
Sbjct: 144 PQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLVCR----GTLQGLVSWGTFPCGQ 199
Query: 237 PGYPGVYTRVTKYLDWIEQNM 257
P PGVYT+V K+ WI M
Sbjct: 200 PNDPGVYTQVCKFTKWINDTM 220
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 197 bits (502), Expect = 5e-62
Identities = 69/295 (23%), Positives = 110/295 (37%), Gaps = 75/295 (25%)
Query: 3 SCLHGCGRPDVPKF---RVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLT 59
C+ CG P P R++GG ++ +PW F W GG+LI +VLT
Sbjct: 65 KCVPVCGVPREPFEEKQRIIGGSDADIKNFPWQV--FFD-----NPWAGGALINEYWVLT 117
Query: 60 AAHCTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEE----------GLNPCPS 109
AAH + R+ T+ +G ++ + E + +
Sbjct: 118 AAHVVEGNRE-------PTMYVGSTSVQTSRLAKS-KMLTPEHVFIHPGWKLLAVPEGRT 169
Query: 110 DYYYQASVLTITSPRYLTGIPAMVLFVE--------ATSLDFKRPSGLNNAVDFKNVWLS 161
++ +++ + P V TS D+ G +S
Sbjct: 170 NFDNDIALVRLKDP---------VKMGPTVSPICLPGTSSDYNLMDG-------DLGLIS 213
Query: 162 G-------KESTVQRQVDLPVWENSECDKTYFQP---------ITDNFICAGLREGGKDA 205
G + + LPV +C + + T N ICAG E G D+
Sbjct: 214 GWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGG-EKGMDS 272
Query: 206 CQGDSGGPLMMKK---DGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
C+GDSGG ++ + G+VS+G +CG G+YTRV Y+DWI + M
Sbjct: 273 CKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG---TYGLYTRVKNYVDWIMKTM 324
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 192 bits (491), Expect = 1e-61
Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 71/266 (26%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++ G++ P PW AA+ + E +C G L+ ++VL+AAHC +++ +
Sbjct: 1 IINGEDCSPHSQPWQAALVMEN----ELFCSGVLVHPQWVLSAAHCFQNS---------Y 47
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
T+ LG L + EP + ++ P Y
Sbjct: 48 TIGLGLHSLEADQEPGS-QMVEASL----------------SVRHPEY-----------N 79
Query: 138 ATSLDF-------KRPSGLNNAV--------DFKN---VWLSG-------KESTVQRQVD 172
L ++ + +SG + TV + V+
Sbjct: 80 RPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLVSGWGLLANGRMPTVLQCVN 139
Query: 173 LPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGN 232
+ V C K Y + CAG + KD+C GDSGGPL+ G+VSFG
Sbjct: 140 VSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPLICN----GYLQGLVSFGK 195
Query: 233 -KCGEPGYPGVYTRVTKYLDWIEQNM 257
CG+ G PGVYT + K+ +WIE+ +
Sbjct: 196 APCGQVGVPGVYTNLCKFTEWIEKTV 221
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 192 bits (490), Expect = 2e-61
Identities = 67/268 (25%), Positives = 104/268 (38%), Gaps = 65/268 (24%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG + PW A+ E+ CGG LI +V+TAAHC + +
Sbjct: 1 IVGGYKCEKNSQPWQVAVI------NEYLCGGVLIDPSWVITAAHCYSN---------NY 45
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG +L +++ + + V + + P Y+ I
Sbjct: 46 QVLLGRNNLFKDEPFA--QRRLVRQ----------------SFRHPDYIPLIVTNDTEQP 87
Query: 138 ATSLDF-------KRPSGLNNAV--------DFK---NVWLSG---------KESTVQRQ 170
P+ + V + K SG S +
Sbjct: 88 VHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQC 147
Query: 171 VDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSF 230
V++ + N +C +TY +TD +CAG EGGKD C GDSGGPL+ + GI S
Sbjct: 148 VNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICD----GVLQGITSG 203
Query: 231 G-NKCGEPGYPGVYTRVTKYLDWIEQNM 257
G C +P P +Y ++ K+ WI++ M
Sbjct: 204 GATPCAKPKTPAIYAKLIKFTSWIKKVM 231
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 191 bits (488), Expect = 5e-61
Identities = 71/264 (26%), Positives = 105/264 (39%), Gaps = 60/264 (22%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG E ++ A L+ +R +CGG+LI +VLTAAHC + F
Sbjct: 1 IIGGDECNINEHRFLVA--LYTSRSRTLFCGGTLINQEWVLTAAHCDRK---------NF 49
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQ-----------ASVLTITSPRYL 126
++LG + +E E RV + C S Y S + +
Sbjct: 50 RIKLGMHSKKVPNE---DEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSK---- 102
Query: 127 TGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG----KESTVQ-----RQVDLPVWE 177
+ SL PS + + G + V++ + E
Sbjct: 103 --------HIAPFSL----PS--SPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLE 148
Query: 178 NSECDKTY---FQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGN-K 233
C Y P T +CAG+ EGGKD C+GDSGGPL+ GI S+G+
Sbjct: 149 YEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICN----GQFQGIASWGDDP 204
Query: 234 CGEPGYPGVYTRVTKYLDWIEQNM 257
C +P P YT+V +LDWIE +
Sbjct: 205 CAQPHKPAAYTKVFDHLDWIENII 228
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 190 bits (485), Expect = 7e-61
Identities = 72/266 (27%), Positives = 102/266 (38%), Gaps = 72/266 (27%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+V G P+ AA++ G CGG LI +VLTAAHC K
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSG----HLLCGGVLIHPLWVLTAAHCKKP---------NL 47
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG +LR+ + E V + P Y +
Sbjct: 48 QVFLGKHNLRQRESSQ--EQSSVVR----------------AVIHPDY-----------D 78
Query: 138 ATSLDF-------KRPSGLNNAV--------DFK---NVWLSG-------KESTVQRQVD 172
A S D RP+ L+ + + + G +
Sbjct: 79 AASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGDFPDTIQCAY 138
Query: 173 LPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGN 232
+ + EC+ Y IT N +CAG + GKD+CQGDSGGPL+ G+VS+GN
Sbjct: 139 IHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCG----DHLRGLVSWGN 194
Query: 233 K-CGEPGYPGVYTRVTKYLDWIEQNM 257
CG PGVYT V +Y +WI++ +
Sbjct: 195 IPCGSKEKPGVYTNVCRYTNWIQKTI 220
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 190 bits (486), Expect = 8e-61
Identities = 61/268 (22%), Positives = 101/268 (37%), Gaps = 75/268 (27%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
