Query psy731
Match_columns 494
No_of_seqs 195 out of 653
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 23:31:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03022 MRJP: Major royal jel 100.0 2.5E-72 5.5E-77 567.2 30.0 280 127-491 1-287 (287)
2 PF03022 MRJP: Major royal jel 99.7 9.2E-16 2E-20 155.5 19.4 213 136-407 32-253 (287)
3 PF08450 SGL: SMP-30/Gluconola 99.4 1.1E-10 2.3E-15 114.4 27.2 232 130-459 3-246 (246)
4 PLN02919 haloacid dehalogenase 99.1 2.9E-08 6.4E-13 116.7 29.1 285 124-457 565-876 (1057)
5 COG3386 Gluconolactonase [Carb 98.9 1.3E-06 2.8E-11 89.9 27.2 238 134-462 33-279 (307)
6 PF08450 SGL: SMP-30/Gluconola 98.8 2.4E-07 5.2E-12 90.8 16.4 190 199-463 10-210 (246)
7 PLN02919 haloacid dehalogenase 98.7 1.8E-06 3.9E-11 101.9 22.8 236 184-457 568-821 (1057)
8 PF10282 Lactonase: Lactonase, 98.4 0.00021 4.5E-09 74.2 25.9 274 61-421 35-326 (345)
9 PRK11028 6-phosphogluconolacto 98.3 0.00048 1E-08 70.2 26.1 241 130-456 38-291 (330)
10 TIGR03866 PQQ_ABC_repeats PQQ- 98.3 0.0012 2.7E-08 64.1 27.6 210 157-456 12-224 (300)
11 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0025 5.5E-08 67.0 27.3 120 138-303 13-142 (352)
12 PF10282 Lactonase: Lactonase, 98.1 0.001 2.3E-08 68.9 24.4 254 131-457 41-310 (345)
13 COG2706 3-carboxymuconate cycl 98.1 0.0014 3.1E-08 67.8 24.2 260 125-459 38-310 (346)
14 TIGR03866 PQQ_ABC_repeats PQQ- 98.1 0.0044 9.5E-08 60.2 26.5 226 131-456 35-266 (300)
15 PRK11028 6-phosphogluconolacto 98.1 0.0013 2.9E-08 67.0 23.7 222 157-456 13-245 (330)
16 COG4257 Vgb Streptogramin lyas 98.0 0.00067 1.4E-08 68.5 19.9 250 127-481 62-315 (353)
17 COG4257 Vgb Streptogramin lyas 98.0 0.00056 1.2E-08 69.0 18.6 243 107-458 92-336 (353)
18 PF06977 SdiA-regulated: SdiA- 97.8 0.006 1.3E-07 61.2 21.6 66 390-461 172-245 (248)
19 TIGR02604 Piru_Ver_Nterm putat 97.6 0.074 1.6E-06 55.8 28.1 81 400-482 281-365 (367)
20 COG3386 Gluconolactonase [Carb 97.4 0.014 3.1E-07 60.3 19.4 182 199-456 35-229 (307)
21 COG3391 Uncharacterized conser 97.3 0.066 1.4E-06 56.7 23.6 203 129-420 76-284 (381)
22 TIGR02658 TTQ_MADH_Hv methylam 97.3 0.11 2.5E-06 54.7 24.8 288 71-421 11-332 (352)
23 COG2706 3-carboxymuconate cycl 97.3 0.093 2E-06 54.7 23.4 165 197-421 153-325 (346)
24 KOG4659|consensus 97.1 0.017 3.7E-07 68.0 17.5 207 199-460 325-554 (1899)
25 COG3391 Uncharacterized conser 97.0 0.045 9.8E-07 57.9 18.6 163 128-364 117-284 (381)
26 PF02239 Cytochrom_D1: Cytochr 96.7 0.48 1E-05 50.1 22.9 89 332-447 272-365 (369)
27 KOG4499|consensus 96.6 0.14 3E-06 51.2 16.9 80 331-421 160-243 (310)
28 KOG1214|consensus 96.1 0.045 9.8E-07 62.2 11.5 158 275-477 1033-1203(1289)
29 PF02239 Cytochrom_D1: Cytochr 96.0 0.83 1.8E-05 48.3 20.2 197 137-420 5-203 (369)
30 KOG1539|consensus 96.0 0.33 7.1E-06 55.4 17.5 201 126-435 448-662 (910)
31 PRK02888 nitrous-oxide reducta 95.7 0.87 1.9E-05 51.3 19.3 120 331-462 323-454 (635)
32 PF13360 PQQ_2: PQQ-like domai 95.6 2.1 4.6E-05 40.7 23.4 58 157-226 4-62 (238)
33 PF02333 Phytase: Phytase; In 95.5 1.3 2.8E-05 47.3 19.0 87 388-478 207-302 (381)
34 PF06433 Me-amine-dh_H: Methyl 95.5 0.059 1.3E-06 56.4 8.8 79 136-226 248-327 (342)
35 KOG1520|consensus 95.4 0.46 1E-05 50.3 15.2 148 202-407 128-282 (376)
36 PF03088 Str_synth: Strictosid 95.2 0.046 1E-06 46.5 5.8 55 393-456 2-74 (89)
37 TIGR02604 Piru_Ver_Nterm putat 94.6 1.3 2.7E-05 46.6 16.0 59 391-459 126-203 (367)
38 KOG1520|consensus 94.5 0.57 1.2E-05 49.6 12.8 163 262-457 115-282 (376)
39 PF03088 Str_synth: Strictosid 94.1 0.26 5.6E-06 42.0 7.6 70 187-297 1-87 (89)
40 COG3204 Uncharacterized protei 94.0 7.2 0.00015 40.4 19.1 59 154-226 106-165 (316)
41 PF00058 Ldl_recept_b: Low-den 93.8 0.13 2.7E-06 37.5 4.5 41 401-449 1-42 (42)
42 PRK04922 tolB translocation pr 93.8 11 0.00024 40.3 23.6 177 199-458 215-398 (433)
43 COG4247 Phy 3-phytase (myo-ino 93.7 1.6 3.4E-05 44.4 13.4 30 388-418 204-233 (364)
44 PRK11138 outer membrane biogen 93.6 11 0.00024 39.7 26.0 115 137-307 69-189 (394)
45 PRK00178 tolB translocation pr 93.4 12 0.00027 39.6 25.4 73 199-306 210-284 (430)
46 PRK05137 tolB translocation pr 93.3 7.5 0.00016 41.6 19.1 31 197-227 299-330 (435)
47 cd00200 WD40 WD40 domain, foun 93.2 6.9 0.00015 36.1 25.7 202 157-456 74-278 (289)
48 PRK04922 tolB translocation pr 93.0 9.3 0.0002 40.9 19.2 29 198-226 302-331 (433)
49 PF05694 SBP56: 56kDa selenium 92.7 2.5 5.4E-05 45.9 14.0 154 155-350 221-391 (461)
50 KOG0291|consensus 92.7 23 0.0005 40.8 23.5 244 116-421 335-614 (893)
51 PRK05137 tolB translocation pr 92.6 16 0.00036 39.0 24.5 29 199-227 213-242 (435)
52 COG5276 Uncharacterized conser 92.4 1.5 3.2E-05 45.4 11.3 79 183-305 86-164 (370)
53 PRK04043 tolB translocation pr 91.9 21 0.00045 38.5 21.7 31 197-227 286-317 (419)
54 TIGR03300 assembly_YfgL outer 91.9 9.2 0.0002 39.7 17.1 53 157-226 252-305 (377)
55 PRK04792 tolB translocation pr 91.8 22 0.00047 38.5 24.7 105 154-305 240-346 (448)
56 PRK03629 tolB translocation pr 91.6 21 0.00046 38.3 19.8 60 156-227 267-327 (429)
57 TIGR03606 non_repeat_PQQ dehyd 91.5 13 0.00029 40.7 18.2 45 124-176 27-71 (454)
58 PF13360 PQQ_2: PQQ-like domai 91.4 13 0.00028 35.2 27.1 196 136-421 35-232 (238)
59 PRK04792 tolB translocation pr 91.4 24 0.00052 38.2 25.0 73 199-306 229-303 (448)
60 PF07995 GSDH: Glucose / Sorbo 90.4 4.3 9.3E-05 42.2 12.8 127 328-459 48-201 (331)
61 PRK11138 outer membrane biogen 90.2 15 0.00032 38.7 16.8 54 156-226 266-320 (394)
62 TIGR03032 conserved hypothetic 90.1 1.3 2.9E-05 46.1 8.4 44 124-176 200-243 (335)
63 cd00200 WD40 WD40 domain, foun 89.7 17 0.00036 33.6 25.9 195 129-421 12-209 (289)
64 KOG4499|consensus 89.6 1.1 2.4E-05 45.0 7.1 77 376-457 147-229 (310)
65 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.3 41 0.00088 37.5 23.1 186 200-422 69-282 (527)
66 PF07995 GSDH: Glucose / Sorbo 89.0 1.4 3E-05 45.8 7.9 134 333-483 6-156 (331)
67 COG3204 Uncharacterized protei 88.8 31 0.00067 35.8 17.0 122 328-464 180-310 (316)
68 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.8 44 0.00095 37.2 28.3 145 137-305 120-288 (527)
69 PRK04043 tolB translocation pr 88.7 38 0.00083 36.5 23.0 104 155-306 212-318 (419)
70 TIGR03606 non_repeat_PQQ dehyd 88.5 14 0.0003 40.5 15.3 120 328-457 78-247 (454)
71 KOG1214|consensus 87.9 2.6 5.6E-05 48.7 9.4 124 331-480 1027-1152(1289)
72 TIGR03300 assembly_YfgL outer 87.3 16 0.00035 37.8 14.6 66 137-226 65-131 (377)
73 PF01436 NHL: NHL repeat; Int 87.1 0.96 2.1E-05 29.9 3.5 26 390-416 3-28 (28)
74 smart00135 LY Low-density lipo 86.9 1.4 3.1E-05 30.5 4.6 32 389-420 9-40 (43)
75 KOG0268|consensus 86.8 41 0.00089 35.9 16.7 254 154-483 87-347 (433)
76 PF01436 NHL: NHL repeat; Int 86.2 1.8 3.8E-05 28.6 4.4 23 126-148 1-23 (28)
77 PF05787 DUF839: Bacterial pro 85.0 2.4 5.2E-05 47.2 7.3 72 389-460 350-456 (524)
78 cd00216 PQQ_DH Dehydrogenases 84.6 67 0.0014 35.2 27.6 66 156-226 175-272 (488)
79 COG4946 Uncharacterized protei 83.8 41 0.00089 37.1 15.4 104 157-308 383-488 (668)
80 KOG1539|consensus 82.5 23 0.0005 41.2 13.6 163 262-478 494-669 (910)
81 PRK01742 tolB translocation pr 80.5 86 0.0019 33.5 23.0 28 199-226 215-243 (429)
82 PRK01029 tolB translocation pr 80.2 91 0.002 33.6 24.8 28 201-228 200-228 (428)
83 PRK00178 tolB translocation pr 79.2 90 0.002 33.0 26.1 72 199-305 254-327 (430)
84 PRK02889 tolB translocation pr 79.1 95 0.0021 33.2 20.1 74 198-306 294-369 (427)
85 KOG4659|consensus 77.7 5.1 0.00011 48.4 6.7 69 389-459 407-494 (1899)
86 KOG0316|consensus 77.2 88 0.0019 31.8 16.1 180 156-414 81-262 (307)
87 COG0823 TolB Periplasmic compo 76.8 1.1E+02 0.0024 33.3 16.3 105 156-307 218-324 (425)
88 PF06739 SBBP: Beta-propeller 76.4 2.9 6.3E-05 29.8 2.8 30 379-409 3-32 (38)
89 TIGR02800 propeller_TolB tol-p 76.0 1E+02 0.0023 32.0 24.2 135 156-361 214-352 (417)
90 TIGR02800 propeller_TolB tol-p 74.8 1.1E+02 0.0024 31.8 24.6 28 199-226 201-229 (417)
91 TIGR02276 beta_rpt_yvtn 40-res 74.5 16 0.00035 25.2 6.4 32 137-176 3-34 (42)
92 TIGR03118 PEPCTERM_chp_1 conse 74.4 1.2E+02 0.0026 31.9 24.0 44 378-421 233-281 (336)
93 TIGR02276 beta_rpt_yvtn 40-res 74.2 5.5 0.00012 27.7 3.9 25 199-223 2-26 (42)
94 PRK02889 tolB translocation pr 72.6 1.4E+02 0.003 31.9 25.2 61 155-227 219-280 (427)
95 KOG0646|consensus 71.6 1.6E+02 0.0035 32.3 20.6 274 53-420 10-308 (476)
96 smart00135 LY Low-density lipo 70.8 12 0.00026 25.7 5.0 35 182-221 7-41 (43)
97 cd00216 PQQ_DH Dehydrogenases 70.1 1.7E+02 0.0038 32.0 24.7 73 137-226 110-191 (488)
98 PF02191 OLF: Olfactomedin-lik 70.0 98 0.0021 31.2 13.1 133 64-226 70-210 (250)
99 PRK03629 tolB translocation pr 69.6 1.6E+02 0.0036 31.5 25.4 72 199-305 254-327 (429)
100 KOG0322|consensus 69.5 60 0.0013 33.4 11.2 84 126-221 150-237 (323)
101 KOG2055|consensus 69.4 1.8E+02 0.0038 32.2 15.2 125 157-299 238-376 (514)
102 PF13449 Phytase-like: Esteras 69.2 94 0.002 32.1 13.2 63 278-350 95-164 (326)
103 KOG0315|consensus 68.8 1.4E+02 0.0031 30.5 21.9 225 128-456 42-275 (311)
104 COG0823 TolB Periplasmic compo 68.5 1.8E+02 0.0039 31.6 18.7 31 197-227 291-322 (425)
105 KOG0265|consensus 67.5 57 0.0012 34.0 10.7 54 157-223 113-167 (338)
106 KOG0279|consensus 67.4 1.6E+02 0.0035 30.5 18.2 211 157-418 86-312 (315)
107 KOG0286|consensus 66.2 1.4E+02 0.0031 31.1 13.2 127 154-350 164-291 (343)
108 PF05096 Glu_cyclase_2: Glutam 65.7 75 0.0016 32.5 11.2 119 60-226 87-210 (264)
109 PTZ00420 coronin; Provisional 65.1 2.5E+02 0.0053 31.9 18.4 27 278-304 274-300 (568)
110 KOG0263|consensus 64.3 2.7E+02 0.0058 32.4 16.1 101 281-420 548-650 (707)
111 PF07433 DUF1513: Protein of u 62.6 1.6E+02 0.0035 30.8 13.1 136 129-301 101-251 (305)
112 COG3211 PhoX Predicted phospha 61.8 23 0.0005 39.7 7.2 67 390-459 418-519 (616)
113 smart00284 OLF Olfactomedin-li 59.7 2.1E+02 0.0045 29.2 18.0 157 41-225 51-214 (255)
114 COG4946 Uncharacterized protei 58.1 3.1E+02 0.0067 30.7 16.7 69 283-355 376-466 (668)
115 COG3490 Uncharacterized protei 57.8 73 0.0016 33.3 9.4 137 134-303 169-316 (366)
116 COG5276 Uncharacterized conser 56.5 2.6E+02 0.0057 29.4 16.3 29 199-228 137-165 (370)
117 PF01731 Arylesterase: Arylest 56.2 19 0.00042 30.4 4.3 50 157-221 37-86 (86)
118 COG3670 Lignostilbene-alpha,be 56.0 1.8E+02 0.004 32.1 12.6 127 75-226 261-414 (490)
119 PF06433 Me-amine-dh_H: Methyl 56.0 38 0.00082 35.8 7.3 92 57-173 234-329 (342)
120 PF13449 Phytase-like: Esteras 55.8 70 0.0015 33.1 9.3 62 128-192 86-155 (326)
121 PF00930 DPPIV_N: Dipeptidyl p 55.5 2.6E+02 0.0056 29.0 13.9 64 277-363 247-315 (353)
122 PF05567 Neisseria_PilC: Neiss 55.1 27 0.00058 36.6 6.2 57 154-227 179-237 (335)
123 PF05096 Glu_cyclase_2: Glutam 55.0 2.5E+02 0.0055 28.7 19.4 212 64-361 46-259 (264)
124 PF07494 Reg_prop: Two compone 55.0 12 0.00026 23.9 2.2 17 127-143 5-21 (24)
125 COG2133 Glucose/sorbosone dehy 53.5 1.2E+02 0.0025 32.9 10.7 126 328-458 114-258 (399)
126 PF08309 LVIVD: LVIVD repeat; 53.2 22 0.00047 26.0 3.6 26 199-225 10-35 (42)
127 PRK01029 tolB translocation pr 53.0 1.1E+02 0.0025 32.9 10.7 29 278-306 199-228 (428)
128 PF06977 SdiA-regulated: SdiA- 50.9 2.8E+02 0.006 28.0 18.1 72 128-220 23-95 (248)
129 PF01456 Mucin: Mucin-like gly 50.8 10 0.00022 34.4 1.9 24 6-29 4-27 (143)
130 PF07433 DUF1513: Protein of u 50.2 3.2E+02 0.007 28.6 20.3 59 157-226 29-91 (305)
131 PF02191 OLF: Olfactomedin-lik 48.0 3.1E+02 0.0066 27.7 12.3 122 66-220 126-248 (250)
132 smart00284 OLF Olfactomedin-li 47.3 2.7E+02 0.0059 28.3 11.7 121 66-219 131-252 (255)
133 TIGR03032 conserved hypothetic 45.7 47 0.001 34.9 6.0 102 160-301 189-294 (335)
134 KOG0268|consensus 45.3 67 0.0014 34.4 7.0 94 152-297 163-259 (433)
135 KOG0282|consensus 44.8 3.9E+02 0.0085 29.6 12.8 54 157-223 281-334 (503)
136 PF11134 Phage_stabilise: Phag 44.8 83 0.0018 34.4 7.8 33 199-231 241-273 (469)
137 PF14583 Pectate_lyase22: Olig 44.7 1E+02 0.0022 33.2 8.6 67 278-368 48-115 (386)
138 PF01731 Arylesterase: Arylest 44.1 38 0.00082 28.7 4.2 33 262-299 54-86 (86)
139 PF00058 Ldl_recept_b: Low-den 41.8 94 0.002 22.3 5.5 25 201-226 1-26 (42)
140 KOG0318|consensus 40.3 5.9E+02 0.013 28.7 15.8 176 157-366 82-270 (603)
141 PF02333 Phytase: Phytase; In 39.9 2.9E+02 0.0062 29.8 11.0 36 187-222 257-293 (381)
142 KOG0310|consensus 39.1 4.5E+02 0.0097 29.2 12.2 49 282-354 253-301 (487)
143 KOG0643|consensus 39.0 4.7E+02 0.01 27.2 13.4 81 136-228 51-137 (327)
144 KOG0306|consensus 37.3 7.6E+02 0.016 29.2 19.4 79 323-421 503-582 (888)
145 PF01011 PQQ: PQQ enzyme repea 35.5 1.4E+02 0.003 20.7 5.5 20 157-176 11-30 (38)
146 KOG2055|consensus 35.4 4.7E+02 0.01 29.0 11.6 56 157-226 326-381 (514)
147 KOG1274|consensus 34.2 2.7E+02 0.0059 33.1 10.2 133 129-320 141-287 (933)
148 PRK01742 tolB translocation pr 33.8 6.1E+02 0.013 27.0 22.5 61 155-227 227-288 (429)
149 PRK02888 nitrous-oxide reducta 33.0 8.2E+02 0.018 28.3 13.8 147 277-440 331-479 (635)
150 KOG0291|consensus 32.6 9E+02 0.02 28.6 23.7 35 388-422 435-469 (893)
151 KOG2110|consensus 31.6 6.9E+02 0.015 26.9 14.7 80 127-225 88-167 (391)
152 KOG0282|consensus 30.0 3E+02 0.0065 30.5 9.2 56 157-226 323-379 (503)
153 KOG1446|consensus 28.3 7.2E+02 0.016 26.1 19.9 182 157-421 81-264 (311)
154 COG2133 Glucose/sorbosone dehy 27.9 4.9E+02 0.011 28.3 10.4 55 401-459 332-386 (399)
155 KOG0647|consensus 27.3 93 0.002 32.5 4.6 81 127-223 85-188 (347)
156 PF13570 PQQ_3: PQQ-like domai 26.5 2.2E+02 0.0048 19.6 5.6 21 199-220 20-40 (40)
157 KOG0286|consensus 25.7 8E+02 0.017 25.8 23.3 52 391-451 276-327 (343)
158 KOG0292|consensus 25.0 1.3E+03 0.028 28.0 16.2 76 128-226 53-130 (1202)
159 KOG0294|consensus 23.5 9E+02 0.019 25.7 10.9 78 377-464 115-195 (362)
160 PLN03215 ascorbic acid mannose 23.1 3.2E+02 0.0069 29.4 7.9 66 157-226 287-353 (373)
161 KOG0641|consensus 23.1 8.1E+02 0.017 24.9 15.4 65 282-362 197-262 (350)
162 KOG3037|consensus 23.0 1.7E+02 0.0037 30.7 5.6 56 391-456 26-87 (330)
163 PF15416 DUF4623: Domain of un 22.9 9.7E+02 0.021 25.8 11.1 30 391-420 242-272 (442)
164 KOG3848|consensus 22.0 1.7E+02 0.0038 31.8 5.6 76 155-242 133-236 (516)
165 PF14298 DUF4374: Domain of un 21.4 2.3E+02 0.0049 31.1 6.5 75 400-481 232-316 (435)
166 PF01690 PLRV_ORF5: Potato lea 20.7 2.2E+02 0.0047 31.5 6.1 53 289-343 125-194 (465)
167 PF14298 DUF4374: Domain of un 20.6 1.2E+03 0.025 25.8 12.1 94 129-228 277-384 (435)
168 smart00564 PQQ beta-propeller 20.2 2.6E+02 0.0055 18.0 4.4 15 157-171 17-31 (33)
No 1
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=100.00 E-value=2.5e-72 Score=567.22 Aligned_cols=280 Identities=40% Similarity=0.760 Sum_probs=231.4
Q ss_pred eEEeeEEEcCCCeEEEEeCCCCCC----CCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcE
Q psy731 127 TSVVKVQSDPCDRLWALDSGVVEG----KMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAF 202 (494)
Q Consensus 127 vsV~~i~iD~~~~LwvlD~G~~~~----~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~ 202 (494)
+||++++||+|+||||||+|..+. .+.|+|||++|||+|++++|+|.||+
T Consensus 1 ~sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~-------------------------- 54 (287)
T PF03022_consen 1 VSVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPP-------------------------- 54 (287)
T ss_dssp S-EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--C--------------------------
T ss_pred CcccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECCh--------------------------
Confidence 699999999999999999999872 24999999999999999999999999
Q ss_pred EEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731 203 LYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY 282 (494)
Q Consensus 203 vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y 282 (494)
+++++.++|++|+||.+..+|+++|||
T Consensus 55 -----------------------------------------------------~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 55 -----------------------------------------------------DIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -----------------------------------------------------CCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred -----------------------------------------------------HHcccccccceEEEEccCCCCcceEEE
Confidence 334455566666666666679999999
Q ss_pred EecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731 283 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT 362 (494)
Q Consensus 283 I~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T 362 (494)
|+|++.+||||||++++++||++|++|+++|.++.|+++|+.|+|++|++||||+|...+| |+||||||+|+++|+|+|
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSSRKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT-SEEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCCCcEEEEEH
Confidence 9999999999999999999999999999999999999999999999999999999977777 999999999999999999
Q ss_pred hhhcCCCcCccc-cccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEec
Q psy731 363 KVLQNRSLDFSR-SNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIY 441 (494)
Q Consensus 363 ~~L~~~~~~~~~-~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~ 441 (494)
++|+|+++...+ +.+.|+.+|+|| +|++||++| ++|+|||++++++||+|||+++ +|.++|+++|++|+++|+|
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~k~--~~s~g~~~D-~~G~ly~~~~~~~aI~~w~~~~--~~~~~~~~~l~~d~~~l~~ 235 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGDKG--SQSDGMAID-PNGNLYFTDVEQNAIGCWDPDG--PYTPENFEILAQDPRTLQW 235 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE-----SECEEEEE-TTTEEEEEECCCTEEEEEETTT--SB-GCCEEEEEE-CC-GSS
T ss_pred HHhhCccccccccccccceeccccC--CCCceEEEC-CCCcEEEecCCCCeEEEEeCCC--CcCccchheeEEcCceeec
Confidence 999999986655 678999999996 789999999 8999999999999999999999 9999999999999777999
Q ss_pred ccceEEcC--CceEEEEecCchhhhcCCCCCCcccEEEEEEechhhhcCCCC
Q psy731 442 PSDIRVDR--TGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVC 491 (494)
Q Consensus 442 pd~~~id~--~g~Lwvlsnrl~~~~~~~~~~~~~nfrI~r~~~~~~i~~t~C 491 (494)
||++++++ +|+|||++||||++.+++++.+|+|||||+++++++|+||+|
T Consensus 236 pd~~~i~~~~~g~L~v~snrl~~~~~~~~~~~e~nfri~~~~v~~~~~~t~C 287 (287)
T PF03022_consen 236 PDGLKIDPEGDGYLWVLSNRLQRFAYGNLNPDEVNFRIWRARVDELIKGTVC 287 (287)
T ss_dssp EEEEEE-T--TS-EEEEE-S--SSTGGG---SS-SEEEEES-HHHHHTTSTT
T ss_pred cceeeeccccCceEEEEECcchHhhccCCCCCccEEeEEEeCHHHHhcCCCC
Confidence 99999999 999999999999999999999999999999999999999999
No 2
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.70 E-value=9.2e-16 Score=155.54 Aligned_cols=213 Identities=23% Similarity=0.331 Sum_probs=138.8
Q ss_pred CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEE
Q psy731 136 PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVV 215 (494)
Q Consensus 136 ~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIV 215 (494)
+.++|+++|+.+.. .+..|.++.+.+. ++|+|+|++||.++.+|.++||||||++.+||||
T Consensus 32 ~~pKLv~~Dl~t~~-------li~~~~~p~~~~~------------~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV 92 (287)
T PF03022_consen 32 CPPKLVAFDLKTNQ-------LIRRYPFPPDIAP------------PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIV 92 (287)
T ss_dssp S--EEEEEETTTTC-------EEEEEE--CCCS-------------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEE
T ss_pred CCcEEEEEECCCCc-------EEEEEECChHHcc------------cccccceEEEEccCCCCcceEEEEeCCCcCcEEE
Confidence 45799999999982 6788899877653 5799999999998889999999999999999999
Q ss_pred EEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEE
Q psy731 216 YNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYN 295 (494)
Q Consensus 216 yd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVyd 295 (494)
||+++|++|||.|+++++||.++.|+++|+. |++++ +..+|+.... .-++..+|.. .
T Consensus 93 ~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~---~~~~d--------g~~gial~~~--~~d~r~LYf~----------~ 149 (287)
T PF03022_consen 93 YDLATGKSWRVLHNSFSPDPDAGPFTIGGES---FQWPD--------GIFGIALSPI--SPDGRWLYFH----------P 149 (287)
T ss_dssp EETTTTEEEEEETCGCTTS-SSEEEEETTEE---EEETT--------SEEEEEE-TT--STTS-EEEEE----------E
T ss_pred EEccCCcEEEEecCCcceeccccceeccCce---EecCC--------CccccccCCC--CCCccEEEEE----------e
Confidence 9999999999999999999999999999876 77654 1344444321 1123555554 4
Q ss_pred cCCCcEEEEecCCcccCCCC------cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCC
Q psy731 296 YRTNDSHIIHHNYLHFDPLF------GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRS 369 (494)
Q Consensus 296 l~~~~swrv~~~~~~~dP~~------~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~ 369 (494)
+.+.+..|+....+.-.... ..+..=|..- ....|++.++. ..|||.-+....++...+.- .
T Consensus 150 lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~---~~s~g~~~D~~-----G~ly~~~~~~~aI~~w~~~~----~ 217 (287)
T PF03022_consen 150 LSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG---SQSDGMAIDPN-----GNLYFTDVEQNAIGCWDPDG----P 217 (287)
T ss_dssp TT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECEEEEETT-----TEEEEEECCCTEEEEEETTT----S
T ss_pred CCCCcEEEEEHHHhhCccccccccccccceeccccC---CCCceEEECCC-----CcEEEecCCCCeEEEEeCCC----C
Confidence 55566677754333211111 1122212211 23678999864 49999999999999887742 1
Q ss_pred cCccccccceEEecccCC-CCCCCeEEeeCC--CCeEEEec
Q psy731 370 LDFSRSNFDFKVMGSRGT-GSQSGASSLDEE--TGVIFYAL 407 (494)
Q Consensus 370 ~~~~~~~~~v~~~G~~G~-~~qs~g~~~D~~--~G~ly~~~ 407 (494)
+.. +.++.+-.-.. ..-.+++.+| . +|.||+.-
T Consensus 218 ~~~----~~~~~l~~d~~~l~~pd~~~i~-~~~~g~L~v~s 253 (287)
T PF03022_consen 218 YTP----ENFEILAQDPRTLQWPDGLKID-PEGDGYLWVLS 253 (287)
T ss_dssp B-G----CCEEEEEE-CC-GSSEEEEEE--T--TS-EEEEE
T ss_pred cCc----cchheeEEcCceeeccceeeec-cccCceEEEEE
Confidence 111 23333432211 2457899999 7 89998854
No 3
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.44 E-value=1.1e-10 Score=114.35 Aligned_cols=232 Identities=16% Similarity=0.153 Sum_probs=150.2
Q ss_pred eeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731 130 VKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS 208 (494)
Q Consensus 130 ~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs 208 (494)
.++..|+ .++||++|.... +|+++|+.+++... +.+|. .+.++++. .++.+||++.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~--------~i~~~~~~~~~~~~-~~~~~---------~~G~~~~~-----~~g~l~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGG--------RIYRVDPDTGEVEV-IDLPG---------PNGMAFDR-----PDGRLYVADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTT--------EEEEEETTTTEEEE-EESSS---------EEEEEEEC-----TTSEEEEEET
T ss_pred cceEEECCCCEEEEEEcCCC--------EEEEEECCCCeEEE-EecCC---------CceEEEEc-----cCCEEEEEEc
Confidence 3567785 999999999887 89999999987643 55444 56677763 4689999997
Q ss_pred CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731 209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH 288 (494)
Q Consensus 209 ~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~ 288 (494)
. ++.++|+.+++...+...+. ...+...++++++|. ++-+|++|...
T Consensus 60 ~--~~~~~d~~~g~~~~~~~~~~-------------------------~~~~~~~~ND~~vd~------~G~ly~t~~~~ 106 (246)
T PF08450_consen 60 G--GIAVVDPDTGKVTVLADLPD-------------------------GGVPFNRPNDVAVDP------DGNLYVTDSGG 106 (246)
T ss_dssp T--CEEEEETTTTEEEEEEEEET-------------------------TCSCTEEEEEEEE-T------TS-EEEEEECC
T ss_pred C--ceEEEecCCCcEEEEeeccC-------------------------CCcccCCCceEEEcC------CCCEEEEecCC
Confidence 4 45566999997766632110 011345689999984 45599999864
Q ss_pred --------CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEee
Q psy731 289 --------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAV 360 (494)
Q Consensus 289 --------~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V 360 (494)
.+|+.++.. ++...+... ....+||++||+ ++.||+.-....++++.
T Consensus 107 ~~~~~~~~g~v~~~~~~-~~~~~~~~~--------------------~~~pNGi~~s~d----g~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPD-GKVTVVADG--------------------LGFPNGIAFSPD----GKTLYVADSFNGRIWRF 161 (246)
T ss_dssp BCTTCGGSEEEEEEETT-SEEEEEEEE--------------------ESSEEEEEEETT----SSEEEEEETTTTEEEEE
T ss_pred CccccccccceEEECCC-CeEEEEecC--------------------cccccceEECCc----chheeecccccceeEEE
Confidence 235556555 332221111 123688999997 47999977666688888
Q ss_pred echhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeE
Q psy731 361 TTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATL 439 (494)
Q Consensus 361 ~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l 439 (494)
+...=.. . + ...+.+.+ .+..+..+|+++| ++|+||.+....+.|.++|+++ .+ ...+.. + .
T Consensus 162 ~~~~~~~-~-----~-~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~G--~~----~~~i~~-p--~ 224 (246)
T PF08450_consen 162 DLDADGG-E-----L-SNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPDG--KL----LREIEL-P--V 224 (246)
T ss_dssp EEETTTC-C-----E-EEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETTS--CE----EEEEE--S--S
T ss_pred ecccccc-c-----e-eeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCCc--cE----EEEEcC-C--C
Confidence 6532100 0 0 11122221 1112347999999 8999999999999999999997 32 233433 2 2
Q ss_pred ecccceEEc-C-CceEEEEecC
Q psy731 440 IYPSDIRVD-R-TGVLWVLSNK 459 (494)
Q Consensus 440 ~~pd~~~id-~-~g~Lwvlsnr 459 (494)
..|+.+.+. + .+.|||++.|
T Consensus 225 ~~~t~~~fgg~~~~~L~vTta~ 246 (246)
T PF08450_consen 225 PRPTNCAFGGPDGKTLYVTTAR 246 (246)
T ss_dssp SSEEEEEEESTTSSEEEEEEB-
T ss_pred CCEEEEEEECCCCCEEEEEeCC
Confidence 378999994 3 3589999865
No 4
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=2.9e-08 Score=116.75 Aligned_cols=285 Identities=18% Similarity=0.156 Sum_probs=169.0
Q ss_pred CCceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEc-CCCcc------ccccCCccceEEEeec
Q psy731 124 RNLTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQL-KEKTD------YTEESKFSNMVVDVTS 195 (494)
Q Consensus 124 ~~lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~l-p~~~~------~~~~S~l~d~vVD~~~ 195 (494)
+.|....++.+|. .++|||.|.+.. +|+++|+. ++++..+.- .+.-. ...-.....+++|.
