RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7307
(117 letters)
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 81.6 bits (202), Expect = 4e-20
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGPLL +R ++Q+ + G+VS+G CG PG+Y +V KY WI
Sbjct: 226 GDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGN 275
Score = 60.8 bits (148), Expect = 2e-12
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
GDSGGPLL +R ++Q+ + G+VS+G C
Sbjct: 225 GGDSGGPLLAERANQQFFLEGLVSFGATCGT 255
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 78.8 bits (195), Expect = 2e-19
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK-TPGVYVQVNKYLRWIYNT 81
GDSGGPL ++ ++++G+VSWGIGC PGVY +V + WI +T
Sbjct: 186 GDSGGPLSVKDGSGIFSLVGIVSWGIGCASGYPGVYSRVGFHAGWITDT 234
Score = 59.2 bits (144), Expect = 4e-12
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL ++ ++++G+VSWGIGCA
Sbjct: 185 QGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS 215
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 79.0 bits (195), Expect = 5e-19
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 34 GDSGGPLLLQRPDK-QWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 81
GDSGG ++ P+ +W G+VSWGIGC + G Y +V Y+ WI
Sbjct: 278 GDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYVDWIKKE 326
Score = 54.7 bits (132), Expect = 3e-10
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 83 KGDSGGPLLLQRPDK-QWTIIGVVSWGIGCAQ 113
+GDSGG ++ P+ +W G+VSWGIGC++
Sbjct: 277 QGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR 308
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 79.5 bits (196), Expect = 6e-19
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 34 GDSGGPLLLQRPDK-QWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNTAKGD 85
GDSGG ++ P+ +W G+VSWGIGC + G Y +V Y+ WI + +
Sbjct: 346 GDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYVDWIKKEMEEE 398
Score = 55.2 bits (133), Expect = 3e-10
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 83 KGDSGGPLLLQRPDK-QWTIIGVVSWGIGCAQ 113
+GDSGG ++ P+ +W G+VSWGIGC++
Sbjct: 345 QGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR 376
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 77.3 bits (191), Expect = 8e-19
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 34 GDSGGPLLLQRPDKQ-WTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNTAKGD 85
GDSGG ++ P+ W G+VSWGIGC + G Y +V Y+ WI + +
Sbjct: 189 GDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYVDWIKKEMEEE 241
Score = 54.6 bits (132), Expect = 2e-10
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 83 KGDSGGPLLLQRPDKQ-WTIIGVVSWGIGCAQ 113
+GDSGG ++ P+ W G+VSWGIGC++
Sbjct: 188 QGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR 219
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 76.8 bits (190), Expect = 9e-19
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTAK 83
GDSGGP+ + +W +G+VSWG GC + GVY +V+ + I + A+
Sbjct: 171 GDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAAR 222
Score = 57.6 bits (140), Expect = 2e-11
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGP+ + +W +G+VSWG GCA+
Sbjct: 170 QGDSGGPMFRKDNADEWVQVGIVSWGEGCAR 200
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 77.5 bits (191), Expect = 2e-18
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 34 GDSGGPLLLQRPDKQ--WTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNTAKGDSG 87
GDSGG +Q P+ + + G+VSWG CG G+Y +V Y+ WI T + +S
Sbjct: 275 GDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT-YGLYTRVKNYVDWIMKTMQENST 329
Score = 53.2 bits (128), Expect = 1e-09
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 83 KGDSGGPLLLQRPDKQ--WTIIGVVSWGIGCAQ 113
KGDSGG +Q P+ + + G+VSWG C
Sbjct: 274 KGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT 306
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 77.3 bits (190), Expect = 4e-18
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIY 79
GDSGGPL+ + + GVVSWG CGK PGVY +V Y WI
Sbjct: 505 GDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWIS 552
Score = 57.6 bits (139), Expect = 3e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
KGDSGGPL+ + + GVVSWG C +
Sbjct: 504 KGDSGGPLVCMDANNVTYVWGVVSWGENCGK 534
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 75.3 bits (186), Expect = 5e-18
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGPL D + GVVSWG GC + PGVY ++ + WI
Sbjct: 189 GDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238
Score = 57.6 bits (140), Expect = 2e-11
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL D + GVVSWG GCAQ
Sbjct: 188 QGDSGGPLSSVEADGRIFQAGVVSWGDGCAQ 218
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 74.7 bits (184), Expect = 1e-17
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTAKGDSG 87
GDSGGPL+ + T+ G+VSWG GC PGVY +V+ +L WI + K ++G
Sbjct: 219 GDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEENG 273
Score = 50.8 bits (122), Expect = 7e-09
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL+ + T+ G+VSWG GCA
Sbjct: 218 QGDSGGPLVCSL-QGRMTLTGIVSWGRGCAL 247
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 74.3 bits (183), Expect = 2e-17
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 34 GDSGGPLLLQRP-DKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGP +++ P + +W +G+VSWG GC + G Y V + +WI
Sbjct: 203 GDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKV 253
Score = 55.4 bits (134), Expect = 1e-10
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 83 KGDSGGPLLLQRP-DKQWTIIGVVSWGIGCAQ 113
+GDSGGP +++ P + +W +G+VSWG GC +
Sbjct: 202 EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDR 233
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 75.3 bits (185), Expect = 2e-17
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 34 GDSGGPLLLQRP-DKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGP +++ P + +W +G+VSWG GC + G Y V + +WI
Sbjct: 368 GDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKV 418
Score = 55.6 bits (134), Expect = 2e-10
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 83 KGDSGGPLLLQRP-DKQWTIIGVVSWGIGCAQ 113
+GDSGGP +++ P + +W +G+VSWG GC +
Sbjct: 367 EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDR 398
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 74.3 bits (183), Expect = 2e-17
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 34 GDSGGPLLLQRP-DKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGP +++ P + +W +G+VSWG GC + G Y V + +WI
Sbjct: 233 GDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKV 283
Score = 55.9 bits (135), Expect = 1e-10
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 83 KGDSGGPLLLQRP-DKQWTIIGVVSWGIGCAQ 113
+GDSGGP +++ P + +W +G+VSWG GC +
Sbjct: 232 EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDR 263
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 73.8 bits (182), Expect = 2e-17
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGP + + D + + G+VSWG GC + G+Y +V +L+WI +
Sbjct: 183 GDSGGPHVTRFKDT-YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231
Score = 54.1 bits (131), Expect = 3e-10
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGP + + D + + G+VSWG GCA+
Sbjct: 182 QGDSGGPHVTRFKDT-YFVTGIVSWGEGCAR 211
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 74.9 bits (184), Expect = 2e-17
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 33 TGDSGGPLLLQRP--DKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
TGD G PL P ++ +G+V+WGIGCG PGVY V + WI
Sbjct: 329 TGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQE 381
Score = 54.8 bits (132), Expect = 3e-10
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 83 KGDSGGPLLLQRP--DKQWTIIGVVSWGIGCAQ 113
GD G PL P ++ +G+V+WGIGC
Sbjct: 329 TGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGD 361
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 73.4 bits (181), Expect = 2e-17
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTAKGDSGGPLL 91
GDSGGP W + G+VSWG GC GVY +V++Y+ W+ + + +L
Sbjct: 190 GDSGGPHATHYRGT-WYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSEPRPGVL 248
Query: 92 LQRP 95
L+ P
Sbjct: 249 LRAP 252
Score = 52.3 bits (126), Expect = 2e-09
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
KGDSGGP W + G+VSWG GCA
Sbjct: 189 KGDSGGPHATHYRGT-WYLTGIVSWGQGCAT 218
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 72.6 bits (179), Expect = 4e-17
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIY 79
GDSGGPL+ W + G+VSWG C K PGVY +V WI
Sbjct: 180 GDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWIT 227
Score = 55.7 bits (135), Expect = 1e-10
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL+ W + G+VSWG CA+
Sbjct: 179 QGDSGGPLVSSDARDIWYLAGIVSWGDECAK 209
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 72.7 bits (179), Expect = 4e-17
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGPL+ + T++G++SWG+GCG+ PGVY +V YL WI +
Sbjct: 201 GDSGGPLVCLNDGR-MTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDN 249
Score = 52.3 bits (126), Expect = 2e-09
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL+ + T++G++SWG+GC Q
Sbjct: 200 QGDSGGPLVCLNDGR-MTLVGIISWGLGCGQ 229
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 72.7 bits (179), Expect = 5e-17
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 34 GDSGGPLL-LQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGP++ L R QW ++G VSWG CGK GVY ++ WI
Sbjct: 196 GDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRV 246
Score = 53.4 bits (129), Expect = 6e-10
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 83 KGDSGGPLL-LQRPDKQWTIIGVVSWGIGCAQ 113
GDSGGP++ L R QW ++G VSWG C +
Sbjct: 195 AGDSGGPMVTLNRERGQWYLVGTVSWGDDCGK 226
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C*
1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C
1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C
2gmt_C* ...