V+GG E ++A ++ +G CGG+LI +VLTA HC +
Sbjct: 1 VIGGDECNINEHRFLALVYANG-----SLCGGTLINQEWVLTARHCDRG---------NM 46
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
+ LG +L+ ++ ++ + E+
Sbjct: 47 RIYLGMHNLKVLNKDAL-RRFPKEK----------------YFCLNTR-----------N 78
Query: 138 ATSLDF-------KRPSGLNNAV--------DFK---NVWLSG---------KESTVQRQ 170
T D RP + + + G V
Sbjct: 79 DTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSPNATLPDVPHC 138
Query: 171 VDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSF 230
++ + + + C Y + + +CAG+ EGGKD C+GDSGGPL+ +G + GI+S
Sbjct: 139 ANINILDYAVCQAAY-KGLAATTLCAGILEGGKDTCKGDSGGPLI--CNGQF--QGILSV 193
Query: 231 GNK-CGEPGYPGVYTRVTKYLDWIEQNM 257
G C +P PG+YT+V Y DWI+ +
Sbjct: 194 GGNPCAQPRKPGIYTKVFDYTDWIQSII 221
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 190 bits (486), Expect = 8e-61
Identities = 58/268 (21%), Positives = 111/268 (41%), Gaps = 63/268 (23%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG E PW A++ G F CGG L+ ++VLTAAHC D +
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQG----HFQCGGVLVHPQWVLTAAHCMSD---------DY 47
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
+ LG +L ++++ + + ++V + + P++ +
Sbjct: 48 QIWLGRHNLSKDEDTA--QFHQVSD----------------SFLDPQFDLSLLKKKYLRP 89
Query: 138 ATSLDF-------KRPSGLNNAV--------DFK---NVWLSG---------KESTVQRQ 170
+ +P+ + +AV + K + SG + S +
Sbjct: 90 YDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQC 149
Query: 171 VDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSF 230
V+L + N +C + Y + +T+ +CA R+ C GDSGG L+ + GI S+
Sbjct: 150 VELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALICD----GVFQGITSW 205
Query: 231 G-NKCGEPGYPGVYTRVTKYLDWIEQNM 257
G ++C + V+T+V + WI++ +
Sbjct: 206 GYSECADFNDNFVFTKVMPHKKWIKETI 233
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 190 bits (485), Expect = 1e-60
Identities = 64/271 (23%), Positives = 107/271 (39%), Gaps = 75/271 (27%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG+E+ P+MA++ L+G CGG L+ ++VL+AAHC +D +
Sbjct: 1 ILGGREAEAHARPYMASVQLNG----AHLCGGVLVAEQWVLSAAHCLEDAADG-----KV 51
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG L + + Y V + P +
Sbjct: 52 QVLLGAHSLSQPEPSKR--LYDVLR----------------AVPHPDS-----------Q 82
Query: 138 ATSLDF-------KRPSGLNNAV----------DFK-----------NVWLSGKESTVQR 169
++D + L AV D V +G+ +
Sbjct: 83 PDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQ 142
Query: 170 QVDLPVWENSECDKTYFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGI 227
V LPV + + C++ IT+ +CA +D+C+GD+GGPL+ + G+
Sbjct: 143 HVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDAGGPLVCG----GVLEGV 196
Query: 228 VSFGNK-CGEPGYPGVYTRVTKYLDWIEQNM 257
V+ G++ CG PG+YTRV Y WI+ +
Sbjct: 197 VTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 189 bits (483), Expect = 3e-60
Identities = 57/256 (22%), Positives = 100/256 (39%), Gaps = 44/256 (17%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG+E +P P+MA++ +G+ CGG L+ ++VLTAAHC Q
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGS----HLCGGVLVHPKWVLTAAHCLAQRMA------QL 50
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYY------------YQASVLTITSPRY 125
+ LG L + P P+ ++ + P
Sbjct: 51 RLVLGLHTLDSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSK 110
Query: 126 LTGIPA-MVLFVEATSLDFKRPSGLNNAVDFKNVWLSGKESTVQRQVDLPVWENSECDKT 184
+ A + +G + G+ S V R++DL V + C+ +
Sbjct: 111 RQVVAAGTRCSM----------AG------WGLTHQGGRLSRVLRELDLQVLDTRMCNNS 154
Query: 185 YFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNK-CGEPGYPG 241
F ++ + +C + C+GDSGGPL+ + G++SF ++ C + P
Sbjct: 155 RFWNGSLSPSMVCLAADSKDQAPCKGDSGGPLVCG--KGRVLAGVLSFSSRVCTDIFKPP 212
Query: 242 VYTRVTKYLDWIEQNM 257
V T V Y+ WI +
Sbjct: 213 VATAVAPYVSWIRKVT 228
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 188 bits (480), Expect = 4e-60
Identities = 75/268 (27%), Positives = 114/268 (42%), Gaps = 72/268 (26%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++ G+E +P PW AA+F CGG L+G R+VLTAAHC K ++
Sbjct: 1 ILEGRECIPHSQPWQAALFQGE----RLICGGVLVGDRWVLTAAHCKKQ---------KY 47
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
+VRLGD L+ D+P + +V + +I P Y P
Sbjct: 48 SVRLGDHSLQSRDQPE--QEIQVAQ----------------SIQHPCYNNSNP------- 82
Query: 138 ATSLDF-------KRPSGLNNAV--------DFK---NVWLSG---------KESTVQRQ 170
+ + L + V K +SG
Sbjct: 83 -EDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLNC 141
Query: 171 VDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSF 230
++ ++ ++C++ Y IT+ +CAG G D CQGDSGGPL+ M GI S+
Sbjct: 142 AEVKIYSQNKCERAYPGKITEGMVCAGS-SNGADTCQGDSGGPLVCD----GMLQGITSW 196
Query: 231 GN-KCGEPGYPGVYTRVTKYLDWIEQNM 257
G+ CG+P PGVYT++ +Y WI++ M
Sbjct: 197 GSDPCGKPEKPGVYTKICRYTTWIKKTM 224
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 188 bits (480), Expect = 6e-60
Identities = 68/262 (25%), Positives = 98/262 (37%), Gaps = 60/262 (22%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
V+GG E + A F F+C G+LI +VLTAAHC F
Sbjct: 1 VIGGDECNINEHRSLVAFFNST----GFFCSGTLINEEWVLTAAHCDNT---------NF 47
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQ-----------ASVLTITSPRYL 126
++LG + +E E R + CP+ + S ++ +
Sbjct: 48 QMKLGVHSKKVLNED---EQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSE---- 100
Query: 127 TGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG---------KESTVQRQVDLPVWE 177
+ SL PS + + G V + + +
Sbjct: 101 --------HIVPLSL----PS--SPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLD 146
Query: 178 NSECDKTY-FQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNK-CG 235
++ C Y +CAG+ EGGKD C GDSGGPL+ GIVSFG CG