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~--------rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-- 633 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHN--------RIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-- 633 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCC--------eEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--
Confidence 4567777899996 588999999988 89999985 455544432 11000 00112346777874
Q ss_pred CCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCC
Q psy731 196 ANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSAN 275 (494)
Q Consensus 196 ~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~ 275 (494)
.++.+||+|..++.|-++|+.++....+...-.. .++..|... ..........++++|.
T Consensus 634 ---~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~------g~~~~gg~~--------~~~~~ln~P~gVa~dp---- 692 (1057)
T PLN02919 634 ---KKNLLYVADTENHALREIDFVNETVRTLAGNGTK------GSDYQGGKK--------GTSQVLNSPWDVCFEP---- 692 (1057)
T ss_pred ---CCCEEEEEeCCCceEEEEecCCCEEEEEeccCcc------cCCCCCChh--------hhHhhcCCCeEEEEec----
Confidence 4677999999999999999999988777221100 001111100 0000012245678874
Q ss_pred CCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc
Q psy731 276 CDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST 355 (494)
Q Consensus 276 c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~ 355 (494)
+++.+||+|.+.+.|.+||..++....+.-..... ...+.. .....|. +-.||+++|+ +++||+.--.+.
T Consensus 693 -~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~-~~~g~~-~~~~~~~---~P~GIavspd----G~~LYVADs~n~ 762 (1057)
T PLN02919 693 -VNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER-NLNGSS-GTSTSFA---QPSGISLSPD----LKELYIADSESS 762 (1057)
T ss_pred -CCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc-cCCCCc-ccccccc---CccEEEEeCC----CCEEEEEECCCC
Confidence 35789999999999999999888765543221000 000000 0001122 3456999987 368999766666
Q ss_pred ceEeeechhhcCCCcCccc--cccceEEeccc-C-----CCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCcccccc
Q psy731 356 TEFAVTTKVLQNRSLDFSR--SNFDFKVMGSR-G-----TGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEK 427 (494)
Q Consensus 356 ~ly~V~T~~L~~~~~~~~~--~~~~v~~~G~~-G-----~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~ 427 (494)
++..++.+--......... ........|+. | ......|+++| .+|+||+++...+.|..||++++.
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~tg~----- 836 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPATKR----- 836 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe-CCCcEEEEECCCCEEEEEECCCCe-----
Confidence 6666654311000000000 00001112221 1 11235699999 899999999999999999998731
Q ss_pred ceeeeee-----------cCCeEecccceEEcCCceEEEEe
Q psy731 428 SMGLVAE-----------DNATLIYPSDIRVDRTGVLWVLS 457 (494)
Q Consensus 428 ~~~~v~~-----------d~~~l~~pd~~~id~~g~Lwvls 457 (494)
+..++. ....|..|.++.++++|.|||..
T Consensus 837 -v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 837 -VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred -EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 122221 12456789999999999999984
No 5
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=1.3e-06 Score=89.91 Aligned_cols=238 Identities=15% Similarity=0.136 Sum_probs=138.7
Q ss_pred EcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeE
Q psy731 134 SDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHI 213 (494)
Q Consensus 134 iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~i 213 (494)
.++.+.||.+|.... +|++||+.+++.. .+..|. .+-+-..+| ..+.+..++.+.
T Consensus 33 ~~~~~~L~w~DI~~~--------~i~r~~~~~g~~~-~~~~p~-------~~~~~~~~d------~~g~Lv~~~~g~--- 87 (307)
T COG3386 33 DPDRGALLWVDILGG--------RIHRLDPETGKKR-VFPSPG-------GFSSGALID------AGGRLIACEHGV--- 87 (307)
T ss_pred cCCCCEEEEEeCCCC--------eEEEecCCcCceE-EEECCC-------Ccccceeec------CCCeEEEEcccc---
Confidence 345677999999887 8999999977653 466666 111222233 344555555543
Q ss_pred EEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEE
Q psy731 214 VVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVV 293 (494)
Q Consensus 214 IVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliV 293 (494)
..+|.+++..++... +.+.-.+...+|+..||. ++.+|++|...
T Consensus 88 ~~~~~~~~~~~t~~~-------------------------~~~~~~~~~r~ND~~v~p------dG~~wfgt~~~----- 131 (307)
T COG3386 88 RLLDPDTGGKITLLA-------------------------EPEDGLPLNRPNDGVVDP------DGRIWFGDMGY----- 131 (307)
T ss_pred EEEeccCCceeEEec-------------------------cccCCCCcCCCCceeEcC------CCCEEEeCCCc-----
Confidence 333445555543311 112233447789999984 36789998773
Q ss_pred EEcCCCcEEEEecCC-cccCCCCcceEEcCEEeeee----cceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCC
Q psy731 294 YNYRTNDSHIIHHNY-LHFDPLFGDFTIGGVNFQWQ----TGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNR 368 (494)
Q Consensus 294 ydl~~~~swrv~~~~-~~~dP~~~~~~v~G~~f~~~----~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~ 368 (494)
++ .++++.-...+ .+.+|. |....+. .-.+|||+||+ +++|||.--...++++++... .+.
T Consensus 132 ~~--~~~~~~~~~G~lyr~~p~-------g~~~~l~~~~~~~~NGla~SpD----g~tly~aDT~~~~i~r~~~d~-~~g 197 (307)
T COG3386 132 FD--LGKSEERPTGSLYRVDPD-------GGVVRLLDDDLTIPNGLAFSPD----GKTLYVADTPANRIHRYDLDP-ATG 197 (307)
T ss_pred cc--cCccccCCcceEEEEcCC-------CCEEEeecCcEEecCceEECCC----CCEEEEEeCCCCeEEEEecCc-ccC
Confidence 11 11111111110 111221 1111111 12688999998 479999888778999998765 222
Q ss_pred CcCccccccceEEec-ccCCCCCCCeEEeeCCCCeEEEeccCC-CeEEEEeCCCCccccccceeeeeecCCeEecccceE
Q psy731 369 SLDFSRSNFDFKVMG-SRGTGSQSGASSLDEETGVIFYALLVK-SGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIR 446 (494)
Q Consensus 369 ~~~~~~~~~~v~~~G-~~G~~~qs~g~~~D~~~G~ly~~~~~~-~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~ 446 (494)
.... - ..+.... ++ +..+|+++| ++|+||.+.... .+|.+|+|++ +. .+.+ .- +. .+|+...
T Consensus 198 ~~~~--~-~~~~~~~~~~---G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG--~l----~~~i-~l-P~-~~~t~~~ 261 (307)
T COG3386 198 PIGG--R-RGFVDFDEEP---GLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDG--KL----LGEI-KL-PV-KRPTNPA 261 (307)
T ss_pred ccCC--c-ceEEEccCCC---CCCCceEEe-CCCCEEEecccCCceEEEECCCC--cE----EEEE-EC-CC-CCCccce
Confidence 2111 1 1122222 23 568999999 999999655544 5999999996 32 2332 22 22 6888888
Q ss_pred EcCC--ceEEEEecCchh
Q psy731 447 VDRT--GVLWVLSNKLPV 462 (494)
Q Consensus 447 id~~--g~Lwvlsnrl~~ 462 (494)
+... ..|||++++...
T Consensus 262 FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 262 FGGPDLNTLYITSARSGM 279 (307)
T ss_pred EeCCCcCEEEEEecCCCC
Confidence 8543 489999987754
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=2.4e-07 Score=90.75 Aligned_cols=190 Identities=17% Similarity=0.203 Sum_probs=122.7
Q ss_pred CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD 278 (494)
Q Consensus 199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~ 278 (494)
.++.+|++|...+.|+.||..++....+.- + ..++++++. .+
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------------------------------~--~~~G~~~~~-----~~ 51 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------------------------------P--GPNGMAFDR-----PD 51 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEES-------------------------------S--SEEEEEEEC-----TT
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEEEEec-------------------------------C--CCceEEEEc-----cC
Confidence 478899999999999999999988765511 0 156777773 34
Q ss_pred cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc---
Q psy731 279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST--- 355 (494)
Q Consensus 279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~--- 355 (494)
+-+|+++. .++.++|.++++.-.+.+......+ ..+.+.++++|+ | .|||.-+...
T Consensus 52 g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~~--------------~~~~ND~~vd~~---G--~ly~t~~~~~~~~ 110 (246)
T PF08450_consen 52 GRLYVADS--GGIAVVDPDTGKVTVLADLPDGGVP--------------FNRPNDVAVDPD---G--NLYVTDSGGGGAS 110 (246)
T ss_dssp SEEEEEET--TCEEEEETTTTEEEEEEEEETTCSC--------------TEEEEEEEE-TT---S---EEEEEECCBCTT
T ss_pred CEEEEEEc--CceEEEecCCCcEEEEeeccCCCcc--------------cCCCceEEEcCC---C--CEEEEecCCCccc
Confidence 78899984 6677779998865444433111111 123567899876 3 5999766553
Q ss_pred -----ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCcccccccee
Q psy731 356 -----TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMG 430 (494)
Q Consensus 356 -----~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~ 430 (494)
.+|++... - .++.+.+. ...+.|+++++....||+++...+.|.+++.+.... ...+.+
T Consensus 111 ~~~~g~v~~~~~~-~------------~~~~~~~~--~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~-~~~~~~ 174 (246)
T PF08450_consen 111 GIDPGSVYRIDPD-G------------KVTVVADG--LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG-ELSNRR 174 (246)
T ss_dssp CGGSEEEEEEETT-S------------EEEEEEEE--ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC-CEEEEE
T ss_pred cccccceEEECCC-C------------eEEEEecC--cccccceEECCcchheeecccccceeEEEecccccc-ceeeee
Confidence 36666543 1 13333332 244679999965558999999999999999863101 112334
Q ss_pred eeeecCCeEecccceEEcCCceEEEEe---cCchhh
Q psy731 431 LVAEDNATLIYPSDIRVDRTGVLWVLS---NKLPVF 463 (494)
Q Consensus 431 ~v~~d~~~l~~pd~~~id~~g~Lwvls---nrl~~~ 463 (494)
+++.-....-.|||+.+|.+|+|||.. +++.++
T Consensus 175 ~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 175 VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 554332333479999999999999994 555554
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.68 E-value=1.8e-06 Score=101.94 Aligned_cols=236 Identities=16% Similarity=0.132 Sum_probs=131.0
Q ss_pred CCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeeccccccccccc
Q psy731 184 SKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESK 263 (494)
Q Consensus 184 S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~ 263 (494)
++...++||. .++.+||+|++.+.|.|+|........+...-- ....-|.|+- ..-..
T Consensus 568 ~~P~gvavd~-----~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~-~G~~dG~~~~----------------a~f~~ 625 (1057)
T PLN02919 568 KFPGKLAIDL-----LNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE-EGLRDGSFED----------------ATFNR 625 (1057)
T ss_pred CCCceEEEEC-----CCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC-cCCCCCchhc----------------cccCC
Confidence 5556778874 578899999999999999987655544421000 0000011110 01123
Q ss_pred ceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcc-cCCCCcceEEcCEEeeeecceeeeeeccCCCC
Q psy731 264 FSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH-FDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRD 342 (494)
Q Consensus 264 ~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~-~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~ 342 (494)
..+|++|. ++..+||+|...+.|.++|+.++..-.+.-.... .+...+... ....+..+ .+|+++|+
T Consensus 626 P~GIavd~-----~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~-~~~~ln~P---~gVa~dp~--- 693 (1057)
T PLN02919 626 PQGLAYNA-----KKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKG-TSQVLNSP---WDVCFEPV--- 693 (1057)
T ss_pred CcEEEEeC-----CCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhh-hHhhcCCC---eEEEEecC---
Confidence 57788885 3567999999999999999998876666422111 000000000 00112222 35899885
Q ss_pred CceeEEEeeCCCcceEeeech--hhcCCCcCccccc-cceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCC
Q psy731 343 NFRVMYFHPLASTTEFAVTTK--VLQNRSLDFSRSN-FDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTF 419 (494)
Q Consensus 343 g~r~LYf~plss~~ly~V~T~--~L~~~~~~~~~~~-~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~ 419 (494)
+..||+.--...+++.+... .+. ........ ......+......+..|+++++..+.||+++...+.|.+||++
T Consensus 694 -~g~LyVad~~~~~I~v~d~~~g~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~ 770 (1057)
T PLN02919 694 -NEKVYIAMAGQHQIWEYNISDGVTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK 770 (1057)
T ss_pred -CCeEEEEECCCCeEEEEECCCCeEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 25888865555566555431 110 00000000 0000001111123567899995445699999999999999987
Q ss_pred CCccc--------cccceee------eeecCCeEecccceEEcCCceEEEEe
Q psy731 420 RGEEY--------NEKSMGL------VAEDNATLIYPSDIRVDRTGVLWVLS 457 (494)
Q Consensus 420 ~~~~~--------~~~~~~~------v~~d~~~l~~pd~~~id~~g~Lwvls 457 (494)
++... .+.+..- ... ...|..|.++.++++|.|||..
T Consensus 771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~-~~~l~~P~Gvavd~dG~LYVAD 821 (1057)
T PLN02919 771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGS-EVLLQHPLGVLCAKDGQIYVAD 821 (1057)
T ss_pred CCcEEEEEecccccCcccccccCCCCchh-hhhccCCceeeEeCCCcEEEEE
Confidence 63210 0000000 001 1357789999999999999984
No 8
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.37 E-value=0.00021 Score=74.17 Aligned_cols=274 Identities=17% Similarity=0.222 Sum_probs=156.4
Q ss_pred CCCeeeeeee--eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCC
Q psy731 61 ENCLPVSLDK--WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCD 138 (494)
Q Consensus 61 ~~~~p~gv~v--~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~ 138 (494)
.-.-|.-+++ .+.+||++-... +-..++........ ++.|++--. ... .=.+.-.+.+|+++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~--------~g~L~~~~~-----~~~-~g~~p~~i~~~~~g 98 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPD--------TGTLTLLNS-----VPS-GGSSPCHIAVDPDG 98 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETT--------TTEEEEEEE-----EEE-SSSCEEEEEECTTS
T ss_pred CCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCC--------cceeEEeee-----ecc-CCCCcEEEEEecCC
Confidence 3344555666 567888887654 22334444443221 133432111 000 11233446677665
Q ss_pred -eEEEEeCCCCCCCCCCCCEEEEEECCCC-cEEEEE---EcCC---CccccccCCccceEEEeecCCCCCcEEEEeeCCC
Q psy731 139 -RLWALDSGVVEGKMEQPPSVQVYDLRQQ-MQIRFF---QLKE---KTDYTEESKFSNMVVDVTSANCDNAFLYIADSGH 210 (494)
Q Consensus 139 -~LwvlD~G~~~~~~~~~Pklv~~dl~t~-~vi~~~---~lp~---~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~ 210 (494)
.|++..-+.. .+.+|++.++ ++.... ..+. ...-...++.-.+.++- ++.++|++|.+.
T Consensus 99 ~~l~vany~~g--------~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-----dg~~v~v~dlG~ 165 (345)
T PF10282_consen 99 RFLYVANYGGG--------SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-----DGRFVYVPDLGA 165 (345)
T ss_dssp SEEEEEETTTT--------EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-----TSSEEEEEETTT
T ss_pred CEEEEEEccCC--------eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-----CCCEEEEEecCC
Confidence 4777776665 7888888874 444432 1110 00012345556666653 689999999999
Q ss_pred CeEEEEEccCCc--eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731 211 NHIVVYNYRTND--SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH 288 (494)
Q Consensus 211 ~~iIVyd~~~~~--~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~ 288 (494)
+.|.+|+++.+. .-+... -.++.++..+.+++.. +..++|+.....
T Consensus 166 D~v~~~~~~~~~~~l~~~~~---------------------------~~~~~G~GPRh~~f~p-----dg~~~Yv~~e~s 213 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDS---------------------------IKVPPGSGPRHLAFSP-----DGKYAYVVNELS 213 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEE---------------------------EECSTTSSEEEEEE-T-----TSSEEEEEETTT
T ss_pred CEEEEEEEeCCCceEEEeec---------------------------cccccCCCCcEEEEcC-----CcCEEEEecCCC
Confidence 999999998876 433211 1245678888899875 478999999999
Q ss_pred CeEEEEEcC-CCcEEEEecC-CcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc--ceEeeechh
Q psy731 289 NHIVVYNYR-TNDSHIIHHN-YLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST--TEFAVTTKV 364 (494)
Q Consensus 289 ~gliVydl~-~~~swrv~~~-~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~--~ly~V~T~~ 364 (494)
+.|.||++. .+-.++.... ...+.. . .|. ...-+|+|||+ ++.||..-..+. ..|++..+
T Consensus 214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~-~-----~~~-----~~~~~i~ispd----g~~lyvsnr~~~sI~vf~~d~~- 277 (345)
T PF10282_consen 214 NTVSVFDYDPSDGSLTEIQTISTLPEG-F-----TGE-----NAPAEIAISPD----GRFLYVSNRGSNSISVFDLDPA- 277 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESCETT-S-----CSS-----SSEEEEEE-TT----SSEEEEEECTTTEEEEEEECTT-
T ss_pred CcEEEEeecccCCceeEEEEeeecccc-c-----ccc-----CCceeEEEecC----CCEEEEEeccCCEEEEEEEecC-
Confidence 999999999 2324444321 222110 0 011 24567999998 489999776654 45666321
Q ss_pred hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEE--eCCCC
Q psy731 365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCW--NTFRG 421 (494)
Q Consensus 365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w--~~~~~ 421 (494)
+..+ ..++.+-..| ....++++|+....||.+.-..+.|.+| |+++|
T Consensus 278 --~g~l------~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 278 --TGTL------TLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp --TTTE------EEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred --CCce------EEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 1111 1122222222 2357899995555799999999988877 45554
No 9
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.29 E-value=0.00048 Score=70.17 Aligned_cols=241 Identities=12% Similarity=0.110 Sum_probs=132.7
Q ss_pred eeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECC-CCcE--EEEEEcCCCccccccCCccceEEEeecCCCCCcEEEE
Q psy731 130 VKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLR-QQMQ--IRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYI 205 (494)
Q Consensus 130 ~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~-t~~v--i~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYI 205 (494)
..+.++++++ |+|...... .|..|++. ++++ +.++..+. ....++++ .++.++|+
T Consensus 38 ~~l~~spd~~~lyv~~~~~~--------~i~~~~~~~~g~l~~~~~~~~~~--------~p~~i~~~-----~~g~~l~v 96 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPEF--------RVLSYRIADDGALTFAAESPLPG--------SPTHISTD-----HQGRFLFS 96 (330)
T ss_pred ccEEECCCCCEEEEEECCCC--------cEEEEEECCCCceEEeeeecCCC--------CceEEEEC-----CCCCEEEE
Confidence 3456666654 677654322 57777775 4444 33332221 12345554 36789999
Q ss_pred eeCCCCeEEEEEccC-CceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731 206 ADSGHNHIVVYNYRT-NDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA 284 (494)
Q Consensus 206 tDs~~~~iIVyd~~~-~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~ 284 (494)
+..+.+.|.|||+.+ |...+... ..........++++ .+..++|++
T Consensus 97 ~~~~~~~v~v~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~~~~-----p~g~~l~v~ 143 (330)
T PRK11028 97 ASYNANCVSVSPLDKDGIPVAPIQ----------------------------IIEGLEGCHSANID-----PDNRTLWVP 143 (330)
T ss_pred EEcCCCeEEEEEECCCCCCCCcee----------------------------eccCCCcccEeEeC-----CCCCEEEEe
Confidence 999899999999964 32221100 00000112333443 256899999
Q ss_pred cCCCCeEEEEEcCCCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc--ceEeee
Q psy731 285 DSGHNHIVVYNYRTNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST--TEFAVT 361 (494)
Q Consensus 285 D~~~~gliVydl~~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~--~ly~V~ 361 (494)
+.+.+.|.|||++++....-.. ...... .-.|..+++++|+ ++.||..-..+. ..|.+.
T Consensus 144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~~--------------~g~~p~~~~~~pd----g~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 144 CLKEDRIRLFTLSDDGHLVAQEPAEVTTV--------------EGAGPRHMVFHPN----QQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred eCCCCEEEEEEECCCCcccccCCCceecC--------------CCCCCceEEECCC----CCEEEEEecCCCEEEEEEEe
Confidence 9999999999998643211000 000000 0124556999987 478998655333 445554
Q ss_pred ch--hhcCCCcCccccccceEEecc--cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCC
Q psy731 362 TK--VLQNRSLDFSRSNFDFKVMGS--RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNA 437 (494)
Q Consensus 362 T~--~L~~~~~~~~~~~~~v~~~G~--~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~ 437 (494)
.. .|+ ....+..+.. .|+ ....+++++|....||.+....+.|..|+.+... ....++..- .
T Consensus 206 ~~~~~~~--------~~~~~~~~p~~~~~~-~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~----~~~~~~~~~-~ 271 (330)
T PRK11028 206 DPHGEIE--------CVQTLDMMPADFSDT-RWAADIHITPDGRHLYACDRTASLISVFSVSEDG----SVLSFEGHQ-P 271 (330)
T ss_pred CCCCCEE--------EEEEEecCCCcCCCC-ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC----CeEEEeEEE-e
Confidence 21 110 0011111111 111 1233578886555799988888999999874310 112333332 2
Q ss_pred eEecccceEEcCCc-eEEEE
Q psy731 438 TLIYPSDIRVDRTG-VLWVL 456 (494)
Q Consensus 438 ~l~~pd~~~id~~g-~Lwvl 456 (494)
.-.+|.++.++++| +||+.
T Consensus 272 ~~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 272 TETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred ccccCCceEECCCCCEEEEE
Confidence 23689999999988 56664
No 10
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.28 E-value=0.0012 Score=64.13 Aligned_cols=210 Identities=14% Similarity=0.194 Sum_probs=116.4
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCC
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDP 235 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp 235 (494)
+|.+||+.+++.++.+.... ....+.++ +++..+|++....+.|.+||..+++..+. ..
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~--------~~~~l~~~-----~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------- 71 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQ--------RPRGITLS-----KDGKLLYVCASDSDTIQVIDLATGEVIGTLPS------- 71 (300)
T ss_pred EEEEEECCCCceEEEEECCC--------CCCceEEC-----CCCCEEEEEECCCCeEEEEECCCCcEEEeccC-------
Confidence 78889999998888776433 12345553 35678999998889999999998876443 10
Q ss_pred CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731 236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF 315 (494)
Q Consensus 236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~ 315 (494)
......+.++. ++.++|++...+..|.+||+.+.+..+....
T Consensus 72 -------------------------~~~~~~~~~~~-----~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-------- 113 (300)
T TIGR03866 72 -------------------------GPDPELFALHP-----NGKILYIANEDDNLVTVIDIETRKVLAEIPV-------- 113 (300)
T ss_pred -------------------------CCCccEEEECC-----CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--------
Confidence 00011223331 3467888876677899999987653221100
Q ss_pred cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEE
Q psy731 316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASS 395 (494)
Q Consensus 316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~ 395 (494)
.....+|+++|+ ++.+++....+...+.+..+ ... ..... ..+. ...+++
T Consensus 114 ------------~~~~~~~~~~~d----g~~l~~~~~~~~~~~~~d~~---~~~-----~~~~~-~~~~-----~~~~~~ 163 (300)
T TIGR03866 114 ------------GVEPEGMAVSPD----GKIVVNTSETTNMAHFIDTK---TYE-----IVDNV-LVDQ-----RPRFAE 163 (300)
T ss_pred ------------CCCcceEEECCC----CCEEEEEecCCCeEEEEeCC---CCe-----EEEEE-EcCC-----CccEEE
Confidence 011345888886 25666655433222222211 000 00000 1121 234678
Q ss_pred eeCCCC-eEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCce-EEEE
Q psy731 396 LDEETG-VIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGV-LWVL 456 (494)
Q Consensus 396 ~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~-Lwvl 456 (494)
++ .+| .||++.-..+.|..||..+++.........-... +.-.+|.++.++++|. +|+.
T Consensus 164 ~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 164 FT-ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred EC-CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEE
Confidence 88 455 5667766678899999987422110000000001 1124677888888774 5665
No 11
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.12 E-value=0.0025 Score=66.95 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=78.9
Q ss_pred CeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC---------
Q psy731 138 DRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS--------- 208 (494)
Q Consensus 138 ~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs--------- 208 (494)
.++||.|.+.... . -.+.++|..+++++.++.... .-+. ++ ..++.++||+.+
T Consensus 13 ~~v~V~d~~~~~~---~-~~v~ViD~~~~~v~g~i~~G~--------~P~~-~~-----spDg~~lyva~~~~~R~~~G~ 74 (352)
T TIGR02658 13 RRVYVLDPGHFAA---T-TQVYTIDGEAGRVLGMTDGGF--------LPNP-VV-----ASDGSFFAHASTVYSRIARGK 74 (352)
T ss_pred CEEEEECCccccc---C-ceEEEEECCCCEEEEEEEccC--------CCce-eE-----CCCCCEEEEEeccccccccCC
Confidence 4688999885210 0 279999999999999888654 1111 12 126899999999
Q ss_pred CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC-
Q psy731 209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG- 287 (494)
Q Consensus 209 ~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~- 287 (494)
..+.|-|||.++.+.-+= -++-++|++. .|.+.+.|.|+. ++.++|+++..
T Consensus 75 ~~d~V~v~D~~t~~~~~~--i~~p~~p~~~----~~~~~~~~~ls~----------------------dgk~l~V~n~~p 126 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIAD--IELPEGPRFL----VGTYPWMTSLTP----------------------DNKTLLFYQFSP 126 (352)
T ss_pred CCCEEEEEECccCcEEeE--EccCCCchhh----ccCccceEEECC----------------------CCCEEEEecCCC
Confidence 889999999999987533 1122333322 222223333321 46788888876
Q ss_pred CCeEEEEEcCCCcEEE
Q psy731 288 HNHIVVYNYRTNDSHI 303 (494)
Q Consensus 288 ~~gliVydl~~~~swr 303 (494)
.+.+-|+|+.+++.-+
T Consensus 127 ~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 127 SPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCEEEEEECCCCcEEE
Confidence 7788888888877655
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.12 E-value=0.001 Score=68.93 Aligned_cols=254 Identities=18% Similarity=0.297 Sum_probs=141.1
Q ss_pred eEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCC--cEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731 131 KVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQ--MQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD 207 (494)
Q Consensus 131 ~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~--~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD 207 (494)
-+.+|+ ..+||+.+-... ....|..|.+..+ ++...=..+. .....-.+.+|- ++.++|++.
T Consensus 41 ~l~~~~~~~~LY~~~e~~~-----~~g~v~~~~i~~~~g~L~~~~~~~~-----~g~~p~~i~~~~-----~g~~l~van 105 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSG-----DSGGVSSYRIDPDTGTLTLLNSVPS-----GGSSPCHIAVDP-----DGRFLYVAN 105 (345)
T ss_dssp CEEE-TTSSEEEEEETTSS-----TTTEEEEEEEETTTTEEEEEEEEEE-----SSSCEEEEEECT-----TSSEEEEEE
T ss_pred eEEEEeCCCEEEEEEcccc-----CCCCEEEEEECCCcceeEEeeeecc-----CCCCcEEEEEec-----CCCEEEEEE
Confidence 344554 568999987641 1236777766664 4433222221 333445566653 789999999
Q ss_pred CCCCeEEEEEccC-CceeEEec----CccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731 208 SGHNHIVVYNYRT-NDSHIIHH----NYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY 282 (494)
Q Consensus 208 s~~~~iIVyd~~~-~~~~rv~~----~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y 282 (494)
-+.+.+.||++.. |+.-...+ ....|+| .....+....+.++. ++.++|
T Consensus 106 y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~---------------------~rq~~~h~H~v~~~p-----dg~~v~ 159 (345)
T PF10282_consen 106 YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP---------------------DRQEGPHPHQVVFSP-----DGRFVY 159 (345)
T ss_dssp TTTTEEEEEEECTTSEEEEEEEEEESEEEESST---------------------TTTSSTCEEEEEE-T-----TSSEEE
T ss_pred ccCCeEEEEEccCCcccceeeeecccCCCCCcc---------------------cccccccceeEEECC-----CCCEEE
Confidence 9999999999988 55544421 1111111 112234455566653 468999
Q ss_pred EecCCCCeEEEEEcCCCcE-EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEE-eeCCCc-ceEe
Q psy731 283 IADSGHNHIVVYNYRTNDS-HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYF-HPLAST-TEFA 359 (494)
Q Consensus 283 I~D~~~~gliVydl~~~~s-wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf-~plss~-~ly~ 359 (494)
++|.+...|.+|++..+.- .... ......+ -.|=-.|+++|+ ++.+|. +-++++ ..|.
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~-~~~~~~~--------------G~GPRh~~f~pd----g~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPV-DSIKVPP--------------GSGPRHLAFSPD----GKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEE-EEEECST--------------TSSEEEEEE-TT----SSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEEeCCCceEEEe-ecccccc--------------CCCCcEEEEcCC----cCEEEEecCCCCcEEEEe
Confidence 9999999999999986651 1111 1111111 123345888886 378888 455553 4444
Q ss_pred eechhhcCCCcCccccccceEEecc--cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCC--CCccccccceeeeeec
Q psy731 360 VTTKVLQNRSLDFSRSNFDFKVMGS--RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTF--RGEEYNEKSMGLVAED 435 (494)
Q Consensus 360 V~T~~L~~~~~~~~~~~~~v~~~G~--~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~--~~~~~~~~~~~~v~~d 435 (494)
+.++ +..+. ..+.+..+.. .|. ..+.+++++|..-.||.+.-..+.|..++.+ +| .+ ..+..-
T Consensus 221 ~~~~---~g~~~---~~~~~~~~~~~~~~~-~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-~l-----~~~~~~ 287 (345)
T PF10282_consen 221 YDPS---DGSLT---EIQTISTLPEGFTGE-NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-TL-----TLVQTV 287 (345)
T ss_dssp EETT---TTEEE---EEEEEESCETTSCSS-SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-TE-----EEEEEE
T ss_pred eccc---CCcee---EEEEeeecccccccc-CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-ce-----EEEEEE
Confidence 4311 11110 1112222222 221 2467889995444899999999999999873 22 22 222221
Q ss_pred CCeEecccceEEcCCce-EEEEe
Q psy731 436 NATLIYPSDIRVDRTGV-LWVLS 457 (494)
Q Consensus 436 ~~~l~~pd~~~id~~g~-Lwvls 457 (494)
+-.-.+|-+|.++++|. |||..
T Consensus 288 ~~~G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 288 PTGGKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp EESSSSEEEEEE-TTSSEEEEEE
T ss_pred eCCCCCccEEEEeCCCCEEEEEe
Confidence 11236899999999884 66653
No 13
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.0014 Score=67.76 Aligned_cols=260 Identities=15% Similarity=0.223 Sum_probs=158.2
Q ss_pred CceEEeeEEEcCCC-eEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731 125 NLTSVVKVQSDPCD-RLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL 203 (494)
Q Consensus 125 ~lvsV~~i~iD~~~-~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v 203 (494)
.+.++.=+.++++. +|+++----. .|.-.-..+|-.+|++-.-=. ...+.+...++.||- ++.|+
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~----~ggvaay~iD~~~G~Lt~ln~-----~~~~g~~p~yvsvd~-----~g~~v 103 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGE----EGGVAAYRIDPDDGRLTFLNR-----QTLPGSPPCYVSVDE-----DGRFV 103 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCC----cCcEEEEEEcCCCCeEEEeec-----cccCCCCCeEEEECC-----CCCEE
Confidence 34555666666554 6777632111 122244455555566543111 122445557888875 67899
Q ss_pred EEeeCCCCeEEEEEccC-CceeEEe----cCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731 204 YIADSGHNHIVVYNYRT-NDSHIIH----HNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD 278 (494)
Q Consensus 204 YItDs~~~~iIVyd~~~-~~~~rv~----~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~ 278 (494)
|.+.=..+.|-||=+++ |+.|... |--..|+| .+..+-..++++..| .
T Consensus 104 f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~--------------------rQ~~~h~H~a~~tP~-------~ 156 (346)
T COG2706 104 FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHE--------------------RQESPHVHSANFTPD-------G 156 (346)
T ss_pred EEEEccCceEEEEEcccCCccccceeeeecCCCCCCc--------------------cccCCccceeeeCCC-------C
Confidence 99999999999999955 8888772 21111111 223333334444443 5
Q ss_pred cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEE-eeCCCc-c
Q psy731 279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYF-HPLAST-T 356 (494)
Q Consensus 279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf-~plss~-~ 356 (494)
.|+..+|++...|.+|++..++.-...-..++ |..| -==|++.|. .+..|. +=|+|+ .