Length = 97
Score = 69.1 bits (170), Expect = 6e-17
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKT--PGVYVQVNKYLRWIYNT 81
GDSGGPL+ ++ + WT++G+VSWG T PGVY +V + W+ T
Sbjct: 45 GDSGGPLVCKK-NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 93
Score = 50.2 bits (121), Expect = 1e-09
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
GDSGGPL+ ++ + WT++G+VSWG
Sbjct: 44 MGDSGGPLVCKK-NGAWTLVGIVSWGSSTCS 73
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 72.2 bits (178), Expect = 6e-17
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGPL+ Q + +W + GV S+G C PGVY +V+++ WI +
Sbjct: 185 GDSGGPLMCQE-NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSF 233
Score = 53.0 bits (128), Expect = 8e-10
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL+ Q + +W + GV S+G CA
Sbjct: 184 QGDSGGPLMCQE-NNRWFLAGVTSFGYECAL 213
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 71.8 bits (177), Expect = 8e-17
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGP + + + G++SWG C G+Y +V++Y+ WI
Sbjct: 183 GDSGGPHVTEVEGT-SFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEK 231
Score = 52.6 bits (127), Expect = 1e-09
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGP + + + G++SWG CA
Sbjct: 182 QGDSGGPHVTEVEGT-SFLTGIISWGEECAM 211
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 73.2 bits (180), Expect = 8e-17
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 34 GDSGGPLLLQRP---DKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTAKGDSGG 88
GDSGGP + + +W + G+VSWG GC PGVY +V+ + WI+ K S
Sbjct: 306 GDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEA 365
Query: 89 P 89
Sbjct: 366 S 366
Score = 51.7 bits (124), Expect = 3e-09
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 83 KGDSGGPLLLQRP---DKQWTIIGVVSWGIGCAQVLK 116
+GDSGGP + + +W + G+VSWG GCA K
Sbjct: 305 QGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQK 341
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 71.9 bits (177), Expect = 1e-16
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKT--PGVYVQVNKYLRWIYNTAKGDSG 87
GDSGGP++ W ++G+VSWG GCG GVY +V++YL WI+ +
Sbjct: 189 GDSGGPMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKEA 243
Score = 51.9 bits (125), Expect = 2e-09
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGP++ W ++G+VSWG GC
Sbjct: 188 EGDSGGPMVASF-HGTWFLVGLVSWGEGCGL 217
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 71.1 bits (175), Expect = 2e-16
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGPL+ + T+ G+VSWG GC PGVY +V+ +L WI +
Sbjct: 196 GDSGGPLVCSLQGR-MTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 50.3 bits (121), Expect = 1e-08
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL+ + T+ G+VSWG GCA
Sbjct: 195 QGDSGGPLVCSLQGR-MTLTGIVSWGRGCAL 224
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 72.6 bits (178), Expect = 2e-16
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTAKG 84
GDSGGPL + ++ W ++G+ SWG GC + PGVY V +Y+ WI +
Sbjct: 573 GDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA 624
Score = 53.3 bits (128), Expect = 1e-09
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
KGDSGGPL + ++ W ++G+ SWG GCAQ
Sbjct: 572 KGDSGGPLSCKH-NEVWHLVGITSWGEGCAQ 601
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 71.6 bits (176), Expect = 2e-16
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 34 GDSGGPLLLQRP-DKQWTIIGVVSWGIGCG--KTPGVYVQVNKYLRWIYNTAKGDSGGPL 90
GDSGGPL+ + + + ++G+ SWG+GC K PGVY YL WI + + +
Sbjct: 197 GDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKIGSTAVHMI 256
Query: 91 LLQRPDKQWT 100
L T
Sbjct: 257 QLPTASPAST 266
Score = 52.0 bits (125), Expect = 3e-09
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 83 KGDSGGPLLLQRP-DKQWTIIGVVSWGIGCAQ 113
+GDSGGPL+ + + + ++G+ SWG+GCA+
Sbjct: 196 QGDSGGPLMCKDSAENSYVVVGITSWGVGCAR 227
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 71.1 bits (175), Expect = 2e-16
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGPL ++ + G++SWG GCG+ PGVY +V Y+ WI +
Sbjct: 189 GDSGGPLACEKNGV-AYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR 237
Score = 50.3 bits (121), Expect = 1e-08
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL ++ + G++SWG GC +
Sbjct: 188 QGDSGGPLACEKNGV-AYLYGIISWGDGCGR 217
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 70.7 bits (174), Expect = 2e-16
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTAKGDSG 87
GDSGGPL+ + + W ++G+ SWG GC + PGVY +V +Y+ WI + G
Sbjct: 186 GDSGGPLVCKH-NGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQSSDG 240
Score = 50.7 bits (122), Expect = 6e-09
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
KGDSGGPL+ + + W ++G+ SWG GCA+
Sbjct: 185 KGDSGGPLVCKH-NGMWRLVGITSWGEGCAR 214
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 71.2 bits (175), Expect = 3e-16
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGPL ++ + G++SWG GCG+ PGVY +V Y+ WI +
Sbjct: 224 GDSGGPLACEKNGV-AYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR 272
Score = 51.2 bits (123), Expect = 6e-09
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL ++ + G++SWG GC +
Sbjct: 223 QGDSGGPLACEKNGV-AYLYGIISWGDGCGR 252
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 70.9 bits (174), Expect = 7e-16
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 34 GDSGGPLLLQRP-DKQWTIIGVVSWG-IGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGG L+ ++W + G+VSWG + CG+ GVY +V Y+ WI N
Sbjct: 348 GDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENI 399
Score = 50.1 bits (120), Expect = 2e-08
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 83 KGDSGGPLLLQRP-DKQWTIIGVVSWG-IGCAQ 113
+GDSGG L+ ++W + G+VSWG + C +
Sbjct: 347 RGDSGGALVFLDSETERWFVGGIVSWGSMNCGE 379
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 69.1 bits (170), Expect = 9e-16
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 81
GDSGGPLL G+VS+G G P V+ +V+ +L WI T
Sbjct: 179 GDSGGPLLCN-----NVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTT 221
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
KGDSGGPLL G+VS+G
Sbjct: 178 KGDSGGPLLCN-----NVAHGIVSYGKSSGV 203
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 69.2 bits (170), Expect = 1e-15
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 34 GDSGGPLLLQ-RPDKQWTIIGVVSWG-IGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGG L+ ++W + G+VSWG + CG+ GVY +V Y+ WI N
Sbjct: 187 GDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENI 238
Score = 49.6 bits (119), Expect = 2e-08
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 83 KGDSGGPLLLQ-RPDKQWTIIGVVSWG-IGCAQ 113
+GDSGG L+ ++W + G+VSWG + C +
Sbjct: 186 RGDSGGALVFLDSETERWFVGGIVSWGSMNCGE 218
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 68.8 bits (169), Expect = 1e-15
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTAKG 84
GDSGGPL + + W ++G+ SWG GC + PGVY V +Y+ WI +
Sbjct: 186 GDSGGPLSCKHNEV-WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA 237
Score = 50.3 bits (121), Expect = 7e-09
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
KGDSGGPL + + W ++G+ SWG GCAQ
Sbjct: 185 KGDSGGPLSCKHNEV-WHLVGITSWGEGCAQ 214
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 68.7 bits (169), Expect = 1e-15