Sbjct: 147 DAVCQAGYPELLTEYRTLCAGILEGGKDTCGGDSGGPLICN----GQFQGIVSFGAHPCG 202
Query: 236 EPGYPGVYTRVTKYLDWIEQNM 257
+ PGVYT+V Y WI+ +
Sbjct: 203 QGLKPGVYTKVFDYNHWIQSII 224
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 188 bits (479), Expect = 9e-60
Identities = 57/255 (22%), Positives = 96/255 (37%), Gaps = 37/255 (14%)
Query: 21 GQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQFTVR 80
G++++P W W ++ CGGSLI +V+TA HC +R + V
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRT-------YQVV 54
Query: 81 LGDIDLRREDEPSMPETYRVE-----EGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLF 135
LG+ D + N +++ ++ L
Sbjct: 55 LGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGD------K 108
Query: 136 VEATSLDFKRPSGLNNAVDFKNVWLSG--------KESTVQRQVDLPVWENSECDKTYFQ 187
V+ +L P + + ++SG +Q LP + C + +
Sbjct: 109 VQLANL----PPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWW 164
Query: 188 P--ITDNFICAGLREGGKDACQGDSGGPLM-MKKDGYWMQVGIVSFGNK--CGEPGYPGV 242
+ +CAG + C GDSGGPL DG W G+ SF + C P V
Sbjct: 165 GITVKKTMVCAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTV 222
Query: 243 YTRVTKYLDWIEQNM 257
+TRV+ ++DWI++ +
Sbjct: 223 FTRVSAFIDWIDETI 237
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 187 bits (477), Expect = 1e-59
Identities = 62/268 (23%), Positives = 96/268 (35%), Gaps = 73/268 (27%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG E+ P P+MA + T CGG L+ +VLTAAHC +
Sbjct: 1 IIGGHEAKPHSRPYMAFLL-FKTSGKSHICGGFLVREDFVLTAAHCLGSS---------I 50
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG ++ + + V I P Y
Sbjct: 51 NVTLGAHNIMERERTQ--QVIPVRR----------------PIPHPDY-----------N 81
Query: 138 ATSLDF-------KRPSGLNNAV----------DFKN-----------VWLSGKESTVQR 169
+L R + + + V + K + ++ + +
Sbjct: 82 DETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQ 141
Query: 170 QVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVS 229
+VDL V +C + I ICAG K++ GDSGGPL+ + GIVS
Sbjct: 142 EVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPLVCN----GVAQGIVS 197
Query: 230 FGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
+G + P VYTR++ +L WI M
Sbjct: 198 YG--RNDGTTPDVYTRISSFLSWIHSTM 223
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 194 bits (495), Expect = 2e-59
Identities = 46/296 (15%), Positives = 91/296 (30%), Gaps = 63/296 (21%)
Query: 8 CGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDT 67
CG + + + PW A I + + C G+++ +VLTAAHC
Sbjct: 211 CGM------VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVD 264
Query: 68 RQRPFHAQQFTVRLGDIDLRRE-DEPSMPETYRVEEGLNPCPSDYY-------------- 112
+ V +G E + Y + ++Y
Sbjct: 265 DK----EHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 320
Query: 113 YQASVLTI----TSPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSGKESTVQ 168
Y ++ I T + + + +E
Sbjct: 321 YGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALF-------VSEEEKKL 373
Query: 169 RQVDLPVWENSECD---------------KTYFQPITDNFICAGLREG--GKDACQGDSG 211
+ ++ + + K + +T F+C G + C+GDSG
Sbjct: 374 TRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSG 433
Query: 212 GPLMMKKDGYWMQVGIVSFGNK--CGEPG--------YPGVYTRVTKYLDWIEQNM 257
GPL++ K ++QVG++S+G C + + + L W+++ +
Sbjct: 434 GPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKL 489
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 195 bits (497), Expect = 5e-59
Identities = 65/271 (23%), Positives = 104/271 (38%), Gaps = 45/271 (16%)
Query: 8 CGRPDV---PKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCT 64
CG + + R+VGG+ + G PW AI CGG IG ++LTAAHC
Sbjct: 309 CGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDAS----GITCGGIYIGGCWILTAAHCL 364
Query: 65 KDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEE-GLNPCPSDYYYQAS-----VL 118
+ ++ ++ + +D D + V+ + +Y ++
Sbjct: 365 RASK-----THRYQIWTTVVDWIHPDLKRI-VIEYVDRIIFHE---NYNAGTYQNDIALI 415
Query: 119 TITSPRYLTGIPAMVLFVEATSLDFKR---PSGLNNAVDFKNVWLSG-------KESTVQ 168
+ + P +SG +
Sbjct: 416 EMKKD---------GNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNERVFSL 466
Query: 169 RQVDLPVWENSECDKTYFQP-ITDNFICAGLREGGKDACQGDSGGPLM-MKKDGYWMQVG 226
+ ++ + N C K Y CAG +G DAC+GDSGGPL+ M + G
Sbjct: 467 QWGEVKLISN--CSKFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWG 524
Query: 227 IVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
+VS+G CG+P +PGVYT+V Y DWI ++
Sbjct: 525 VVSWGENCGKPEFPGVYTKVANYFDWISYHV 555
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 185 bits (472), Expect = 8e-59
Identities = 61/268 (22%), Positives = 97/268 (36%), Gaps = 73/268 (27%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG ES+P P+MA + + + CGG LI ++VLTAAHC
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGRE---------I 51
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
TV LG D+R+ + + +VE+ I Y
Sbjct: 52 TVILGAHDVRKRESTQ--QKIKVEK----------------QIIHESY-----------N 82
Query: 138 ATSLDF-------KRPSGLNNAV----------DFK-----------NVWLSGKESTVQR 169
+ ++ L AV + S R
Sbjct: 83 SVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLR 142
Query: 170 QVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVS 229
+V+L + + C + +C G + A GDSGGPL+ + GIVS
Sbjct: 143 EVELRIMDEKACVDYRYY-EYKFQVCVGSPTTLRAAFMGDSGGPLLCA----GVAHGIVS 197
Query: 230 FGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
+G+ +P P ++TRV+ Y+ WI +
Sbjct: 198 YGHPDAKP--PAIFTRVSTYVPWINAVI 223
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 184 bits (470), Expect = 2e-58
Identities = 68/275 (24%), Positives = 105/275 (38%), Gaps = 80/275 (29%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG E P P+M + L + C G+LI +VLTAAHC + R