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~--~G~G--------------PRHi~FHpn----~k~aY~v~EL~stV~ 216 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK--PGAG--------------PRHIVFHPN----GKYAYLVNELNSTVD 216 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccccccccC--CCCC--------------cceEEEcCC----CcEEEEEeccCCEEE
Confidence 79999999999999999998876555444433 2222 112777775 478887 788887 5
Q ss_pred eEeeech--hhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeC--CCCccccccceee
Q psy731 357 EFAVTTK--VLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNT--FRGEEYNEKSMGL 431 (494)
Q Consensus 357 ly~V~T~--~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~--~~~~~~~~~~~~~ 431 (494)
.|..+.. .|+.-. .-..+.++| -|+ ..+..+.+. .+| .||.++-..++|.++.. .+| .+++
T Consensus 217 v~~y~~~~g~~~~lQ-~i~tlP~dF--~g~----~~~aaIhis-~dGrFLYasNRg~dsI~~f~V~~~~g------~L~~ 282 (346)
T COG2706 217 VLEYNPAVGKFEELQ-TIDTLPEDF--TGT----NWAAAIHIS-PDGRFLYASNRGHDSIAVFSVDPDGG------KLEL 282 (346)
T ss_pred EEEEcCCCceEEEee-eeccCcccc--CCC----CceeEEEEC-CCCCEEEEecCCCCeEEEEEEcCCCC------EEEE
Confidence 5555553 111100 111122332 233 346788998 566 89999999999998765 442 2456
Q ss_pred eeecCCeEecccceEEcCCceEEEEecC
Q psy731 432 VAEDNATLIYPSDIRVDRTGVLWVLSNK 459 (494)
Q Consensus 432 v~~d~~~l~~pd~~~id~~g~Lwvlsnr 459 (494)
+..-+..-+||=++-+++.|.+.+.+||
T Consensus 283 ~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 283 VGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred EEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 6655567799999999998876665543
No 14
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.07 E-value=0.0044 Score=60.24 Aligned_cols=226 Identities=15% Similarity=0.086 Sum_probs=121.1
Q ss_pred eEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC
Q psy731 131 KVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG 209 (494)
Q Consensus 131 ~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~ 209 (494)
.+..+++++ |++...... .|..||+.++++++++..+. ....+.++ .+..++|++...
T Consensus 35 ~l~~~~dg~~l~~~~~~~~--------~v~~~d~~~~~~~~~~~~~~--------~~~~~~~~-----~~g~~l~~~~~~ 93 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSD--------TIQVIDLATGEVIGTLPSGP--------DPELFALH-----PNGKILYIANED 93 (300)
T ss_pred ceEECCCCCEEEEEECCCC--------eEEEEECCCCcEEEeccCCC--------CccEEEEC-----CCCCEEEEEcCC
Confidence 456666665 566655443 68889999998887654332 11233332 246689999887
Q ss_pred CCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731 210 HNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH 288 (494)
Q Consensus 210 ~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~ 288 (494)
.+.|.+||+++++..+. .. ......+.++. ++.+++++....
T Consensus 94 ~~~l~~~d~~~~~~~~~~~~--------------------------------~~~~~~~~~~~-----dg~~l~~~~~~~ 136 (300)
T TIGR03866 94 DNLVTVIDIETRKVLAEIPV--------------------------------GVEPEGMAVSP-----DGKIVVNTSETT 136 (300)
T ss_pred CCeEEEEECCCCeEEeEeeC--------------------------------CCCcceEEECC-----CCCEEEEEecCC
Confidence 78999999988654332 10 00112334432 234555554444
Q ss_pred CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcc--eEeeechhhc
Q psy731 289 NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTT--EFAVTTKVLQ 366 (494)
Q Consensus 289 ~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~--ly~V~T~~L~ 366 (494)
..+.+||.++++..+.. . . .....+++++|+ ++.||+..-.+.+ +|.+.+..+.
T Consensus 137 ~~~~~~d~~~~~~~~~~--~-~-----------------~~~~~~~~~s~d----g~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 137 NMAHFIDTKTYEIVDNV--L-V-----------------DQRPRFAEFTAD----GKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred CeEEEEeCCCCeEEEEE--E-c-----------------CCCccEEEECCC----CCEEEEEcCCCCEEEEEEcCcceee
Confidence 45667787765432211 0 0 011234778876 3678776432323 3433332110
Q ss_pred CCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccce
Q psy731 367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDI 445 (494)
Q Consensus 367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~ 445 (494)
. . + .++.-+......+..+++++ .+| .+|.+....+.|..||.++++ . ...+... ..|.++
T Consensus 193 ~-~-----~--~~~~~~~~~~~~~~~~i~~s-~dg~~~~~~~~~~~~i~v~d~~~~~-~----~~~~~~~----~~~~~~ 254 (300)
T TIGR03866 193 K-K-----I--TFEIPGVHPEAVQPVGIKLT-KDGKTAFVALGPANRVAVVDAKTYE-V----LDYLLVG----QRVWQL 254 (300)
T ss_pred e-e-----e--eecccccccccCCccceEEC-CCCCEEEEEcCCCCeEEEEECCCCc-E----EEEEEeC----CCcceE
Confidence 0 0 0 00000100001234578888 555 568877778899999987631 1 1222222 246788
Q ss_pred EEcCCce-EEEE
Q psy731 446 RVDRTGV-LWVL 456 (494)
Q Consensus 446 ~id~~g~-Lwvl 456 (494)
.+.++|. ||+.
T Consensus 255 ~~~~~g~~l~~~ 266 (300)
T TIGR03866 255 AFTPDEKYLLTT 266 (300)
T ss_pred EECCCCCEEEEE
Confidence 8888885 5544
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.07 E-value=0.0013 Score=66.95 Aligned_cols=222 Identities=16% Similarity=0.237 Sum_probs=124.0
Q ss_pred EEEEEECCC-Cc--EEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccC-CceeEEecCccc
Q psy731 157 SVQVYDLRQ-QM--QIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRT-NDSHIIHHNYLH 232 (494)
Q Consensus 157 klv~~dl~t-~~--vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~-~~~~rv~~~~~~ 232 (494)
.|..||+.+ ++ ++++++.. +..+.++++. +..++|++.....+|.+|+++. |+.-.+.....
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~--------~~~~~l~~sp-----d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~- 78 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVP--------GQVQPMVISP-----DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL- 78 (330)
T ss_pred CEEEEEECCCCceeeeeEEecC--------CCCccEEECC-----CCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-
Confidence 577777754 33 44544322 2344556642 5689999988889999999973 44322321111
Q ss_pred cCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcE-EEEecCCccc
Q psy731 233 FDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDS-HIIHHNYLHF 311 (494)
Q Consensus 233 ~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~s-wrv~~~~~~~ 311 (494)
......++++. ++.++|++....+.|.||++.++.. .+..+.
T Consensus 79 ----------------------------~~~p~~i~~~~-----~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~---- 121 (330)
T PRK11028 79 ----------------------------PGSPTHISTDH-----QGRFLFSASYNANCVSVSPLDKDGIPVAPIQI---- 121 (330)
T ss_pred ----------------------------CCCceEEEECC-----CCCEEEEEEcCCCeEEEEEECCCCCCCCceee----
Confidence 01123455553 4689999988888999999974321 111000
Q ss_pred CCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCC
Q psy731 312 DPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQS 391 (494)
Q Consensus 312 dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs 391 (494)
+.| ..+..+++++|+ ++.||...+...++.-...+. +..+... ....++. ..| ...
T Consensus 122 --------~~~-----~~~~~~~~~~p~----g~~l~v~~~~~~~v~v~d~~~--~g~l~~~-~~~~~~~--~~g--~~p 177 (330)
T PRK11028 122 --------IEG-----LEGCHSANIDPD----NRTLWVPCLKEDRIRLFTLSD--DGHLVAQ-EPAEVTT--VEG--AGP 177 (330)
T ss_pred --------ccC-----CCcccEeEeCCC----CCEEEEeeCCCCEEEEEEECC--CCccccc-CCCceec--CCC--CCC
Confidence 001 123567899986 479999777666444443321 1111100 0011111 112 124
Q ss_pred CeEEeeCCCCeEEEeccCCCeEEEEeCCC--Cccccccceeeee---ecCCeEecccceEEcCCc-eEEEE
Q psy731 392 GASSLDEETGVIFYALLVKSGVGCWNTFR--GEEYNEKSMGLVA---EDNATLIYPSDIRVDRTG-VLWVL 456 (494)
Q Consensus 392 ~g~~~D~~~G~ly~~~~~~~aI~~w~~~~--~~~~~~~~~~~v~---~d~~~l~~pd~~~id~~g-~Lwvl 456 (494)
.+++++|....+|.+....+.|.+|+.+. | .+. -++.+. .+-..-.||.++.++++| +||+.
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-~~~--~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-EIE--CVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-CEE--EEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 57899955557888888899999999862 1 221 111111 110112488889998887 57875
No 16
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.03 E-value=0.00067 Score=68.51 Aligned_cols=250 Identities=15% Similarity=0.199 Sum_probs=163.4
Q ss_pred eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731 127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA 206 (494)
Q Consensus 127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt 206 (494)
...+.+..+.+|.+|.-+.|+. .|=..|.+|+++.+ |.|++ .|.-..++|+ -++-++|+
T Consensus 62 ~ap~dvapapdG~VWft~qg~g--------aiGhLdP~tGev~~-ypLg~------Ga~Phgiv~g------pdg~~Wit 120 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTG--------AIGHLDPATGEVET-YPLGS------GASPHGIVVG------PDGSAWIT 120 (353)
T ss_pred CCccccccCCCCceEEecCccc--------cceecCCCCCceEE-EecCC------CCCCceEEEC------CCCCeeEe
Confidence 3456778889999999999998 67888999999864 88877 5566677875 47889999
Q ss_pred eCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731 207 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS 286 (494)
Q Consensus 207 Ds~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~ 286 (494)
|++. +|.-+|-++...-|+ +|+- ......|+..++|. .+.++++-.
T Consensus 121 d~~~-aI~R~dpkt~evt~f------------------------~lp~---~~a~~nlet~vfD~------~G~lWFt~q 166 (353)
T COG4257 121 DTGL-AIGRLDPKTLEVTRF------------------------PLPL---EHADANLETAVFDP------WGNLWFTGQ 166 (353)
T ss_pred cCcc-eeEEecCcccceEEe------------------------eccc---ccCCCcccceeeCC------CccEEEeec
Confidence 9999 999999888877666 4431 22344577777874 345555532
Q ss_pred C-CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhh
Q psy731 287 G-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVL 365 (494)
Q Consensus 287 ~-~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L 365 (494)
. .+| .-||-...+.|=-.+ .-.|-.||...|+ ..+||..|.+.-+=+|.+..=
T Consensus 167 ~G~yG-------------------rLdPa~~~i~vfpaP--qG~gpyGi~atpd-----Gsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 167 IGAYG-------------------RLDPARNVISVFPAP--QGGGPYGICATPD-----GSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred cccce-------------------ecCcccCceeeeccC--CCCCCcceEECCC-----CcEEEEeccccceEEcccccC
Confidence 1 122 122222222211111 1135788999886 389999999988888876433
Q ss_pred cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccce
Q psy731 366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDI 445 (494)
Q Consensus 366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~ 445 (494)
..+.+. +.-+.+ .-+..+..| ..|.+..++-...++.++||..- .. ....+--. .. =|.++
T Consensus 221 ~aev~p--------~P~~~~---~gsRriwsd-pig~~wittwg~g~l~rfdPs~~-sW--~eypLPgs-~a---rpys~ 281 (353)
T COG4257 221 HAEVVP--------QPNALK---AGSRRIWSD-PIGRAWITTWGTGSLHRFDPSVT-SW--IEYPLPGS-KA---RPYSM 281 (353)
T ss_pred Ccceec--------CCCccc---ccccccccC-ccCcEEEeccCCceeeEeCcccc-cc--eeeeCCCC-CC---Cccee
Confidence 221110 011111 124567788 79999999999999999999761 01 00111111 12 37899
Q ss_pred EEcCCceEEEE---ecCchhhhcCCCCCCcccEEEEEEe
Q psy731 446 RVDRTGVLWVL---SNKLPVFLYSKLKPEDINVRIFKST 481 (494)
Q Consensus 446 ~id~~g~Lwvl---snrl~~~~~~~~~~~~~nfrI~r~~ 481 (494)
.+|..|.+|.. +|-+. ++|..+..|++|-.+
T Consensus 282 rVD~~grVW~sea~agai~-----rfdpeta~ftv~p~p 315 (353)
T COG4257 282 RVDRHGRVWLSEADAGAIG-----RFDPETARFTVLPIP 315 (353)
T ss_pred eeccCCcEEeeccccCcee-----ecCcccceEEEecCC
Confidence 99999999996 35554 346777778877654
No 17
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.00 E-value=0.00056 Score=69.03 Aligned_cols=243 Identities=14% Similarity=0.216 Sum_probs=147.7
Q ss_pred CCccccCCCcccccccCCCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCc
Q psy731 107 SPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKF 186 (494)
Q Consensus 107 sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l 186 (494)
+++.+-||--+ =-+..+|.+++++-+|+.|.|.. |.++|.+|..+.+ +.||. ..+.-.|
T Consensus 92 tGev~~ypLg~--------Ga~Phgiv~gpdg~~Witd~~~a---------I~R~dpkt~evt~-f~lp~---~~a~~nl 150 (353)
T COG4257 92 TGEVETYPLGS--------GASPHGIVVGPDGSAWITDTGLA---------IGRLDPKTLEVTR-FPLPL---EHADANL 150 (353)
T ss_pred CCceEEEecCC--------CCCCceEEECCCCCeeEecCcce---------eEEecCcccceEE-eeccc---ccCCCcc
Confidence 45666666422 24678889999999999999984 8999999988754 99987 3578889
Q ss_pred cceEEEeecCCCCCcEEEEeeCCC-CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccce
Q psy731 187 SNMVVDVTSANCDNAFLYIADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFS 265 (494)
Q Consensus 187 ~d~vVD~~~~~c~~~~vYItDs~~-~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~ 265 (494)
+..+.| ..++++.|-..+ ++ -+|-.++...-+ - ++++....
T Consensus 151 et~vfD------~~G~lWFt~q~G~yG--rLdPa~~~i~vf------------------------p------aPqG~gpy 192 (353)
T COG4257 151 ETAVFD------PWGNLWFTGQIGAYG--RLDPARNVISVF------------------------P------APQGGGPY 192 (353)
T ss_pred cceeeC------CCccEEEeeccccce--ecCcccCceeee------------------------c------cCCCCCCc
Confidence 999998 677777776533 11 122222222111 0 12333344
Q ss_pred eeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCce
Q psy731 266 NMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFR 345 (494)
Q Consensus 266 ~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r 345 (494)
.|.+-. ++-+|.+-..++.|...|-.++.+=+|..+ ++ +..|.-+|..+|. +
T Consensus 193 Gi~atp------dGsvwyaslagnaiaridp~~~~aev~p~P----~~-------------~~~gsRriwsdpi-----g 244 (353)
T COG4257 193 GICATP------DGSVWYASLAGNAIARIDPFAGHAEVVPQP----NA-------------LKAGSRRIWSDPI-----G 244 (353)
T ss_pred ceEECC------CCcEEEEeccccceEEcccccCCcceecCC----Cc-------------ccccccccccCcc-----C
Confidence 444432 466888887888888887777754444322 11 1123334444443 2
Q ss_pred eEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCcccc
Q psy731 346 VMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYN 425 (494)
Q Consensus 346 ~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~ 425 (494)
.+.-+--....+++++.+.- +..+..+-|.+ .....|-+| +.|.+++.+...++|.++|+.+
T Consensus 245 ~~wittwg~g~l~rfdPs~~---------sW~eypLPgs~---arpys~rVD-~~grVW~sea~agai~rfdpet----- 306 (353)
T COG4257 245 RAWITTWGTGSLHRFDPSVT---------SWIEYPLPGSK---ARPYSMRVD-RHGRVWLSEADAGAIGRFDPET----- 306 (353)
T ss_pred cEEEeccCCceeeEeCcccc---------cceeeeCCCCC---CCcceeeec-cCCcEEeeccccCceeecCccc-----
Confidence 33333333335555543221 12334444443 567889999 9999999999999999999998
Q ss_pred ccceeeeeecCCeEecccceEEc-CCceEEEEec
Q psy731 426 EKSMGLVAEDNATLIYPSDIRVD-RTGVLWVLSN 458 (494)
Q Consensus 426 ~~~~~~v~~d~~~l~~pd~~~id-~~g~Lwvlsn 458 (494)
..+.++-.+.+. +.-+..+ .-|+||....
T Consensus 307 -a~ftv~p~pr~n---~gn~ql~gr~ge~W~~e~ 336 (353)
T COG4257 307 -ARFTVLPIPRPN---SGNIQLDGRPGELWFTEA 336 (353)
T ss_pred -ceEEEecCCCCC---CCceeccCCCCceeeccc
Confidence 244555443222 2233343 3568888753
No 18
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.76 E-value=0.006 Score=61.17 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=42.0
Q ss_pred CCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecC------CeEecccceEEcCCceEEEEe--cCch
Q psy731 390 QSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDN------ATLIYPSDIRVDRTGVLWVLS--NKLP 461 (494)
Q Consensus 390 qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~------~~l~~pd~~~id~~g~Lwvls--nrl~ 461 (494)
...|+++||.+|+||.=.-+...|...|.++ .. ...+.-+. ..+.=|-||++|++|.|||.+ |+|-
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G--~~----~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy 245 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQG--RV----VSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFY 245 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT----E----EEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCC--CE----EEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEE
Confidence 3568899999999999999999999999887 22 12222221 345569999999999999998 5543
No 19
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.61 E-value=0.074 Score=55.83 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=47.5
Q ss_pred CCeEEEeccCCCeEEEEeCC--CCccccccceeeeeecCCeEecccceEEcCCceEEEEe--cCchhhhcCCCCCCcccE
Q psy731 400 TGVIFYALLVKSGVGCWNTF--RGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS--NKLPVFLYSKLKPEDINV 475 (494)
Q Consensus 400 ~G~ly~~~~~~~aI~~w~~~--~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls--nrl~~~~~~~~~~~~~nf 475 (494)
.|.+|+++.....|.+...+ +. .+..+....+... ...-=|-++.+++||.|||+. +..=...+-.+......=
T Consensus 281 ~g~~fv~~~~~~~v~~~~l~~~g~-~~~~~~~~~l~~~-~~~~rp~dv~~~pDG~Lyv~d~~~~~i~~~~~d~~~~~~~G 358 (367)
T TIGR02604 281 RGLLLVGDAHGQLIVRYSLEPKGA-GFKGERPEFLRSN-DTWFRPVNVTVGPDGALYVSDWYDRGIEHHHDDLNDGRNSG 358 (367)
T ss_pred CCCEEeeeccCCEEEEEEeecCCC-ccEeecCceEecC-CCcccccceeECCCCCEEEEEeccCccccCCcccccCCCCc
Confidence 58999999999999988753 31 2322212233322 222347789999999999986 111000000122334567
Q ss_pred EEEEEec
Q psy731 476 RIFKSTV 482 (494)
Q Consensus 476 rI~r~~~ 482 (494)
||||+..
T Consensus 359 rIyRi~~ 365 (367)
T TIGR02604 359 RIYRITP 365 (367)
T ss_pred eEEEEcc
Confidence 8999864
No 20
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.014 Score=60.28 Aligned_cols=182 Identities=14% Similarity=0.115 Sum_probs=104.7
Q ss_pred CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD 278 (494)
Q Consensus 199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~ 278 (494)
++..+|.+|-.++.|+.||..+|+..-+..... ......+|. +
T Consensus 35 ~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~-------------------------------~~~~~~~d~------~ 77 (307)
T COG3386 35 DRGALLWVDILGGRIHRLDPETGKKRVFPSPGG-------------------------------FSSGALIDA------G 77 (307)
T ss_pred CCCEEEEEeCCCCeEEEecCCcCceEEEECCCC-------------------------------cccceeecC------C
Confidence 567789999999999999988887766632111 112223332 2
Q ss_pred cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC----
Q psy731 279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS---- 354 (494)
Q Consensus 279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss---- 354 (494)
+.+... ..|+..++.+++..|+..+....--| .-.+.| .-+.|+ ..+||..|.+
T Consensus 78 g~Lv~~---~~g~~~~~~~~~~~~t~~~~~~~~~~----------~~r~ND----~~v~pd-----G~~wfgt~~~~~~~ 135 (307)
T COG3386 78 GRLIAC---EHGVRLLDPDTGGKITLLAEPEDGLP----------LNRPND----GVVDPD-----GRIWFGDMGYFDLG 135 (307)
T ss_pred CeEEEE---ccccEEEeccCCceeEEeccccCCCC----------cCCCCc----eeEcCC-----CCEEEeCCCccccC
Confidence 333333 34556666666666655443211111 011122 234443 3788877772
Q ss_pred c-------ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCC--CCcccc
Q psy731 355 T-------TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTF--RGEEYN 425 (494)
Q Consensus 355 ~-------~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~--~~~~~~ 425 (494)
. .+|+++.. ....+.+-+. ..++.|++.+|..-.||+++...+.|.+++-+ +|...+
T Consensus 136 ~~~~~~~G~lyr~~p~------------g~~~~l~~~~--~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~ 201 (307)
T COG3386 136 KSEERPTGSLYRVDPD------------GGVVRLLDDD--LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG 201 (307)
T ss_pred ccccCCcceEEEEcCC------------CCEEEeecCc--EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC
Confidence 1 35555421 1122222221 25688999996555999999999999999765 232222
Q ss_pred ccceeeeeecCCeEecccceEEcCCceEEEE
Q psy731 426 EKSMGLVAEDNATLIYPSDIRVDRTGVLWVL 456 (494)
Q Consensus 426 ~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvl 456 (494)
. ...+..+. .=-.|||+.+|.+|.||+.
T Consensus 202 -~-~~~~~~~~-~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 202 -R-RGFVDFDE-EPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred -c-ceEEEccC-CCCCCCceEEeCCCCEEEe
Confidence 2 12233322 2257999999999999974
No 21
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.066 Score=56.66 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=133.2
Q ss_pred EeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731 129 VVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD 207 (494)
Q Consensus 129 V~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD 207 (494)
..++.++. ..+++|.+.... .+.++|+.++++.+.+.+.. ....+++|. +..++|++|
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~--------~v~vid~~~~~~~~~~~vG~--------~P~~~~~~~-----~~~~vYV~n 134 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSN--------TVSVIDTATNTVLGSIPVGL--------GPVGLAVDP-----DGKYVYVAN 134 (381)
T ss_pred ccceeeCCCCCeEEEecCCCC--------eEEEEcCcccceeeEeeecc--------CCceEEECC-----CCCEEEEEe
Confidence 34444443 456888887765 78889999999988776544 556777764 788999999
Q ss_pred CC--CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEec
Q psy731 208 SG--HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIAD 285 (494)
Q Consensus 208 s~--~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D 285 (494)
++ .+.+.|.|-.+++.-+- .+.+.....+++|. +..++|++|
T Consensus 135 ~~~~~~~vsvid~~t~~~~~~-------------------------------~~vG~~P~~~a~~p-----~g~~vyv~~ 178 (381)
T COG3391 135 AGNGNNTVSVIDAATNKVTAT-------------------------------IPVGNTPTGVAVDP-----DGNKVYVTN 178 (381)
T ss_pred cccCCceEEEEeCCCCeEEEE-------------------------------EecCCCcceEEECC-----CCCeEEEEe
Confidence 95 57788888777765333 01111124566664 468899999
Q ss_pred CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC--cceEeeech
Q psy731 286 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS--TTEFAVTTK 363 (494)
Q Consensus 286 ~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss--~~ly~V~T~ 363 (494)
...+.|.++|.++...|| .+....-.. -.+-.+++++|++ ..+|..-..+ ...+.+.+.
T Consensus 179 ~~~~~v~vi~~~~~~v~~-~~~~~~~~~--------------~~~P~~i~v~~~g----~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 179 SDDNTVSVIDTSGNSVVR-GSVGSLVGV--------------GTGPAGIAVDPDG----NRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred cCCCeEEEEeCCCcceec-ccccccccc--------------CCCCceEEECCCC----CEEEEEeccCCCceEEEEeCC
Confidence 999999999999999888 543211111 1223458998873 5777766665 355555543
Q ss_pred hhcCCCcCccccccceEEe-cccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731 364 VLQNRSLDFSRSNFDFKVM-GSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR 420 (494)
Q Consensus 364 ~L~~~~~~~~~~~~~v~~~-G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~ 420 (494)
.. .+... ...+.. +..+.+.+|....+|......+.+...|..+
T Consensus 240 ~~------------~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 240 TG------------NVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred Cc------------eEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 32 11111 112223 5677889866667777777778888888776
No 22
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.31 E-value=0.11 Score=54.69 Aligned_cols=288 Identities=11% Similarity=0.035 Sum_probs=153.1
Q ss_pred eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcC-CCeEEEEeCCCCC
Q psy731 71 WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDP-CDRLWALDSGVVE 149 (494)
Q Consensus 71 ~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~-~~~LwvlD~G~~~ 149 (494)
...|+||+=+.+.... .++.+|..+.. -.+.=.|--.. ..+ + +.+ ...|||..+...-
T Consensus 11 ~~~~v~V~d~~~~~~~-~~v~ViD~~~~---------~v~g~i~~G~~----P~~------~-~spDg~~lyva~~~~~R 69 (352)
T TIGR02658 11 DARRVYVLDPGHFAAT-TQVYTIDGEAG---------RVLGMTDGGFL----PNP------V-VASDGSFFAHASTVYSR 69 (352)
T ss_pred CCCEEEEECCcccccC-ceEEEEECCCC---------EEEEEEEccCC----Cce------e-ECCCCCEEEEEeccccc
Confidence 3567888877743333 77778775432 11211221100 111 1 223 4478888882211
Q ss_pred -CCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-CCeEEEEEccCCceeE-E
Q psy731 150 -GKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-HNHIVVYNYRTNDSHI-I 226 (494)
Q Consensus 150 -~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-~~~iIVyd~~~~~~~r-v 226 (494)
..-...-.|.+||+.|.++++++++|++.-......-..+++. .++.++||++.. .+++-|+|+.+++.-+ |
T Consensus 70 ~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls-----~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 70 IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT-----PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred cccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC-----CCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 0001122899999999999999999883111112233344443 367899999976 8999999999999876 3
Q ss_pred ---ecCccccCCCCCccccCCccce-eeeecccccccccccceeeE-Ee-------eec--CCCCCcEEEEecCCCCeEE
Q psy731 227 ---HHNYLHFDPLFGDFTIGGEYSE-FFQLKEKTDYTEESKFSNMV-VD-------VTS--ANCDDAFLYIADSGHNHIV 292 (494)
Q Consensus 227 ---~~~~~~~dp~~~~f~i~g~~~~-~f~l~~~~~~~~~s~~~~i~-VD-------~~~--~~c~~~~~YI~D~~~~gli 292 (494)
+-.-.|+=+.-+.+.+.++-+- ..++.++.. +...+.. +| .++ ..-+++.+|++-. ..+.
T Consensus 145 ~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~----~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e--G~V~ 218 (352)
T TIGR02658 145 DVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN----PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT--GKIF 218 (352)
T ss_pred eCCCCcEEEEecCCccEEEeecCceEEEEecCCCc----eEEeeeeeecCCccccccCCceEcCCCcEEEEecC--CeEE
Confidence 1122222222222222222211 122221111 1111221 12 222 1224677888765 6677
Q ss_pred EEEcCCCc-----EEEEecCCcccCCCCcceEEcCEEeee-ecceeeeeeccCCCCCceeEEEee---------CCCcce
Q psy731 293 VYNYRTND-----SHIIHHNYLHFDPLFGDFTIGGVNFQW-QTGIHGMSLSPLTRDNFRVMYFHP---------LASTTE 357 (494)
Q Consensus 293 Vydl~~~~-----swrv~~~~~~~dP~~~~~~v~G~~f~~-~~Gi~gIaLsp~~~~g~r~LYf~p---------lss~~l 357 (494)
+.|+.+.. .|.+.. ..+ ..=.| +.|.-+||++|+ ++.||... ..+.++
T Consensus 219 ~id~~~~~~~~~~~~~~~~----~~~---------~~~~wrP~g~q~ia~~~d----g~~lyV~~~~~~~~thk~~~~~V 281 (352)
T TIGR02658 219 QIDLSSGDAKFLPAIEAFT----EAE---------KADGWRPGGWQQVAYHRA----RDRIYLLADQRAKWTHKTASRFL 281 (352)
T ss_pred EEecCCCcceecceeeecc----ccc---------cccccCCCcceeEEEcCC----CCEEEEEecCCccccccCCCCEE
Confidence 88854443 232211 000 00012 356667999987 37999843 344566
Q ss_pred EeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCC
Q psy731 358 FAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRG 421 (494)
Q Consensus 358 y~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~ 421 (494)
.-|.++-.+ ....+ .+|.+ .-++++.+... .||.+.-..+.|...|+.++
T Consensus 282 ~ViD~~t~k--------vi~~i-~vG~~-----~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 282 FVVDAKTGK--------RLRKI-ELGHE-----IDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEECCCCe--------EEEEE-eCCCc-----eeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 666553221 11111 13433 57899995445 67778878888999999874
No 23
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.093 Score=54.66 Aligned_cols=165 Identities=15% Similarity=0.214 Sum_probs=107.1
Q ss_pred CCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCC
Q psy731 197 NCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANC 276 (494)
Q Consensus 197 ~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c 276 (494)
+.++.|+.+.|-|...|.+|++.+|+.-+.+- ..++++++.+.|++-.
T Consensus 153 tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~---------------------------~~v~~G~GPRHi~FHp----- 200 (346)
T COG2706 153 TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP---------------------------AEVKPGAGPRHIVFHP----- 200 (346)
T ss_pred CCCCCEEEEeecCCceEEEEEcccCccccccc---------------------------cccCCCCCcceEEEcC-----
Confidence 34678999999999999999999999877632 3457888899999874
Q ss_pred CCcEEEEecCCCCeEEEEEcCC--CcEEEEe-cCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEee--
Q psy731 277 DDAFLYIADSGHNHIVVYNYRT--NDSHIIH-HNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHP-- 351 (494)
Q Consensus 277 ~~~~~YI~D~~~~gliVydl~~--~~swrv~-~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~p-- 351 (494)
+..|||+.-.....+.||.... ++.-++- +..+.. .|.-..+.--|.+||+ +|.||-+-
T Consensus 201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~------------dF~g~~~~aaIhis~d----GrFLYasNRg 264 (346)
T COG2706 201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE------------DFTGTNWAAAIHISPD----GRFLYASNRG 264 (346)
T ss_pred CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc------------ccCCCCceeEEEECCC----CCEEEEecCC
Confidence 4789999999999999999887 4444443 233322 2333445566999997 48999843
Q ss_pred CCCcceEeeechhhcCCCcCccccccceEEecccCCCCC-CCeEEeeCCCCeEEEeccCCCeE--EEEeCCCC
Q psy731 352 LASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQ-SGASSLDEETGVIFYALLVKSGV--GCWNTFRG 421 (494)
Q Consensus 352 lss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~q-s~g~~~D~~~G~ly~~~~~~~aI--~~w~~~~~ 421 (494)
..|-..|+|.. +.. ..+.++..-..+| .....+++....|+.+.-..+.| ...|+.+|
T Consensus 265 ~dsI~~f~V~~----~~g--------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 265 HDSIAVFSVDP----DGG--------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred CCeEEEEEEcC----CCC--------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 33445555532 111 1222332211233 56789994344666665555544 45566655
No 24
>KOG4659|consensus
Probab=97.13 E-value=0.017 Score=67.96 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=113.6
Q ss_pred CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD 278 (494)
Q Consensus 199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~ 278 (494)
..++.|||- .+.||-.=+.+|+.+-++=..- +..+...++|.-+++-..+ +
T Consensus 325 nG~n~~it~--~Prvitt~mgdG~qR~veC~~C-----------------------~G~a~~~~L~aPvala~a~----D 375 (1899)
T KOG4659|consen 325 NGGNRLITE--EPRVITTAMGDGHQRDVECPKC-----------------------EGKADSISLFAPVALAYAP----D 375 (1899)
T ss_pred CCcceEeec--CCceEEEeccCcccccccCCCC-----------------------CCccccceeeceeeEEEcC----C
Confidence 578899998 8889998888888888832000 1233444556655554432 4
Q ss_pred cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceE
Q psy731 279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEF 358 (494)
Q Consensus 279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly 358 (494)
+-+||-|... |.==..++....+..-.. .+| ..-.-||+||. +.+||.+-..+++.|
T Consensus 376 GSl~VGDfNy---IRRI~~dg~v~tIl~L~~-t~~---------------sh~Yy~AvsPv----dgtlyvSdp~s~qv~ 432 (1899)
T KOG4659|consen 376 GSLIVGDFNY---IRRISQDGQVSTILTLGL-TDT---------------SHSYYIAVSPV----DGTLYVSDPLSKQVW 432 (1899)
T ss_pred CcEEEccchh---eeeecCCCceEEEEEecC-CCc---------------cceeEEEecCc----CceEEecCCCcceEE
Confidence 5567766322 000011111111111000 111 22345999997 369999888889999
Q ss_pred eeechhhcCCCcCcccc-------ccceEEecccC-----CCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCc----
Q psy731 359 AVTTKVLQNRSLDFSRS-------NFDFKVMGSRG-----TGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGE---- 422 (494)
Q Consensus 359 ~V~T~~L~~~~~~~~~~-------~~~v~~~G~~G-----~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~---- 422 (494)
+|+.-.=+|.....+.+ ....+--|+-| ..-...|+++| +.|+|||++-. .|...|+++-.