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 81
GDSGGPLL G+VS+G K P ++ +V+ Y+ WI
Sbjct: 180 GDSGGPLLCA-----GVAHGIVSYGHPDAKPPAIFTRVSTYVPWINAV 222
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
GDSGGPLL G+VS+G A+
Sbjct: 179 MGDSGGPLLCA-----GVAHGIVSYGHPDAK 204
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 68.7 bits (169), Expect = 1e-15
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG-CGKTPGVYVQVNKYLRWIYNTAKGDSGGP 89
GD G PL+ + GV S+ +G CG+ P + +V + WI GP
Sbjct: 173 GDGGTPLVCE-----GLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNNPGPGP 224
Score = 42.5 bits (101), Expect = 4e-06
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
GD G PL+ + GV S+ +G
Sbjct: 172 NGDGGTPLVCE-----GLAHGVASFSLGPCG 197
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 68.7 bits (169), Expect = 1e-15
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 81
GDSGGPL+ G+VS+G G P +V+ ++ WI T
Sbjct: 181 GDSGGPLVCN-----KVAQGIVSYGRNNGMPPRACTKVSSFVHWIKKT 223
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
KGDSGGPL+ G+VS+G
Sbjct: 180 KGDSGGPLVCN-----KVAQGIVSYGRNNGM 205
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 69.2 bits (170), Expect = 1e-15
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTAKGDSGGPL 90
GDSGGPL W + G+VSWG CG PGVY + Y WI + +
Sbjct: 192 GDSGGPLSCPVEGL-WYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTELQPRVV 249
Score = 49.6 bits (119), Expect = 2e-08
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL W + G+VSWG C
Sbjct: 191 QGDSGGPLSCPVEGL-WYLTGIVSWGDACGA 220
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 68.7 bits (169), Expect = 1e-15
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 81
GDSGGPL+ G+VS+G G TP VY +++ +L WI++T
Sbjct: 180 GDSGGPLVCN-----GVAQGIVSYGRNDGTTPDVYTRISSFLSWIHST 222
Score = 42.1 bits (100), Expect = 7e-06
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
GDSGGPL+ G+VS+G
Sbjct: 179 SGDSGGPLVCN-----GVAQGIVSYGRNDGT 204
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 68.3 bits (168), Expect = 1e-15
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTA 82
GDSGGP++ T+IG VSWG GC + GVY V +I A
Sbjct: 178 GDSGGPIVDSS----NTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA 224
Score = 50.2 bits (121), Expect = 8e-09
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 84 GDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
GDSGGP++ T+IG VSWG GCA+
Sbjct: 178 GDSGGPIVDSS----NTLIGAVSWGNGCAR 203
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 68.8 bits (169), Expect = 2e-15
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KTPGVYVQVNKYLRWIYNT 81
GD+GGPL+ DK + + GV SWG+GC PGVYV+V++++ WI
Sbjct: 195 GDAGGPLVCFEKDK-YILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGV 243
Score = 49.9 bits (120), Expect = 1e-08
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQVLK 116
+GD+GGPL+ DK + + GV SWG+GCA+ K
Sbjct: 194 QGDAGGPLVCFEKDK-YILQGVTSWGLGCARPNK 226
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 68.3 bits (168), Expect = 2e-15
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 81
GDSGGPLL G+VS+G K P V+ +++ Y WI
Sbjct: 180 GDSGGPLLCA-----GVAQGIVSYGRSDAKPPAVFTRISHYRPWINQI 222
Score = 42.5 bits (101), Expect = 5e-06
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
KGDSGGPLL G+VS+G A+
Sbjct: 179 KGDSGGPLLCA-----GVAQGIVSYGRSDAK 204
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 68.4 bits (168), Expect = 2e-15
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KTPGVYVQVNKYLRWIYNT 81
GDSGGPL+ ++ + WT++G+VSWG TPGVY +V + W+ T
Sbjct: 193 GDSGGPLVCKK-NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 241
Score = 49.9 bits (120), Expect = 1e-08
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
GDSGGPL+ ++ + WT++G+VSWG
Sbjct: 192 MGDSGGPLVCKK-NGAWTLVGIVSWGSSTCS 221
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 69.7 bits (170), Expect = 2e-15
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KTPGVYVQVNKYLRWIYNT 81
GDSGGPL+ DK + + GV SWG+GC PGVYV+V++++ WI
Sbjct: 739 GDSGGPLVCFEKDK-YILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGV 787
Score = 52.7 bits (126), Expect = 2e-09
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 74 YLRWIYNTAKGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+L ++ +GDSGGPL+ DK + + GV SWG+GCA+
Sbjct: 729 HLAGGTDSCQGDSGGPLVCFEKDK-YILQGVTSWGLGCAR 767
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 68.4 bits (168), Expect = 2e-15
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTA 82
GDSGGPL + G+VSWG GC + PGVY +V+ ++ WI A
Sbjct: 187 GDSGGPLAASD-TGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA 236
Score = 51.8 bits (125), Expect = 3e-09
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL + G+VSWG GCA+
Sbjct: 186 QGDSGGPLAASD-TGSTYLAGIVSWGYGCAR 215
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 68.0 bits (167), Expect = 2e-15
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KTPGVYVQVNKYLRWIYNT 81
GD GGPL+ ++ K ++GV+ G GC PG++V+V Y +WI+
Sbjct: 177 GDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKI 225
Score = 49.2 bits (118), Expect = 3e-08
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GD GGPL+ ++ K ++GV+ G GCA
Sbjct: 176 EGDYGGPLVCEQ-HKMRMVLGVIVPGRGCAI 205
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 68.0 bits (167), Expect = 3e-15
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK-TPGVYVQVNKYLRWIYNTAK 83
GD+G P + Q T++GV ++ + P V+ +V Y+ WI + K
Sbjct: 181 GDAGDPTVQQ-----DTLVGVAAYFPKRPEGAPEVFTKVGSYVSWIQDIIK 226
Score = 47.2 bits (113), Expect = 1e-07
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
GD+G P + Q T++GV ++ +
Sbjct: 180 SGDAGDPTVQQ-----DTLVGVAAYFPKRPE 205
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 67.9 bits (167), Expect = 3e-15
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 81
DSGGPL+ + G+VS+G G P V+ +V ++ WI T
Sbjct: 182 EDSGGPLVCK-----RAAAGIVSYGQTDGSAPQVFTRVLSFVSWIKKT 224
Score = 40.6 bits (96), Expect = 3e-05
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+ DSGGPL+ + G+VS+G
Sbjct: 181 EEDSGGPLVCK-----RAAAGIVSYGQTDGS 206
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 67.6 bits (166), Expect = 4e-15
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWG--IGCG--KTPGVYVQVNKYLRWIYNT 81
GDSGGPL Q + QW + G+VS+G +GC P V+ +V+ Y+ WI +
Sbjct: 186 GDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSV 237
Score = 49.1 bits (118), Expect = 2e-08
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWG--IGCAQVLK 116
GDSGGPL Q + QW + G+VS+G +GC K
Sbjct: 185 NGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHK 220
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 67.7 bits (166), Expect = 4e-15
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGPL+ + + W GVVSWG GC + PG+Y +V YL WI++
Sbjct: 192 GDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHY 240
Score = 49.9 bits (120), Expect = 1e-08
Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GDSGGPL+ + + W GVVSWG GCAQ
Sbjct: 191 QGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQ 220
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 67.2 bits (165), Expect = 4e-15