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDR----KTICAGALIAKDWVLTAAHCNLNKR--------S 48
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG + RE+ + V++ P Y +
Sbjct: 49 QVILGAHSITREEPTK--QIMLVKK----------------EFPYPCY-----------D 79
Query: 138 ATSLDF-------KRPSGLNNAV----------DFK-----------NVWLSGKESTVQR 169
+ + + +N V D K S S R
Sbjct: 80 PATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLR 139
Query: 170 QVDLPVWENSECDKTYFQP----ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQV 225
+V++ + + C+ I N +CAG GG+D+C GDSG PL+ + +
Sbjct: 140 EVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE----GVFR 195
Query: 226 GIVSFG--NKCGEPGYPGVYTRVT-KYLDWIEQNM 257
G+ SFG NKCG+P PGVY ++ K+L+WI +
Sbjct: 196 GVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 186 bits (473), Expect = 2e-58
Identities = 42/285 (14%), Positives = 70/285 (24%), Gaps = 75/285 (26%)
Query: 3 SCLHGCGRPDVPK--FRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTA 60
C D + PW + + +CGG +I +VLT
Sbjct: 36 EDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLT---NSEGKDFCGGVIIRENFVLTT 92
Query: 61 AHCTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTI 120
A C+ R TV+ ++ P ++
Sbjct: 93 AKCSLLHRN-------ITVKTYFNRTSQD-----PLMIKITH----------------VH 124
Query: 121 TSPRYLTGIPAMVLFVEATS------LDFKRPSGLNNAV----------------DFKNV 158
RY L+ + P A
Sbjct: 125 VHMRY----------DADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRG 174
Query: 159 WLSG------KESTVQRQVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGG 212
LSG + + E EC + +T C A G
Sbjct: 175 LLSGWARNGTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCER---SSVAAMHWMDGS 231
Query: 213 PLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
+ + G W G++ G + + T+V++Y W +Q M
Sbjct: 232 VVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIM 275
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 183 bits (468), Expect = 3e-58
Identities = 62/271 (22%), Positives = 101/271 (37%), Gaps = 78/271 (28%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG E+ P P+MA + + +++ CGG LI +VLTAAHC
Sbjct: 1 IIGGHEAKPHSRPYMAYLMI-WDQKSLKRCGGFLIRDDFVLTAAHCWGS---------SI 50
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG +++ ++ + V+ I P Y
Sbjct: 51 NVTLGAHNIKEQEPTQ--QFIPVKR----------------PIPHPAY------------ 80
Query: 138 ATSLDF---------KRPSGLNNAV----------DFKN-----------VWLSGKESTV 167
+F +R + AV K GK S
Sbjct: 81 -NPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHT 139
Query: 168 QRQVDLPVWENSECDKTYF-QPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVG 226
++V + V E+ +C+ + +C G E K + +GDSGGPL+ + G
Sbjct: 140 LQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPLVCN----KVAQG 195
Query: 227 IVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
IVS+G G P P T+V+ ++ WI++ M
Sbjct: 196 IVSYGRNNGMP--PRACTKVSSFVHWIKKTM 224
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 183 bits (467), Expect = 5e-58
Identities = 60/268 (22%), Positives = 96/268 (35%), Gaps = 73/268 (27%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG E P P+MA + + + +CGG LI +VLTAAHC +
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRS---------I 51
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
TV LG ++ E++ + V + P+Y
Sbjct: 52 TVTLGAHNITEEEDTW--QKLEVIK----------------QFRHPKY-----------N 82
Query: 138 ATSLDF-------KRPSGLNNAV----------DFK-----------NVWLSGKESTVQR 169
++L K + L AV + S +
Sbjct: 83 TSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQ 142
Query: 170 QVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVS 229
+V L + + C + + +C G K A +GDSGGPL+ + GIVS
Sbjct: 143 EVKLRLMDPQACSH-FRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCA----GVAQGIVS 197
Query: 230 FGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
+G + P V+TR++ Y WI Q +
Sbjct: 198 YG--RSDAKPPAVFTRISHYRPWINQIL 223
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 178 bits (455), Expect = 3e-56
Identities = 54/269 (20%), Positives = 94/269 (34%), Gaps = 81/269 (30%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG+ + P WP+M ++ L G +CG +LI +V++AAHC + R
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRG----GHFCGATLIAPNFVMSAAHCVANVNVR-----AV 51
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
V LG +L R + +V I Y +
Sbjct: 52 RVVLGAHNLSRREPTRQ-------------------VFAVQRIFENGY-----------D 81
Query: 138 ATSLDF-------KRPSGLNNAV----------DFKN-----------VWLSGKESTVQR 169
+L + +N V N + + ++V +
Sbjct: 82 PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQ 141
Query: 170 QVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVS 229
++++ V S C + +C +R C GDSG PL+ + GI S
Sbjct: 142 ELNVTVV-TSLC--------RRSNVCTLVRGRQAGVCFGDSGSPLVCN----GLIHGIAS 188
Query: 230 FGNK-CGEPGYPGVYTRVTKYLDWIEQNM 257
F C YP + V ++++WI+ +
Sbjct: 189 FVRGGCASGLYPDAFAPVAQFVNWIDSII 217
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 185 bits (472), Expect = 7e-56
Identities = 56/307 (18%), Positives = 101/307 (32%), Gaps = 83/307 (27%)
Query: 8 CGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDT 67
CG + S R PW I + C G+LI ++VLTAAHC +D
Sbjct: 220 CGV------GNMSANASDQERTPWHVTIKPKS----QETCRGALISDQWVLTAAHCFRDG 269
Query: 68 RQRPFHAQQFTVRLGDIDLRREDEPS-----MPETYRVEEGLNPCPSDYY-YQASVLTIT 121
+ V +GD + E + + V N ++Y ++L +
Sbjct: 270 ND----HSLWRVNVGDPKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLA 325
Query: 122 SPRYLTG------IPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSGKEST--------- 166
++ +P +L +RP G E
Sbjct: 326 QKVKMSTHARPICLPCT----MEANLALRRPQG-------STCRDHENELLNKQSVPAHF 374
Query: 167 -VQRQVDLPVW-----ENSECDKTYFQP-------------ITDNFICAGLREGGKDACQ 207