T Consensus 433 rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t--~IR~iD~~giIstli 509 (1899)
T KOG4659|consen 433 RVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGT--RIRVIDTTGIISTLI 509 (1899)
T ss_pred EeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEc-cCCcEEEeccc--EEEEeccCceEEEec
Confidence 99763334433321111 01111123211 11235789999 99999999864 34555554310
Q ss_pred cccccceeeeee------cCCeEecccceEEcC-CceEEEEecCc
Q psy731 423 EYNEKSMGLVAE------DNATLIYPSDIRVDR-TGVLWVLSNKL 460 (494)
Q Consensus 423 ~~~~~~~~~v~~------d~~~l~~pd~~~id~-~g~Lwvlsnrl 460 (494)
.=++..+..+.. -+-+|.||.++++++ ++.|||+-|++
T Consensus 510 g~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nv 554 (1899)
T KOG4659|consen 510 GTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNV 554 (1899)
T ss_pred cCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecce
Confidence 000111111110 025789999999998 77899998876
No 25
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.045 Score=57.87 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=111.3
Q ss_pred EEeeEEEcCCC-eEEEEeCCC--CCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731 128 SVVKVQSDPCD-RLWALDSGV--VEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY 204 (494)
Q Consensus 128 sV~~i~iD~~~-~LwvlD~G~--~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY 204 (494)
..+.+.+|..+ .+||.|.+. . .+.++|..++++++...-.. .. -.+++|- ...++|
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~--------~vsvid~~t~~~~~~~~vG~-------~P-~~~a~~p-----~g~~vy 175 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNN--------TVSVIDAATNKVTATIPVGN-------TP-TGVAVDP-----DGNKVY 175 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCc--------eEEEEeCCCCeEEEEEecCC-------Cc-ceEEECC-----CCCeEE
Confidence 66778888766 999999974 3 79999999999999733222 11 4566653 688899
Q ss_pred EeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731 205 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA 284 (494)
Q Consensus 205 ItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~ 284 (494)
++|+..+.|.++|......++ ..... ..........+.|+. +..++|++
T Consensus 176 v~~~~~~~v~vi~~~~~~v~~-~~~~~-------------------------~~~~~~~P~~i~v~~-----~g~~~yV~ 224 (381)
T COG3391 176 VTNSDDNTVSVIDTSGNSVVR-GSVGS-------------------------LVGVGTGPAGIAVDP-----DGNRVYVA 224 (381)
T ss_pred EEecCCCeEEEEeCCCcceec-ccccc-------------------------ccccCCCCceEEECC-----CCCEEEEE
Confidence 999999999999999998887 32111 122233455667764 46889999
Q ss_pred cCCC--CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731 285 DSGH--NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT 362 (494)
Q Consensus 285 D~~~--~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T 362 (494)
+... ..+.+.|..++..-...-. ++ -. .-.+++++|+ ++.+|..-..+..++.+++
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~------------~~-----~~-~~~~v~~~p~----g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLP------------VG-----SG-APRGVAVDPA----GKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccc------------cc-----cC-CCCceeECCC----CCEEEEEecCCCeEEEEeC
Confidence 8776 5777777776553221110 00 01 2355999987 3788887666667877766
Q ss_pred hh
Q psy731 363 KV 364 (494)
Q Consensus 363 ~~ 364 (494)
+-
T Consensus 283 ~~ 284 (381)
T COG3391 283 AT 284 (381)
T ss_pred CC
Confidence 44
No 26
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.67 E-value=0.48 Score=50.11 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=45.3
Q ss_pred eeeeeccCCCCCceeEEEe-eCCCc--ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEec
Q psy731 332 HGMSLSPLTRDNFRVMYFH-PLAST--TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYAL 407 (494)
Q Consensus 332 ~gIaLsp~~~~g~r~LYf~-plss~--~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~ 407 (494)
+.|..+|+ .++||.. +|+.. .+.-|.++-| +.++.+... +......+.+. ++| .+|++.
T Consensus 272 lFi~thP~----s~~vwvd~~~~~~~~~v~viD~~tl-----------~~~~~i~~~-~~~~~~h~ef~-~dG~~v~vS~ 334 (369)
T PF02239_consen 272 LFIKTHPD----SRYVWVDTFLNPDADTVQVIDKKTL-----------KVVKTITPG-PGKRVVHMEFN-PDGKEVWVSV 334 (369)
T ss_dssp --EE--TT-----SEEEEE-TT-SSHT-EEEEECCGT-----------EEEE-HHHH-HT--EEEEEE--TTSSEEEEEE
T ss_pred ceeecCCC----CccEEeeccCCCCCceEEEEECcCc-----------ceeEEEecc-CCCcEeccEEC-CCCCEEEEEE
Confidence 77888887 5899997 55543 4444444444 112222211 00114467777 666 899999
Q ss_pred cCCC-eEEEEeCCCCccccccceeeeeecCCeEecccceEE
Q psy731 408 LVKS-GVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRV 447 (494)
Q Consensus 408 ~~~~-aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~i 447 (494)
-..+ +|..+|+.+. +++.+=+ +.=|+|.+.
T Consensus 335 ~~~~~~i~v~D~~Tl--------~~~~~i~--~~tP~G~f~ 365 (369)
T PF02239_consen 335 WDGNGAIVVYDAKTL--------KEKKRIP--VPTPTGKFN 365 (369)
T ss_dssp E--TTEEEEEETTTT--------EEEEEEE----SEEEEEE
T ss_pred ecCCCEEEEEECCCc--------EEEEEEE--eeCCCeEec
Confidence 9999 9999999882 3443321 566777653
No 27
>KOG4499|consensus
Probab=96.63 E-value=0.14 Score=51.22 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=53.2
Q ss_pred eeeeeeccCCCCCceeEEEeeCCCcce--Ee--eechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEe
Q psy731 331 IHGMSLSPLTRDNFRVMYFHPLASTTE--FA--VTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYA 406 (494)
Q Consensus 331 i~gIaLsp~~~~g~r~LYf~plss~~l--y~--V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~ 406 (494)
.+||+-+-+ .+..||.--.+... |. -+|-.|.|+.. --++. +.+. .+ ....+||++| ..|+||.+
T Consensus 160 sNgl~Wd~d----~K~fY~iDsln~~V~a~dyd~~tG~~snr~~-i~dlr-k~~~---~e-~~~PDGm~ID-~eG~L~Va 228 (310)
T KOG4499|consen 160 SNGLAWDSD----AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKV-IFDLR-KSQP---FE-SLEPDGMTID-TEGNLYVA 228 (310)
T ss_pred Ccccccccc----CcEEEEEccCceEEeeeecCCCcccccCcce-eEEec-cCCC---cC-CCCCCcceEc-cCCcEEEE
Confidence 467888755 47899854444444 33 67766665542 00111 1111 11 2457999999 89999999
Q ss_pred ccCCCeEEEEeCCCC
Q psy731 407 LLVKSGVGCWNTFRG 421 (494)
Q Consensus 407 ~~~~~aI~~w~~~~~ 421 (494)
-.+...|.+.||.+|
T Consensus 229 ~~ng~~V~~~dp~tG 243 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTG 243 (310)
T ss_pred EecCcEEEEECCCCC
Confidence 999999999999986
No 28
>KOG1214|consensus
Probab=96.12 E-value=0.045 Score=62.15 Aligned_cols=158 Identities=14% Similarity=0.221 Sum_probs=98.6
Q ss_pred CCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEe-eCC
Q psy731 275 NCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFH-PLA 353 (494)
Q Consensus 275 ~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~-pls 353 (494)
+|.+..+|-+|..++.|=.-+|...+--.+- .+..--+ -|||+.-. .|.+||. +|.
T Consensus 1033 DC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~----------------n~~L~SP---EGiAVDh~----~Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1033 DCRERMVYWTDVAGRSISRASLEGAEPETIV----------------NSGLISP---EGIAVDHI----RRNMYWTDSVL 1089 (1289)
T ss_pred ccccceEEEeecCCCccccccccCCCCceee----------------cccCCCc---cceeeeec----cceeeeecccc
Confidence 4999999999999888866666544311111 1111112 34888654 5899993 333
Q ss_pred CcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCC--CeEEEEeCCCCccccccceee
Q psy731 354 STTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVK--SGVGCWNTFRGEEYNEKSMGL 431 (494)
Q Consensus 354 s~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~--~aI~~w~~~~~~~~~~~~~~~ 431 (494)
- +|..+.| |.+. +++-..-+. -...++++|+-.|+||+++.++ -.|..-+.++ +|-++
T Consensus 1090 D----~IevA~L-dG~~------rkvLf~tdL---VNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG------~NrRi 1149 (1289)
T KOG1214|consen 1090 D----KIEVALL-DGSE------RKVLFYTDL---VNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDG------ENRRI 1149 (1289)
T ss_pred c----hhheeec-CCce------eeEEEeecc---cCcceEEeecccCceeeccccccCCcceeeccCC------ccceE
Confidence 3 5555555 3321 222222222 3456899999999999999855 4577777777 58888
Q ss_pred eeecCCeEecccceEEcCCceE--EEEe--cCchhhhcCC------CCCCcccEEE
Q psy731 432 VAEDNATLIYPSDIRVDRTGVL--WVLS--NKLPVFLYSK------LKPEDINVRI 477 (494)
Q Consensus 432 v~~d~~~l~~pd~~~id~~g~L--wvls--nrl~~~~~~~------~~~~~~nfrI 477 (494)
++++ .+-.|+|+.+|+...+ ||=+ +|+-=.++++ ++.-++||-|
T Consensus 1150 lin~--DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~i 1203 (1289)
T KOG1214|consen 1150 LINT--DIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSI 1203 (1289)
T ss_pred Eeec--ccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhcccCceee
Confidence 8875 4678999999997743 8874 6664333322 2234566655
No 29
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.03 E-value=0.83 Score=48.34 Aligned_cols=197 Identities=14% Similarity=0.133 Sum_probs=110.3
Q ss_pred CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEE
Q psy731 137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVY 216 (494)
Q Consensus 137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVy 216 (494)
.+-+.|...+.. +|.++|..|.+++++++...+ ....+. ...+..|+|++.. .+.|-|+
T Consensus 5 ~~l~~V~~~~~~--------~v~viD~~t~~~~~~i~~~~~-------~h~~~~-----~s~Dgr~~yv~~r-dg~vsvi 63 (369)
T PF02239_consen 5 GNLFYVVERGSG--------SVAVIDGATNKVVARIPTGGA-------PHAGLK-----FSPDGRYLYVANR-DGTVSVI 63 (369)
T ss_dssp GGEEEEEEGGGT--------EEEEEETTT-SEEEEEE-STT-------EEEEEE------TT-SSEEEEEET-TSEEEEE
T ss_pred ccEEEEEecCCC--------EEEEEECCCCeEEEEEcCCCC-------ceeEEE-----ecCCCCEEEEEcC-CCeEEEE
Confidence 334455666665 788888888888888875431 111111 1235779999964 5789999
Q ss_pred EccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEc
Q psy731 217 NYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNY 296 (494)
Q Consensus 217 d~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl 296 (494)
|+.+++.-+- ++.+....++++.. ++.|+|++....+.+.|+|.
T Consensus 64 D~~~~~~v~~-------------------------------i~~G~~~~~i~~s~-----DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 64 DLATGKVVAT-------------------------------IKVGGNPRGIAVSP-----DGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp ETTSSSEEEE-------------------------------EE-SSEEEEEEE-------TTTEEEEEEEETTEEEEEET
T ss_pred ECCcccEEEE-------------------------------EecCCCcceEEEcC-----CCCEEEEEecCCCceeEecc
Confidence 9999984322 22233345555542 57899999999999999999
Q ss_pred CCCcEEEEe-cCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCcccc
Q psy731 297 RTNDSHIIH-HNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRS 375 (494)
Q Consensus 297 ~~~~swrv~-~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~ 375 (494)
++.+--+.- -..+..+.. ...+-+|.-+|. .....+.-+-+.+.+-|..+.+++..
T Consensus 108 ~tle~v~~I~~~~~~~~~~-------------~~Rv~aIv~s~~----~~~fVv~lkd~~~I~vVdy~d~~~~~------ 164 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGP-------------ESRVAAIVASPG----RPEFVVNLKDTGEIWVVDYSDPKNLK------ 164 (369)
T ss_dssp TT--EEEEEE--EE-TTTS----------------EEEEEE-SS----SSEEEEEETTTTEEEEEETTTSSCEE------
T ss_pred ccccceeeccccccccccc-------------CCCceeEEecCC----CCEEEEEEccCCeEEEEEeccccccc------
Confidence 987754432 122211110 112455666664 23455555656677777654442211
Q ss_pred ccceEEecccCCCCCCCeEEeeCCCCeE-EEeccCCCeEEEEeCCC
Q psy731 376 NFDFKVMGSRGTGSQSGASSLDEETGVI-FYALLVKSGVGCWNTFR 420 (494)
Q Consensus 376 ~~~v~~~G~~G~~~qs~g~~~D~~~G~l-y~~~~~~~aI~~w~~~~ 420 (494)
......|+ +.....+| .+|.. +.+.-..|.|..+|+.+
T Consensus 165 -~~~i~~g~-----~~~D~~~d-pdgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 165 -VTTIKVGR-----FPHDGGFD-PDGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp -EEEEE--T-----TEEEEEE--TTSSEEEEEEGGGTEEEEEETTT
T ss_pred -eeeecccc-----cccccccC-cccceeeecccccceeEEEeecc
Confidence 11111232 23456888 67754 45577889999999887
No 30
>KOG1539|consensus
Probab=95.98 E-value=0.33 Score=55.44 Aligned_cols=201 Identities=15% Similarity=0.184 Sum_probs=135.5
Q ss_pred ceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEE-cCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731 126 LTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQ-LKEKTDYTEESKFSNMVVDVTSANCDNAFLY 204 (494)
Q Consensus 126 lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~-lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY 204 (494)
-.++..+.++.||.--++=.... .|-+||+++|...++|- =|. .++-+.++++|.+ ...-
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G--------~Id~fNmQSGi~r~sf~~~~a-----h~~~V~gla~D~~------n~~~ 508 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKG--------TIDRFNMQSGIHRKSFGDSPA-----HKGEVTGLAVDGT------NRLL 508 (910)
T ss_pred CcceEEEEEeccCceEEEeccCC--------eEEEEEcccCeeecccccCcc-----ccCceeEEEecCC------CceE
Confidence 36788888999998887766666 78999999999988883 122 5666778888753 3345
Q ss_pred EeeCCCCeEEEEEccCCc---eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEE
Q psy731 205 IADSGHNHIVVYNYRTND---SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFL 281 (494)
Q Consensus 205 ItDs~~~~iIVyd~~~~~---~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~ 281 (494)
||=...+-+-.||+.++- .||+. .|-...+
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l~-----------------------------------------------~~~~~iv 541 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRLG-----------------------------------------------SSITGIV 541 (910)
T ss_pred EEccCcceEEEEecCCcceeeeeccC-----------------------------------------------CCcceee
Confidence 555555667777776655 22221 1222233
Q ss_pred EEecC-------CCCeEEEEEcCCCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC
Q psy731 282 YIADS-------GHNHIVVYNYRTNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA 353 (494)
Q Consensus 282 YI~D~-------~~~gliVydl~~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls 353 (494)
|.-++ ....|+|||..|.+.-|-.- ++ +-|.-++.||+ +|||--.+|-
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~--------------------nritd~~FS~D----grWlisasmD 597 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG--------------------NRITDMTFSPD----GRWLISASMD 597 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc--------------------cceeeeEeCCC----CcEEEEeecC
Confidence 33222 35689999998877655421 11 11666999998 4999999995
Q ss_pred Cc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCCccccccceee
Q psy731 354 ST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRGEEYNEKSMGL 431 (494)
Q Consensus 354 s~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~ 431 (494)
|+ +.|.++|..|-|.=+- + ..+..+.+.| +| .|--+-+.+++|+-|.-.. -|...+++.
T Consensus 598 ~tIr~wDlpt~~lID~~~v------------d----~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNks--lF~~vs~r~ 658 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLLV------------D----SPCTSLSFSP-NGDFLATVHVDQNGIYLWSNKS--LFKSVSTRA 658 (910)
T ss_pred CcEEEEeccCcceeeeEec------------C----CcceeeEECC-CCCEEEEEEecCceEEEEEchh--Hheeccccc
Confidence 55 9999999999664321 1 2367788884 55 7777788899999999877 676555554
Q ss_pred eeec
Q psy731 432 VAED 435 (494)
Q Consensus 432 v~~d 435 (494)
+..|
T Consensus 659 ~~~~ 662 (910)
T KOG1539|consen 659 IPAD 662 (910)
T ss_pred cCcc
Confidence 4443
No 31
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.70 E-value=0.87 Score=51.34 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=72.6
Q ss_pred eeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcC---CCcC-ccccccceEEecccCCCCCCCeEEeeCCCCeEEEe
Q psy731 331 IHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQN---RSLD-FSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYA 406 (494)
Q Consensus 331 i~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~---~~~~-~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~ 406 (494)
-.|+++||| ++++|-.-..|...--|+++-+++ ..+. .+.+..++++ |. | + --.++| .+|+.|.+
T Consensus 323 PHGV~vSPD----GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-Gl-G--P--LHTaFD-g~G~ayts 391 (635)
T PRK02888 323 PHGVNTSPD----GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GL-G--P--LHTAFD-GRGNAYTT 391 (635)
T ss_pred ccceEECCC----CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CC-C--c--ceEEEC-CCCCEEEe
Confidence 567999998 489999888888777777776653 2221 2223344443 42 2 2 345789 78999999
Q ss_pred ccCCCeEEEEeCCCCc-cccccceeeeeecCCeEec-ccceEE------cCCceEEEEecCchh
Q psy731 407 LLVKSGVGCWNTFRGE-EYNEKSMGLVAEDNATLIY-PSDIRV------DRTGVLWVLSNKLPV 462 (494)
Q Consensus 407 ~~~~~aI~~w~~~~~~-~~~~~~~~~v~~d~~~l~~-pd~~~i------d~~g~Lwvlsnrl~~ 462 (494)
+.-.++|..||.++.. .|+-+...-|.+- -...| |-.+.. +.+|.-.|.-|++-+
T Consensus 392 lf~dsqv~kwn~~~a~~~~~g~~~~~v~~k-~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~sk 454 (635)
T PRK02888 392 LFLDSQIVKWNIEAAIRAYKGEKVDPIVQK-LDVHYQPGHNHASMGETKEADGKWLVSLNKFSK 454 (635)
T ss_pred EeecceeEEEehHHHHHHhccccCCcceec-ccCCCccceeeecCCCcCCCCCCEEEEcccccc
Confidence 9999999999987510 1222222222211 11111 223333 678865566788764
No 32
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.65 E-value=2.1 Score=40.75 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=43.0
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCc-eeEE
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTND-SHII 226 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~-~~rv 226 (494)
.|.++|+++++++-++.+.++ ..+.....+. .++++|++ +..+.|+.+|..+|+ .|++
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~----~~~~~~~~~~-------~~~~v~~~-~~~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPG----IGGPVATAVP-------DGGRVYVA-SGDGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSS----CSSEEETEEE-------ETTEEEEE-ETTSEEEEEETTTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCC----CCCccceEEE-------eCCEEEEE-cCCCEEEEEECCCCCEEEEe
Confidence 688999999999999987441 2333333333 37889999 477899999997777 6777
No 33
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.52 E-value=1.3 Score=47.28 Aligned_cols=87 Identities=26% Similarity=0.267 Sum_probs=48.6
Q ss_pred CCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeee-cCCeEe-cccceEE----cCCceEEEEe---c
Q psy731 388 GSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAE-DNATLI-YPSDIRV----DRTGVLWVLS---N 458 (494)
Q Consensus 388 ~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~-d~~~l~-~pd~~~i----d~~g~Lwvls---n 458 (494)
.+|+-|+++|.++|.||+++-. -+|++++.+- .-. ..-.++.. +.+.|. =..||.+ +.+|||.+.+ |
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep--~~~-~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEP--EGG-NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT-TEEEEEESSC--CC--S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred CCcceEEEEecccCCEEEecCc-cEEEEEecCC--CCC-CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 3689999999999999999876 5899998762 110 11122322 212221 1345565 3456888876 5
Q ss_pred CchhhhcCCCCCCcccEEEE
Q psy731 459 KLPVFLYSKLKPEDINVRIF 478 (494)
Q Consensus 459 rl~~~~~~~~~~~~~nfrI~ 478 (494)
.+..|-....+.-...|+|-
T Consensus 283 sf~Vy~r~~~~~~~g~f~i~ 302 (381)
T PF02333_consen 283 SFAVYDREGPNAYVGSFRIG 302 (381)
T ss_dssp EEEEEESSTT--EEEEEEEE
T ss_pred eEEEEecCCCCcccceEEec
Confidence 56666533333334566664
No 34
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.49 E-value=0.059 Score=56.35 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=57.5
Q ss_pred CCCeEEEE-eCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEE
Q psy731 136 PCDRLWAL-DSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIV 214 (494)
Q Consensus 136 ~~~~Lwvl-D~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iI 214 (494)
..+||+|| +.|....-...+-+|++||++|++.++|++++.. ..+|.|- +.+...+|.++.+...|.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--------~~Si~Vs----qd~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP--------IDSIAVS----QDDKPLLYALSAGDGTLD 315 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--------ESEEEEE----SSSS-EEEEEETTTTEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc--------cceEEEc----cCCCcEEEEEcCCCCeEE
Confidence 68899998 5554322234556999999999999999998761 3356663 457889999999999999
Q ss_pred EEEccCCceeEE
Q psy731 215 VYNYRTNDSHII 226 (494)
Q Consensus 215 Vyd~~~~~~~rv 226 (494)
|||..+|+.-|.
T Consensus 316 v~D~~tGk~~~~ 327 (342)
T PF06433_consen 316 VYDAATGKLVRS 327 (342)
T ss_dssp EEETTT--EEEE
T ss_pred EEeCcCCcEEee
Confidence 999999988776
No 35
>KOG1520|consensus
Probab=95.45 E-value=0.46 Score=50.28 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=82.6
Q ss_pred EEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEE
Q psy731 202 FLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFL 281 (494)
Q Consensus 202 ~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~ 281 (494)
-+||+|+- .+|.+.+.+.+.+-.+..+ ..-++-.+++++.||. ++-+
T Consensus 128 dL~VaDAY-lGL~~V~p~g~~a~~l~~~--------------------------~~G~~~kf~N~ldI~~------~g~v 174 (376)
T KOG1520|consen 128 DLYVADAY-LGLLKVGPEGGLAELLADE--------------------------AEGKPFKFLNDLDIDP------EGVV 174 (376)
T ss_pred eEEEEecc-eeeEEECCCCCcceecccc--------------------------ccCeeeeecCceeEcC------CCeE
Confidence 56888875 5788889998887666221 1112334667777873 5789
Q ss_pred EEecCCC-CeE--EEEEcCCC-cEEEEecCCcccCCCCcceE--EcCEEeeeecceeeeeeccCCCCCceeEEE-eeCCC
Q psy731 282 YIADSGH-NHI--VVYNYRTN-DSHIIHHNYLHFDPLFGDFT--IGGVNFQWQTGIHGMSLSPLTRDNFRVMYF-HPLAS 354 (494)
Q Consensus 282 YI~D~~~-~gl--iVydl~~~-~swrv~~~~~~~dP~~~~~~--v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf-~plss 354 (494)
|++|+.. +.. +++++-.+ .+= +.|++||.--.-+ .+|..| .+|+||||++ +-.|+- ++|+-
T Consensus 175 yFTDSSsk~~~rd~~~a~l~g~~~G----Rl~~YD~~tK~~~VLld~L~F-----~NGlaLS~d~---sfvl~~Et~~~r 242 (376)
T KOG1520|consen 175 YFTDSSSKYDRRDFVFAALEGDPTG----RLFRYDPSTKVTKVLLDGLYF-----PNGLALSPDG---SFVLVAETTTAR 242 (376)
T ss_pred EEeccccccchhheEEeeecCCCcc----ceEEecCcccchhhhhhcccc-----cccccCCCCC---CEEEEEeeccce
Confidence 9999874 222 33333322 221 2456666543222 244444 6889999973 333443 34433
Q ss_pred cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEec
Q psy731 355 TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYAL 407 (494)
Q Consensus 355 ~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~ 407 (494)
-+-|.|+..-- ..+ +..- .|.++-.+-+-.| ++|...++.
T Consensus 243 i~rywi~g~k~-----gt~------EvFa-~~LPG~PDNIR~~-~~G~fWVal 282 (376)
T KOG1520|consen 243 IKRYWIKGPKA-----GTS------EVFA-EGLPGYPDNIRRD-STGHFWVAL 282 (376)
T ss_pred eeeeEecCCcc-----Cch------hhHh-hcCCCCCcceeEC-CCCCEEEEE
Confidence 35555543211 111 1111 2224556778888 888887777
No 36
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=95.22 E-value=0.046 Score=46.55 Aligned_cols=55 Identities=11% Similarity=0.285 Sum_probs=37.4
Q ss_pred eEEeeCCCCeEEEeccCC-----------------CeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCce-EE
Q psy731 393 ASSLDEETGVIFYALLVK-----------------SGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGV-LW 454 (494)
Q Consensus 393 g~~~D~~~G~ly~~~~~~-----------------~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~-Lw 454 (494)
++++++++|.|||++.+. ..+.+|||.++ ...+|.. .|.||+|+.+.+|+. |.
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~------~~~vl~~---~L~fpNGVals~d~~~vl 72 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK------ETTVLLD---GLYFPNGVALSPDESFVL 72 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT------EEEEEEE---EESSEEEEEE-TTSSEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC------eEEEehh---CCCccCeEEEcCCCCEEE
Confidence 578884459999998753 46899999883 3456654 499999999999886 55
Q ss_pred EE
Q psy731 455 VL 456 (494)
Q Consensus 455 vl 456 (494)
|.
T Consensus 73 v~ 74 (89)
T PF03088_consen 73 VA 74 (89)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 37
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.62 E-value=1.3 Score=46.63 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=46.8
Q ss_pred CCeEEeeCCCCeEEEeccCC-------------------CeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCc
Q psy731 391 SGASSLDEETGVIFYALLVK-------------------SGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTG 451 (494)
Q Consensus 391 s~g~~~D~~~G~ly~~~~~~-------------------~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g 451 (494)
..+++++ .+|.||++.-.. .+|.+++++++ .+++++. .++-|-|+.++++|
T Consensus 126 ~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~------~~e~~a~---G~rnp~Gl~~d~~G 195 (367)
T TIGR02604 126 LNSLAWG-PDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG------KLRVVAH---GFQNPYGHSVDSWG 195 (367)
T ss_pred ccCceEC-CCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC------eEEEEec---CcCCCccceECCCC
Confidence 5689999 689999977632 46899999883 3566664 37899999999999
Q ss_pred eEEEEecC
Q psy731 452 VLWVLSNK 459 (494)
Q Consensus 452 ~Lwvlsnr 459 (494)
.||++.|.
T Consensus 196 ~l~~tdn~ 203 (367)
T TIGR02604 196 DVFFCDND 203 (367)
T ss_pred CEEEEccC
Confidence 99998763
No 38
>KOG1520|consensus
Probab=94.50 E-value=0.57 Score=49.59 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=106.7
Q ss_pred ccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCC
Q psy731 262 SKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTR 341 (494)
Q Consensus 262 s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~ 341 (494)
.+.-+|+.+.. .+-+||+| ...||.+.+..++.+=.+. =.++|++|.+.++ +.+++.
T Consensus 115 GRPLGl~f~~~-----ggdL~VaD-AYlGL~~V~p~g~~a~~l~------------~~~~G~~~kf~N~---ldI~~~-- 171 (376)
T KOG1520|consen 115 GRPLGIRFDKK-----GGDLYVAD-AYLGLLKVGPEGGLAELLA------------DEAEGKPFKFLND---LDIDPE-- 171 (376)
T ss_pred CCcceEEeccC-----CCeEEEEe-cceeeEEECCCCCcceecc------------ccccCeeeeecCc---eeEcCC--
Confidence 45667888763 34799999 5789999999998821111 1358889888655 778752
Q ss_pred CCceeEEEeeCCCcceE-eeechhhcCCC---c-CccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEE
Q psy731 342 DNFRVMYFHPLASTTEF-AVTTKVLQNRS---L-DFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCW 416 (494)
Q Consensus 342 ~g~r~LYf~plss~~ly-~V~T~~L~~~~---~-~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w 416 (494)
..+||.--|++.-. .+--++|..+. + .-+...+..+.+=+. ..-+.|+++.++...+-+++.....|.++
T Consensus 172 ---g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~--L~F~NGlaLS~d~sfvl~~Et~~~ri~ry 246 (376)
T KOG1520|consen 172 ---GVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDG--LYFPNGLALSPDGSFVLVAETTTARIKRY 246 (376)
T ss_pred ---CeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhc--ccccccccCCCCCCEEEEEeeccceeeee
Confidence 49999888874211 12222332211 1 001112334444432 35577899987777889999999999988
Q ss_pred eCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731 417 NTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS 457 (494)
Q Consensus 417 ~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls 457 (494)
-..+ +- ..+.++.+++-+ -+||-++.+.+|..||..
T Consensus 247 wi~g--~k-~gt~EvFa~~LP--G~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 247 WIKG--PK-AGTSEVFAEGLP--GYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred EecC--Cc-cCchhhHhhcCC--CCCcceeECCCCCEEEEE
Confidence 7776 31 123477777534 489999999999999985
No 39
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=94.08 E-value=0.26 Score=42.01 Aligned_cols=70 Identities=20% Similarity=0.420 Sum_probs=47.1
Q ss_pred cceEEEeecCCCCCcEEEEeeCCC-----------------CeEEEEEccCCceeEEecCccccCCCCCccccCCcccee
Q psy731 187 SNMVVDVTSANCDNAFLYIADSGH-----------------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEF 249 (494)
Q Consensus 187 ~d~vVD~~~~~c~~~~vYItDs~~-----------------~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~ 249 (494)
||+.|+- +.+.||+||+.. +.|+.||..+++..-+-
T Consensus 1 ndldv~~-----~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~---------------------- 53 (89)
T PF03088_consen 1 NDLDVDQ-----DTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL---------------------- 53 (89)
T ss_dssp -EEEE-T-----TT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE----------------------
T ss_pred CceeEec-----CCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh----------------------
Confidence 4566652 349999999943 47999999999886661
Q ss_pred eeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcC
Q psy731 250 FQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYR 297 (494)
Q Consensus 250 f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~ 297 (494)
..-.+.++|++.. ++.|+.|+..+.+.|..|=++
T Consensus 54 ---------~~L~fpNGVals~-----d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 54 ---------DGLYFPNGVALSP-----DESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp ---------EEESSEEEEEE-T-----TSSEEEEEEGGGTEEEEEESS
T ss_pred ---------hCCCccCeEEEcC-----CCCEEEEEeccCceEEEEEEe
Confidence 1123467888874 578999999988888888554
No 40
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.03 E-value=7.2 Score=40.37 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=38.6
Q ss_pred CCCEEEEEECCCCcEEEEEEcCCCccccccCCccceE-EEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE
Q psy731 154 QPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMV-VDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII 226 (494)
Q Consensus 154 ~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~v-VD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv 226 (494)
.||.|+-+++ +|+++|+++|+. +.|+- |.+. +++..-|+|-..++|.++-++.++....
T Consensus 106 ~p~~iVElt~-~GdlirtiPL~g---------~~DpE~Ieyi----g~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 106 KPAAIVELTK-EGDLIRTIPLTG---------FSDPETIEYI----GGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred CCceEEEEec-CCceEEEecccc---------cCChhHeEEe----cCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 4678887775 789999998866 22222 2221 3444456888888888887777765444
No 41
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.79 E-value=0.13 Score=37.47 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=35.4
Q ss_pred CeEEEeccCCC-eEEEEeCCCCccccccceeeeeecCCeEecccceEEcC
Q psy731 401 GVIFYALLVKS-GVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDR 449 (494)
Q Consensus 401 G~ly~~~~~~~-aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~ 449 (494)
|.||.++...+ .|.+-+.++ .+.++|+++ .|.+|.|+.+|.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dG------s~~~~vi~~--~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDG------SNRRTVISD--DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTS------TSEEEEEES--STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCC------CCeEEEEEC--CCCCcCEEEECC
Confidence 68999999999 999999998 367888875 389999999974
No 42
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.77 E-value=11 Score=40.25 Aligned_cols=177 Identities=9% Similarity=0.079 Sum_probs=90.2
Q ss_pred CCcEEEEeeCCC-CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731 199 DNAFLYIADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD 277 (494)
Q Consensus 199 ~~~~vYItDs~~-~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~ 277 (494)
++..+|+++... ..|.++|+.+|...++....- ....+.+. + -+
T Consensus 215 g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g-------------------------------~~~~~~~S--p--DG 259 (433)
T PRK04922 215 GKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-------------------------------INGAPSFS--P--DG 259 (433)
T ss_pred CCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC-------------------------------CccCceEC--C--CC
Confidence 567788876543 569999999998877732100 00011221 1 02
Q ss_pred CcEEEEecCC-CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeC-CC-
Q psy731 278 DAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPL-AS- 354 (494)
Q Consensus 278 ~~~~YI~D~~-~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pl-ss- 354 (494)
+..+|..+.. ...|.++|+++++..++.+.... ....+.||+ +++|+|..- .+
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~--------------------~~~~~~spD----G~~l~f~sd~~g~ 315 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGI--------------------DTEPTWAPD----GKSIYFTSDRGGR 315 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEECccCCCC--------------------ccceEECCC----CCEEEEEECCCCC
Confidence 3344554433 35799999999887766543110 112466776 367777542 22
Q ss_pred cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccC--CCeEEEEeCCCCccccccceeee
Q psy731 355 TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLV--KSGVGCWNTFRGEEYNEKSMGLV 432 (494)
Q Consensus 355 ~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~--~~aI~~w~~~~~~~~~~~~~~~v 432 (494)
..+|.++.+ ... . ..+..-|. .....+..|....|+|+... ...|..||..+|. ...+
T Consensus 316 ~~iy~~dl~---~g~-----~-~~lt~~g~-----~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~------~~~L 375 (433)
T PRK04922 316 PQIYRVAAS---GGS-----A-ERLTFQGN-----YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS------VRTL 375 (433)
T ss_pred ceEEEEECC---CCC-----e-EEeecCCC-----CccCEEECCCCCEEEEEECCCCceeEEEEECCCCC------eEEC
Confidence 256666421 111 0 11111111 12235666433466665433 2369999987741 2334
Q ss_pred eecCCeEecccceEEcCCce-EEEEec
Q psy731 433 AEDNATLIYPSDIRVDRTGV-LWVLSN 458 (494)
Q Consensus 433 ~~d~~~l~~pd~~~id~~g~-Lwvlsn 458 (494)
... . +.....+.++|. |++.++
T Consensus 376 t~~-~---~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 376 TPG-S---LDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CCC-C---CCCCceECCCCCEEEEEEe
Confidence 332 1 223445666664 555554
No 43
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=93.68 E-value=1.6 Score=44.39 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCCCCeEEeeCCCCeEEEeccCCCeEEEEeC
Q psy731 388 GSQSGASSLDEETGVIFYALLVKSGVGCWNT 418 (494)
Q Consensus 388 ~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~ 418 (494)
++|+.||..|.++|+||.++- .-||+.++.