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK-TPGVYVQVNKYLRWIYNT 81
GD+G P + + T++GV S+ P V+++V Y+ I +
Sbjct: 184 GDAGDPAV-----QNGTLVGVASYISSMPSEFPSVFLRVGYYVLDIKDI 227
Score = 46.8 bits (112), Expect = 1e-07
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCA 112
GD+G P + + T++GV S+
Sbjct: 183 YGDAGDPAV-----QNGTLVGVASYISSMP 207
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 66.9 bits (164), Expect = 7e-15
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KTPGVYVQVNKYLRWIYNTAKGDSGGP 89
GD GGPL + W + G++ C + P V+ +V+ ++ WI+ +
Sbjct: 176 GDYGGPLACFTHNS-WVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLGHHHH 232
Score = 48.4 bits (116), Expect = 4e-08
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
+GD GGPL + W + G++ CA+
Sbjct: 175 EGDYGGPLACFTHNS-WVLEGIIIPNRVCAR 204
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 66.5 bits (163), Expect = 8e-15
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSW--GIGCG--KTPGVYVQVNKYLRWIYNT 81
GDSGGPL D W + GV S+ GC K P V+ +V+ ++ WI T
Sbjct: 185 GDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDET 236
Score = 49.1 bits (118), Expect = 2e-08
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSW--GIGCAQVLK 116
GDSGGPL D W + GV S+ GC + K
Sbjct: 184 NGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKK 219
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 67.6 bits (165), Expect = 1e-14
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGI--GCGK----------TPGVYVQVNKYLRWIYNT 81
GDSGGPL++ + ++ +GV+SWG+ C ++ + + L W+
Sbjct: 430 GDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 488
Query: 82 AKGDSGG 88
+ + G
Sbjct: 489 LQDEDLG 495
Score = 51.4 bits (123), Expect = 6e-09
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGI--GCAQ 113
+GDSGGPL++ + ++ +GV+SWG+ C
Sbjct: 429 RGDSGGPLIVHK-RSRFIQVGVISWGVVDVCKN 460
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 66.0 bits (162), Expect = 1e-14
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKT--PGVYVQVNKYLRWIYNTAKGDS 86
GDSGGP++ + GVVSWG GC + PGVY +V Y++WI NT +S
Sbjct: 179 GDSGGPVVCN-----GQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS 228
Score = 47.1 bits (113), Expect = 1e-07
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQVLK 116
+GDSGGP++ + GVVSWG GCAQ K
Sbjct: 178 QGDSGGPVVCN-----GQLQGVVSWGDGCAQKNK 206
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 67.2 bits (164), Expect = 2e-14
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 34 GDSGGPLLLQ-----RPDKQWTIIGVVSWG-IGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGPL + G+VS G + CG+ PG+Y V +Y++WI +T
Sbjct: 316 GDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDT 371
Score = 46.8 bits (111), Expect = 2e-07
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 83 KGDSGGPLLLQ-----RPDKQWTIIGVVSWG-IGCAQ 113
KGDSGGPL + G+VS G + C Q
Sbjct: 315 KGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQ 351
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 65.6 bits (161), Expect = 2e-14
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKT--PGVYVQVNKYLRWIYNT 81
GDSGGP++ + G+VSWG GC + PGVY +V Y+ WI T
Sbjct: 175 GDSGGPVVCS-----GKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQT 219
Score = 47.5 bits (114), Expect = 7e-08
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQVLK 116
+GDSGGP++ + G+VSWG GCAQ K
Sbjct: 174 QGDSGGPVVCS-----GKLQGIVSWGSGCAQKNK 202
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 65.3 bits (160), Expect = 2e-14
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK-TPGVYVQVNKYLRWIYNTAK 83
GDSGGPL+ IG+VS+G C P VY +V+ ++ WI K
Sbjct: 176 GDSGGPLVAN-----GAQIGIVSFGSPCALGEPDVYTRVSSFVSWINANLK 221
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 84 GDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
GDSGGPL+ IG+VS+G CA
Sbjct: 176 GDSGGPLVAN-----GAQIGIVSFGSPCAL 200
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 64.4 bits (158), Expect = 4e-14
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKT--PGVYVQVNKYLRWIYNT 81
GDSGGP++ + GVVSWG GC + PGVY +V + W+ +T
Sbjct: 174 GDSGGPVVCN-----GELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218
Score = 46.3 bits (111), Expect = 2e-07
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQVLK 116
+GDSGGP++ + GVVSWG GCA+
Sbjct: 173 QGDSGGPVVCN-----GELQGVVSWGYGCAEPGN 201
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 65.1 bits (158), Expect = 8e-14
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCG------------KTPGVYVQVNKYLRWIYNT 81
GDSGGPL++ + ++ +GV+SWG+ ++ + + L W+
Sbjct: 672 GDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 730
Query: 82 AKGDSGG 88
+ + G
Sbjct: 731 LQDEDLG 737
Score = 50.1 bits (119), Expect = 2e-08
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGI--GCAQ 113
+GDSGGPL++ + ++ +GV+SWG+ C
Sbjct: 671 RGDSGGPLIVHK-RSRFIQVGVISWGVVDVCKN 702
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 63.7 bits (156), Expect = 9e-14
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG-CGKT--PGVYVQVNKYLRWIYNTAKGDSGGP 89
GDSGGPL+ G+ SWG C + P Y +V +L WI N G++
Sbjct: 182 GDSGGPLICN-----GQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGNTDAS 235
Score = 42.9 bits (102), Expect = 3e-06
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIG-CAQVLK 116
KGDSGGPL+ G+ SWG CAQ K
Sbjct: 181 KGDSGGPLICN-----GQFQGIASWGDDPCAQPHK 210
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 63.7 bits (156), Expect = 1e-13
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KTPGVYVQV-NKYLRWIYNT 81
GD+GGPL+ + +VS G CG PG+Y + KY WI +
Sbjct: 188 GDAGGPLICK-----GVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSN 233
Score = 44.9 bits (107), Expect = 6e-07
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQ 113
KGD+GGPL+ + +VS G C
Sbjct: 187 KGDAGGPLICK-----GVFHAIVSGGHECGV 212
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 64.0 bits (156), Expect = 1e-13
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
G + + W + GV+ G + +V++Y W
Sbjct: 227 WMDGSVVT-REHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQI 274
Score = 44.7 bits (106), Expect = 9e-07
Identities = 4/34 (11%), Positives = 8/34 (23%), Gaps = 2/34 (5%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQVLK 116
G + + W + GV+
Sbjct: 226 HWMDGSVVT-REHRGSWFLTGVLGSQ-PVGGQAH 257
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 63.4 bits (155), Expect = 2e-13
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG--CG--KTPGVYVQVNKYLRWIYNT 81
GDSGGPL Q D QW + G+VS+G G C K P V+ +V+ Y+ WI
Sbjct: 198 GDSGGPLNCQA-DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQK 248
Score = 45.3 bits (108), Expect = 5e-07
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIG--CAQVLK 116
GDSGGPL Q D QW + G+VS+G G C K
Sbjct: 197 NGDSGGPLNCQA-DGQWDVRGIVSFGSGLSCNTFKK 231
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 62.6 bits (153), Expect = 2e-13
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWG-IGCG--KTPGVYVQVNKYLRWIYNTAKGDS 86
GDSGGPL+ + GV SWG + CG P V V+V Y++WI +T +S
Sbjct: 188 GDSGGPLMCD-----GVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIAENS 238
Score = 42.2 bits (100), Expect = 6e-06
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWG-IGCAQVLK 116