L + E + C + Q +TD F+C+G + + C+
Sbjct: 375 VALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGT-QEDESPCK 433
Query: 208 GDSGGPLMMKKDGYWMQVGIVSFG-----------------NKCGEPGYPGVYTRVTKYL 250
G+SGG + +++ + QVG+VS+G + P + + +
Sbjct: 434 GESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQ 493
Query: 251 DWIEQNM 257
W+ Q++
Sbjct: 494 PWLRQHL 500
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 176 bits (448), Expect = 3e-55
Identities = 57/268 (21%), Positives = 94/268 (35%), Gaps = 79/268 (29%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG+++ P ++P++A+I G +CGG+LI R+V+TAA C +
Sbjct: 1 IVGGRKARPRQFPFLASIQNQG----RHFCGGALIHARFVMTAASCFQSQNPG-----VS 51
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
TV LG DLRR + S +++ Y +
Sbjct: 52 TVVLGAYDLRRRERQS--RQTFSIS----------------SMSENGY-----------D 82
Query: 138 ATSLDF-------KRPSGLNNAV----------DFKN-----------VWLSGKESTVQR 169
R + L ++V + G+ S R
Sbjct: 83 PQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPR 142
Query: 170 QVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVS 229
V++ V +C N +C G+ C GD G PL+ + + G+ S
Sbjct: 143 FVNVTVTPEDQC--------RPNNVCTGVLTRRGGICNGDGGTPLVCE----GLAHGVAS 190
Query: 230 FGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
F P +TRV + DWI+ +
Sbjct: 191 FSLGPC-GRGPDFFTRVALFRDWIDGVL 217
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 182 bits (463), Expect = 3e-53
Identities = 53/292 (18%), Positives = 103/292 (35%), Gaps = 55/292 (18%)
Query: 8 CGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDT 67
CG + + + PW A I + + C G+++ +VLTAAHC
Sbjct: 453 CGM------VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVD 506
Query: 68 RQRPFHAQQFTVRLGDIDLRRE-DEPSMPETYRVEEGLNPCPSDYY-------------- 112
+ V +G E + Y + ++Y
Sbjct: 507 DK----EHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 562
Query: 113 YQASVLTITSPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSGKESTVQRQVD 172
Y ++ I P T L + T+ ++ L A D K +++S +E + + +
Sbjct: 563 YGQTIRPICLPC--TEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLT-RKE 619
Query: 173 LPVWENSECD---------------KTYFQPITDNFICAGLREG--GKDACQGDSGGPLM 215
+ + + K + +T F+C G + C+GDSGGPL+
Sbjct: 620 VYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLI 679
Query: 216 MKKDGYWMQVGIVSFGNKCG----------EPGYPGVYTRVTKYLDWIEQNM 257
+ K ++QVG++S+G + + + L W+++ +
Sbjct: 680 VHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKL 731
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 173 bits (441), Expect = 4e-53
Identities = 39/275 (14%), Positives = 70/275 (25%), Gaps = 59/275 (21%)
Query: 3 SCLHGCGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAH 62
C+ + PW + + +CGG +I +VLT A
Sbjct: 81 QCVPHDQCACGV--LTSEKRAPDLQDLPWQVKLT---NSEGKDFCGGVIIRENFVLTTAK 135
Query: 63 CTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITS 122
C+ R TV+ ++ P ++
Sbjct: 136 CSLLHRN-------ITVKTYFNRTSQD-----PLMIKITH----------------VHVH 167
Query: 123 PRYLTGIP----AMVLFVEATSLDFKR-------PSGLNNAVDF---KNVWLSG------ 162
RY +++ + P LSG
Sbjct: 168 MRYDADAGENDLSLLEL--EWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGT 225
Query: 163 KESTVQRQVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYW 222
+ + E EC + +T C A G + + G W
Sbjct: 226 DLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCER---SSVAAMHWMDGSVVTREHRGSW 282
Query: 223 MQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
G++ G + + T+V++Y W +Q M
Sbjct: 283 FLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIM 316
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 155 bits (394), Expect = 7e-49
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 162 GKESTVQRQVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGY 221
+Q LP+ N+ C K + I D ICAG G +C GDSGGPL+ KK+G
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGA 58
Query: 222 WMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
W VGIVS+G+ PGVY RVT ++W++Q +
Sbjct: 59 WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 170 bits (431), Expect = 1e-48
Identities = 75/266 (28%), Positives = 112/266 (42%), Gaps = 31/266 (11%)
Query: 1 MFSCLHGCGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTA 60
F C P RVVGG + P WPW ++ +CGG+LI +VLTA
Sbjct: 545 SFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGM---HFCGGTLISPEWVLTA 601
Query: 61 AHCTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTI 120
AHC ++ + V LG + V ++L +
Sbjct: 602 AHCL----EKSPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLF---LEPTRKDIALLKL 652
Query: 121 TSPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSG-------KESTVQRQVDL 173
+SP +T V L PS D +++G + + ++ L
Sbjct: 653 SSPAVITD------KVIPACL----PSPNYVVADRTECFITGWGETQGTFGAGLLKEAQL 702
Query: 174 PVWENSECDKTYFQP--ITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFG 231
PV EN C++ F + +CAG GG D+CQGDSGGPL+ + ++ G+ S+G
Sbjct: 703 PVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWG 762
Query: 232 NKCGEPGYPGVYTRVTKYLDWIEQNM 257
C P PGVY RV++++ WIE M
Sbjct: 763 LGCARPNKPGVYVRVSRFVTWIEGVM 788
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 145 bits (369), Expect = 3e-43
Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 11/98 (11%)
Query: 169 RQVDLPVWENSECDKTYFQP---------ITDNFICAGLREGGKDACQGDSGGPLMMKKD 219
+QV +P+ EN CD Y I D+ +CAG +D+CQGDSGGPL+ K +
Sbjct: 146 KQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCKVN 203
Query: 220 GYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
G W+Q G+VS+G C +P PG+YTRVT YLDWI +
Sbjct: 204 GTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241