T Consensus 204 ~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~A 233 (364)
T COG4247 204 PTQTEGMVADDETGFLYIAEE-DVAIWKYEA 233 (364)
T ss_pred CCcccceeeccccceEEEeec-cceeeeccc
Confidence 479999999989999999875 456666654
No 44
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.63 E-value=11 Score=39.66 Aligned_cols=115 Identities=15% Similarity=0.242 Sum_probs=70.3
Q ss_pred CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccc---cCCc-cceEEEeecCCCCCcEEEEeeCCCCe
Q psy731 137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTE---ESKF-SNMVVDVTSANCDNAFLYIADSGHNH 212 (494)
Q Consensus 137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~---~S~l-~d~vVD~~~~~c~~~~vYItDs~~~~ 212 (494)
.++|++.+... .|.++|.+|++++=+.+++.+.-... ...+ ..+++ .++.+|+.+. .+.
T Consensus 69 ~~~vy~~~~~g---------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-------~~~~v~v~~~-~g~ 131 (394)
T PRK11138 69 YNKVYAADRAG---------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-------AGGKVYIGSE-KGQ 131 (394)
T ss_pred CCEEEEECCCC---------eEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-------ECCEEEEEcC-CCE
Confidence 66888876432 68999999999988887765100000 0011 23455 3578999874 457
Q ss_pred EEEEEccCCc-eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeE
Q psy731 213 IVVYNYRTND-SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHI 291 (494)
Q Consensus 213 iIVyd~~~~~-~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gl 291 (494)
|..+|.++|+ .|+..-. +......++. +..+|+.. ....|
T Consensus 132 l~ald~~tG~~~W~~~~~-------------------------------~~~~ssP~v~-------~~~v~v~~-~~g~l 172 (394)
T PRK11138 132 VYALNAEDGEVAWQTKVA-------------------------------GEALSRPVVS-------DGLVLVHT-SNGML 172 (394)
T ss_pred EEEEECCCCCCcccccCC-------------------------------CceecCCEEE-------CCEEEEEC-CCCEE
Confidence 9999998876 6776210 0011222332 24567764 34568
Q ss_pred EEEEcCCCc-EEEEecC
Q psy731 292 VVYNYRTND-SHIIHHN 307 (494)
Q Consensus 292 iVydl~~~~-swrv~~~ 307 (494)
+.+|.++++ .|++...
T Consensus 173 ~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 173 QALNESDGAVKWTVNLD 189 (394)
T ss_pred EEEEccCCCEeeeecCC
Confidence 999998766 6888653
No 45
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.39 E-value=12 Score=39.58 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=44.5
Q ss_pred CCcEEEEeeCC-CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731 199 DNAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD 277 (494)
Q Consensus 199 ~~~~vYItDs~-~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~ 277 (494)
++..+|+++.. ...|.++|+.+|...++.+..- ....+... + + +
T Consensus 210 G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g-------------------------------~~~~~~~S--p-D-G 254 (430)
T PRK00178 210 GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG-------------------------------LNGAPAWS--P-D-G 254 (430)
T ss_pred CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC-------------------------------CcCCeEEC--C-C-C
Confidence 56677888764 4579999999998887732000 00001111 1 0 2
Q ss_pred CcEEEEecCC-CCeEEEEEcCCCcEEEEec
Q psy731 278 DAFLYIADSG-HNHIVVYNYRTNDSHIIHH 306 (494)
Q Consensus 278 ~~~~YI~D~~-~~gliVydl~~~~swrv~~ 306 (494)
+..+|..+.. ...|.++|+++++..++.+
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEccc
Confidence 3455555533 3579999999998877754
No 46
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.31 E-value=7.5 Score=41.57 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=23.5
Q ss_pred CCCCcEEEEeeC-CCCeEEEEEccCCceeEEe
Q psy731 197 NCDNAFLYIADS-GHNHIVVYNYRTNDSHIIH 227 (494)
Q Consensus 197 ~c~~~~vYItDs-~~~~iIVyd~~~~~~~rv~ 227 (494)
.+++..+|.+|. +...|.++|+.++...++.
T Consensus 299 pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 299 PDGSQIVFESDRSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CCCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence 345667788875 4467999999999888884
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.23 E-value=6.9 Score=36.14 Aligned_cols=202 Identities=12% Similarity=0.174 Sum_probs=105.7
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCC
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDP 235 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp 235 (494)
.|..||+.+++.++.+.... +.+..+... .+..+.++-...+.|.+||+.+++.... ..
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~-------~~i~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------- 133 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHT-------SYVSSVAFS------PDGRILSSSSRDKTIKVWDVETGKCLTTLRG------- 133 (289)
T ss_pred eEEEEEcCcccceEEEeccC-------CcEEEEEEc------CCCCEEEEecCCCeEEEEECCCcEEEEEecc-------
Confidence 57788888776666554222 233333332 1234445555678899999986654333 10
Q ss_pred CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731 236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF 315 (494)
Q Consensus 236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~ 315 (494)
.......+.+.. ++.+++... .+..|.+||+++++..+....
T Consensus 134 ------------------------~~~~i~~~~~~~-----~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~-------- 175 (289)
T cd00200 134 ------------------------HTDWVNSVAFSP-----DGTFVASSS-QDGTIKLWDLRTGKCVATLTG-------- 175 (289)
T ss_pred ------------------------CCCcEEEEEEcC-----cCCEEEEEc-CCCcEEEEEccccccceeEec--------
Confidence 011233344432 134555543 355688999886553222110
Q ss_pred cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEe-cccCCCCCCCe
Q psy731 316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVM-GSRGTGSQSGA 393 (494)
Q Consensus 316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~-G~~G~~~qs~g 393 (494)
-...+..++++|+ ++.+++....+. .+|.+.+..+ +..+ +.. .....
T Consensus 176 -----------~~~~i~~~~~~~~----~~~l~~~~~~~~i~i~d~~~~~~-------------~~~~~~~~---~~i~~ 224 (289)
T cd00200 176 -----------HTGEVNSVAFSPD----GEKLLSSSSDGTIKLWDLSTGKC-------------LGTLRGHE---NGVNS 224 (289)
T ss_pred -----------CccccceEEECCC----cCEEEEecCCCcEEEEECCCCce-------------ecchhhcC---CceEE
Confidence 0123666888875 256777655442 4444433111 1111 222 23456
Q ss_pred EEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEE
Q psy731 394 SSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVL 456 (494)
Q Consensus 394 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvl 456 (494)
+..+ .++.++++.-....|..|+..++.+ ...+... . ..+.++.+.+++.+.++
T Consensus 225 ~~~~-~~~~~~~~~~~~~~i~i~~~~~~~~-----~~~~~~~-~--~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 225 VAFS-PDGYLLASGSEDGTIRVWDLRTGEC-----VQTLSGH-T--NSVTSLAWSPDGKRLAS 278 (289)
T ss_pred EEEc-CCCcEEEEEcCCCcEEEEEcCCcee-----EEEcccc-C--CcEEEEEECCCCCEEEE
Confidence 7888 4588888777789999999875312 1222211 1 13456667666544443
No 48
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.00 E-value=9.3 Score=40.88 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=22.0
Q ss_pred CCCcEEEEeeCC-CCeEEEEEccCCceeEE
Q psy731 198 CDNAFLYIADSG-HNHIVVYNYRTNDSHII 226 (494)
Q Consensus 198 c~~~~vYItDs~-~~~iIVyd~~~~~~~rv 226 (494)
+++..+|.+|.. ...|.++|+.++...|+
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~g~~~~l 331 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASGGSAERL 331 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 356677788754 45799999999888777
No 49
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.73 E-value=2.5 Score=45.88 Aligned_cols=154 Identities=16% Similarity=0.214 Sum_probs=73.6
Q ss_pred CCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeec-CCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCcccc
Q psy731 155 PPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTS-ANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHF 233 (494)
Q Consensus 155 ~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~-~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~ 233 (494)
.-.|+.||+++.+++++++|+++ . -+...+|- -+....+.|+.=+-...|..+=-+++-.|....----|
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~-----g----~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEE-----G----QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TT-----E----EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred cCeEEEEECCCCcEeeEEecCCC-----C----CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 45899999999999999999972 1 12334441 34467888888777777777766556667773311101
Q ss_pred CCCCCccccCCccceeeeecccccccc----cccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCc
Q psy731 234 DPLFGDFTIGGEYSEFFQLKEKTDYTE----ESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYL 309 (494)
Q Consensus 234 dp~~~~f~i~g~~~~~f~l~~~~~~~~----~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~ 309 (494)
.+ .-|-..|+ +.++. ..+.++|.+-. ++.|+|++.-...-+--||..+-.-=|..
T Consensus 292 ~~----------~v~~~~lp--~ml~~~~~~P~LitDI~iSl-----DDrfLYvs~W~~GdvrqYDISDP~~Pkl~---- 350 (461)
T PF05694_consen 292 AK----------KVEGWILP--EMLKPFGAVPPLITDILISL-----DDRFLYVSNWLHGDVRQYDISDPFNPKLV---- 350 (461)
T ss_dssp -E----------E--SS-----GGGGGG-EE------EEE-T-----TS-EEEEEETTTTEEEEEE-SSTTS-EEE----
T ss_pred Cc----------ccCccccc--ccccccccCCCceEeEEEcc-----CCCEEEEEcccCCcEEEEecCCCCCCcEE----
Confidence 10 00000111 01111 13445555543 68999999877777889998864322211
Q ss_pred ccCCCCcceEEc------------CEEeeeecceeeeeeccCCCCCceeEEEe
Q psy731 310 HFDPLFGDFTIG------------GVNFQWQTGIHGMSLSPLTRDNFRVMYFH 350 (494)
Q Consensus 310 ~~dP~~~~~~v~------------G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~ 350 (494)
++..++ |++ +..|-..|.||-| ++.||++
T Consensus 351 ------gqv~lGG~~~~~~~~~v~g~~--l~GgPqMvqlS~D----GkRlYvT 391 (461)
T PF05694_consen 351 ------GQVFLGGSIRKGDHPVVKGKR--LRGGPQMVQLSLD----GKRLYVT 391 (461)
T ss_dssp ------EEEE-BTTTT-B--TTS--------S----EEE-TT----SSEEEEE
T ss_pred ------eEEEECcEeccCCCccccccc--cCCCCCeEEEccC----CeEEEEE
Confidence 222222 333 3356777999976 3899993
No 50
>KOG0291|consensus
Probab=92.71 E-value=23 Score=40.84 Aligned_cols=244 Identities=15% Similarity=0.197 Sum_probs=147.8
Q ss_pred cccccc----c-CCCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceE
Q psy731 116 WESNVR----E-ARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMV 190 (494)
Q Consensus 116 ~~~n~~----~-~~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~v 190 (494)
|+|+.. . -.++-++..+..-++|.+.+- |..+ + |+-+||...+--+.+|.=+ +|...-+.
T Consensus 335 weWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT--G~eD-g-----KVKvWn~~SgfC~vTFteH-------ts~Vt~v~ 399 (893)
T KOG0291|consen 335 WEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT--GAED-G-----KVKVWNTQSGFCFVTFTEH-------TSGVTAVQ 399 (893)
T ss_pred EEeeccceeeeccccccceeeEEECCCCcEEEe--ccCC-C-----cEEEEeccCceEEEEeccC-------CCceEEEE
Confidence 778764 1 224666666777778877663 4432 1 7889999999988777533 44444444
Q ss_pred EEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEe
Q psy731 191 VDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVD 270 (494)
Q Consensus 191 VD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD 270 (494)
+- .++++-++=+-.+.+=.||+.+.+-.|= ||-+ +...|.-++||
T Consensus 400 f~------~~g~~llssSLDGtVRAwDlkRYrNfRT-----------------------ft~P------~p~QfscvavD 444 (893)
T KOG0291|consen 400 FT------ARGNVLLSSSLDGTVRAWDLKRYRNFRT-----------------------FTSP------EPIQFSCVAVD 444 (893)
T ss_pred EE------ecCCEEEEeecCCeEEeeeecccceeee-----------------------ecCC------CceeeeEEEEc
Confidence 43 4677888888888888888888776665 3333 33457888999
Q ss_pred eecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEe--cC----CcccCCCCcce-------EE----------cCEEeee
Q psy731 271 VTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIH--HN----YLHFDPLFGDF-------TI----------GGVNFQW 327 (494)
Q Consensus 271 ~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~--~~----~~~~dP~~~~~-------~v----------~G~~f~~ 327 (494)
.. +-.+...+.....|.|||++||+---+. |. ...++|....+ || .-++++.
T Consensus 445 ~s-----GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i 519 (893)
T KOG0291|consen 445 PS-----GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI 519 (893)
T ss_pred CC-----CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee
Confidence 53 4566677777899999999999988885 53 11233432211 11 1133444
Q ss_pred ecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhc---CCCc--Ccccccc-ceEEe-cccCCCCCCCeEEeeCC
Q psy731 328 QTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQ---NRSL--DFSRSNF-DFKVM-GSRGTGSQSGASSLDEE 399 (494)
Q Consensus 328 ~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~---~~~~--~~~~~~~-~v~~~-G~~G~~~qs~g~~~D~~ 399 (494)
.--+.+++.+|++ +.|-...|.|. ..|-+...+.. +... ....... .+... ..+| +. -..+.+. .
T Consensus 520 ~sdvl~vsfrPdG----~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~-K~-Ftti~yS-a 592 (893)
T KOG0291|consen 520 RSDVLAVSFRPDG----KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKG-KT-FTTICYS-A 592 (893)
T ss_pred ccceeEEEEcCCC----CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccC-Cc-eEEEEEc-C
Confidence 4567888888874 66766666654 55555443332 1110 1111111 11111 1122 11 2345666 7
Q ss_pred CCeEEEeccCCCeEEEEeCCCC
Q psy731 400 TGVIFYALLVKSGVGCWNTFRG 421 (494)
Q Consensus 400 ~G~ly~~~~~~~aI~~w~~~~~ 421 (494)
+|...++--+.+.|-.++...+
T Consensus 593 DG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 593 DGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred CCCEEEecCCcccEEEEECchh
Confidence 8888888888888888888764
No 51
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.64 E-value=16 Score=38.97 Aligned_cols=29 Identities=10% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCcEEEEeeC-CCCeEEEEEccCCceeEEe
Q psy731 199 DNAFLYIADS-GHNHIVVYNYRTNDSHIIH 227 (494)
Q Consensus 199 ~~~~vYItDs-~~~~iIVyd~~~~~~~rv~ 227 (494)
++.-+|+++. +...|.++|+.+|...++.
T Consensus 213 G~~lay~s~~~g~~~i~~~dl~~g~~~~l~ 242 (435)
T PRK05137 213 RQEITYMSYANGRPRVYLLDLETGQRELVG 242 (435)
T ss_pred CCEEEEEEecCCCCEEEEEECCCCcEEEee
Confidence 5677888875 4468999999999887773
No 52
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=1.5 Score=45.41 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=52.9
Q ss_pred cCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccc
Q psy731 183 ESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEES 262 (494)
Q Consensus 183 ~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s 262 (494)
.+.++|++| .+.|||+|| +..+|.++|..+...=+.. |.+++ +.
T Consensus 86 ~~l~~Dv~v-------se~yvyvad-~ssGL~IvDIS~P~sP~~~----------~~lnt------------------~g 129 (370)
T COG5276 86 RDLFADVRV-------SEEYVYVAD-WSSGLRIVDISTPDSPTLI----------GFLNT------------------DG 129 (370)
T ss_pred hhhhheeEe-------cccEEEEEc-CCCceEEEeccCCCCccee----------ccccC------------------Cc
Confidence 346777777 689999999 7788999998877664431 11111 01
Q ss_pred cceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEe
Q psy731 263 KFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIH 305 (494)
Q Consensus 263 ~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~ 305 (494)
+- --|++ ...+||++|. ++|++++|+.+-.+=.+.
T Consensus 130 ya--ygv~v-----sGn~aYVadl-ddgfLivdvsdpssP~la 164 (370)
T COG5276 130 YA--YGVYV-----SGNYAYVADL-DDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred eE--EEEEe-----cCCEEEEeec-cCcEEEEECCCCCCceee
Confidence 11 12444 3679999996 789999999876654443
No 53
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.90 E-value=21 Score=38.48 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCCCcEEEEeeCCC-CeEEEEEccCCceeEEe
Q psy731 197 NCDNAFLYIADSGH-NHIVVYNYRTNDSHIIH 227 (494)
Q Consensus 197 ~c~~~~vYItDs~~-~~iIVyd~~~~~~~rv~ 227 (494)
.+++..+|++|..+ ..|.++|+.+|...|+.
T Consensus 286 PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 286 EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 45677888888655 48999999999998883
No 54
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.87 E-value=9.2 Score=39.69 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=38.4
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCc-eeEE
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTND-SHII 226 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~-~~rv 226 (494)
.|.++|+++++++-+..++. ...+++ .++++|+++ ..+.|.++|.++|+ .|+.
T Consensus 252 ~l~a~d~~tG~~~W~~~~~~---------~~~p~~-------~~~~vyv~~-~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 252 RVAALDLRSGRVLWKRDASS---------YQGPAV-------DDNRLYVTD-ADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EEEEEECCCCcEEEeeccCC---------ccCceE-------eCCEEEEEC-CCCeEEEEECCCCcEEEcc
Confidence 68899999999887665432 234555 357899986 45789999999886 4655
No 55
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.80 E-value=22 Score=38.50 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=57.2
Q ss_pred CCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-CCeEEEEEccCCceeEEecCccc
Q psy731 154 QPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLH 232 (494)
Q Consensus 154 ~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-~~~iIVyd~~~~~~~rv~~~~~~ 232 (494)
+.+.|..+|+.+++..+.-.++. ....++. ...++..+|.++.. ...|.++|+.++...++..+..
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g--------~~~~~~w----SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~- 306 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPG--------INGAPRF----SPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA- 306 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCC--------CcCCeeE----CCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC-
Confidence 34567777777765433222221 1112333 22345566665543 3469999999999888843211
Q ss_pred cCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC-CCCeEEEEEcCCCcEEEEe
Q psy731 233 FDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS-GHNHIVVYNYRTNDSHIIH 305 (494)
Q Consensus 233 ~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~-~~~gliVydl~~~~swrv~ 305 (494)
....+... + .++..+|.++. +...|.++|+++++.-++.
T Consensus 307 ------------------------------~~~~p~wS--p--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 307 ------------------------------IDTEPSWH--P--DGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred ------------------------------CccceEEC--C--CCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 00011111 1 12445666664 3467999999988876665
No 56
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.59 E-value=21 Score=38.29 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=36.6
Q ss_pred CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-CCeEEEEEccCCceeEEe
Q psy731 156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-HNHIVVYNYRTNDSHIIH 227 (494)
Q Consensus 156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-~~~iIVyd~~~~~~~rv~ 227 (494)
+.|..+|++++++.+. .. ..+....+.. ..+++..+|.+|.. ...|.++|+.++...+++
T Consensus 267 ~~I~~~d~~tg~~~~l---t~-----~~~~~~~~~w----SPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 267 LNLYVMDLASGQIRQV---TD-----GRSNNTEPTW----FPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred cEEEEEECCCCCEEEc---cC-----CCCCcCceEE----CCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 4566677777665431 11 2222233333 23466778999864 457999999999888873
No 57
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.55 E-value=13 Score=40.66 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=29.5
Q ss_pred CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCC
Q psy731 124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKE 176 (494)
Q Consensus 124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~ 176 (494)
++|...-+|....+++|||..-+.. +|.+++..+++......+|.
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G--------~I~~v~~~~~~~~~~~~l~~ 71 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATG--------KILRVNPETGEVKVVFTLPE 71 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCC--------EEEEEeCCCCceeeeecCCc
Confidence 4677777888888889998875433 57777766554333334554
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.43 E-value=13 Score=35.24 Aligned_cols=196 Identities=15% Similarity=0.103 Sum_probs=105.2
Q ss_pred CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEE
Q psy731 136 PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVV 215 (494)
Q Consensus 136 ~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIV 215 (494)
..++|++.+. . ..|+++|+.|++++-++.++... ...+.+ .++.+|+.... +.|+.
T Consensus 35 ~~~~v~~~~~-~--------~~l~~~d~~tG~~~W~~~~~~~~-------~~~~~~-------~~~~v~v~~~~-~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASG-D--------GNLYALDAKTGKVLWRFDLPGPI-------SGAPVV-------DGGRVYVGTSD-GSLYA 90 (238)
T ss_dssp ETTEEEEEET-T--------SEEEEEETTTSEEEEEEECSSCG-------GSGEEE-------ETTEEEEEETT-SEEEE
T ss_pred eCCEEEEEcC-C--------CEEEEEECCCCCEEEEeeccccc-------cceeee-------cccccccccce-eeeEe
Confidence 4678888852 2 28999999999999999986621 111344 35677887743 39999
Q ss_pred EEccCCc-eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEE
Q psy731 216 YNYRTND-SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVY 294 (494)
Q Consensus 216 yd~~~~~-~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVy 294 (494)
+|..+|+ .|++..... +... ......+... +..+|+... ...|+.+
T Consensus 91 ~d~~tG~~~W~~~~~~~------------------------~~~~---~~~~~~~~~~-----~~~~~~~~~-~g~l~~~ 137 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSS------------------------PPAG---VRSSSSPAVD-----GDRLYVGTS-SGKLVAL 137 (238)
T ss_dssp EETTTSCEEEEEEE-SS------------------------CTCS---TB--SEEEEE-----TTEEEEEET-CSEEEEE
T ss_pred cccCCcceeeeeccccc------------------------cccc---cccccCceEe-----cCEEEEEec-cCcEEEE
Confidence 9977665 566421110 0000 1111222221 355677654 6789999
Q ss_pred EcCCCcE-EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCcc
Q psy731 295 NYRTNDS-HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFS 373 (494)
Q Consensus 295 dl~~~~s-wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~ 373 (494)
|.++++. |+..- ... +... ++.....+.+=.+.. + ..+|...-.+. ++++. ++...
T Consensus 138 d~~tG~~~w~~~~-~~~--~~~~-------~~~~~~~~~~~~~~~----~-~~v~~~~~~g~-~~~~d---~~tg~---- 194 (238)
T PF13360_consen 138 DPKTGKLLWKYPV-GEP--RGSS-------PISSFSDINGSPVIS----D-GRVYVSSGDGR-VVAVD---LATGE---- 194 (238)
T ss_dssp ETTTTEEEEEEES-STT---SS---------EEEETTEEEEEECC----T-TEEEEECCTSS-EEEEE---TTTTE----
T ss_pred ecCCCcEEEEeec-CCC--CCCc-------ceeeecccccceEEE----C-CEEEEEcCCCe-EEEEE---CCCCC----
Confidence 9998875 55533 111 1011 111111111222211 1 27888776663 44441 11111
Q ss_pred ccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731 374 RSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG 421 (494)
Q Consensus 374 ~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~ 421 (494)
+.+ ++-. ....+. .....+.||++. ....|.|||..+|
T Consensus 195 ------~~w-~~~~-~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 195 ------KLW-SKPI-SGIYSL-PSVDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp ------EEE-EECS-S-ECEC-EECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred ------EEE-EecC-CCccCC-ceeeCCEEEEEe-CCCEEEEEECCCC
Confidence 112 2100 112221 233688999999 8999999999885
No 59
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.36 E-value=24 Score=38.15 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=43.7
Q ss_pred CCcEEEEeeCC-CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731 199 DNAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD 277 (494)
Q Consensus 199 ~~~~vYItDs~-~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~ 277 (494)
++..+|+++.. ...|.++|+.+|...++.+.. .. ....... + + +
T Consensus 229 G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-----------------------------g~--~~~~~wS--P-D-G 273 (448)
T PRK04792 229 GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-----------------------------GI--NGAPRFS--P-D-G 273 (448)
T ss_pred CCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-----------------------------CC--cCCeeEC--C-C-C
Confidence 56677887653 457999999999887773200 00 0011111 1 1 2
Q ss_pred CcEEEEecCC-CCeEEEEEcCCCcEEEEec
Q psy731 278 DAFLYIADSG-HNHIVVYNYRTNDSHIIHH 306 (494)
Q Consensus 278 ~~~~YI~D~~-~~gliVydl~~~~swrv~~ 306 (494)
+.++|..+.. ...|.++|+++++..++..
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITR 303 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECcc
Confidence 3456655543 3469999999988777654
No 60
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.45 E-value=4.3 Score=42.17 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=64.2
Q ss_pred ecceeeeeeccCCCCCceeEEEeeC-----CCcceEeeechhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCC
Q psy731 328 QTGIHGMSLSPLTRDNFRVMYFHPL-----ASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETG 401 (494)
Q Consensus 328 ~~Gi~gIaLsp~~~~g~r~LYf~pl-----ss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G 401 (494)
..|+.|||+.|+-.. +++||...- .+....+|.--.+.+..........-++.+.. .+..-...+++++ .+|
T Consensus 48 ~~gllgia~~p~f~~-n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-pDG 125 (331)
T PF07995_consen 48 ERGLLGIAFHPDFAS-NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-PDG 125 (331)
T ss_dssp TBSEEEEEE-TTCCC-C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE--TTS
T ss_pred cCCcccceeccccCC-CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-CCC
Confidence 358999999985322 256666332 22233333333333331111111111222222 1112335678999 799
Q ss_pred eEEEeccC-------------CCeEEEEeCCCCc----ccc---ccceeeeeecCCeEecccceEEcCC-ceEEEEecC
Q psy731 402 VIFYALLV-------------KSGVGCWNTFRGE----EYN---EKSMGLVAEDNATLIYPSDIRVDRT-GVLWVLSNK 459 (494)
Q Consensus 402 ~ly~~~~~-------------~~aI~~w~~~~~~----~~~---~~~~~~v~~d~~~l~~pd~~~id~~-g~Lwvlsnr 459 (494)
.||++.-. ..+|.+.++++.. |+. ....++.+.. |+=|-++.+|+. |.||+..|.
T Consensus 126 ~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~G---lRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 126 KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYG---LRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE-----SEEEEEEEETTTTEEEEEEE-
T ss_pred cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeC---CCccccEEEECCCCcEEEEccC
Confidence 99997432 4568899987621 110 0123455543 566788999998 999998643
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.23 E-value=15 Score=38.70 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=38.7
Q ss_pred CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCc-eeEE
Q psy731 156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTND-SHII 226 (494)
Q Consensus 156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~-~~rv 226 (494)
-.|+++|+.+++++-+..++. ..++++ .++.+|+.+. .+.+..+|.++|+ .|+.
T Consensus 266 g~l~ald~~tG~~~W~~~~~~---------~~~~~~-------~~~~vy~~~~-~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYGS---------VNDFAV-------DGGRIYLVDQ-NDRVYALDTRGGVELWSQ 320 (394)
T ss_pred CeEEEEECCCCCEEEeecCCC---------ccCcEE-------ECCEEEEEcC-CCeEEEEECCCCcEEEcc
Confidence 478899999999886655443 123444 3678999875 4679999999986 4665
No 62
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=90.05 E-value=1.3 Score=46.06 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=34.9
Q ss_pred CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCC
Q psy731 124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKE 176 (494)
Q Consensus 124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~ 176 (494)
++|.-..+.+- -+++||++|.|+. ++..+|+.+|+....-.+|.
T Consensus 200 ~GLsmPhSPRW-hdgrLwvldsgtG--------ev~~vD~~~G~~e~Va~vpG 243 (335)
T TIGR03032 200 SGLSMPHSPRW-YQGKLWLLNSGRG--------ELGYVDPQAGKFQPVAFLPG 243 (335)
T ss_pred cCccCCcCCcE-eCCeEEEEECCCC--------EEEEEcCCCCcEEEEEECCC
Confidence 44555555554 3689999999999 89999999999887777777
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.68 E-value=17 Score=33.55 Aligned_cols=195 Identities=16% Similarity=0.219 Sum_probs=96.9
Q ss_pred EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731 129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS 208 (494)
Q Consensus 129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs 208 (494)
|..+...+++++.+.-.... .+..||+.+++..+.+.... ..+..+... ..+.+++++..
T Consensus 12 i~~~~~~~~~~~l~~~~~~g--------~i~i~~~~~~~~~~~~~~~~-------~~i~~~~~~-----~~~~~l~~~~~ 71 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDG--------TIKVWDLETGELLRTLKGHT-------GPVRDVAAS-----ADGTYLASGSS 71 (289)
T ss_pred EEEEEEcCCCCEEEEeecCc--------EEEEEEeeCCCcEEEEecCC-------cceeEEEEC-----CCCCEEEEEcC
Confidence 44555666655544433222 67778888877666554332 112222221 12245555543
Q ss_pred CCCeEEEEEccCCceeE-EecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731 209 GHNHIVVYNYRTNDSHI-IHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG 287 (494)
Q Consensus 209 ~~~~iIVyd~~~~~~~r-v~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~ 287 (494)
.+.|.+||+.+++.-+ +.. .......+.... ++.+++.. ..
T Consensus 72 -~~~i~i~~~~~~~~~~~~~~-------------------------------~~~~i~~~~~~~-----~~~~~~~~-~~ 113 (289)
T cd00200 72 -DKTIRLWDLETGECVRTLTG-------------------------------HTSYVSSVAFSP-----DGRILSSS-SR 113 (289)
T ss_pred -CCeEEEEEcCcccceEEEec-------------------------------cCCcEEEEEEcC-----CCCEEEEe-cC
Confidence 6789999998863322 210 001122233321 12343333 34
Q ss_pred CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC-cceEeeechhhc
Q psy731 288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS-TTEFAVTTKVLQ 366 (494)
Q Consensus 288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss-~~ly~V~T~~L~ 366 (494)
+..|.+||+.+++..+.... ....+..++.+|+ ++.|+.....+ -.+|.+.+..+
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~-------------------~~~~i~~~~~~~~----~~~l~~~~~~~~i~i~d~~~~~~- 169 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRG-------------------HTDWVNSVAFSPD----GTFVASSSQDGTIKLWDLRTGKC- 169 (289)
T ss_pred CCeEEEEECCCcEEEEEecc-------------------CCCcEEEEEEcCc----CCEEEEEcCCCcEEEEEcccccc-
Confidence 66788999985543322210 0123566777765 24555544222 24444432111
Q ss_pred CCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCC
Q psy731 367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRG 421 (494)
Q Consensus 367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~ 421 (494)
...++ +.. .....+.++ .+| .++++.. ...|..||...+
T Consensus 170 ---------~~~~~--~~~---~~i~~~~~~-~~~~~l~~~~~-~~~i~i~d~~~~ 209 (289)
T cd00200 170 ---------VATLT--GHT---GEVNSVAFS-PDGEKLLSSSS-DGTIKLWDLSTG 209 (289)
T ss_pred ---------ceeEe--cCc---cccceEEEC-CCcCEEEEecC-CCcEEEEECCCC
Confidence 11111 211 235567888 566 5555544 888999999863
No 64
>KOG4499|consensus
Probab=89.63 E-value=1.1 Score=44.99 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=55.0
Q ss_pred ccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEe--CCCCccccccceeeeee----cCCeEecccceEEcC
Q psy731 376 NFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWN--TFRGEEYNEKSMGLVAE----DNATLIYPSDIRVDR 449 (494)
Q Consensus 376 ~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~--~~~~~~~~~~~~~~v~~----d~~~l~~pd~~~id~ 449 (494)
..+++.+-+. -..|.|++-|......||.+..+..|-.|| -.+|.-.+ -.+|.. .+..=..||||.||.
T Consensus 147 ~h~v~~i~~~--v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn---r~~i~dlrk~~~~e~~~PDGm~ID~ 221 (310)
T KOG4499|consen 147 GHQVELIWNC--VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN---RKVIFDLRKSQPFESLEPDGMTIDT 221 (310)
T ss_pred CCCceeeehh--ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccC---cceeEEeccCCCcCCCCCCcceEcc
Confidence 4556655543 356889999977889999999999998888 44543332 233321 122346899999999
Q ss_pred CceEEEEe
Q psy731 450 TGVLWVLS 457 (494)
Q Consensus 450 ~g~Lwvls 457 (494)
+|.|||.+
T Consensus 222 eG~L~Va~ 229 (310)
T KOG4499|consen 222 EGNLYVAT 229 (310)
T ss_pred CCcEEEEE
Confidence 99999996
No 65
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.27 E-value=41 Score=37.47 Aligned_cols=186 Identities=13% Similarity=0.133 Sum_probs=90.6
Q ss_pred CcEEEEeeCCCCeEEEEEccCC-ceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731 200 NAFLYIADSGHNHIVVYNYRTN-DSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD 278 (494)
Q Consensus 200 ~~~vYItDs~~~~iIVyd~~~~-~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~ 278 (494)
++.+|++++.+ .|+.+|.++| ..|+++...- .+... .......-..+++. +
T Consensus 69 ~g~vyv~s~~g-~v~AlDa~TGk~lW~~~~~~~-----~~~~~---------------~~~~~~~~rg~av~-------~ 120 (527)
T TIGR03075 69 DGVMYVTTSYS-RVYALDAKTGKELWKYDPKLP-----DDVIP---------------VMCCDVVNRGVALY-------D 120 (527)
T ss_pred CCEEEEECCCC-cEEEEECCCCceeeEecCCCC-----ccccc---------------ccccccccccceEE-------C
Confidence 56889988754 6999999987 5677732100 00000 00000000122332 3
Q ss_pred cEEEEecCCCCeEEEEEcCCCc-EEEEecCCcc--cCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc
Q psy731 279 AFLYIADSGHNHIVVYNYRTND-SHIIHHNYLH--FDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST 355 (494)
Q Consensus 279 ~~~YI~D~~~~gliVydl~~~~-swrv~~~~~~--~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~ 355 (494)
..+|+.+. +..|+.+|.++++ -|++...... ..........+|.-+- |..+-...++ | ...-|.+-++.