GDSGGPL+ + GV SWG + C K
Sbjct: 187 VGDSGGPLMC-----DGVLQGVTSWGYVPCGTPNK 216
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 62.2 bits (152), Expect = 3e-13
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGI-GCGKT--PGVYVQVNKYLRWIYNT 81
GDSGGPL+ + G+V+ G CG+ P VY +V Y WI +
Sbjct: 178 GDSGGPLICN-----GEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSI 223
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGI-GCAQVLK 116
GDSGGPL+ + G+V+ G C Q LK
Sbjct: 177 HGDSGGPLICN-----GEMHGIVAGGSEPCGQHLK 206
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 62.2 bits (152), Expect = 3e-13
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 8/51 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWG-IGCGK--TPGVYVQVNKYLRWIYNT 81
GDSGGPL+ + T+ G+VSWG CG+ PGVY QV K+ +WI +T
Sbjct: 174 GDSGGPLVCR-----GTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDT 219
Score = 42.9 bits (102), Expect = 3e-06
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWG-IGCAQVLK 116
GDSGGPL+ + T+ G+VSWG C Q
Sbjct: 173 NGDSGGPLVCR-----GTLQGLVSWGTFPCGQPND 202
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 62.2 bits (152), Expect = 3e-13
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWG--IGCG--KTPGVYVQVNKYLRWIYNT 81
GDSGGPL + Q+ + GV S+ +GC + P V+ +V+ Y+ WI N
Sbjct: 186 GDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNV 236
Score = 43.0 bits (102), Expect = 4e-06
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWG--IGCAQ 113
+GDSGGPL + Q+ + GV S+ +GC
Sbjct: 185 QGDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNV 216
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 63.2 bits (154), Expect = 3e-13
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 81
G + + W + GV+ G + +V++Y W
Sbjct: 268 WMDGSVVTREHRGS-WFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQI 315
Score = 43.9 bits (104), Expect = 2e-06
Identities = 4/34 (11%), Positives = 8/34 (23%), Gaps = 2/34 (5%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQVLK 116
G + + W + GV+
Sbjct: 267 HWMDGSVVTREHRGS-WFLTGVLGSQ-PVGGQAH 298
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 62.2 bits (152), Expect = 4e-13
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQVNKYLRWIYNTAKGDS 86
GDSGGPL+ K + GV+S+ C P V V Y+ WI +
Sbjct: 180 GDSGGPLVCG---KGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRSA 232
Score = 42.6 bits (101), Expect = 4e-06
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIG-CAQVLK 116
KGDSGGPL+ K + GV+S+ C + K
Sbjct: 179 KGDSGGPLVCG---KGRVLAGVLSFSSRVCTDIFK 210
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 62.2 bits (152), Expect = 4e-13
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSW--GIGCG--KTPGVYVQVNKYLRWIYNT 81
GDSGGPL Q + + + GV S+ GC K P V+ +V+ Y+ W+
Sbjct: 185 GDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGI 235
Score = 42.6 bits (101), Expect = 4e-06
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSW--GIGCAQ 113
GDSGGPL Q + + + GV S+ GC
Sbjct: 184 NGDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNA 215
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 62.2 bits (152), Expect = 4e-13
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWG-IGCG--KTPGVYVQVNKYLRWIYNTAKGDS 86
DSGGPL+ + G S+G + CG P +Y + K+ WI +T ++
Sbjct: 187 DDSGGPLICD-----GILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMKNA 237
Score = 42.6 bits (101), Expect = 4e-06
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWG-IGCAQVLK 116
+ DSGGPL+ + G S+G + C +
Sbjct: 186 RDDSGGPLICD-----GILQGTTSYGPVPCGKPGV 215
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 61.8 bits (151), Expect = 4e-13
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGI-GCGK--TPGVYVQVNKYLRWIYNTAKGDS 86
GDSGGPL+ G+VS+G CG+ PGVY +V Y WI + G++
Sbjct: 178 GDSGGPLICN-----GQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGNT 228
Score = 42.2 bits (100), Expect = 6e-06
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGI-GCAQVLK 116
GDSGGPL+ G+VS+G C Q LK
Sbjct: 177 GGDSGGPLICN-----GQFQGIVSFGAHPCGQGLK 206
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 61.9 bits (151), Expect = 5e-13
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSW----GIGCG--KTPGVYVQVNKYLRWIYNTA 82
GDSGGPL D ++GV SW G+G P VY +V+ YL WI + +
Sbjct: 189 GDSGGPLNCP--DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDNS 241
Score = 45.3 bits (108), Expect = 6e-07
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSW----GIGCAQ 113
GDSGGPL D ++GV SW G+G
Sbjct: 188 NGDSGGPLNCP--DGGTRVVGVTSWVVSSGLGACL 220
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 61.4 bits (150), Expect = 6e-13
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQVNKYLRWIYNTAKG 84
GDSGGPL+ + G+VS+G CG PGVY + K+ WI T +
Sbjct: 175 GDSGGPLICN-----GYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQA 223
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIG-CAQVLK 116
GDSGGPL+ + G+VS+G C QV
Sbjct: 174 NGDSGGPLICN-----GYLQGLVSFGKAPCGQVGV 203
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 61.4 bits (150), Expect = 7e-13
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWG-IGCGKT--PGVYVQVNKYLRWIYNTAKGDS 86
GDSGGP++ ++ G+VSWG C + PGVY + K+ +WI T + +S
Sbjct: 177 GDSGGPVVCN-----GSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQANS 227
Score = 42.5 bits (101), Expect = 6e-06
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWG-IGCAQVLK 116
+GDSGGP++ ++ G+VSWG CA+ +
Sbjct: 176 QGDSGGPVVCN-----GSLQGLVSWGDYPCARPNR 205
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 61.4 bits (150), Expect = 7e-13
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCG---KTPGVYVQVNKYLRWIYNT 81
GDSGGPL G+ S+G G P + +V +L WI
Sbjct: 176 GDSGGPLNYN-----GLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQ 221
Score = 40.6 bits (96), Expect = 3e-05
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 84 GDSGGPLLLQRPDKQWTIIGVVSWGIGC 111
GDSGGPL G+ S+G
Sbjct: 176 GDSGGPLNYN-----GLTYGITSFGAAA 198
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 61.5 bits (150), Expect = 8e-13
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGI-GCG--KTPGVYVQVNKYLRWIYNT 81
GDSGGPL+ + G+ SWG C + P +Y +V Y +WI +T
Sbjct: 187 GDSGGPLVCN-----GVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDT 232
Score = 42.2 bits (100), Expect = 7e-06
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGI-GCAQVLK 116
GDSGGPL+ + G+ SWG CA +
Sbjct: 186 SGDSGGPLVCN-----GVLQGITSWGSEPCALPER 215
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 61.0 bits (149), Expect = 9e-13
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQVNKYLRWIYNT 81
GDSGGPL+ + G+ SWG CG + PGVY ++ +Y WI T
Sbjct: 178 GDSGGPLVCD-----GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKT 223
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIG-CAQVLK 116
+GDSGGPL+ + G+ SWG C + K
Sbjct: 177 QGDSGGPLVCD-----GMLQGITSWGSDPCGKPEK 206
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 61.0 bits (149), Expect = 1e-12
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGI-GCG--KTPGVYVQVNKYLRWIYNTAKGDS 86
GDSGGPL+ G++S G C + PG+Y +V Y WI + G++
Sbjct: 175 GDSGGPLICN-----GQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNT 225