Score = 82.3 bits (204), Expect = 6e-19
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGGQE+ +WPW ++ + F CGGSLI ++VLTAAHC +
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHF-CGGSLIHPQWVLTAAHCVGPDVKDL---ATL 56
Query: 78 TVRLGDIDLRREDE 91
V+L + L +D+
Sbjct: 57 RVQLREQHLYYQDQ 70
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 136 bits (345), Expect = 1e-40
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 169 RQVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIV 228
+ V L + +N+ C + +T++ +CAG GGKD C GDSGGPL+ +G W GI
Sbjct: 63 QCVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLIC--NGMW--QGIT 118
Query: 229 SFGN-KCGEPGYPGVYTRVTKYLDWIEQNM 257
S+G+ CG P +YT++ YLDWI+ +
Sbjct: 119 SWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 135 bits (343), Expect = 1e-39
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 161 SGKESTVQRQVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMMKKDG 220
+ + R+V L V + +C + + IC G R K A +GDSGGPL+
Sbjct: 132 MRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCN--- 188
Query: 221 YWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
+ GIVS+G G P P V+TRV+ +L WI M
Sbjct: 189 -NVAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222
Score = 79.9 bits (198), Expect = 2e-18
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG+ES P P+MA + + + + CGG L+ +VLTAAHC
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQ-SPAGQSRCGGFLVREDFVLTAAHCWGSN---------I 50
Query: 78 TVRLGDIDLRREDEP 92
V LG +++R +
Sbjct: 51 NVTLGAHNIQRRENT 65
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 131 bits (332), Expect = 8e-38
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 157 NVWLSGKESTVQRQVDLPVWENSECDKTYF-QPITDNFICAGLREGGKDACQGDSGGPLM 215
V G+ +V L V ++ C+ + N IC G + + + DSGGPL+
Sbjct: 130 KVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFEEDSGGPLV 189
Query: 216 MKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLDWIEQNM 257
K GIVS+G + P V+TRV ++ WI++ M
Sbjct: 190 CK----RAAAGIVSYG--QTDGSAPQVFTRVLSFVSWIKKTM 225
Score = 82.2 bits (204), Expect = 4e-19
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG E P P+MA + +CGG L+ ++VLTAAHC +
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGRS---------M 51
Query: 78 TVRLGDIDLRREDEPS 93
TV LG +++ ++E
Sbjct: 52 TVTLGAHNIKAKEETQ 67
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 121 bits (307), Expect = 3e-34
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 157 NVWLSGKESTVQRQVDLPVWENSECDKTYFQPITDNFICAGLREGGKDACQGDSGGPLMM 216
V + V +++++ V + IC + C GDSGGPL+
Sbjct: 132 RVGAHDPPAQVLQELNVTVVTFF---------CRPHNICTFVPRRKAGICFGDSGGPLIC 182
Query: 217 KKDGYWMQVGIVSFGNK-CGEPGYPGVYTRVTKYLDWIEQNM 257
+ GI SF C +P +TRV Y+DWI +
Sbjct: 183 D----GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220
Score = 83.4 bits (207), Expect = 1e-19
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+VGG E+ P P+MA++ + G + F CGG+LI +VLTAAHC +D QR
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHF-CGGTLIHPSFVLTAAHCLRDIPQR-----LV 54
Query: 78 TVRLGDIDLRREDEP 92
V LG ++R ++
Sbjct: 55 NVVLGAHNVRTQEPT 69
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP:
b.47.1.2 PDB: 2kai_A 1hia_A
Length = 80
Score = 81.0 bits (201), Expect = 3e-20
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
++GG+E PW AI+ + F CGG L+ ++VLTAAHC D +
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYS----SFQCGGVLVNPKWVLTAAHCKNDN---------Y 47
Query: 78 TVRLGDIDLRREDEP 92
V LG +L +
Sbjct: 48 EVWLGRHNLFENENT 62
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B
1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F
1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F
2gct_B ...
Length = 131
Score = 77.2 bits (191), Expect = 4e-18
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 18 VVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+V G+E++PG WPW ++ +CGGSLI +V+TAAHC T
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGF---HFCGGSLINENWVVTAAHCGVTTSDV------- 50
Query: 78 TVRLGDIDLRREDEPS 93
V G+ D E
Sbjct: 51 -VVAGEFDQGSSSEKI 65
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 68.5 bits (167), Expect = 4e-14
Identities = 38/245 (15%), Positives = 74/245 (30%), Gaps = 39/245 (15%)
Query: 18 VVGG-----QESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPF 72
VV G + + P+ + ++ C G+LI +LT HC +T R +
Sbjct: 1 VVIGDDGRTKVANTRVAPYNSIAYI---TFGGSSCTGTLIAPNKILTNGHCVYNTASRSY 57
Query: 73 HAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAM 132
A+ + +M E Y +N S Y + +V+ + I
Sbjct: 58 SAKGSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDF--AVIKTDTN-----IGNT 110
Query: 133 VLFVEATSLDFKRPSGLNNAVDFKNVWLSGKESTVQRQVDLPVWENSECDKTYFQPITDN 192
V + + + + + + Q ++ V Y
Sbjct: 111 VGYRSIRQVTNLTGTTIK-ISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYY------- 162
Query: 193 FICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTK-YLD 251
D G+SG ++ D VG+ + G G + T +++
Sbjct: 163 ---------TIDTFSGNSGSAML---DQNQQIVGVHNAGYSNGTING---GPKATAAFVE 207
Query: 252 WIEQN 256
+I
Sbjct: 208 FINYA 212
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 62.4 bits (151), Expect = 6e-12
Identities = 32/213 (15%), Positives = 54/213 (25%), Gaps = 24/213 (11%)
Query: 26 PGRWPWMAAIFLHGTRRTEFWCGGSLIGT---RYVLTAAHCTKDTRQRPFHAQQFTVRLG 82
P P + +F + F C +++ + V TA HC D F F
Sbjct: 3 PADSPHIGKVFFSTNQGD-FVCSANIVASANQSTVATAGHCLHDGNGGQFARN-FVFAPA 60
Query: 83 DIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVEATSLD 142
E E D+ + + + + T + A+ +
Sbjct: 61 YDYGESEHGVWAAEELVTSAEWAN-RGDFEHDYAFAVLETKGGTTVQQQVGT---ASPIA 116
Query: 143 FKRPSGLNNAVDFKNVWLSGKESTVQRQVDLPVWENSECDKTYFQPITDNFICAGLREGG 202