T Consensus 121 ~~v~v~t~-dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Viv---g~~~~~~~~~---G-~v~AlD~~TG~ 192 (527)
T TIGR03075 121 GKVFFGTL-DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVIT---GISGGEFGVR---G-YVTAYDAKTGK 192 (527)
T ss_pred CEEEEEcC-CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEE---eecccccCCC---c-EEEEEECCCCc
Confidence 46788763 4579999998765 4776532111 0011112223443221 1100001111 2 34455777777
Q ss_pred ceEeeechhhcCCCcC---ccc--cccceEEe-c---ccCCCCCCCeEEeeCCCCeEEEeccC---------------CC
Q psy731 356 TEFAVTTKVLQNRSLD---FSR--SNFDFKVM-G---SRGTGSQSGASSLDEETGVIFYALLV---------------KS 411 (494)
Q Consensus 356 ~ly~V~T~~L~~~~~~---~~~--~~~~v~~~-G---~~G~~~qs~g~~~D~~~G~ly~~~~~---------------~~ 411 (494)
.+++..+--- +.... ... .....+.+ | .+|..+.=..+++|+++|.||++--+ .+
T Consensus 193 ~lW~~~~~p~-~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~ 271 (527)
T TIGR03075 193 LVWRRYTVPG-DMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTS 271 (527)
T ss_pred eeEeccCcCC-CcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccce
Confidence 7777766321 11100 000 00000000 0 12222334467999999999998743 45
Q ss_pred eEEEEeCCCCc
Q psy731 412 GVGCWNTFRGE 422 (494)
Q Consensus 412 aI~~w~~~~~~ 422 (494)
+|.+.|.++|+
T Consensus 272 s~vAld~~TG~ 282 (527)
T TIGR03075 272 SIVARDPDTGK 282 (527)
T ss_pred eEEEEccccCC
Confidence 99999999884
No 66
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.03 E-value=1.4 Score=45.85 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=74.7
Q ss_pred eeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCc-C-ccccccceEEecccCCCCCCCeEEeeC---CCCeEEEec
Q psy731 333 GMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSL-D-FSRSNFDFKVMGSRGTGSQSGASSLDE---ETGVIFYAL 407 (494)
Q Consensus 333 gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~-~-~~~~~~~v~~~G~~G~~~qs~g~~~D~---~~G~ly~~~ 407 (494)
+||..|+ | .||+.-..+ +++.+. .+.+. . ...+ .+|...+++| .-|+++|| .+|.||+..
T Consensus 6 ~~a~~pd---G--~l~v~e~~G-~i~~~~----~~g~~~~~v~~~-~~v~~~~~~g----llgia~~p~f~~n~~lYv~~ 70 (331)
T PF07995_consen 6 SMAFLPD---G--RLLVAERSG-RIWVVD----KDGSLKTPVADL-PEVFADGERG----LLGIAFHPDFASNGYLYVYY 70 (331)
T ss_dssp EEEEETT---S--CEEEEETTT-EEEEEE----TTTEECEEEEE--TTTBTSTTBS----EEEEEE-TTCCCC-EEEEEE
T ss_pred EEEEeCC---C--cEEEEeCCc-eEEEEe----CCCcCcceeccc-ccccccccCC----cccceeccccCCCCEEEEEE
Confidence 3788775 2 778877755 777776 22221 0 0111 2344445554 46889996 368999988
Q ss_pred cCC--------CeEEEEeCCCCccccccceeeeeecCC----eEecccceEEcCCceEEEEecCchhhhcCCCCCCcccE
Q psy731 408 LVK--------SGVGCWNTFRGEEYNEKSMGLVAEDNA----TLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINV 475 (494)
Q Consensus 408 ~~~--------~aI~~w~~~~~~~~~~~~~~~v~~d~~----~l~~pd~~~id~~g~Lwvlsnrl~~~~~~~~~~~~~nf 475 (494)
... +.|.+|.-..+ .-...+.++|..+.+ .--+..+|.+++||+|||.+-.-.. .....+.+...-
T Consensus 71 t~~~~~~~~~~~~v~r~~~~~~-~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~-~~~~~~~~~~~G 148 (331)
T PF07995_consen 71 TNADEDGGDNDNRVVRFTLSDG-DGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN-DDNAQDPNSLRG 148 (331)
T ss_dssp EEE-TSSSSEEEEEEEEEEETT-SCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT-GGGGCSTTSSTT
T ss_pred EcccCCCCCcceeeEEEeccCC-ccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC-cccccccccccc
Confidence 855 78998887542 111123445544311 2345567899999999999722222 222234455566
Q ss_pred EEEEEech
Q psy731 476 RIFKSTVR 483 (494)
Q Consensus 476 rI~r~~~~ 483 (494)
.|+|++.+
T Consensus 149 ~ilri~~d 156 (331)
T PF07995_consen 149 KILRIDPD 156 (331)
T ss_dssp EEEEEETT
T ss_pred eEEEeccc
Confidence 78888754
No 67
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.79 E-value=31 Score=35.84 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=72.2
Q ss_pred ecceeeeeeccCCCCCceeEEE-eeCCCcceEeeechh--hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEE
Q psy731 328 QTGIHGMSLSPLTRDNFRVMYF-HPLASTTEFAVTTKV--LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIF 404 (494)
Q Consensus 328 ~~Gi~gIaLsp~~~~g~r~LYf-~plss~~ly~V~T~~--L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly 404 (494)
.-|.-|+|-+|. ++.||| .--.--.+|.+..+- |-...........++-. .--.|+.+|+.+|+|+
T Consensus 180 N~GfEGlA~d~~----~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~-------~DvSgl~~~~~~~~LL 248 (316)
T COG3204 180 NKGFEGLAWDPV----DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV-------LDVSGLEFNAITNSLL 248 (316)
T ss_pred CcCceeeecCCC----CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe-------eccccceecCCCCcEE
Confidence 357889999986 357777 333334778886211 10000001111111111 1245789998899988
Q ss_pred EeccCCCeEEEEeCCCCc----cccccceeeeeecCCeEecccceEEcCCceEEEEe--cCchhhh
Q psy731 405 YALLVKSGVGCWNTFRGE----EYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS--NKLPVFL 464 (494)
Q Consensus 405 ~~~~~~~aI~~w~~~~~~----~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls--nrl~~~~ 464 (494)
.=--+...+.-.|..+.. .+...++++ - ..+.=|.|+..|.+|.|||.| |.|-+|.
T Consensus 249 VLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL-~---~dipqaEGiamDd~g~lYIvSEPnlfy~F~ 310 (316)
T COG3204 249 VLSDESRRLLEVDLSGEVIELLSLTKGNHGL-S---SDIPQAEGIAMDDDGNLYIVSEPNLFYRFT 310 (316)
T ss_pred EEecCCceEEEEecCCCeeeeEEeccCCCCC-c---ccCCCcceeEECCCCCEEEEecCCcceecc
Confidence 877788888888887721 011112222 1 224458899999999999998 7766654
No 68
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.78 E-value=44 Score=37.21 Aligned_cols=145 Identities=11% Similarity=0.019 Sum_probs=77.7
Q ss_pred CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-----CC
Q psy731 137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-----HN 211 (494)
Q Consensus 137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-----~~ 211 (494)
.+++++-+... +|+++|.+|++++-++.+.. .....+....++|. ++.||+.-++ .+
T Consensus 120 ~~~v~v~t~dg---------~l~ALDa~TGk~~W~~~~~~--~~~~~~~tssP~v~-------~g~Vivg~~~~~~~~~G 181 (527)
T TIGR03075 120 DGKVFFGTLDA---------RLVALDAKTGKVVWSKKNGD--YKAGYTITAAPLVV-------KGKVITGISGGEFGVRG 181 (527)
T ss_pred CCEEEEEcCCC---------EEEEEECCCCCEEeeccccc--ccccccccCCcEEE-------CCEEEEeecccccCCCc
Confidence 45777654322 79999999999997776643 11112233455553 4578886543 46
Q ss_pred eEEEEEccCCc-eeEEecCccccCC-CCCccccCCccceeeeeccccccc-ccccceeeEEeeecCCCCCcEEEEecCC-
Q psy731 212 HIVVYNYRTND-SHIIHHNYLHFDP-LFGDFTIGGEYSEFFQLKEKTDYT-EESKFSNMVVDVTSANCDDAFLYIADSG- 287 (494)
Q Consensus 212 ~iIVyd~~~~~-~~rv~~~~~~~dp-~~~~f~i~g~~~~~f~l~~~~~~~-~~s~~~~i~VD~~~~~c~~~~~YI~D~~- 287 (494)
.|+.+|..+|+ .|+++--+-.+.+ .-..++++||-+.- |+..+.-.. ..+--..+++|.. ...+|+.=-.
T Consensus 182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~-tw~~~~~~~gg~~~W~~~s~D~~-----~~lvy~~tGnp 255 (527)
T TIGR03075 182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK-TWPGDAWKTGGGATWGTGSYDPE-----TNLIYFGTGNP 255 (527)
T ss_pred EEEEEECCCCceeEeccCcCCCcccccccccccccccccC-CCCCCccccCCCCccCceeEcCC-----CCeEEEeCCCC
Confidence 89999998886 4776322211110 01112233322100 111111111 1122345566642 4566665311
Q ss_pred --------------CCeEEEEEcCCCcE-EEEe
Q psy731 288 --------------HNHIVVYNYRTNDS-HIIH 305 (494)
Q Consensus 288 --------------~~gliVydl~~~~s-wrv~ 305 (494)
...|+..|.+|++. |.+-
T Consensus 256 ~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 256 SPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred CCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence 23899999999886 7774
No 69
>PRK04043 tolB translocation protein TolB; Provisional
Probab=88.72 E-value=38 Score=36.47 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=60.3
Q ss_pred CCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC-CCCeEEEEEccCCceeEEecCcc-c
Q psy731 155 PPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS-GHNHIVVYNYRTNDSHIIHHNYL-H 232 (494)
Q Consensus 155 ~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs-~~~~iIVyd~~~~~~~rv~~~~~-~ 232 (494)
.|.|.++|+.+++..+-..++. .+ ...+. ..+++.-+|..+. +...|.++|+.++...++++... .
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g---------~~-~~~~~--SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d 279 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQG---------ML-VVSDV--SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGID 279 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCC---------cE-EeeEE--CCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCcc
Confidence 4677777777766544333222 11 11222 2234555565553 34579999999999888843221 0
Q ss_pred cCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC-CeEEEEEcCCCcEEEEec
Q psy731 233 FDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH-NHIVVYNYRTNDSHIIHH 306 (494)
Q Consensus 233 ~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~-~gliVydl~~~~swrv~~ 306 (494)
-.| ... + .++..+|.+|-.+ +.|.++|+.+++..|+..
T Consensus 280 ~~p--------------------------------~~S--P--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 280 VNG--------------------------------NFV--E--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred Ccc--------------------------------EEC--C--CCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 000 111 1 1356788887654 589999999988877653
No 70
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.47 E-value=14 Score=40.48 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=64.4
Q ss_pred ecceeeeeeccCC--CCCceeEEEeeCC---------CcceEeeechhhcCCCcCccccccceEEe-cc-cCCCCCCCeE
Q psy731 328 QTGIHGMSLSPLT--RDNFRVMYFHPLA---------STTEFAVTTKVLQNRSLDFSRSNFDFKVM-GS-RGTGSQSGAS 394 (494)
Q Consensus 328 ~~Gi~gIaLsp~~--~~g~r~LYf~pls---------s~~ly~V~T~~L~~~~~~~~~~~~~v~~~-G~-~G~~~qs~g~ 394 (494)
..|+.||||+|+- ...+++||+..-. ..++.+...+. .+.. +......+ +. .+..-..+.+
T Consensus 78 e~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~-~~~~-----l~~~~~Il~~lP~~~~H~GgrI 151 (454)
T TIGR03606 78 HNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDK-STQT-----LEKPVDLLAGLPAGNDHNGGRL 151 (454)
T ss_pred CCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecC-CCCc-----cccceEEEecCCCCCCcCCceE
Confidence 5799999999974 1334788886421 22444443211 0011 11111112 21 1112335678
Q ss_pred EeeCCCCeEEEeccCC--------------------------------CeEEEEeCCCCc----cccccc-eeeeeecCC
Q psy731 395 SLDEETGVIFYALLVK--------------------------------SGVGCWNTFRGE----EYNEKS-MGLVAEDNA 437 (494)
Q Consensus 395 ~~D~~~G~ly~~~~~~--------------------------------~aI~~w~~~~~~----~~~~~~-~~~v~~d~~ 437 (494)
+++ .+|.||++.=+. ..|.|.|+++.+ ||.... -++.+.
T Consensus 152 ~Fg-PDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~--- 227 (454)
T TIGR03606 152 VFG-PDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY--- 227 (454)
T ss_pred EEC-CCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE---
Confidence 899 689999954332 168888888732 121000 012222
Q ss_pred eEecccceEEcCCceEEEEe
Q psy731 438 TLIYPSDIRVDRTGVLWVLS 457 (494)
Q Consensus 438 ~l~~pd~~~id~~g~Lwvls 457 (494)
.++=|-+|.+|++|.||+..
T Consensus 228 G~RNp~Gla~dp~G~Lw~~e 247 (454)
T TIGR03606 228 GHRNPQGLAFTPDGTLYASE 247 (454)
T ss_pred eccccceeEECCCCCEEEEe
Confidence 13346788899999999985
No 71
>KOG1214|consensus
Probab=87.92 E-value=2.6 Score=48.66 Aligned_cols=124 Identities=16% Similarity=0.181 Sum_probs=86.0
Q ss_pred eeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCC
Q psy731 331 IHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVK 410 (494)
Q Consensus 331 i~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~ 410 (494)
+.||+..=+ .|.+||.-|+++ +|.++-|. .. .-+.+-.+| .+...|+|+|...-|||+++...
T Consensus 1027 iVGidfDC~----e~mvyWtDv~g~---SI~rasL~-G~--------Ep~ti~n~~-L~SPEGiAVDh~~Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1027 IVGIDFDCR----ERMVYWTDVAGR---SISRASLE-GA--------EPETIVNSG-LISPEGIAVDHIRRNMYWTDSVL 1089 (1289)
T ss_pred eeeeecccc----cceEEEeecCCC---cccccccc-CC--------CCceeeccc-CCCccceeeeeccceeeeecccc
Confidence 567777543 589999999996 56666664 21 111122233 34578999997677999999999
Q ss_pred CeEEEEeCCCCccccccceeeeeecCCeEecccceEEcC-CceEEEEe-cCchhhhcCCCCCCcccEEEEEE
Q psy731 411 SGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDR-TGVLWVLS-NKLPVFLYSKLKPEDINVRIFKS 480 (494)
Q Consensus 411 ~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~-~g~Lwvls-nrl~~~~~~~~~~~~~nfrI~r~ 480 (494)
+.|..-.-++ .+ -++|+. ..|+=|-++.+|. .|.||-+- ||=...+ ++.+.+..|=||+--
T Consensus 1090 D~IevA~LdG--~~----rkvLf~--tdLVNPR~iv~D~~rgnLYwtDWnRenPkI-ets~mDG~NrRilin 1152 (1289)
T KOG1214|consen 1090 DKIEVALLDG--SE----RKVLFY--TDLVNPRAIVVDPIRGNLYWTDWNRENPKI-ETSSMDGENRRILIN 1152 (1289)
T ss_pred chhheeecCC--ce----eeEEEe--ecccCcceEEeecccCceeeccccccCCcc-eeeccCCccceEEee
Confidence 9999888887 33 245554 3588999999987 66898875 6665555 345666777777743
No 72
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.26 E-value=16 Score=37.82 Aligned_cols=66 Identities=11% Similarity=0.227 Sum_probs=48.1
Q ss_pred CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEE
Q psy731 137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVY 216 (494)
Q Consensus 137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVy 216 (494)
.++|++.+... .|.++|..|++++-++.++.. ....++++ ++.+|+.+. .+.+..+
T Consensus 65 ~~~v~v~~~~g---------~v~a~d~~tG~~~W~~~~~~~-------~~~~p~v~-------~~~v~v~~~-~g~l~al 120 (377)
T TIGR03300 65 GGKVYAADADG---------TVVALDAETGKRLWRVDLDER-------LSGGVGAD-------GGLVFVGTE-KGEVIAL 120 (377)
T ss_pred CCEEEEECCCC---------eEEEEEccCCcEeeeecCCCC-------cccceEEc-------CCEEEEEcC-CCEEEEE
Confidence 56888876432 699999999999988888772 22345553 678898864 4679999
Q ss_pred EccCCce-eEE
Q psy731 217 NYRTNDS-HII 226 (494)
Q Consensus 217 d~~~~~~-~rv 226 (494)
|.++|+. |+.
T Consensus 121 d~~tG~~~W~~ 131 (377)
T TIGR03300 121 DAEDGKELWRA 131 (377)
T ss_pred ECCCCcEeeee
Confidence 9987764 665
No 73
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=87.14 E-value=0.96 Score=29.93 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCCeEEeeCCCCeEEEeccCCCeEEEE
Q psy731 390 QSGASSLDEETGVIFYALLVKSGVGCW 416 (494)
Q Consensus 390 qs~g~~~D~~~G~ly~~~~~~~aI~~w 416 (494)
...|+++| ++|+||.++.+++.|.++
T Consensus 3 ~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 35689999 999999999999998764
No 74
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=86.88 E-value=1.4 Score=30.53 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=28.9
Q ss_pred CCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731 389 SQSGASSLDEETGVIFYALLVKSGVGCWNTFR 420 (494)
Q Consensus 389 ~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~ 420 (494)
..+.|+++|+..+.||+++.....|.+.+-++
T Consensus 9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 45789999999999999999999999998876
No 75
>KOG0268|consensus
Probab=86.78 E-value=41 Score=35.88 Aligned_cols=254 Identities=15% Similarity=0.169 Sum_probs=133.4
Q ss_pred CCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCcccc
Q psy731 154 QPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHF 233 (494)
Q Consensus 154 ~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~ 233 (494)
|--.+-.||+.+...+++++- ...+.++|.||. +.++|+.|-..=....++. .-.+-+..++.+-
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~A-------H~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~~--~p~~tilg~s~~~ 151 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKA-------HEGLVRGICVTQ------TSFFTVGDDKTVKQWKIDG--PPLHTILGKSVYL 151 (433)
T ss_pred cCceEEEEehhhhhhhheeec-------ccCceeeEEecc------cceEEecCCcceeeeeccC--Ccceeeecccccc
Confidence 444788899999888887762 345778999974 7788888876544444444 2444443333222
Q ss_pred CC----CCCccccCCccceeeeecccccccccc-cceee-EEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecC
Q psy731 234 DP----LFGDFTIGGEYSEFFQLKEKTDYTEES-KFSNM-VVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHN 307 (494)
Q Consensus 234 dp----~~~~f~i~g~~~~~f~l~~~~~~~~~s-~~~~i-~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~ 307 (494)
+- .-..|+.+||.=++|...-++-+...+ +..+| .+-.. -..+.+--+=..+.+|++||++++.--+=---
T Consensus 152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfN---pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~ 228 (433)
T KOG0268|consen 152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFN---PVETSILASCASDRSIVLYDLRQASPLKKVIL 228 (433)
T ss_pred ccccccccccccccCceeeecccccCCccceeecCCCceeEEecC---CCcchheeeeccCCceEEEecccCCccceeee
Confidence 22 246788888776666553322222211 11111 11111 11222222223568999999998762111000
Q ss_pred CcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCC
Q psy731 308 YLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGT 387 (494)
Q Consensus 308 ~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~ 387 (494)
.| --++|+-+|- ...|..+=--..+|--....|..+.. .. +|
T Consensus 229 ~m--------------------RTN~IswnPe-----afnF~~a~ED~nlY~~DmR~l~~p~~----------v~--~d- 270 (433)
T KOG0268|consen 229 TM--------------------RTNTICWNPE-----AFNFVAANEDHNLYTYDMRNLSRPLN----------VH--KD- 270 (433)
T ss_pred ec--------------------cccceecCcc-----ccceeeccccccceehhhhhhcccch----------hh--cc-
Confidence 11 1234444441 11222221122444445555543321 11 11
Q ss_pred CCCCCeEEee-CCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEecCchhhhcC
Q psy731 388 GSQSGASSLD-EETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYS 466 (494)
Q Consensus 388 ~~qs~g~~~D-~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsnrl~~~~~~ 466 (494)
--|.-|.+| ..+|.=|.+-.=..+|-.++.+.| .+-++ +.. .|+|-.-+++...|. =||+|
T Consensus 271 -hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~-----~SRdi-Yht-kRMq~V~~Vk~S~Ds-kyi~S--------- 332 (433)
T KOG0268|consen 271 -HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG-----HSRDI-YHT-KRMQHVFCVKYSMDS-KYIIS--------- 332 (433)
T ss_pred -cceeEEEeccCCCcchhccccccceEEEeecCCC-----cchhh-hhH-hhhheeeEEEEeccc-cEEEe---------
Confidence 113345555 367877777777788999988764 12233 332 677777777765543 23332
Q ss_pred CCCCCcccEEEEEEech
Q psy731 467 KLKPEDINVRIFKSTVR 483 (494)
Q Consensus 467 ~~~~~~~nfrI~r~~~~ 483 (494)
..++.|.|+||..-.
T Consensus 333 --GSdd~nvRlWka~As 347 (433)
T KOG0268|consen 333 --GSDDGNVRLWKAKAS 347 (433)
T ss_pred --cCCCcceeeeecchh
Confidence 256789999998643
No 76
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=86.22 E-value=1.8 Score=28.65 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=19.7
Q ss_pred ceEEeeEEEcCCCeEEEEeCCCC
Q psy731 126 LTSVVKVQSDPCDRLWALDSGVV 148 (494)
Q Consensus 126 lvsV~~i~iD~~~~LwvlD~G~~ 148 (494)
|..+.++.+|.+|.|||.|.+.-
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~ 23 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNH 23 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCT
T ss_pred CcCCcEEEEeCCCCEEEEECCCC
Confidence 34578999999999999998876
No 77
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=85.04 E-value=2.4 Score=47.15 Aligned_cols=72 Identities=14% Similarity=0.302 Sum_probs=52.1
Q ss_pred CCCCeEEeeCCCCeEEEeccCCC-------------------eEEEEeCCCCc-cccccceeeeeec-------------
Q psy731 389 SQSGASSLDEETGVIFYALLVKS-------------------GVGCWNTFRGE-EYNEKSMGLVAED------------- 435 (494)
Q Consensus 389 ~qs~g~~~D~~~G~ly~~~~~~~-------------------aI~~w~~~~~~-~~~~~~~~~v~~d------------- 435 (494)
...-++.++|.+|.+|++..+.. .|++|++.++. ....-...+++..
T Consensus 350 ~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~ 429 (524)
T PF05787_consen 350 DRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNK 429 (524)
T ss_pred cCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCc
Confidence 34678999999999999998877 89999987630 0111123333321
Q ss_pred --CCeEecccceEEcCCceEEEEecCc
Q psy731 436 --NATLIYPSDIRVDRTGVLWVLSNKL 460 (494)
Q Consensus 436 --~~~l~~pd~~~id~~g~Lwvlsnrl 460 (494)
...|.-||.|.+|++|.|||.+..-
T Consensus 430 ~~~~~f~sPDNL~~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 430 CDDNGFASPDNLAFDPDGNLWIQEDGG 456 (524)
T ss_pred ccCCCcCCCCceEECCCCCEEEEeCCC
Confidence 3558899999999999999997443
No 78
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=84.65 E-value=67 Score=35.17 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=43.1
Q ss_pred CEEEEEECCCCcEEEEEEcCC-Ccccc-------------ccCCccceEEEeecCCCCCcEEEEeeCCC-----------
Q psy731 156 PSVQVYDLRQQMQIRFFQLKE-KTDYT-------------EESKFSNMVVDVTSANCDNAFLYIADSGH----------- 210 (494)
Q Consensus 156 Pklv~~dl~t~~vi~~~~lp~-~~~~~-------------~~S~l~d~vVD~~~~~c~~~~vYItDs~~----------- 210 (494)
-.|+++|+.|++++=++++.. ..... .......+++|. .++.||+.-...
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-----~~g~V~vg~~~g~~~~~~~~~~~ 249 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-----KTNLVYVGTGNGSPWNWGGRRTP 249 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-----CCCEEEEECCCCCCCccCCccCC
Confidence 367899999999998888732 11111 112234566764 467888874332
Q ss_pred ------CeEEEEEccCCce-eEE
Q psy731 211 ------NHIVVYNYRTNDS-HII 226 (494)
Q Consensus 211 ------~~iIVyd~~~~~~-~rv 226 (494)
+.|+.+|.++|+. |+.
T Consensus 250 ~~~~~~~~l~Ald~~tG~~~W~~ 272 (488)
T cd00216 250 GDNLYTDSIVALDADTGKVKWFY 272 (488)
T ss_pred CCCCceeeEEEEcCCCCCEEEEe
Confidence 3799999998875 555
No 79
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=83.81 E-value=41 Score=37.11 Aligned_cols=104 Identities=12% Similarity=0.139 Sum_probs=61.4
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCC
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL 236 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~ 236 (494)
+|.+||..++++.+ ++= +-+.+-.+.|+. +..++-++.. +.-|.|+|+.+|..+-++.+-
T Consensus 383 ~l~iyd~~~~e~kr-~e~-------~lg~I~av~vs~-----dGK~~vvaNd-r~el~vididngnv~~idkS~------ 442 (668)
T COG4946 383 KLGIYDKDGGEVKR-IEK-------DLGNIEAVKVSP-----DGKKVVVAND-RFELWVIDIDNGNVRLIDKSE------ 442 (668)
T ss_pred eEEEEecCCceEEE-eeC-------CccceEEEEEcC-----CCcEEEEEcC-ceEEEEEEecCCCeeEecccc------
Confidence 78888888877654 321 112233333432 3455555543 357999999999998884311
Q ss_pred CCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC--CCeEEEEEcCCCcEEEEecCC
Q psy731 237 FGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG--HNHIVVYNYRTNDSHIIHHNY 308 (494)
Q Consensus 237 ~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~--~~gliVydl~~~~swrv~~~~ 308 (494)
-..+.+++.-. -.+-+||--=.+ ...|-+||+.+++..+++.+.
T Consensus 443 ------------------------~~lItdf~~~~----nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t 488 (668)
T COG4946 443 ------------------------YGLITDFDWHP----NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT 488 (668)
T ss_pred ------------------------cceeEEEEEcC----CceeEEEecCcceeeeeEEEEecCCCeEEEecCCc
Confidence 11223333321 134555543333 257899999999999998653
No 80
>KOG1539|consensus
Probab=82.52 E-value=23 Score=41.19 Aligned_cols=163 Identities=15% Similarity=0.266 Sum_probs=86.0
Q ss_pred ccceeeEEeeecCCCCCcEEEEecCCCCeE-EEEEcCCCc---EEEEecCCcccCCCCcceEEcCEEeeeecceeeeeec
Q psy731 262 SKFSNMVVDVTSANCDDAFLYIADSGHNHI-VVYNYRTND---SHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLS 337 (494)
Q Consensus 262 s~~~~i~VD~~~~~c~~~~~YI~D~~~~gl-iVydl~~~~---swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLs 337 (494)
.-.+++++|.+. -.-|+- +..|| -.||.++.. +||+.+.- .+..+....+++.|++.
T Consensus 494 ~~V~gla~D~~n------~~~vsa-~~~Gilkfw~f~~k~l~~~l~l~~~~------------~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 494 GEVTGLAVDGTN------RLLVSA-GADGILKFWDFKKKVLKKSLRLGSSI------------TGIVYHRVSDLLAIALD 554 (910)
T ss_pred CceeEEEecCCC------ceEEEc-cCcceEEEEecCCcceeeeeccCCCc------------ceeeeeehhhhhhhhcC
Confidence 346778888652 122332 33454 477777665 45554432 22233344566777774
Q ss_pred cCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEe
Q psy731 338 PLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWN 417 (494)
Q Consensus 338 p~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~ 417 (494)
.- +-.+|.+-|... .+.|.-.|+ +-..|.+. .+|....+......|..||
T Consensus 555 df--------------~I~vvD~~t~kv----------vR~f~gh~n-----ritd~~FS-~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 555 DF--------------SIRVVDVVTRKV----------VREFWGHGN-----RITDMTFS-PDGRWLISASMDSTIRTWD 604 (910)
T ss_pred ce--------------eEEEEEchhhhh----------hHHhhcccc-----ceeeeEeC-CCCcEEEEeecCCcEEEEe
Confidence 21 223334433222 133333333 35678888 8999999999999999999
Q ss_pred CCCCccccccceeeeeecCCe--------EecccceEEcCCc-eEEEEecCchhhhcCCCCCCcccEEEE
Q psy731 418 TFRGEEYNEKSMGLVAEDNAT--------LIYPSDIRVDRTG-VLWVLSNKLPVFLYSKLKPEDINVRIF 478 (494)
Q Consensus 418 ~~~~~~~~~~~~~~v~~d~~~--------l~~pd~~~id~~g-~Lwvlsnrl~~~~~~~~~~~~~nfrI~ 478 (494)
.-+|. -+..+.-|.+. ..|=....+|..| +||..-..|...--..++..+.+-++.
T Consensus 605 lpt~~-----lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~vs~r~~~~~~~~~~v~ 669 (910)
T KOG1539|consen 605 LPTGT-----LIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKSVSTRAIPADYVPSWVM 669 (910)
T ss_pred ccCcc-----eeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHheeccccccCcccccceee
Confidence 76642 13444444333 2222233345555 566544444443333455555555554
No 81
>PRK01742 tolB translocation protein TolB; Provisional
Probab=80.48 E-value=86 Score=33.50 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCcEEEEeeC-CCCeEEEEEccCCceeEE
Q psy731 199 DNAFLYIADS-GHNHIVVYNYRTNDSHII 226 (494)
Q Consensus 199 ~~~~vYItDs-~~~~iIVyd~~~~~~~rv 226 (494)
++..+|+++. +...|.++|+.+|...++
T Consensus 215 G~~la~~s~~~~~~~i~i~dl~tg~~~~l 243 (429)
T PRK01742 215 GSKLAYVSFENKKSQLVVHDLRSGARKVV 243 (429)
T ss_pred CCEEEEEEecCCCcEEEEEeCCCCceEEE
Confidence 5677888764 345799999999877666
No 82
>PRK01029 tolB translocation protein TolB; Provisional
Probab=80.18 E-value=91 Score=33.58 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=23.3
Q ss_pred cEEEEeeCC-CCeEEEEEccCCceeEEec
Q psy731 201 AFLYIADSG-HNHIVVYNYRTNDSHIIHH 228 (494)
Q Consensus 201 ~~vYItDs~-~~~iIVyd~~~~~~~rv~~ 228 (494)
.++|+++.. ...|.++|+.+|...++.+
T Consensus 200 ~~~y~S~~~g~~~I~~~~l~~g~~~~lt~ 228 (428)
T PRK01029 200 PYLYVSYKLGVPKIFLGSLENPAGKKILA 228 (428)
T ss_pred EEEEEEccCCCceEEEEECCCCCceEeec
Confidence 488999875 4679999999999999943
No 83
>PRK00178 tolB translocation protein TolB; Provisional
Probab=79.24 E-value=90 Score=33.02 Aligned_cols=72 Identities=10% Similarity=0.163 Sum_probs=43.0
Q ss_pred CCcEEEEeeC-CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731 199 DNAFLYIADS-GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD 277 (494)
Q Consensus 199 ~~~~vYItDs-~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~ 277 (494)
++..+|..+. +...|.+||+.++...++.++.. ........ + .+
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~-------------------------------~~~~~~~s--p--Dg 298 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA-------------------------------IDTEPFWG--K--DG 298 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeEEcccCCC-------------------------------CcCCeEEC--C--CC
Confidence 4455566554 34579999999999888843111 00001111 1 12
Q ss_pred CcEEEEecCC-CCeEEEEEcCCCcEEEEe
Q psy731 278 DAFLYIADSG-HNHIVVYNYRTNDSHIIH 305 (494)
Q Consensus 278 ~~~~YI~D~~-~~gliVydl~~~~swrv~ 305 (494)
+..+|.+|.. .+.|.++|+.+++.-++.
T Consensus 299 ~~i~f~s~~~g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 299 RTLYFTSDRGGKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 4566777654 467999999888866664
No 84
>PRK02889 tolB translocation protein TolB; Provisional
Probab=79.11 E-value=95 Score=33.19 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=43.1
Q ss_pred CCCcEEEEeeC-CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCC
Q psy731 198 CDNAFLYIADS-GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANC 276 (494)
Q Consensus 198 c~~~~vYItDs-~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c 276 (494)
+++..+|.+|. +...|.++|+.++...++... +.......+. + .