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGI-GCAQ 113
KGDSGGPL+ G++S G CAQ
Sbjct: 174 KGDSGGPLIC-----NGQFQGILSVGGNPCAQ 200
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 60.7 bits (148), Expect = 1e-12
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQVNKYLRWIYNTAKG 84
GDSGGPL+ + G+ S G C KTP +Y ++ K+ WI K
Sbjct: 185 GDSGGPLI-----CDGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKE 233
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIG-CAQVLK 116
GDSGGPL+ + G+ S G CA+
Sbjct: 184 AGDSGGPLI-----CDGVLQGITSGGATPCAKPKT 213
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 60.6 bits (148), Expect = 1e-12
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQVNKYLRWIYNT 81
GD+GGPL+ + GVV+ G CG K PG+Y +V Y WI +
Sbjct: 181 GDAGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSV 226
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIG-CAQVLK 116
KGD+GGPL+ + GVV+ G C K
Sbjct: 180 KGDAGGPLVCG-----GVLEGVVTSGSRVCGNRKK 209
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 60.2 bits (147), Expect = 1e-12
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWG-IGCG--KTPGVYVQVNKYLRWIYNT 81
GDSG PL+ I G+ S+ GC P + V +++ WI +
Sbjct: 171 GDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSI 216
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWG-IGCAQVLK 116
GDSG PL+ I G+ S+ GCA L
Sbjct: 170 FGDSGSPLVCN-----GLIHGIASFVRGGCASGLY 199
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 60.7 bits (148), Expect = 2e-12
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGI-GCG--KTPGVYVQVNKYLRWIYNT 81
DSGGPL+ + G+ SWG CG P VY ++ K+ WI T
Sbjct: 190 HDSGGPLICD-----GILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRET 235
Score = 42.2 bits (100), Expect = 7e-06
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGI-GCAQVLK 116
+ DSGGPL+ + G+ SWG C + +
Sbjct: 189 EHDSGGPLICD-----GILQGITSWGPEPCGEPTE 218
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 60.2 bits (147), Expect = 2e-12
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGI-GCG--KTPGVYVQVNKYLRWIYNTAK 83
GDSGGPL+ I G+ S+ I GC P + +V Y+ WI +T +
Sbjct: 174 GDSGGPLICD-----GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR 221
Score = 40.6 bits (96), Expect = 3e-05
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGI-GCAQVLK 116
GDSGGPL+ I G+ S+ I GCA L
Sbjct: 173 FGDSGGPLIC-----DGIIQGIDSFVIWGCATRLF 202
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 59.9 bits (146), Expect = 2e-12
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWG-IGCG--KTPGVYVQVNKYLRWIYNTAKG 84
GDSGGPL+ + G+VSWG I CG + PGVY V +Y WI T +
Sbjct: 174 GDSGGPLVCG-----DHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA 222
Score = 41.0 bits (97), Expect = 2e-05
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWG-IGCAQVLK 116
+GDSGGPL+ + G+VSWG I C K
Sbjct: 173 QGDSGGPLVC-----GDHLRGLVSWGNIPCGSKEK 202
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 59.9 bits (146), Expect = 2e-12
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCG---KTPGVYVQVNKYLRWIYN 80
GDSGGP +L + +IGVVS+ G G P + +V Y+ WI
Sbjct: 178 GDSGGPFVLS---DKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQ 224
Score = 42.2 bits (100), Expect = 7e-06
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 84 GDSGGPLLLQRPDKQWTIIGVVSWGIGC 111
GDSGGP +L + +IGVVS+ G
Sbjct: 178 GDSGGPFVLS---DKNLLIGVVSFVSGA 202
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 59.9 bits (146), Expect = 2e-12
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQVNKYLRWIYNTAKGDS 86
GDSGG L+ G+ SWG C V+ +V + +WI T + +S
Sbjct: 187 GDSGGALICD-----GVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIEKNS 237
Score = 40.3 bits (95), Expect = 3e-05
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIG-CAQVLK 116
GDSGG L+ G+ SWG CA
Sbjct: 186 LGDSGGALIC-----DGVFQGITSWGYSECADFND 215
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 59.2 bits (143), Expect = 9e-12
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 20/65 (30%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGI-----GCGK--------------TPGVYVQVNKY 74
G+SGG + L+R ++ +G+VSWG+ G ++ + +
Sbjct: 434 GESGGAVFLER-RFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRM 492
Query: 75 LRWIY 79
W+
Sbjct: 493 QPWLR 497
Score = 47.7 bits (113), Expect = 1e-07
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGI-----GCAQ 113
KG+SGG + L+R ++ +G+VSWG+ G A
Sbjct: 433 KGESGGAVFLER-RFRFFQVGLVSWGLYNPCLGSAD 467
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 57.6 bits (140), Expect = 2e-11
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGI--GCG--KTPGVYVQV-NKYLRWIYNTAKG 84
GDSG PLL + GV S+G+ CG + PGVY+ + K+L WI T KG
Sbjct: 182 GDSGSPLLCE-----GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKG 232
Score = 39.5 bits (93), Expect = 6e-05
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGI--GCAQVLK 116
GDSG PLL + GV S+G+ C
Sbjct: 181 NGDSGSPLLC-----EGVFRGVTSFGLENKCGDPRG 211
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 54.9 bits (133), Expect = 6e-11
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG-CGKT--PGVYVQVNKYLRWIYNT 81
GDSGGPL+ + W G+ SWG CG P +Y ++ YL WI +T
Sbjct: 102 GDSGGPLIC---NGMWQ--GITSWGHTPCGSANKPSIYTKLIFYLDWIDDT 147
Score = 36.0 bits (84), Expect = 7e-04
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 83 KGDSGGPLLLQRPDKQWTIIGVVSWGIG-CAQVLK 116
GDSGGPL+ + W G+ SWG C K
Sbjct: 101 MGDSGGPLIC---NGMWQ--GITSWGHTPCGSANK 130
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 40.0 bits (93), Expect = 4e-05
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 11/91 (12%)
Query: 31 AQTGDSGGPLLLQRPDKQWTIIG-------VVSWGIGCGKTPGVYVQVNKYLRWIYNTAK 83
G + I G + V + + +T
Sbjct: 109 NTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYYTIDTFS 168
Query: 84 GDSGGPLLLQRPDKQWTIIGVVSWGIGCAQV 114
G+SG +L D+ I+GV + G +
Sbjct: 169 GNSGSAML----DQNQQIVGVHNAGYSNGTI 195
Score = 39.2 bits (91), Expect = 7e-05
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNK-YLRWIYN 80
G+SG +L D+ I+GV + G G T + ++ +I
Sbjct: 169 GNSGSAML----DQNQQIVGVHNAGYSNG-TINGGPKATAAFVEFINY 211
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 37.0 bits (85), Expect = 4e-04
Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 1/53 (1%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNTAKGDS 86
G SGGP L S+G + YN A +
Sbjct: 167 GSSGGPWFLGN-GTGGAQNSTNSYGYTFLPNVMFGPYFGSGAQQNYNYASTTN 218
Score = 35.1 bits (80), Expect = 0.003
Identities = 11/53 (20%), Positives = 13/53 (24%), Gaps = 1/53 (1%)
Query: 60 GCGKTPGVYVQVNKYLRWIYNTAKGDSGGPLLLQRPDKQWTIIGVVSWGIGCA 112
C T + N G SGGP L S+G
Sbjct: 143 SCHGTATNDPMGSSTQGIPCNMTGGSSGGPWFLGN-GTGGAQNSTNSYGYTFL 194
>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta
helix, heme uptake, spate, hydrolase; 2.20A {Escherichia
coli} PDB: 3ak5_A
Length = 1048
Score = 35.0 bits (79), Expect = 0.003
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 31 AQTGDSGGPLLL-QRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNTAKGDSGGP 89
+ GDSG PL +W ++GV++ G G G + + +I D+ P
Sbjct: 202 GEAGDSGSPLFAFDTVQNKWVLVGVLTAGNGAGGRGNNWAVIPL--DFIGQKFNEDNDAP 259
Query: 90 LLLQRPDKQWTIIGVVS 106
+ + + S
Sbjct: 260 VTFRTSEGGALEWSFNS 276