F +P G + G + + T C
Sbjct: 117 FNQPRG-------QYYSAYGYPAAAPFNGQELHSCHGTATNDPMGSSTQGIPC------- 162
Query: 203 KDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCG 235
+ G SGGP + Q S+G
Sbjct: 163 -NMTGGSSGGPWFLGNGTGGAQNSTNSYGYTFL 194
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 3e-05
Identities = 51/275 (18%), Positives = 72/275 (26%), Gaps = 105/275 (38%)
Query: 1 MFSCLHGCGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGG---SLIGTRYV 57
M S + V V LP I L + G SL G
Sbjct: 338 MLSI-SNLTQEQVQD-YVNKTNSHLPAGKQ--VEISLVNGAKN-LVVSGPPQSLYGLNLT 392
Query: 58 LTAAHCTKDT-------RQR-------------PFHAQ--QFTVRLGDIDLRREDEPSMP 95
L A +R PFH+ L + DL + +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS--- 449
Query: 96 ETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDF 155
+ A + I P Y T + D
Sbjct: 450 -----------------FNAKDIQI--PVYDT----------------------FDGSDL 468
Query: 156 KNVWLSGKESTVQRQVDLPV-WENS-ECDKTY---FQPITDNFICAGLREGGKDACQGDS 210
+ + S E V + LPV WE + + T+ F P G G S
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--------G----------GAS 510
Query: 211 G-GPLMMK-KDGYWMQVGIVSFG----NKCGEPGY 239
G G L + KDG V ++ G N + G+
Sbjct: 511 GLGVLTHRNKDGTG--VRVIVAGTLDINPDDDYGF 543
Score = 35.0 bits (80), Expect = 0.022
Identities = 44/262 (16%), Positives = 77/262 (29%), Gaps = 110/262 (41%)
Query: 61 AHCTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVL-- 118
A+ T RP T+ G + E + V P+ ++ AS L
Sbjct: 3 AYST-----RPL-----TLSHGSL------EHVLL----V-------PTASFFIASQLQE 35
Query: 119 ----TITSP------------------RYLTGIPAMVLFVEATSLDFKRPSGLNNAVD-F 155
+ P ++L + ++V + D LN + F
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD----QVLNLCLTEF 91
Query: 156 KNVWLSGKE-----STVQRQVDLPVWENSECDKTYFQ-------PITDNFICAGLRE--- 200
+N +L G + + + ++ D + + E K Y P A R
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 201 ---------GGKDACQGDSGGPLMMKKDGYW--MQ---------VG--IVSFGNKCGE-- 236
GG QG++ D Y+ ++ VG I E
Sbjct: 152 GNAQLVAIFGG----QGNT--------DDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 237 ---PGYPGVYTRVTKYLDWIEQ 255
V+T+ L+W+E
Sbjct: 200 RTTLDAEKVFTQGLNILEWLEN 221
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 40.8 bits (94), Expect = 2e-04
Identities = 28/235 (11%), Positives = 56/235 (23%), Gaps = 35/235 (14%)
Query: 29 WPWMAAIFLHGTRRTEFWCGGSLI------GTRYVLTAAHCTKDTRQRP------FHAQQ 76
+ ++ C GSL+ Y LTA HC T ++ Q
Sbjct: 18 RRDIIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQN 77
Query: 77 FTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFV 136
T R + + + + + ++L + + +
Sbjct: 78 STCRAPNTPASGANGDGSMSQTQSGSTVK--ATYATSDFTLLELNNAANPAFNLFWAGWD 135
Query: 137 EATSLDFKRPSGLNNAVDFKNVWLSGKESTVQRQVDLPVWENSECDKTYFQPITDNFICA 196
+ + V K + S + + +
Sbjct: 136 RRDQNYPGAIAIHHPNVAEKRISNS---------------TSPTSFVAWGGGAGTTHLNV 180
Query: 197 GLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGN-KCGEPG--YPGVYTRVTK 248
+ G + S G + + +G + G C G Y RV
Sbjct: 181 QWQPSG-GVTEPGSSGSPIYSPEKRV--LGQLHGGPSSCSATGTNRSDQYGRVFT 232
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 35.2 bits (80), Expect = 0.015
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 28 RWPWMAAIFLHGTRRT-EFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQFTVRLGD 83
+ ++ T F G ++G +LT H T P + F +
Sbjct: 16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQ 72
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.064
Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 60/189 (31%)
Query: 34 AIFLHGTRRTE-----FWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQFTVRLGDIDLR- 87
++F W V+ H ++P ++ T+ + I L
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP---KESTISIPSIYLEL 435
Query: 88 ---REDEPSM----------PETYRVEEGLNPCPSDYYYQASVLTITSPRYL------TG 128
E+E ++ P+T+ ++ + P Y+Y ++
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS----------HIGHHLKNIE 485
Query: 129 IPAMVLFVEATSLDFKRPSGLNNAVDFKNVWLSGKESTVQRQVDLPVWENSECD-----K 183
P + LDF+ +L K ++ S + K
Sbjct: 486 HPERMTLFRMVFLDFR--------------FLEQK---IRHDSTAWNASGSILNTLQQLK 528
Query: 184 TYFQPITDN 192
Y I DN
Sbjct: 529 FYKPYICDN 537
Score = 31.7 bits (71), Expect = 0.23
Identities = 28/183 (15%), Positives = 51/183 (27%), Gaps = 57/183 (31%)
Query: 22 QESL----PGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQQF 77
+++L P + + + G GS G + + C Q + F
Sbjct: 141 RQALLELRPAKN-----VLIDGV-------LGS--G-KTWVALDVCLSYKVQCKMDFKIF 185
Query: 78 TVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITSPRYLTGIPAMVLFVE 137
+ L + E + E L YQ + + + I + ++
Sbjct: 186 WLNLKN---CNSPETVL-------EMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 138 ATSLDFKRPSGLNNA---VDFKNVWLSGKESTVQRQVDLPVWE--NSECDK----TYFQP 188
A + N + NV + W N C K T F+
Sbjct: 232 AELRRLLKSKPYENCLLVLL--NVQ------------NAKAWNAFNLSC-KILLTTRFKQ 276
Query: 189 ITD 191
+TD
Sbjct: 277 VTD 279
Score = 30.2 bits (67), Expect = 0.72
Identities = 44/293 (15%), Positives = 76/293 (25%), Gaps = 107/293 (36%)
Query: 29 W-PWMAAIFLHGTRRTEFWCGGSLIGTRY--------VLTAAHCTKDTRQRPFHAQQ--- 76
F + L+ TR+ T H + D +
Sbjct: 254 QNAKAWNAFNLSCK--------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 77 -FTVRLGDI--DLRRE-----------------DEPSMPETYR----------VE---EG 103
L DL RE D + + ++ +E
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 104 LNPC-PSDYYYQASVLTITSPRYLTGIPAMVL----------FVEATSLDFKRPSGLNNA 152
L P + + SV ++ IP ++L V + S +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-- 418
Query: 153 VDFKNVWLSGKESTVQ---RQVDLPVWENSECDKTYF--QPITDNFICAGLREGGKDACQ 207
K KEST+ ++L + + Y + I D++ K