T Consensus 294 DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-------------------------------g~~~~~~~~S--p--D 338 (427)
T PRK02889 294 DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-------------------------------GSYNTSPRIS--P--D 338 (427)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCceEEEecC-------------------------------CCCcCceEEC--C--C
Confidence 35566777774 456788888888887777310 0000111221 1 1
Q ss_pred CCcEEEEecCC-CCeEEEEEcCCCcEEEEec
Q psy731 277 DDAFLYIADSG-HNHIVVYNYRTNDSHIIHH 306 (494)
Q Consensus 277 ~~~~~YI~D~~-~~gliVydl~~~~swrv~~ 306 (494)
++..+|....+ ...|.++|+.+++..++.+
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQVTALTD 369 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCCeEEccC
Confidence 24556666543 3579999999888766653
No 85
>KOG4659|consensus
Probab=77.67 E-value=5.1 Score=48.45 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=53.8
Q ss_pred CCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeee-------------------ecCCeEecccceEEcC
Q psy731 389 SQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVA-------------------EDNATLIYPSDIRVDR 449 (494)
Q Consensus 389 ~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~-------------------~d~~~l~~pd~~~id~ 449 (494)
+.+=-||+||-.|.||+++.+...|++...-.+ .=.+.|.++|+ +| ..|.+|-|+++|+
T Consensus 407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~-~d~~~N~evvaG~Ge~Clp~desCGDGalA~d-A~L~~PkGIa~dk 484 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP-QDSRNNYEVVAGDGEVCLPADESCGDGALAQD-AQLIFPKGIAFDK 484 (1899)
T ss_pred cceeEEEecCcCceEEecCCCcceEEEeccCCc-cccccCeeEEeccCcCccccccccCcchhccc-ceeccCCceeEcc
Confidence 556678999999999999999999998875432 12234666654 44 6789999999999
Q ss_pred CceEEEEecC
Q psy731 450 TGVLWVLSNK 459 (494)
Q Consensus 450 ~g~Lwvlsnr 459 (494)
+|.||+.-.+
T Consensus 485 ~g~lYfaD~t 494 (1899)
T KOG4659|consen 485 MGNLYFADGT 494 (1899)
T ss_pred CCcEEEeccc
Confidence 9999998543
No 86
>KOG0316|consensus
Probab=77.25 E-value=88 Score=31.81 Aligned_cols=180 Identities=19% Similarity=0.220 Sum_probs=101.8
Q ss_pred CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCC
Q psy731 156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDP 235 (494)
Q Consensus 156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp 235 (494)
-.+..||..||+++|++.=.. ...|.++.. .+.-|-.+-+-...+=+||-++.+.-.|.
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~-------aqVNtV~fN------eesSVv~SgsfD~s~r~wDCRS~s~ePiQ-------- 139 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHL-------AQVNTVRFN------EESSVVASGSFDSSVRLWDCRSRSFEPIQ-------- 139 (307)
T ss_pred ceEEEEEcccCeeeeeccccc-------ceeeEEEec------CcceEEEeccccceeEEEEcccCCCCccc--------
Confidence 378899999999999886333 334555543 34556666666667778887776665551
Q ss_pred CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731 236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF 315 (494)
Q Consensus 236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~ 315 (494)
.+.| .+. .-.-||+. .+--|+-+.+..+-+||++.++. ...+|.
T Consensus 140 ---------------ilde---a~D----~V~Si~v~------~heIvaGS~DGtvRtydiR~G~l---~sDy~g----- 183 (307)
T KOG0316|consen 140 ---------------ILDE---AKD----GVSSIDVA------EHEIVAGSVDGTVRTYDIRKGTL---SSDYFG----- 183 (307)
T ss_pred ---------------hhhh---hcC----ceeEEEec------ccEEEeeccCCcEEEEEeeccee---ehhhcC-----
Confidence 0110 011 11234442 34456666677788999987763 222322
Q ss_pred cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeE
Q psy731 316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGAS 394 (494)
Q Consensus 316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~ 394 (494)
..|..+..|+++ ..+--..|.|+ ++..-.|-.|...-. .-.+..++.--. ..|++.+
T Consensus 184 -------------~pit~vs~s~d~----nc~La~~l~stlrLlDk~tGklL~sYk--Ghkn~eykldc~---l~qsdth 241 (307)
T KOG0316|consen 184 -------------HPITSVSFSKDG----NCSLASSLDSTLRLLDKETGKLLKSYK--GHKNMEYKLDCC---LNQSDTH 241 (307)
T ss_pred -------------CcceeEEecCCC----CEEEEeeccceeeecccchhHHHHHhc--ccccceeeeeee---eccccee
Confidence 237778888873 46667778775 555555533322111 001122332221 3677777
Q ss_pred Eee-CCCCeEEEeccCCCeEE
Q psy731 395 SLD-EETGVIFYALLVKSGVG 414 (494)
Q Consensus 395 ~~D-~~~G~ly~~~~~~~aI~ 414 (494)
.+. .+.|.+||=++....+.
T Consensus 242 V~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred EEeccCCceEEEEEeccceee
Confidence 665 47887777666555544
No 87
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=76.80 E-value=1.1e+02 Score=33.27 Aligned_cols=105 Identities=10% Similarity=0.225 Sum_probs=67.5
Q ss_pred CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC-CCCeEEEEEccCCceeEEecCccccC
Q psy731 156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS-GHNHIVVYNYRTNDSHIIHHNYLHFD 234 (494)
Q Consensus 156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs-~~~~iIVyd~~~~~~~rv~~~~~~~d 234 (494)
|++..+|+++++-.+...++. .+..-.+ ..+++..+|.++- +...|.|+|++.+..+|+++..-
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g------~~~~P~f------spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g--- 282 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG------NNGAPAF------SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG--- 282 (425)
T ss_pred ceEEEEeccCCccceeeccCC------ccCCccC------CCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCc---
Confidence 788888888887665444433 1111111 2235677777655 44679999999999988744111
Q ss_pred CCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC-CeEEEEEcCCCcEEEEecC
Q psy731 235 PLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH-NHIVVYNYRTNDSHIIHHN 307 (494)
Q Consensus 235 p~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~-~gliVydl~~~~swrv~~~ 307 (494)
|.+ -..+..| ++..+|++|-++ +-|.+||+.++..-|++-.
T Consensus 283 -------i~~-------------------~Ps~spd------G~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 283 -------INT-------------------SPSWSPD------GSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred -------ccc-------------------CccCCCC------CCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 110 1112223 367899999764 7899999999999888754
No 88
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=76.38 E-value=2.9 Score=29.83 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=21.4
Q ss_pred eEEecccCCCCCCCeEEeeCCCCeEEEeccC
Q psy731 379 FKVMGSRGTGSQSGASSLDEETGVIFYALLV 409 (494)
Q Consensus 379 v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~ 409 (494)
++.+|..+......++++| +.||+|++-..
T Consensus 3 ~~~lG~~~~~~~~~~IavD-~~GNiYv~G~T 32 (38)
T PF06739_consen 3 STQLGGPGAQDYGNGIAVD-SNGNIYVTGYT 32 (38)
T ss_pred EEEeCCCCCceeEEEEEEC-CCCCEEEEEee
Confidence 4556654333457899999 89999997543
No 89
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=75.97 E-value=1e+02 Score=32.01 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=71.5
Q ss_pred CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC-CCCeEEEEEccCCceeEEecCccccC
Q psy731 156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS-GHNHIVVYNYRTNDSHIIHHNYLHFD 234 (494)
Q Consensus 156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs-~~~~iIVyd~~~~~~~rv~~~~~~~d 234 (494)
+.|.++|+.+++..+.-.++. ....++.. .+++..+|.++. +...|.++|+.++...++..+..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~--------~~~~~~~s----pDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~--- 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG--------MNGAPAFS----PDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPG--- 278 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC--------CccceEEC----CCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCC---
Confidence 578888888876544222222 11123331 123444555443 33579999999998877732111
Q ss_pred CCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC-CCeEEEEEcCCCcEEEEecCCcccCC
Q psy731 235 PLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDP 313 (494)
Q Consensus 235 p~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~-~~gliVydl~~~~swrv~~~~~~~dP 313 (494)
. ....... + .++..+|.+|-. .+.|.++|+.+++..++.....
T Consensus 279 ---------------------~-------~~~~~~s--~--dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~---- 322 (417)
T TIGR02800 279 ---------------------I-------DTEPSWS--P--DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG---- 322 (417)
T ss_pred ---------------------C-------CCCEEEC--C--CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC----
Confidence 0 0001111 1 123455666643 4578899998887666542210
Q ss_pred CCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC--cceEeee
Q psy731 314 LFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS--TTEFAVT 361 (494)
Q Consensus 314 ~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss--~~ly~V~ 361 (494)
.....++||+ ++.|+|....+ .++|.++
T Consensus 323 ----------------~~~~~~~spd----g~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 323 ----------------YNASPSWSPD----GDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred ----------------CccCeEECCC----CCEEEEEEccCCceEEEEEe
Confidence 1233677876 36888876654 2445544
No 90
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=74.78 E-value=1.1e+02 Score=31.79 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=20.2
Q ss_pred CCcEEEEeeCC-CCeEEEEEccCCceeEE
Q psy731 199 DNAFLYIADSG-HNHIVVYNYRTNDSHII 226 (494)
Q Consensus 199 ~~~~vYItDs~-~~~iIVyd~~~~~~~rv 226 (494)
++..+|++... ...|.+||+.+++..++
T Consensus 201 g~~la~~~~~~~~~~i~v~d~~~g~~~~~ 229 (417)
T TIGR02800 201 GQKLAYVSFESGKPEIYVQDLATGQREKV 229 (417)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEe
Confidence 45566666443 35799999999987776
No 91
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.48 E-value=16 Score=25.20 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=27.4
Q ss_pred CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCC
Q psy731 137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKE 176 (494)
Q Consensus 137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~ 176 (494)
..+|||.+.+.. .|.++|+.+.++++++....
T Consensus 3 ~~~lyv~~~~~~--------~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 3 GTKLYVTNSGSN--------TVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCEEEEEeCCCC--------EEEEEECCCCeEEEEEECCC
Confidence 457999998877 89999999999999998754
No 92
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=74.37 E-value=1.2e+02 Score=31.92 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=32.0
Q ss_pred ceEEecccCCCCCCCeEEeeC-----CCCeEEEeccCCCeEEEEeCCCC
Q psy731 378 DFKVMGSRGTGSQSGASSLDE-----ETGVIFYALLVKSGVGCWNTFRG 421 (494)
Q Consensus 378 ~v~~~G~~G~~~qs~g~~~D~-----~~G~ly~~~~~~~aI~~w~~~~~ 421 (494)
-++.+.++|..-..=||++-| -.|.|.++......|..+|+..|
T Consensus 233 l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 233 LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 344455566555566777732 46789999999999999999765
No 93
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.23 E-value=5.5 Score=27.67 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.5
Q ss_pred CCcEEEEeeCCCCeEEEEEccCCce
Q psy731 199 DNAFLYIADSGHNHIVVYNYRTNDS 223 (494)
Q Consensus 199 ~~~~vYItDs~~~~iIVyd~~~~~~ 223 (494)
++.++|+++.+.+.|.++|..+++.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeE
Confidence 5678999999999999999976654
No 94
>PRK02889 tolB translocation protein TolB; Provisional
Probab=72.59 E-value=1.4e+02 Score=31.91 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=33.3
Q ss_pred CCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee-CCCCeEEEEEccCCceeEEe
Q psy731 155 PPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD-SGHNHIVVYNYRTNDSHIIH 227 (494)
Q Consensus 155 ~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD-s~~~~iIVyd~~~~~~~rv~ 227 (494)
.|.|..+|+.+++..+.-.++. ....++. ..+++..+|.++ .+...|.++|+..+...+++
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g--------~~~~~~~----SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKG--------SNSAPAW----SPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCC--------CccceEE----CCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 4667777777776543222222 1112222 122344445443 45567889998888877773
No 95
>KOG0646|consensus
Probab=71.61 E-value=1.6e+02 Score=32.28 Aligned_cols=274 Identities=14% Similarity=0.210 Sum_probs=143.7
Q ss_pred hccCCcccCCCeeeeeeeeCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccC-CCcccccccCCCce----
Q psy731 53 QTRGQFVAENCLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPY-PSWESNVREARNLT---- 127 (494)
Q Consensus 53 ~~~g~y~p~~~~p~gv~v~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PY-P~~~~n~~~~~~lv---- 127 (494)
+.++.+.|.|++...+ ..|---+++-.=..-.+.+|+-+...-- - .+-.-+|+ +-|+|++. +.++
T Consensus 10 ~sssS~d~~~~~~~dl--~TGt~~~~ykg~~~a~~~sl~~l~~~yl---l---saq~~rp~l~vw~i~k~--~~~~q~~v 79 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDL--RTGTSLLQYKGSYLAQAASLTALNNEYL---L---SAQLKRPLLHVWEILKK--DQVVQYIV 79 (476)
T ss_pred EeccCCCCcceeEEec--CCCceeEEecCcccccchhhhhhchhhe---e---eecccCccccccccCch--hhhhhhcc
Confidence 3556666777665543 3455555542211123445555442110 0 01122333 44667743 3222
Q ss_pred ---EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731 128 ---SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY 204 (494)
Q Consensus 128 ---sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY 204 (494)
-|..+..+.||.. ++=.+.. -+|..|.+.||.++..+ ..+.+++..=. --+++-..
T Consensus 80 ~Pg~v~al~s~n~G~~-l~ag~i~-------g~lYlWelssG~LL~v~----------~aHYQ~ITcL~---fs~dgs~i 138 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYF-LLAGTIS-------GNLYLWELSSGILLNVL----------SAHYQSITCLK---FSDDGSHI 138 (476)
T ss_pred cccceeeeecCCCceE-EEeeccc-------CcEEEEEeccccHHHHH----------HhhccceeEEE---EeCCCcEE
Confidence 1344555666644 4322222 17999999999987533 22455555111 01567788
Q ss_pred EeeCCCCeEEEEEccCCc----------eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecC
Q psy731 205 IADSGHNHIVVYNYRTND----------SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSA 274 (494)
Q Consensus 205 ItDs~~~~iIVyd~~~~~----------~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~ 274 (494)
||=+..++++||++.+=- .+.+++|.+ -.+++.+.. +
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-------------------------------sITDl~ig~--G 185 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-------------------------------SITDLQIGS--G 185 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcc-------------------------------eeEEEEecC--C
Confidence 999999999999875421 111222111 134555553 2
Q ss_pred CCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC
Q psy731 275 NCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS 354 (494)
Q Consensus 275 ~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss 354 (494)
.| ++++|-+ +.+.-+-+||+..+. +.- ++.++.-+..+||+|- .+.+|...--|
T Consensus 186 g~-~~rl~Ta-S~D~t~k~wdlS~g~---LLl-----------------ti~fp~si~av~lDpa----e~~~yiGt~~G 239 (476)
T KOG0646|consen 186 GT-NARLYTA-SEDRTIKLWDLSLGV---LLL-----------------TITFPSSIKAVALDPA----ERVVYIGTEEG 239 (476)
T ss_pred Cc-cceEEEe-cCCceEEEEEeccce---eeE-----------------EEecCCcceeEEEccc----ccEEEecCCcc
Confidence 23 4555554 356677788888773 111 2233445777999885 46777755444
Q ss_pred cceEeeechhhc-------CCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731 355 TTEFAVTTKVLQ-------NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR 420 (494)
Q Consensus 355 ~~ly~V~T~~L~-------~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~ 420 (494)
+.|-+.-..+. .+....+ ..+--...|.++. ++-.=+++. -+|+|..+--+.+.|-.||+..
T Consensus 240 -~I~~~~~~~~~~~~~~v~~k~~~~~-~t~~~~~~Gh~~~-~~ITcLais-~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 240 -KIFQNLLFKLSGQSAGVNQKGRHEE-NTQINVLVGHENE-SAITCLAIS-TDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred -eEEeeehhcCCcccccccccccccc-cceeeeeccccCC-cceeEEEEe-cCccEEEeeCCCCCEEEEecch
Confidence 44444322222 0111111 1111122355542 345567777 7798888888899999999864
No 96
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=70.84 E-value=12 Score=25.71 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=27.9
Q ss_pred ccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCC
Q psy731 182 EESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTN 221 (494)
Q Consensus 182 ~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~ 221 (494)
.-+..+.+++|. .+..+|.+|+....|-++++...
T Consensus 7 ~~~~~~~la~d~-----~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDW-----IEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEee-----cCCEEEEEeCCCCEEEEEeCCCC
Confidence 344556788875 77899999999999999988654
No 97
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=70.09 E-value=1.7e+02 Score=31.96 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=47.4
Q ss_pred CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC--------
Q psy731 137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS-------- 208 (494)
Q Consensus 137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs-------- 208 (494)
.+++++-+... .|+++|.+|++++-++++.... .........++|+ ++.+|+..+
T Consensus 110 ~~~V~v~~~~g---------~v~AlD~~TG~~~W~~~~~~~~-~~~~~i~ssP~v~-------~~~v~vg~~~~~~~~~~ 172 (488)
T cd00216 110 PRKVFFGTFDG---------RLVALDAETGKQVWKFGNNDQV-PPGYTMTGAPTIV-------KKLVIIGSSGAEFFACG 172 (488)
T ss_pred CCeEEEecCCC---------eEEEEECCCCCEeeeecCCCCc-CcceEecCCCEEE-------CCEEEEeccccccccCC
Confidence 47888766432 6999999999999888876521 0001123445553 366777643
Q ss_pred CCCeEEEEEccCCc-eeEE
Q psy731 209 GHNHIVVYNYRTND-SHII 226 (494)
Q Consensus 209 ~~~~iIVyd~~~~~-~~rv 226 (494)
..+.++.+|..+|+ .|++
T Consensus 173 ~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 173 VRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCcEEEEEECCCCceeeEe
Confidence 24579999998776 6777
No 98
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=70.00 E-value=98 Score=31.19 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=78.1
Q ss_pred eeeeeeeeCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCc-cccCCCcccccc---cCCCceEEeeEEEcCCCe
Q psy731 64 LPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPI-LMPYPSWESNVR---EARNLTSVVKVQSDPCDR 139 (494)
Q Consensus 64 ~p~gv~v~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~-l~PYP~~~~n~~---~~~~lvsV~~i~iD~~~~ 139 (494)
-=+|-.|.+|-+|-.-- -+.++...++... +-. -.+-|++..+.. .+ +=-+-..+.+|++|
T Consensus 70 ~GtG~vVYngslYY~~~-----~s~~IvkydL~t~--------~v~~~~~L~~A~~~n~~~y~~-~~~t~iD~AvDE~G- 134 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTR--------SVVARRELPGAGYNNRFPYYW-SGYTDIDFAVDENG- 134 (250)
T ss_pred ccCCeEEECCcEEEEec-----CCceEEEEECcCC--------cEEEEEECCccccccccceec-CCCceEEEEEcCCC-
Confidence 33566677787775432 3456777766542 111 335666655422 12 22455688999887
Q ss_pred EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCC----eEEE
Q psy731 140 LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHN----HIVV 215 (494)
Q Consensus 140 LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~----~iIV 215 (494)
|||+=.-..+. +.-.|-.+|..+=++.+++...- ...+.-+-++| | +.+|.+|+... =-.+
T Consensus 135 LWvIYat~~~~---g~ivvskld~~tL~v~~tw~T~~----~k~~~~naFmv------C--GvLY~~~s~~~~~~~I~ya 199 (250)
T PF02191_consen 135 LWVIYATEDNN---GNIVVSKLDPETLSVEQTWNTSY----PKRSAGNAFMV------C--GVLYATDSYDTRDTEIFYA 199 (250)
T ss_pred EEEEEecCCCC---CcEEEEeeCcccCceEEEEEecc----CchhhcceeeE------e--eEEEEEEECCCCCcEEEEE
Confidence 99993333211 11267778888888888886433 23344455555 2 56788887652 2568
Q ss_pred EEccCCceeEE
Q psy731 216 YNYRTNDSHII 226 (494)
Q Consensus 216 yd~~~~~~~rv 226 (494)
||+.+++...+
T Consensus 200 fDt~t~~~~~~ 210 (250)
T PF02191_consen 200 FDTYTGKEEDV 210 (250)
T ss_pred EECCCCceece
Confidence 88887777554
No 99
>PRK03629 tolB translocation protein TolB; Provisional
Probab=69.58 E-value=1.6e+02 Score=31.48 Aligned_cols=72 Identities=8% Similarity=0.115 Sum_probs=42.3
Q ss_pred CCcEEEEeeC-CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731 199 DNAFLYIADS-GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD 277 (494)
Q Consensus 199 ~~~~vYItDs-~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~ 277 (494)
++.-+|+++. +...|.+||++++...++.+... ....+... + .+
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~-------------------------------~~~~~~wS--P--DG 298 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-------------------------------NNTEPTWF--P--DS 298 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC-------------------------------CcCceEEC--C--CC
Confidence 3444455453 33469999999999888843111 00111111 1 13
Q ss_pred CcEEEEecCC-CCeEEEEEcCCCcEEEEe
Q psy731 278 DAFLYIADSG-HNHIVVYNYRTNDSHIIH 305 (494)
Q Consensus 278 ~~~~YI~D~~-~~gliVydl~~~~swrv~ 305 (494)
+..+|.+|-. ...|.++|+.++...++.
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 5677888754 457888888888766664
No 100
>KOG0322|consensus
Probab=69.47 E-value=60 Score=33.41 Aligned_cols=84 Identities=25% Similarity=0.455 Sum_probs=48.5
Q ss_pred ceEEeeEEEc-CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCC--CccccccCCccceE-EEeecCCCCCc
Q psy731 126 LTSVVKVQSD-PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKE--KTDYTEESKFSNMV-VDVTSANCDNA 201 (494)
Q Consensus 126 lvsV~~i~iD-~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~--~~~~~~~S~l~d~v-VD~~~~~c~~~ 201 (494)
+-||.-...| +|+.-.++=.|.. +-.++.||+.++.++ ++||. ++.+.-.|.-+.+- +|+. ..|+++
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyE------sghvv~wd~S~~~~~--~~~~~~~kv~~~~ash~qpvlsldya-s~~~rG 220 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYE------SGHVVIWDLSTGDKI--IQLPQSSKVESPNASHKQPVLSLDYA-SSCDRG 220 (323)
T ss_pred cCceeeeeccccccceEEEEEecc------CCeEEEEEccCCcee--eccccccccccchhhccCcceeeeec-hhhcCC
Confidence 3344433322 3555555555554 348999999998544 56665 22232333333322 5543 455555
Q ss_pred EEEEeeCCCCeEEEEEccCC
Q psy731 202 FLYIADSGHNHIVVYNYRTN 221 (494)
Q Consensus 202 ~vYItDs~~~~iIVyd~~~~ 221 (494)
|++....++++|++...
T Consensus 221 ---isgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 221 ---ISGGADDKLVMYSLNHS 237 (323)
T ss_pred ---cCCCccccceeeeeccc
Confidence 67778889999998766
No 101
>KOG2055|consensus
Probab=69.39 E-value=1.8e+02 Score=32.16 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=73.3
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCC
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL 236 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~ 236 (494)
.|..+|-+++..+..+.|.. +.++...+- .|+.. +-++=+.+.=+.+|||.+.+.-++...+-.+.+-
T Consensus 238 rifqvDGk~N~~lqS~~l~~-------fPi~~a~f~----p~G~~-~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 238 RIFQVDGKVNPKLQSIHLEK-------FPIQKAEFA----PNGHS-VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred EEEEecCccChhheeeeecc-------Cccceeeec----CCCce-EEEecccceEEEEeeccccccccccCCCCcccch
Confidence 66677777777776666644 233333332 12222 4455555566999999999998886655555555
Q ss_pred CCcc---------ccCCccceeeeecccccc-----cccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCC
Q psy731 237 FGDF---------TIGGEYSEFFQLKEKTDY-----TEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTN 299 (494)
Q Consensus 237 ~~~f---------~i~g~~~~~f~l~~~~~~-----~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~ 299 (494)
+..| .|+|-.+|+--|+.++-. +-.....++.++ .+...+|+.-. ..-+.|||++.+
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fs-----Sdsk~l~~~~~-~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFS-----SDSKELLASGG-TGEVYVWNLRQN 376 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEe-----cCCcEEEEEcC-CceEEEEecCCc
Confidence 6566 457888888877653311 111222333333 13456666532 336788888877
No 102
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=69.25 E-value=94 Score=32.11 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=38.6
Q ss_pred CcEEEEecCCC------CeEEEEEcCCCcEEEEe-cCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEe
Q psy731 278 DAFLYIADSGH------NHIVVYNYRTNDSHIIH-HNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFH 350 (494)
Q Consensus 278 ~~~~YI~D~~~------~gliVydl~~~~swrv~-~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~ 350 (494)
++-+||++... +.|+.||....-.-++. -..+.+.+... ...+-.-|.=|||++|++ +.||..
T Consensus 95 ~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~------~~~~~N~G~E~la~~~dG----~~l~~~ 164 (326)
T PF13449_consen 95 DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGT------SGRRNNRGFEGLAVSPDG----RTLFAA 164 (326)
T ss_pred CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCcc------ccccCCCCeEEEEECCCC----CEEEEE
Confidence 46789999999 99999998833333442 12232221100 223345688899999973 567763
No 103
>KOG0315|consensus
Probab=68.79 E-value=1.4e+02 Score=30.54 Aligned_cols=225 Identities=18% Similarity=0.259 Sum_probs=122.2
Q ss_pred EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCc--EEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEE
Q psy731 128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQM--QIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYI 205 (494)
Q Consensus 128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~--vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYI 205 (494)
.|.++.+.++.+..+ ..|-|+|-.||++++. -+.+|+.+.+ ++. ..++.|+....|-
T Consensus 42 qVNrLeiTpdk~~LA---------aa~~qhvRlyD~~S~np~Pv~t~e~h~k----------NVt--aVgF~~dgrWMyT 100 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLA---------AAGNQHVRLYDLNSNNPNPVATFEGHTK----------NVT--AVGFQCDGRWMYT 100 (311)
T ss_pred ceeeEEEcCCcchhh---------hccCCeeEEEEccCCCCCceeEEeccCC----------ceE--EEEEeecCeEEEe
Confidence 356666665554332 3477899999999875 5788887752 222 1246788888874
Q ss_pred eeCCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731 206 ADSGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA 284 (494)
Q Consensus 206 tDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~ 284 (494)
-+-.+.+=|||++.-..-|. .+ .+..+.+++.. ..+-+...
T Consensus 101 -gseDgt~kIWdlR~~~~qR~~~~--------------------------------~spVn~vvlhp-----nQteLis~ 142 (311)
T KOG0315|consen 101 -GSEDGTVKIWDLRSLSCQRNYQH--------------------------------NSPVNTVVLHP-----NQTELISG 142 (311)
T ss_pred -cCCCceEEEEeccCcccchhccC--------------------------------CCCcceEEecC-----CcceEEee
Confidence 34556788999998666665 22 12345555542 35666666
Q ss_pred cCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCC-----CCCceeEEEeeCCCcceEe
Q psy731 285 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLT-----RDNFRVMYFHPLASTTEFA 359 (494)
Q Consensus 285 D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~-----~~g~r~LYf~plss~~ly~ 359 (494)
|- ...|-|||+.++. +.| -.-|+++. -+-++++.|++ .++....|.=-|.. +.+.
T Consensus 143 dq-sg~irvWDl~~~~---c~~-~liPe~~~--------------~i~sl~v~~dgsml~a~nnkG~cyvW~l~~-~~~~ 202 (311)
T KOG0315|consen 143 DQ-SGNIRVWDLGENS---CTH-ELIPEDDT--------------SIQSLTVMPDGSMLAAANNKGNCYVWRLLN-HQTA 202 (311)
T ss_pred cC-CCcEEEEEccCCc---ccc-ccCCCCCc--------------ceeeEEEcCCCcEEEEecCCccEEEEEccC-CCcc
Confidence 63 4468899998763 112 22344321 13345555543 11223455433222 1110
Q ss_pred eechhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCe
Q psy731 360 VTTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNAT 438 (494)
Q Consensus 360 V~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~ 438 (494)
..++.+-+ +.-++..--.-+. ..+....+--....+..|++++ -|+ .++..+..+|
T Consensus 203 -----------------s~l~P~~k~~ah~~~il~C~lS-Pd~k~lat~ssdktv~iwn~~~--~~k---le~~l~gh~r 259 (311)
T KOG0315|consen 203 -----------------SELEPVHKFQAHNGHILRCLLS-PDVKYLATCSSDKTVKIWNTDD--FFK---LELVLTGHQR 259 (311)
T ss_pred -----------------ccceEhhheecccceEEEEEEC-CCCcEEEeecCCceEEEEecCC--cee---eEEEeecCCc
Confidence 11111111 0001111223445 4566566667788899999998 332 4566666677
Q ss_pred EecccceEEcCCceEEEE
Q psy731 439 LIYPSDIRVDRTGVLWVL 456 (494)
Q Consensus 439 l~~pd~~~id~~g~Lwvl 456 (494)
-.|--.++. ||.-.|+
T Consensus 260 WvWdc~FS~--dg~YlvT 275 (311)
T KOG0315|consen 260 WVWDCAFSA--DGEYLVT 275 (311)
T ss_pred eEEeeeecc--CccEEEe
Confidence 777666665 4543343
No 104
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=68.49 E-value=1.8e+02 Score=31.58 Aligned_cols=31 Identities=13% Similarity=0.319 Sum_probs=26.2
Q ss_pred CCCCcEEEEeeCCC-CeEEEEEccCCceeEEe
Q psy731 197 NCDNAFLYIADSGH-NHIVVYNYRTNDSHIIH 227 (494)
Q Consensus 197 ~c~~~~vYItDs~~-~~iIVyd~~~~~~~rv~ 227 (494)
..++..||+||.++ ..|.+||+..+...|++
T Consensus 291 pdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 291 PDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred CCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 34788899999866 57999999999999994
No 105
>KOG0265|consensus
Probab=67.53 E-value=57 Score=34.00 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=37.1
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCC-CcEEEEeeCCCCeEEEEEccCCce
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCD-NAFLYIADSGHNHIVVYNYRTNDS 223 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~-~~~vYItDs~~~~iIVyd~~~~~~ 223 (494)
.+..||..|++.+|++.... ++.|.+-. |+ +...-.|=+-.+.+=|||+++..+
T Consensus 113 ~v~~wD~~tG~~~rk~k~h~-------~~vNs~~p------~rrg~~lv~SgsdD~t~kl~D~R~k~~ 167 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHKGHT-------SFVNSLDP------SRRGPQLVCSGSDDGTLKLWDIRKKEA 167 (338)
T ss_pred eEEEEecccceeeehhcccc-------ceeeecCc------cccCCeEEEecCCCceEEEEeecccch
Confidence 78899999999999887655 34444432 23 445555556667788888886665
No 106
>KOG0279|consensus
Probab=67.39 E-value=1.6e+02 Score=30.55 Aligned_cols=211 Identities=14% Similarity=0.157 Sum_probs=119.3
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCc------
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNY------ 230 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~------ 230 (494)
.|..||+.+++-.+++.-+.+.+ +-|+.. .+.---||=+....|..||...+-...+....
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dV---------lsva~s----~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDV---------LSVAFS----TDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCce---------EEEEec----CCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 67778888888888887655211 112221 12223466677788888888888777773332
Q ss_pred -cccCCCCCccccC--Cccc-------eeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCc
Q psy731 231 -LHFDPLFGDFTIG--GEYS-------EFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTND 300 (494)
Q Consensus 231 -~~~dp~~~~f~i~--g~~~-------~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~ 300 (494)
+.+-|...+..|. |+-. .-|++.. +......+.+.++|-....-|. +--.+.-+..|||+.++
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~-~~~gh~~~v~t~~vSpDGslca------sGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT-TFIGHSGYVNTVTVSPDGSLCA------SGGKDGEAMLWDLNEGK 225 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhh-ccccccccEEEEEECCCCCEEe------cCCCCceEEEEEccCCc
Confidence 3445555666663 2211 1233322 2333445666677665433342 21223457788888776
Q ss_pred EEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceE
Q psy731 301 SHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFK 380 (494)
Q Consensus 301 swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~ 380 (494)
- ++ .+.-.+-|+.++.||. .-||--..-+|-++|...++..-++- ..++.
T Consensus 226 ~-------ly-------------sl~a~~~v~sl~fspn----rywL~~at~~sIkIwdl~~~~~v~~l------~~d~~ 275 (315)
T KOG0279|consen 226 N-------LY-------------SLEAFDIVNSLCFSPN----RYWLCAATATSIKIWDLESKAVVEEL------KLDGI 275 (315)
T ss_pred e-------eE-------------eccCCCeEeeEEecCC----ceeEeeccCCceEEEeccchhhhhhc------ccccc
Confidence 3 11 1111234889999984 24555555556688888776653322 11111
Q ss_pred EecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeC
Q psy731 381 VMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNT 418 (494)
Q Consensus 381 ~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~ 418 (494)
-.+.+...+++-.++-. ++|.-.|+-...+.|..|-.
T Consensus 276 g~s~~~~~~~clslaws-~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 276 GPSSKAGDPICLSLAWS-ADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred ccccccCCcEEEEEEEc-CCCcEEEeeecCCcEEEEEe
Confidence 11234445778888888 78855566667788888854
No 107
>KOG0286|consensus
Probab=66.21 E-value=1.4e+02 Score=31.13 Aligned_cols=127 Identities=12% Similarity=0.228 Sum_probs=79.9
Q ss_pred CCCEEEEEECCCCcEEEEEEcCCCccccccCCccce-EEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccc
Q psy731 154 QPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNM-VVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH 232 (494)
Q Consensus 154 ~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~-vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~ 232 (494)
+--....||+++++.+..|.= +.-|+ .+|+.+. +..-|||=+-...-.+||++.+...+-
T Consensus 164 GD~TCalWDie~g~~~~~f~G----------H~gDV~slsl~p~---~~ntFvSg~cD~~aklWD~R~~~c~qt------ 224 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQVFHG----------HTGDVMSLSLSPS---DGNTFVSGGCDKSAKLWDVRSGQCVQT------ 224 (343)
T ss_pred CCceEEEEEcccceEEEEecC----------CcccEEEEecCCC---CCCeEEecccccceeeeeccCcceeEe------
Confidence 445778899999999987752 22233 3665432 667788888888889999999977655
Q ss_pred cCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccC
Q psy731 233 FDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFD 312 (494)
Q Consensus 233 ~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~d 312 (494)
|.-.| +-++.+..-. +++++.+-+.+...-.||++.++.--+-. .+
T Consensus 225 -----------------F~ghe-------sDINsv~ffP------~G~afatGSDD~tcRlyDlRaD~~~a~ys----~~ 270 (343)
T KOG0286|consen 225 -----------------FEGHE-------SDINSVRFFP------SGDAFATGSDDATCRLYDLRADQELAVYS----HD 270 (343)
T ss_pred -----------------ecccc-------cccceEEEcc------CCCeeeecCCCceeEEEeecCCcEEeeec----cC
Confidence 11111 1233343332 35666776667777789998776543322 11
Q ss_pred CCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEe
Q psy731 313 PLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFH 350 (494)
Q Consensus 313 P~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~ 350 (494)
+ -..|+.++++|.. +|.||-.