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 33.9 bits (77), Expect = 0.007
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 15 QLVRADYDVFNRTSRQAQT------GDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVY 68
+ + + Q G+SG P+ +++ +IG+ G+ V+
Sbjct: 142 TMWESKGKITYLKGEAMQYDLSTTGGNSGSPVF----NEKNEVIGIHWGGVPNEFNGAVF 197
Query: 69 VQ---VNKYLRWIYNTAKGDSGGPLLLQRPDK 97
+ N + I + + P PD
Sbjct: 198 INENVRNFLKQNIEDINFANDDQPNNPDNPDN 229
Score = 30.0 bits (67), Expect = 0.14
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 81 TAKGDSGGPLLLQRPDKQWTIIGVVSWGIGCAQV 114
T G+SG P+ +++ +IG+ G+
Sbjct: 164 TTGGNSGSPVF----NEKNEVIGIHWGGVPNEFN 193
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta
helix, hydrolase, M protease, secreted, transmembrane,
virulence; 1.75A {Haemophilus influenzae}
Length = 989
Score = 33.2 bits (74), Expect = 0.012
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 31 AQTGDSGGPLLL-QRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNTAKGDSGGP 89
A GDSG PL + R +W +G + G K + K + D+ G
Sbjct: 258 AVLGDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKSWQEWNIYK-PEFAKTVLDKDTAGS 316
Query: 90 LLLQRPDKQWTIIG 103
L W G
Sbjct: 317 LTGSNTQYNWNPTG 330
>3syj_A Adhesion and penetration protein autotransporter; bacterial
aggregation and biofilm formation, SELF-associatin
autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Length = 1011
Score = 32.8 bits (73), Expect = 0.020
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 31 AQTGDSGGPLLL-QRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNTAKGDSGGP 89
GDSG P+ + ++W I G++ G + V K + + D
Sbjct: 213 GSKGDSGSPMFIYDAEKQKWLINGILREGNPFEGKENGFQLVRK--SYFDEIFERDLHTS 270
Query: 90 LLLQRPDKQWTI 101
L + + +TI
Sbjct: 271 LYTRAGNGVYTI 282
Score = 30.9 bits (68), Expect = 0.089
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)
Query: 21 YDVFNRTSRQAQ-TGDSGGPLLLQRPDKQWTIIGVV----SWGIGCGKTPGVYVQVNKYL 75
Y R Q + + G G G G + +Y
Sbjct: 148 YPERVRIGSGRQFWRNDQDKGDQVAGAYHYLTAGNTHNQRGAGNGYSYLGGDVRKAGEYG 207
Query: 76 RWIYNTAKGDSGGPLLL-QRPDKQWTIIGVVSWGIG 110
+KGDSG P+ + ++W I G++ G
Sbjct: 208 PLPIAGSKGDSGSPMFIYDAEKQKWLINGILREGNP 243
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 32.7 bits (73), Expect = 0.022
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 31 AQTGDSGGPLLL-QRPDKQWTIIGVVSWG--IGCGKTPGVYVQVNKYLRWIYN---TAKG 84
A GD+G L + K+W + G V GK Y + N+ +
Sbjct: 203 ASQGDAGSALFVYDNQKKKWVVAGTVWGIYNYANGKNHAAYSKWNQTTIDNLKNKYSYNV 262
Query: 85 DSGGPLLLQRPDKQWTIIG 103
D G + + + T G
Sbjct: 263 DMSGAQVATIENGKLTGTG 281
Score = 30.0 bits (66), Expect = 0.16
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 81 TAKGDSGGPLLL-QRPDKQWTIIGVVSWG 108
++GD+G L + K+W + G V
Sbjct: 203 ASQGDAGSALFVYDNQKKKWVVAGTVWGI 231
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase;
2.40A {Sesbania mosaic virus}
Length = 191
Score = 30.1 bits (67), Expect = 0.11
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 31 AQTGDSGGPLLLQRPDKQWTIIGV-VSWGIGCGKTPGVYVQVNKYLRWIYNTAKGDSGGP 89
++ G PL+ T G S + G + L TA G SG P
Sbjct: 94 SKLGVKSTPLVCPSSKDVITCYGGSSSDCLMSGVGSSSTSEFTWKLTHTCPTAAGWSGTP 153
Query: 90 LL 91
L
Sbjct: 154 LY 155
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 30.2 bits (68), Expect = 0.11
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 26 RTSRQAQTGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 67
RT+ + GDSGG +G+ S GC T G
Sbjct: 133 RTTACSAGGDSGGAHFAGS-----VALGIHSGSSGCSGTAGS 169
Score = 26.0 bits (57), Expect = 2.8
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 58 GIGCGKTPGVYVQVNKYLRWIYN-------TAKGDSGGPLLLQRPDKQWTIIGVVSWGIG 110
+ G V V VN +YN +A GDSGG +G+ S G
Sbjct: 108 KVTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDSGGAHFAGS-----VALGIHSGSSG 162
Query: 111 CA 112
C+
Sbjct: 163 CS 164
>2hal_A Hepatitis A protease 3C; 3C protease, inhibitor design; HET: BBL;
1.35A {Hepatitis a virus} SCOP: b.47.1.4 PDB: 2h6m_A*
2h9h_A* 2cxv_A* 2a4o_A* 1hav_A 1qa7_A*
Length = 212
Score = 29.7 bits (66), Expect = 0.15
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 62 GKTPGVYVQVNKYLRWIYNTAKGDSGGPLLLQRPDKQWTIIGVVSWGIG----CAQVLKS 117
V + V++ R G GG L+ Q I+G+ G V +
Sbjct: 148 NDGTTVDLTVDQAWRGKGEGLPGMCGGALVSSNQSIQNAILGIHVAGGNSILVAKLVTQE 207
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 28.7 bits (64), Expect = 0.30
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 24 FNRTSRQAQTGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 67
RT+ A+ GDSGG LL GV S G G +T G
Sbjct: 125 LIRTTVCAEPGDSGGSLLAGN-----QAQGVTSGGSGNCRTGGT 163
Score = 25.6 bits (56), Expect = 3.6
Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 12/61 (19%)
Query: 58 GIGCGKTPGVYVQVNKYLRWIYNTAK-------GDSGGPLLLQRPDKQWTIIGVVSWGIG 110
G CG + V + + GDSGG LL GV S G G
Sbjct: 102 GWHCGTITALNSSVTYPEGTVRGLIRTTVCAEPGDSGGSLLAGN-----QAQGVTSGGSG 156
Query: 111 C 111
Sbjct: 157 N 157
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 28.3 bits (63), Expect = 0.45
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 34 GDSGGPLLLQRPDKQWTIIGVVSWGIG 60
G+SG P+L + ++G+
Sbjct: 155 GNSGSPVL----NSNNELVGIHFASDV 177
Score = 28.3 bits (63), Expect = 0.45
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 84 GDSGGPLLLQRPDKQWTIIGVVSWGIG 110
G+SG P+L + ++G+
Sbjct: 155 GNSGSPVL----NSNNELVGIHFASDV 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.47
Identities = 12/99 (12%), Positives = 21/99 (21%), Gaps = 30/99 (30%)
Query: 20 DYDVFNRT-SRQAQTGDSGGPLLLQRPDKQWTII----------GVVSWG-IGCGKTPGV 67
++ R + R + V+ G +G GKT
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--- 164
Query: 68 YVQVNKYLR-------------WIYNTAKGDSGGPLLLQ 93
W+ N +S +L
Sbjct: 165 -WVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEM 201
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 28.3 bits (63), Expect = 0.48
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 24 FNRTSRQAQTGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 67
RT+ A+ GDSGGP L GV S G G ++ G+
Sbjct: 128 LTRTTACAEGGDSGGPWLTGS-----QAQGVTSGGTGDCRSGGI 166
Score = 24.4 bits (53), Expect = 8.6
Identities = 16/62 (25%), Positives = 17/62 (27%), Gaps = 12/62 (19%)
Query: 58 GIGCGKTPGVYVQVNKYLRWIYN-------TAKGDSGGPLLLQRPDKQWTIIGVVSWGIG 110
G CG V + GDSGGP L GV S G G
Sbjct: 105 GWRCGTIQSKNQTVRYAEGTVTGLTRTTACAEGGDSGGPWLTGS-----QAQGVTSGGTG 159
Query: 111 CA 112
Sbjct: 160 DC 161
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 28.3 bits (63), Expect = 0.49
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 26 RTSRQAQTGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 67
RTS A+ GDSGG + GV S G G +T G
Sbjct: 133 RTSVCAEPGDSGGSFISGT-----QAQGVTSGGSGNCRTGGT 169
Score = 25.7 bits (56), Expect = 3.8
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 12/61 (19%)
Query: 58 GIGCGKTPGVYVQVNKYLRWIYN-------TAKGDSGGPLLLQRPDKQWTIIGVVSWGIG 110
G CG V+ +++ GDSGG + GV S G G
Sbjct: 108 GWYCGTIQARNQTVSYPQGTVHSLTRTSVCAEPGDSGGSFISGT-----QAQGVTSGGSG 162
Query: 111 C 111
Sbjct: 163 N 163
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 27.9 bits (62), Expect = 0.56
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 26 RTSRQAQTGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 67