Sbjct: 419 ---KQ----PKESTISIPSIYLEL----KVKLENEYALHRSIVDHY------NIPKTFDS 461
Query: 208 GDSGGPLMMKKDGYWMQVGIVSFG---NKCGEPGYPGVYTRVTKYLD--WIEQ 255
D P D Y+ G P ++ V +LD ++EQ
Sbjct: 462 DDLIPP---YLDQYFYS----HIGHHLKNIEHPERMTLFRMV--FLDFRFLEQ 505
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 32.6 bits (74), Expect = 0.083
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 191 DNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYL 250
+ + + GDSGG +GI S + C ++ VT+ L
Sbjct: 124 GDGPVYNMVRTTACSAGGDSGGAHFAGSVA----LGIHSGSSGCSGTAGSAIHQPVTEAL 179
Query: 251 D 251
Sbjct: 180 S 180
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 32.7 bits (74), Expect = 0.095
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 28 RWPWMAAIFLHGTRRT-EFWCGGSLIGTRYVLTAAHC 63
+ ++ T F G ++G +LT H
Sbjct: 16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHV 52
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 31.7 bits (72), Expect = 0.15
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 204 DAC--QGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLD 251
+ C GDSGGPL +G+ S G+ G + VT+ L
Sbjct: 133 NVCAEPGDSGGPLYSGTRA----IGLTSGGSGNCSSGGTTFFQPVTEALS 178
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 31.4 bits (71), Expect = 0.16
Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 191 DNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYL 250
L A GDSGG + G+ S G+ G Y V L
Sbjct: 124 PQGTVHSLTRTSVCAEPGDSGGSFISGTQA----QGVTSGGSGNCRTGGTTFYQEVNPML 179
Query: 251 D 251
+
Sbjct: 180 N 180
Score = 26.4 bits (58), Expect = 7.2
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 53 GTRYVLTAAHCTKD 66
G +TA HC
Sbjct: 26 GQPGFVTAGHCGSV 39
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 31.4 bits (71), Expect = 0.17
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 191 DNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYL 250
GL A GDSGG L+ G+ S G+ G + V L
Sbjct: 118 PEGTVRGLIRTTVCAEPGDSGGSLLAGNQA----QGVTSGGSGNCRTGGTTFFQPVNPIL 173
Query: 251 D 251
Sbjct: 174 Q 174
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 31.0 bits (70), Expect = 0.21
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 190 TDNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKY 249
+ I G+ + A GDSGG L +G+ S G+ G Y VT+
Sbjct: 117 GSSGIVYGMIQTNVCAQPGDSGGSLFAGSTA----LGLTSGGSGNCRTGGTTFYQPVTEA 172
Query: 250 LD 251
L
Sbjct: 173 LS 174
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 31.0 bits (70), Expect = 0.23
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 197 GLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPGVYTRVTKYLD 251
GL A GDSGGP + G+ S G G + + L
Sbjct: 127 GLTRTTACAEGGDSGGPWLTGSQA----QGVTSGGTGDCRSGGITFFQPINPLLS 177
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase,
translocation, single tranded RNA polymerase, RNA
protein complex, processivity, heterodimer; HET: 3AT;
2.06A {Vaccinia virus WR} PDB: 3er8_C* 3erc_C* 3owg_A
2ga9_D* 2gaf_D
Length = 479
Score = 31.2 bits (70), Expect = 0.38
Identities = 9/53 (16%), Positives = 19/53 (35%)
Query: 106 PCPSDYYYQASVLTITSPRYLTGIPAMVLFVEATSLDFKRPSGLNNAVDFKNV 158
P ++T+T+ Y + +V E + + DF++V
Sbjct: 332 PMKCIIDENNRIVTVTTKDYFSFKKCLVYLDENVLSSDILDLNADTSCDFESV 384
>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL;
1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A*
3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A
1l7q_A 1l7r_A
Length = 587
Score = 29.2 bits (65), Expect = 1.6
Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 22/146 (15%)
Query: 7 GCGRPDVPKFRVVGGQESLPGRWPWMAAIFLHGTRRTEFWCGGSLIGTR----YVLTAAH 62
VPK R+ W L T T F+ GGS L+ +
Sbjct: 326 TDALAGVPKVRL---FVMGIDEWRDETDWPLPDTAYTPFYLGGSGAANTSTGGGTLSTSI 382
Query: 63 CTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCPSDYYYQASVLTITS 122
++ + V L + + P R + VL ++
Sbjct: 383 SGTESADTYLYDPADPVPSLGGTLLFHNGDNGPADQRPIHD----------RDDVLCYST 432
Query: 123 -----PRYLTGIPAMVLFVEATSLDF 143
P +TG + LFV ++++D
Sbjct: 433 EVLTDPVEVTGTVSARLFVSSSAVDT 458
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 27.2 bits (60), Expect = 4.8
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 11/69 (15%)
Query: 191 DNFICAGLREGGKDACQGDSGGPLMMKKDGYWMQVGIVSFGNKCGEPGYPG--------V 242
GL +G +GDSGG + G++S GN G +
Sbjct: 124 AEGAVRGLTQGNACMGRGDSGGSWITSAG---QAQGVMSGGNVQSNGNNCGIPASQRSSL 180
Query: 243 YTRVTKYLD 251
+ R+ L
Sbjct: 181 FERLQPILS 189
Score = 26.9 bits (59), Expect = 5.6
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 53 GTRYVLTAAHCTKD 66
T+ +TA HC
Sbjct: 27 ATKGFVTAGHCGTV 40
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase;
2.40A {Sesbania mosaic virus}
Length = 191
Score = 27.1 bits (59), Expect = 5.0
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 18 VVGGQESL--PGRWPWMAAIFLHGTRRTEFWCGGSLIGTRYVLTAAHCTKDTRQRPFHAQ 75
V+G S G P G F C + G +LTA H ++ + A+
Sbjct: 1 VLGSFYSPVKAGDEPASLVAIKSGPTTIGFGCRTKIDGEDCLLTAHHVWCNSMRPTGLAK 60
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 27.2 bits (60), Expect = 5.3
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 49 GSLIGTRYVLTAAHCTKDTRQRPFHAQQFTVRLGDIDLRREDEPSMPETYRVEEGLNPCP 108
G LIG ++T H ++ + P ++E P E + P
Sbjct: 52 GVLIGKNTIVTNYHVAREAAKNP---SNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESP 108
Query: 109 SDYYYQASVLTITSP 123
+++ +
Sbjct: 109 YGQGLDLAIIKLKPN 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.459
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,179,496
Number of extensions: 241787
Number of successful extensions: 960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 211
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)