RT+ A+ GDSGGPL IG+ S G G + G
Sbjct: 131 RTNVCAEPGDSGGPLYSGT-----RAIGLTSGGSGNCSSGGT 167
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels,
C-terminal alpha-beta extra domain; 1.90A {Porcine
respiratory and reproductivesyndrome virus} PDB: 3fao_A
Length = 213
Score = 27.8 bits (61), Expect = 0.67
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 52 IGVVSWGIGCGKTPGVYVQVNKYLRWIYNTAKGDSGGPLLLQRPDKQWTIIGV 104
G W G PGV + TA GDSG P++ + ++GV
Sbjct: 97 TGRAYWLTSSGVEPGVIGNGFAFCF----TACGDSGSPVI----TEAGELVGV 141
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol
protease, RNA replication, ribosomal frameshifting,
catalytic triad, membrane; 2.00A {Human astrovirus 1}
Length = 163
Score = 27.7 bits (62), Expect = 0.79
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 45 PDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNTAKGDSGGPLLLQRPDKQWTIIGV 104
T++ V+ + + L + T G SG P+ DK ++ V
Sbjct: 88 DYSCVTVMAYVNEDLVVSTAAAMVY--GNTLSYAVRTQDGMSGAPVC----DKYCRVLAV 141
Query: 105 VSWGIGCAQ 113
G
Sbjct: 142 HQTNTGYTG 150
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 27.5 bits (61), Expect = 1.0
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 7 LVLICAAHQLVRADYDVFNRT 27
L+ I AH+ A Y ++ ++
Sbjct: 274 LLSILRAHEAQDAGYRMYRKS 294
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 27.2 bits (60), Expect = 1.1
Identities = 12/105 (11%), Positives = 29/105 (27%), Gaps = 22/105 (20%)
Query: 19 ADYDV----FNRTSRQAQTGDSGGPLLLQRPDK----QWTII-----GVVSWGIGCGKTP 65
D+ + GD P + + ++ + +
Sbjct: 111 QGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQSQ-- 168
Query: 66 GVYVQVNKYLRWIYNTAKGDSGGPLLLQRPDKQWTIIGVVSWGIG 110
++Y + G+SG + + + +IG+ S G
Sbjct: 169 IEMFNDSQYFGYTEV---GNSGSGIF----NLKGELIGIHSGKGG 206
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 27.2 bits (60), Expect = 1.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 24 FNRTSRQAQTGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 67
+T+ AQ GDSGG L T +G+ S G G +T G
Sbjct: 125 MIQTNVCAQPGDSGGSLFAGS-----TALGLTSGGSGNCRTGGT 163
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 27.2 bits (61), Expect = 1.3
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 7 LVLICAAHQLVRADYDVFNRT 27
L+ I AH+ A Y ++ ++
Sbjct: 261 LLSILRAHEAQDAGYRMYRKS 281
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 26.9 bits (59), Expect = 1.3
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 24 FNRTSRQAQTGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPG 66
+ + GDSGG + GV+S G
Sbjct: 131 LTQGNACMGRGDSGGSWI----TSAGQAQGVMSGGNVQSNGNN 169
Score = 26.1 bits (57), Expect = 2.9
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 11/58 (18%)
Query: 58 GIGCGKTPGVYVQVNKYLRWIYN-------TAKGDSGGPLLLQRPDKQWTIIGVVSWG 108
G CG V N + +GDSGG + GV+S G
Sbjct: 108 GYQCGTITAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWI----TSAGQAQGVMSGG 161
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1,
NTF2-superfamily protein with unknown function,
structural genomics; HET: MSE; 1.25A {Bacillus cereus
atcc 10987}
Length = 134
Score = 26.5 bits (58), Expect = 1.5
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 12 AAHQLVRADYDVFNRTSRQAQTGDSGGPLLLQRPDKQWTIIGVVSWG 58
A +++R+ Y+ ++ +WT +G
Sbjct: 5 ANLEIIRSTYEGSAS-------SNAKHLAEALSEKVEWTEAEGFPYG 44
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
cysteine protease, capsid protein, core protein; 1.9A
{Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
2j92_A 2wv4_A 2wv5_A
Length = 209
Score = 26.6 bits (58), Expect = 1.7
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 70 QVNKYLRWIYNTAKGDSGGPLLLQRPDKQWTIIGVVSWGIG----CAQVLKS 117
+ + T G +GG +L + I+G S G C+ V +S
Sbjct: 148 TMPGLFAYKAATRAGYAGGAVLAKDG-ADTFIVGTHSAGGNGVGYCSCVSRS 198
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 26.8 bits (60), Expect = 1.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 7 LVLICAAHQLVRADYDVF 24
L L+ AHQLV Y+
Sbjct: 234 LTLVSRAHQLVMEGYNWC 251
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 26.2 bits (58), Expect = 3.1
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 7 LVLICAAHQLVRADYDVF 24
L I +H++ Y+V
Sbjct: 398 LDYIIRSHEVKAEGYEVA 415
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 26.1 bits (58), Expect = 3.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 LVLICAAHQLVRADYDVF 24
L LIC AHQ+V Y+ F
Sbjct: 241 LDLICRAHQVVEDGYEFF 258
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 26.1 bits (58), Expect = 3.3
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 7 LVLICAAHQLVRADYDVF 24
L I +H+L
Sbjct: 249 LRKIFRSHELRMGGVQFE 266
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 26.0 bits (58), Expect = 3.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 LVLICAAHQLVRADYDVF 24
L LIC AHQ+V Y+ F
Sbjct: 240 LDLICRAHQVVEDGYEFF 257
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 25.6 bits (57), Expect = 4.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 7 LVLICAAHQLVRADYDVF 24
L I +H++ Y+V
Sbjct: 245 LDYIIRSHEVKAEGYEVA 262
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 91
Score = 24.9 bits (54), Expect = 4.1
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 31 AQTGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQ 70
+ LL+ + +WT VV W G +Y
Sbjct: 2 SSGSSGEHGLLVHKAVDKWTTEEVVLWLEQLGPWASLYRD 41
>2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA
polymerase, picornavirus, protease, hydrolase,
transferase; 3.40A {Human poliovirus 1} SCOP: b.47.1.4
e.8.1.4
Length = 644
Score = 25.5 bits (55), Expect = 5.1
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 68 YVQVNKYLRWIYNTAKGDSGGPLLLQRPDKQWTIIGVVSWGIG 110
Q + L + + T G +GG + +IG+ G G
Sbjct: 129 GRQTARTLMYNFPTRAGQAGGVIT-----CTGKVIGMHVGGNG 166
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A,
isocitrate lyase, persistence, GLCB, structural
genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP:
c.1.13.1 PDB: 1n8w_A* 2gq3_A*
Length = 741
Score = 25.1 bits (55), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
Query: 50 TIIG-VVSW---GIGCGKTP 65
+I+G VV W G+GC K P
Sbjct: 604 SILGYVVRWVDQGVGCSKVP 623
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA,
cysteine-sulfenic lyase; HET: ACO PG4; 1.95A
{Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A
1d8c_A* 2jqx_A
Length = 731
Score = 25.1 bits (55), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 4/20 (20%)
Query: 50 TIIG-VVSW---GIGCGKTP 65
I+G VV W GIGC K P
Sbjct: 602 GILGYVVRWVEQGIGCSKVP 621
>3k6y_A Serine protease, possible membrane-associated serine protease;
oxidative stress, disulfide, BENT helix, HY protease;
1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Length = 237
Score = 24.6 bits (54), Expect = 9.4
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 53 GVVSWGIGCGKTPGVYVQVNKYLRWIYNTA----KGDSGGPLLLQRPDKQWTIIGVVS 106
+ P +Y R +Y +GDSGGPL+ D ++GVV
Sbjct: 147 ARIR-EAIRLSGPDIYGDPEPVTRDVYTIRADVEQGDSGGPLI----DLNGQVLGVVF 199
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.463
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,828,084
Number of extensions: 95113
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 236
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)