T Consensus 271 ~-------------~~~gitSv~FS~S----GRlLfag 291 (343)
T KOG0286|consen 271 S-------------IICGITSVAFSKS----GRLLFAG 291 (343)
T ss_pred c-------------ccCCceeEEEccc----ccEEEee
Confidence 1 1357899999965 3666653
No 108
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=65.70 E-value=75 Score=32.46 Aligned_cols=119 Identities=22% Similarity=0.233 Sum_probs=70.2
Q ss_pred cCCCeeeeeeeeCCcEEEEecCCCCCCC-----ceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEE
Q psy731 60 AENCLPVSLDKWHDRLFLAVPRHKNGVP-----STLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQS 134 (494)
Q Consensus 60 p~~~~p~gv~v~~gRlFvt~PR~~~gvp-----~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~i 134 (494)
|....--|+++.++++|+=. |+.|+- .||..+. --+||..-| +|. .
T Consensus 87 ~~~~FgEGit~~~d~l~qLT--Wk~~~~f~yd~~tl~~~~---------------~~~y~~EGW------GLt------~ 137 (264)
T PF05096_consen 87 PPRYFGEGITILGDKLYQLT--WKEGTGFVYDPNTLKKIG---------------TFPYPGEGW------GLT------S 137 (264)
T ss_dssp TTT--EEEEEEETTEEEEEE--SSSSEEEEEETTTTEEEE---------------EEE-SSS--------EEE------E
T ss_pred CccccceeEEEECCEEEEEE--ecCCeEEEEccccceEEE---------------EEecCCcce------EEE------c
Confidence 34555679999999999988 887742 2343332 237887666 344 2
Q ss_pred cCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEE
Q psy731 135 DPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIV 214 (494)
Q Consensus 135 D~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iI 214 (494)
| ..+||+=| |+. +|..+|.++=++.+++.... .-.+-..||.+-. -++++|--==..+.|+
T Consensus 138 d-g~~Li~SD-GS~--------~L~~~dP~~f~~~~~i~V~~--~g~pv~~LNELE~-------i~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 138 D-GKRLIMSD-GSS--------RLYFLDPETFKEVRTIQVTD--NGRPVSNLNELEY-------INGKIYANVWQTDRIV 198 (264)
T ss_dssp C-SSCEEEE--SSS--------EEEEE-TTT-SEEEEEE-EE--TTEE---EEEEEE-------ETTEEEEEETTSSEEE
T ss_pred C-CCEEEEEC-Ccc--------ceEEECCcccceEEEEEEEE--CCEECCCcEeEEE-------EcCEEEEEeCCCCeEE
Confidence 2 33565554 344 67777877777778777654 2345566777763 3677776555668899
Q ss_pred EEEccCCceeEE
Q psy731 215 VYNYRTNDSHII 226 (494)
Q Consensus 215 Vyd~~~~~~~rv 226 (494)
+.|..+|.--..
T Consensus 199 ~Idp~tG~V~~~ 210 (264)
T PF05096_consen 199 RIDPETGKVVGW 210 (264)
T ss_dssp EEETTT-BEEEE
T ss_pred EEeCCCCeEEEE
Confidence 999999998666
No 109
>PTZ00420 coronin; Provisional
Probab=65.15 E-value=2.5e+02 Score=31.87 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCeEEEEEcCCCcEEEE
Q psy731 278 DAFLYIADSGHNHIVVYNYRTNDSHII 304 (494)
Q Consensus 278 ~~~~YI~D~~~~gliVydl~~~~swrv 304 (494)
.+.+|++-.++..|-+|++..+....+
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCcEEee
Confidence 467788877888899999988754444
No 110
>KOG0263|consensus
Probab=64.30 E-value=2.7e+02 Score=32.37 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=65.1
Q ss_pred EEEec-CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceE
Q psy731 281 LYIAD-SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEF 358 (494)
Q Consensus 281 ~YI~D-~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly 358 (494)
+|++- +.+...=+||..++.+.|+-.. +-.| |-.++.||.+ |+|=-..-.+. ++|
T Consensus 548 ~Y~aTGSsD~tVRlWDv~~G~~VRiF~G--H~~~-----------------V~al~~Sp~G----r~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDVSTGNSVRIFTG--HKGP-----------------VTALAFSPCG----RYLASGDEDGLIKIW 604 (707)
T ss_pred cccccCCCCceEEEEEcCCCcEEEEecC--CCCc-----------------eEEEEEcCCC----ceEeecccCCcEEEE
Confidence 45554 3356777999999999998522 1112 5568888862 55544444443 556
Q ss_pred eeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731 359 AVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR 420 (494)
Q Consensus 359 ~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~ 420 (494)
.+.+.-| -.+..|++| .-..+.+. ..|++..+.-..|.|..||-.+
T Consensus 605 Dl~~~~~------------v~~l~~Ht~---ti~SlsFS-~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 605 DLANGSL------------VKQLKGHTG---TIYSLSFS-RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EcCCCcc------------hhhhhcccC---ceeEEEEe-cCCCEEEecCCCCeEEEEEchh
Confidence 6655322 012234442 34567887 8999999999999999999887
No 111
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.57 E-value=1.6e+02 Score=30.77 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=78.8
Q ss_pred EeeEEEcCCC-eEEEEeCCCCC---------CCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCC
Q psy731 129 VVKVQSDPCD-RLWALDSGVVE---------GKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANC 198 (494)
Q Consensus 129 V~~i~iD~~~-~LwvlD~G~~~---------~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c 198 (494)
...+...+++ .|.|-.-|... +--.-.|.|+..|..+++++.+..||++. ...-+.-+.++
T Consensus 101 PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~---~~lSiRHLa~~------ 171 (305)
T PF07433_consen 101 PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL---HQLSIRHLAVD------ 171 (305)
T ss_pred hhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc---cccceeeEEec------
Confidence 3444455666 56665444433 11234789999999999999999998721 22234555554
Q ss_pred CCcEEEEe-----eCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeec
Q psy731 199 DNAFLYIA-----DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTS 273 (494)
Q Consensus 199 ~~~~vYIt-----Ds~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~ 273 (494)
.++.|.++ |.+...=+|.-.+.|..- +.|..+++....=..+..+|+++.
T Consensus 172 ~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-----------------------~~~~~p~~~~~~l~~Y~gSIa~~~-- 226 (305)
T PF07433_consen 172 GDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-----------------------RLLPAPEEQWRRLNGYIGSIAADR-- 226 (305)
T ss_pred CCCcEEEEEecCCCCCccCCeEEEEcCCCcc-----------------------eeccCChHHHHhhCCceEEEEEeC--
Confidence 23444443 222223333333333321 123333322222235677888874
Q ss_pred CCCCCcEEEEecCCCCeEEEEEcCCCcE
Q psy731 274 ANCDDAFLYIADSGHNHIVVYNYRTNDS 301 (494)
Q Consensus 274 ~~c~~~~~YI~D~~~~gliVydl~~~~s 301 (494)
+..++.++=..++.+.+||.++++.
T Consensus 227 ---~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 227 ---DGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred ---CCCEEEEECCCCCEEEEEECCCCCE
Confidence 3568888888899999999998874
No 112
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=61.84 E-value=23 Score=39.72 Aligned_cols=67 Identities=18% Similarity=0.411 Sum_probs=48.2
Q ss_pred CCCeEEeeCCCCeEEEeccCCC----------------eEEEEeCCCC----cccccccee--eeeecCCeEec------
Q psy731 390 QSGASSLDEETGVIFYALLVKS----------------GVGCWNTFRG----EEYNEKSMG--LVAEDNATLIY------ 441 (494)
Q Consensus 390 qs~g~~~D~~~G~ly~~~~~~~----------------aI~~w~~~~~----~~~~~~~~~--~v~~d~~~l~~------ 441 (494)
..-++++.|.+|.+|+++.+.. .|.+|-+.++ ++| ..+ +.+.++..+.-
T Consensus 418 RpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~f---tWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 418 RPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKF---TWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred CccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccc---eeeeeeecCCccccccccccCc
Confidence 3567888888999999998766 5899988663 122 122 23344444555
Q ss_pred -------ccceEEcCCceEEEEecC
Q psy731 442 -------PSDIRVDRTGVLWVLSNK 459 (494)
Q Consensus 442 -------pd~~~id~~g~Lwvlsnr 459 (494)
||++.+|+.|.|||-+..
T Consensus 495 ~~~~f~~PDnl~fD~~GrLWi~TDg 519 (616)
T COG3211 495 NANWFNSPDNLAFDPWGRLWIQTDG 519 (616)
T ss_pred ccccccCCCceEECCCCCEEEEecC
Confidence 999999999999999744
No 113
>smart00284 OLF Olfactomedin-like domains.
Probab=59.71 E-value=2.1e+02 Score=29.17 Aligned_cols=157 Identities=10% Similarity=0.098 Sum_probs=87.3
Q ss_pred eeCCCHHHHHHhhccCCc-ccCCCeeeeeeeeCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccc
Q psy731 41 FAFPNEEERRLAQTRGQF-VAENCLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESN 119 (494)
Q Consensus 41 f~~p~~~~r~~~~~~g~y-~p~~~~p~gv~v~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n 119 (494)
++|++.++-.....+..| .|+...=+|..|.+|-+|-.- . -..++....+... . --..+.-|++..|
T Consensus 51 ~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~--~---~s~~iiKydL~t~----~---v~~~~~Lp~a~y~ 118 (255)
T smart00284 51 REYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNK--F---NSHDICRFDLTTE----T---YQKEPLLNGAGYN 118 (255)
T ss_pred EEecCHHHHhccCCceEEECCCccccccEEEECceEEEEe--c---CCccEEEEECCCC----c---EEEEEecCccccc
Confidence 467776654433332222 445555578888899998743 2 1245777766542 1 1122445555444
Q ss_pred cc--cCCCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCC
Q psy731 120 VR--EARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSAN 197 (494)
Q Consensus 120 ~~--~~~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~ 197 (494)
.. -+-+=-+-..+.+|+.| |||+=....+.. .=.|-++|..|=++.++...+- ...|.=+-++|
T Consensus 119 ~~~~Y~~~~~sdiDlAvDE~G-LWvIYat~~~~g---~ivvSkLnp~tL~ve~tW~T~~----~k~sa~naFmv------ 184 (255)
T smart00284 119 NRFPYAWGGFSDIDLAVDENG-LWVIYATEQNAG---KIVISKLNPATLTIENTWITTY----NKRSASNAFMI------ 184 (255)
T ss_pred cccccccCCCccEEEEEcCCc-eEEEEeccCCCC---CEEEEeeCcccceEEEEEEcCC----CcccccccEEE------
Confidence 32 11122456788999887 999933322101 0045577877778888887643 23344455555
Q ss_pred CCCcEEEEeeCC--CCe--EEEEEccCCceeE
Q psy731 198 CDNAFLYIADSG--HNH--IVVYNYRTNDSHI 225 (494)
Q Consensus 198 c~~~~vYItDs~--~~~--iIVyd~~~~~~~r 225 (494)
| +.+|++++. ..+ -.+||..+++.-.
T Consensus 185 C--GvLY~~~s~~~~~~~I~yayDt~t~~~~~ 214 (255)
T smart00284 185 C--GILYVTRSLGSKGEKVFYAYDTNTGKEGH 214 (255)
T ss_pred e--eEEEEEccCCCCCcEEEEEEECCCCccce
Confidence 3 567888862 234 5667766655433
No 114
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=58.09 E-value=3.1e+02 Score=30.66 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=44.4
Q ss_pred EecCCCCeEEEEEcCCCcEEEEecC-----CcccCCCCcceEEcCEEeeee-----------------cceeeeeeccCC
Q psy731 283 IADSGHNHIVVYNYRTNDSHIIHHN-----YLHFDPLFGDFTIGGVNFQWQ-----------------TGIHGMSLSPLT 340 (494)
Q Consensus 283 I~D~~~~gliVydl~~~~swrv~~~-----~~~~dP~~~~~~v~G~~f~~~-----------------~Gi~gIaLsp~~ 340 (494)
|.+-.+..|.|||..++++-|++.+ +++-+|.--...++..+|++. .=|-+++.+|.
T Consensus 376 igt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n- 454 (668)
T COG4946 376 IGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN- 454 (668)
T ss_pred EeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC-
Confidence 4444566788999999998888753 455555322244555566542 12677888875
Q ss_pred CCCceeEEEeeCCCc
Q psy731 341 RDNFRVMYFHPLAST 355 (494)
Q Consensus 341 ~~g~r~LYf~plss~ 355 (494)
.||+-|.-.+|.
T Consensus 455 ---sr~iAYafP~gy 466 (668)
T COG4946 455 ---SRWIAYAFPEGY 466 (668)
T ss_pred ---ceeEEEecCcce
Confidence 589888655554
No 115
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.76 E-value=73 Score=33.27 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=81.8
Q ss_pred EcCCCeEEEEeCCCCC-----C-----CCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceE-EEeecCCCCCcE
Q psy731 134 SDPCDRLWALDSGVVE-----G-----KMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMV-VDVTSANCDNAF 202 (494)
Q Consensus 134 iD~~~~LwvlD~G~~~-----~-----~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~v-VD~~~~~c~~~~ 202 (494)
.=.+||+.|+=.|-.+ + -..-.|.|+-+|..|++++.+..||++ -...+++ +|.- .++.
T Consensus 169 lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~------l~~lSiRHld~g----~dgt 238 (366)
T COG3490 169 LMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS------LRQLSIRHLDIG----RDGT 238 (366)
T ss_pred EecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh------hhhcceeeeeeC----CCCc
Confidence 3356788887666333 1 123578999999999999999999972 1223333 4431 1222
Q ss_pred EEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731 203 LYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY 282 (494)
Q Consensus 203 vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y 282 (494)
|+..=. . ....-.--|+.+.|. .|+-=++|.++|+..+.=..+...|++..+ ++.+-
T Consensus 239 vwfgcQ---------------y--~G~~~d~ppLvg~~~-~g~~l~~~~~pee~~~~~anYigsiA~n~~-----~glV~ 295 (366)
T COG3490 239 VWFGCQ---------------Y--RGPRNDLPPLVGHFR-KGEPLEFLDLPEEQTAAFANYIGSIAANRR-----DGLVA 295 (366)
T ss_pred EEEEEE---------------e--eCCCccCCcceeecc-CCCcCcccCCCHHHHHHHHhhhhheeeccc-----CCeEE
Confidence 222100 0 111111123444443 455556788887444433456677777643 57777
Q ss_pred EecCCCCeEEEEEcCCCcEEE
Q psy731 283 IADSGHNHIVVYNYRTNDSHI 303 (494)
Q Consensus 283 I~D~~~~gliVydl~~~~swr 303 (494)
++-..++..++||.+++.-.+
T Consensus 296 lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 296 LTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred EecCCCCeEEEEEcCCCcEEe
Confidence 888889999999999997543
No 116
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=56.54 E-value=2.6e+02 Score=29.42 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=24.1
Q ss_pred CCcEEEEeeCCCCeEEEEEccCCceeEEec
Q psy731 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHH 228 (494)
Q Consensus 199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~ 228 (494)
...++|+||- .++++++|+.+.+.=.+..
T Consensus 137 sGn~aYVadl-ddgfLivdvsdpssP~lag 165 (370)
T COG5276 137 SGNYAYVADL-DDGFLIVDVSDPSSPQLAG 165 (370)
T ss_pred cCCEEEEeec-cCcEEEEECCCCCCceeee
Confidence 5789999998 7899999999988766633
No 117
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=56.22 E-value=19 Score=30.42 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=35.9
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCC
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTN 221 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~ 221 (494)
-++-||.++-++ +...-++.|.|.+|. ++.++||++.....|-||..+++
T Consensus 37 ~Vvyyd~~~~~~----------va~g~~~aNGI~~s~-----~~k~lyVa~~~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 37 NVVYYDGKEVKV----------VASGFSFANGIAISP-----DKKYLYVASSLAHSIHVYKRHKD 86 (86)
T ss_pred eEEEEeCCEeEE----------eeccCCCCceEEEcC-----CCCEEEEEeccCCeEEEEEecCC
Confidence 566667654322 223446677888875 67899999999999999987653
No 118
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.03 E-value=1.8e+02 Score=32.10 Aligned_cols=127 Identities=12% Similarity=0.144 Sum_probs=72.0
Q ss_pred EEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccC---CCcccccc----cCCCceEEeeEEEcCCCeEEEEeCCC
Q psy731 75 LFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPY---PSWESNVR----EARNLTSVVKVQSDPCDRLWALDSGV 147 (494)
Q Consensus 75 lFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PY---P~~~~n~~----~~~~lvsV~~i~iD~~~~LwvlD~G~ 147 (494)
-+....||.+..|.-+.++....+ ..++=| |..-||-. .|++.+-+--+..|.- -=.+|.+.
T Consensus 261 ~~~~~~~~~pe~ptri~V~pR~g~---------~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~--~~~~~~~~ 329 (490)
T COG3670 261 ADGHAMRWRPELPTRILVLPREGD---------SEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDF--SQTLDTLG 329 (490)
T ss_pred ccccceeecCCCCcEEEEEccCCC---------CceeEEecCCeEEEEecceeecCCCcEEEEEEeeccc--cccccccc
Confidence 377778888889988888875311 122222 34444432 4555444433333211 12334433
Q ss_pred CCC----CCCCCCEEEEE--ECCCCcEE------EEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCC-----
Q psy731 148 VEG----KMEQPPSVQVY--DLRQQMQI------RFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGH----- 210 (494)
Q Consensus 148 ~~~----~~~~~Pklv~~--dl~t~~vi------~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~----- 210 (494)
... ....+|+|+++ |++|+++- +.-+||. |+-+...-...|.|.+=+..
T Consensus 330 ~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~r~~EFP~--------------in~~~~G~p~RY~Y~~~~rp~~~l~ 395 (490)
T COG3670 330 EGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLDDRACEFPR--------------INPRYVGQPYRYTYMSGARPGTFLF 395 (490)
T ss_pred ccccccccccCCCcceEEEEccccchhHHHhhhhhhcccCc--------------cChhhcCCceEEEEEecccCCccch
Confidence 321 12337889887 88898642 3334444 44333333457888883322
Q ss_pred ---CeEEEEEccCCceeEE
Q psy731 211 ---NHIVVYNYRTNDSHII 226 (494)
Q Consensus 211 ---~~iIVyd~~~~~~~rv 226 (494)
.+|+.+|+.+|+.+..
T Consensus 396 ~g~~~l~k~D~~tg~~~~~ 414 (490)
T COG3670 396 QGLQTLAKHDLETGTSQVY 414 (490)
T ss_pred hhcceeEEEeccCCcEEEE
Confidence 2499999999999988
No 119
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=56.01 E-value=38 Score=35.84 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=53.0
Q ss_pred CcccCCCeeeeeeeeCCcEEEEecCCCCC---CCceeEEE-EccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeE
Q psy731 57 QFVAENCLPVSLDKWHDRLFLAVPRHKNG---VPSTLNYV-MLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKV 132 (494)
Q Consensus 57 ~y~p~~~~p~gv~v~~gRlFvt~PR~~~g---vp~TL~~v-~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i 132 (494)
...|+.--++.+....+||||-++.-..| -|+|=..+ ..+.. -.+.-.|- .+-+.-..+
T Consensus 234 ~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l--------~~~~~Si~V 296 (342)
T PF06433_consen 234 GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL--------EHPIDSIAV 296 (342)
T ss_dssp TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE--------EEEESEEEE
T ss_pred CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC--------CCccceEEE
Confidence 55666665666655689999999865443 46654444 33221 12222221 011212344
Q ss_pred EEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEE
Q psy731 133 QSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQ 173 (494)
Q Consensus 133 ~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~ 173 (494)
..|+.++|++++.+.. -|.+||..|++++++++
T Consensus 297 sqd~~P~L~~~~~~~~--------~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDG--------TLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ESSSS-EEEEEETTTT--------EEEEEETTT--EEEEE-
T ss_pred ccCCCcEEEEEcCCCC--------eEEEEeCcCCcEEeehh
Confidence 5688999999999887 79999999999999775
No 120
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=55.83 E-value=70 Score=33.09 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=47.7
Q ss_pred EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCc--------cccccCCccceEEE
Q psy731 128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKT--------DYTEESKFSNMVVD 192 (494)
Q Consensus 128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~--------~~~~~S~l~d~vVD 192 (494)
-..+|++...+.+||-+-+... ....|.|..||+. +++++++.+|... ....+..|..+++.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~--~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~ 155 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT--GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS 155 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC--CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC
Confidence 4556667789999999998853 2237899999988 9999999999853 13467778888875
No 121
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=55.50 E-value=2.6e+02 Score=28.99 Aligned_cols=64 Identities=13% Similarity=0.300 Sum_probs=39.8
Q ss_pred CCcEEEEecCCC-CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC--
Q psy731 277 DDAFLYIADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA-- 353 (494)
Q Consensus 277 ~~~~~YI~D~~~-~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls-- 353 (494)
+..|+++.+-.+ ..|..++..++....+++.. +.|.. -+++++. ++.|||.+-.
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~---------~~V~~----------i~~~d~~----~~~iyf~a~~~~ 303 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD---------WEVTS----------ILGWDED----NNRIYFTANGDN 303 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTSSEEEESS-SS---------S-EEE----------EEEEECT----SSEEEEEESSGG
T ss_pred CCEEEEEEEcCCCcEEEEEcccccceeccccCc---------eeecc----------cceEcCC----CCEEEEEecCCC
Confidence 467888887433 56888888888754444332 22211 1445544 4799997654
Q ss_pred --CcceEeeech
Q psy731 354 --STTEFAVTTK 363 (494)
Q Consensus 354 --s~~ly~V~T~ 363 (494)
-+++|+|+.+
T Consensus 304 p~~r~lY~v~~~ 315 (353)
T PF00930_consen 304 PGERHLYRVSLD 315 (353)
T ss_dssp TTSBEEEEEETT
T ss_pred CCceEEEEEEeC
Confidence 4599999887
No 122
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=55.15 E-value=27 Score=36.62 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=34.7
Q ss_pred CCCEEEEEECCC-CcEEEEEEcCCCccccccCCccceE-EEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEe
Q psy731 154 QPPSVQVYDLRQ-QMQIRFFQLKEKTDYTEESKFSNMV-VDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIH 227 (494)
Q Consensus 154 ~~Pklv~~dl~t-~~vi~~~~lp~~~~~~~~S~l~d~v-VD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~ 227 (494)
..+.|.++|++| +++++.+..+. ....+..+. +|. ..+-.-.+||..|.+ |..|||+
T Consensus 179 ~~~~lyi~d~~t~G~l~~~i~~~~-----~~~gl~~~~~~D~-d~DG~~D~vYaGDl~-----------GnlwR~d 237 (335)
T PF05567_consen 179 GGAALYILDADTTGALIKKIDVPG-----GSGGLSSPAVVDS-DGDGYVDRVYAGDLG-----------GNLWRFD 237 (335)
T ss_dssp --EEEEEEETTT---EEEEEEE-------STT-EEEEEEE-T-TSSSEE-EEEEEETT-----------SEEEEEE
T ss_pred CCcEEEEEECCCCCceEEEEecCC-----CCccccccEEEec-cCCCeEEEEEEEcCC-----------CcEEEEE
Confidence 567999999999 99999998877 344666665 453 222234788988874 6778883
No 123
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=55.04 E-value=2.5e+02 Score=28.73 Aligned_cols=212 Identities=15% Similarity=0.077 Sum_probs=112.6
Q ss_pred eeeeeee-eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeEEE
Q psy731 64 LPVSLDK-WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWA 142 (494)
Q Consensus 64 ~p~gv~v-~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~Lwv 142 (494)
.--|+.+ .+|.+|.+.=... -++|.++..+.+ . --.-.+.|.--. -.++.+ -.++||.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG---~S~l~~~d~~tg----~---~~~~~~l~~~~F----------gEGit~-~~d~l~q 104 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYG---QSSLRKVDLETG----K---VLQSVPLPPRYF----------GEGITI-LGDKLYQ 104 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTT---EEEEEEEETTTS----S---EEEEEE-TTT------------EEEEEE-ETTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCC---cEEEEEEECCCC----c---EEEEEECCcccc----------ceeEEE-ECCEEEE
Confidence 3368998 8999999997753 478898887543 1 012345665322 223333 2679999
Q ss_pred EeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCc
Q psy731 143 LDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTND 222 (494)
Q Consensus 143 lD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~ 222 (494)
|==... +.++||.+|=+.++++..+. ++=.|- .++..+|+||- ...|..+|..+=+
T Consensus 105 LTWk~~--------~~f~yd~~tl~~~~~~~y~~-----EGWGLt----------~dg~~Li~SDG-S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 105 LTWKEG--------TGFVYDPNTLKKIGTFPYPG-----EGWGLT----------SDGKRLIMSDG-SSRLYFLDPETFK 160 (264)
T ss_dssp EESSSS--------EEEEEETTTTEEEEEEE-SS-----S--EEE----------ECSSCEEEE-S-SSEEEEE-TTT-S
T ss_pred EEecCC--------eEEEEccccceEEEEEecCC-----cceEEE----------cCCCEEEEECC-ccceEEECCcccc
Confidence 977766 89999999999999999886 222211 14567777776 3455555543322
Q ss_pred eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEE
Q psy731 223 SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSH 302 (494)
Q Consensus 223 ~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~sw 302 (494)
.-|- .+..+ .-.+-..+|-+. |-++++|--=-..+.|++-|.++|+.-
T Consensus 161 ~~~~-----------------------i~V~~--~g~pv~~LNELE-------~i~G~IyANVW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 161 EVRT-----------------------IQVTD--NGRPVSNLNELE-------YINGKIYANVWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp EEEE-----------------------EE-EE--TTEE---EEEEE-------EETTEEEEEETTSSEEEEEETTT-BEE
T ss_pred eEEE-----------------------EEEEE--CCEECCCcEeEE-------EEcCEEEEEeCCCCeEEEEeCCCCeEE
Confidence 1111 00000 001112233332 345677764444688999999999877
Q ss_pred EEecC-CcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeee
Q psy731 303 IIHHN-YLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVT 361 (494)
Q Consensus 303 rv~~~-~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~ 361 (494)
..-+- ...+.... ......-.+=++|||-.|. ...||..-=.=.++|.|.
T Consensus 209 ~~iDls~L~~~~~~-----~~~~~~~~dVLNGIAyd~~----~~~l~vTGK~Wp~lyeV~ 259 (264)
T PF05096_consen 209 GWIDLSGLRPEVGR-----DKSRQPDDDVLNGIAYDPE----TDRLFVTGKLWPKLYEVK 259 (264)
T ss_dssp EEEE-HHHHHHHTS-----TTST--TTS-EEEEEEETT----TTEEEEEETT-SEEEEEE
T ss_pred EEEEhhHhhhcccc-----cccccccCCeeEeEeEeCC----CCEEEEEeCCCCceEEEE
Confidence 76432 11110000 0000000122799999876 357777543333777774
No 124
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=54.98 E-value=12 Score=23.88 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=13.5
Q ss_pred eEEeeEEEcCCCeEEEE
Q psy731 127 TSVVKVQSDPCDRLWAL 143 (494)
Q Consensus 127 vsV~~i~iD~~~~Lwvl 143 (494)
..|+.|..|++++|||=
T Consensus 5 n~I~~i~~D~~G~lWig 21 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIG 21 (24)
T ss_dssp SCEEEEEE-TTSCEEEE
T ss_pred CeEEEEEEcCCcCEEEE
Confidence 35788999999999984
No 125
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=53.52 E-value=1.2e+02 Score=32.93 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=65.2
Q ss_pred ecceeeeeeccCCCCCceeEEE-eeCCCcceEeeechhhcCCCcCcccccc-ceEEecc-cCCCCCCCeEEeeCCCCeEE
Q psy731 328 QTGIHGMSLSPLTRDNFRVMYF-HPLASTTEFAVTTKVLQNRSLDFSRSNF-DFKVMGS-RGTGSQSGASSLDEETGVIF 404 (494)
Q Consensus 328 ~~Gi~gIaLsp~~~~g~r~LYf-~plss~~ly~V~T~~L~~~~~~~~~~~~-~v~~~G~-~G~~~qs~g~~~D~~~G~ly 404 (494)
..|..+++|+|+-..+ +.+|| .+.....+|...+...-.-+..+..+.. .+..-+- ++..-..+-++++ ..|.||
T Consensus 114 ~~Gll~~al~~~fa~~-~~~~~~~a~~~~~~~~~n~~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~-pDG~Ly 191 (399)
T COG2133 114 QGGLLDIALSPDFAQG-RLVYFGISEPGGGLYVANRVAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFG-PDGKLY 191 (399)
T ss_pred CCCccceEeccccccc-ceeeeEEEeecCCceEEEEEEEEEcCCCccccccccEEeecCCCCCCcCcccEEEC-CCCcEE
Confidence 3678889999875544 55555 4444446666655443222211111211 2222221 2222335668999 688999
Q ss_pred EeccCC-------------CeEEEEeCCCCcccccc--ceeeeeecCCeEecccceEEcCC-ceEEEEec
Q psy731 405 YALLVK-------------SGVGCWNTFRGEEYNEK--SMGLVAEDNATLIYPSDIRVDRT-GVLWVLSN 458 (494)
Q Consensus 405 ~~~~~~-------------~aI~~w~~~~~~~~~~~--~~~~v~~d~~~l~~pd~~~id~~-g~Lwvlsn 458 (494)
++-=+. ..|.+-+..+..+..+. +-++.+.. +.=|.|+.+++. |.||++.|
T Consensus 192 vs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G---~RN~qGl~w~P~tg~Lw~~e~ 258 (399)
T COG2133 192 VTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYG---HRNPQGLAWHPVTGALWTTEH 258 (399)
T ss_pred EEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEec---cCCccceeecCCCCcEEEEec
Confidence 876655 22233333331111111 11233322 334778889886 89999975
No 126
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=53.21 E-value=22 Score=26.04 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=20.2
Q ss_pred CCcEEEEeeCCCCeEEEEEccCCceeE
Q psy731 199 DNAFLYIADSGHNHIVVYNYRTNDSHI 225 (494)
Q Consensus 199 ~~~~vYItDs~~~~iIVyd~~~~~~~r 225 (494)
.+.|+||+|.. .+|.|+|..+.+.=+
T Consensus 10 ~g~yaYva~~~-~Gl~IvDISnPs~P~ 35 (42)
T PF08309_consen 10 SGNYAYVADGN-NGLVIVDISNPSNPV 35 (42)
T ss_pred ECCEEEEEeCC-CCEEEEECCCCCCCE
Confidence 47899999665 779999988776533
No 127
>PRK01029 tolB translocation protein TolB; Provisional
Probab=52.97 E-value=1.1e+02 Score=32.85 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=24.2
Q ss_pred CcEEEEecCC-CCeEEEEEcCCCcEEEEec
Q psy731 278 DAFLYIADSG-HNHIVVYNYRTNDSHIIHH 306 (494)
Q Consensus 278 ~~~~YI~D~~-~~gliVydl~~~~swrv~~ 306 (494)
.+++|++... .+.|.++++.+++..++.+
T Consensus 199 ~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~ 228 (428)
T PRK01029 199 FPYLYVSYKLGVPKIFLGSLENPAGKKILA 228 (428)
T ss_pred eEEEEEEccCCCceEEEEECCCCCceEeec
Confidence 3588999865 4789999999999999875
No 128
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=50.87 E-value=2.8e+02 Score=27.96 Aligned_cols=72 Identities=11% Similarity=0.268 Sum_probs=45.5
Q ss_pred EEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731 128 SVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA 206 (494)
Q Consensus 128 sV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt 206 (494)
.+-++..++ .++||++--. ++.|+.+++ ++++++++.|... .=..++++ .+++...|+
T Consensus 23 e~SGLTy~pd~~tLfaV~d~--------~~~i~els~-~G~vlr~i~l~g~------~D~EgI~y------~g~~~~vl~ 81 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDE--------PGEIYELSL-DGKVLRRIPLDGF------GDYEGITY------LGNGRYVLS 81 (248)
T ss_dssp -EEEEEEETTTTEEEEEETT--------TTEEEEEET-T--EEEEEE-SS-------SSEEEEEE-------STTEEEEE
T ss_pred CccccEEcCCCCeEEEEECC--------CCEEEEEcC-CCCEEEEEeCCCC------CCceeEEE------ECCCEEEEE
Confidence 467778876 5889998544 348999997 5899999998651 11223333 145666677
Q ss_pred eCCCCeEEEEEccC
Q psy731 207 DSGHNHIVVYNYRT 220 (494)
Q Consensus 207 Ds~~~~iIVyd~~~ 220 (494)
+-..+.|+++++.+
T Consensus 82 ~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 82 EERDQRLYIFTIDD 95 (248)
T ss_dssp ETTTTEEEEEEE--
T ss_pred EcCCCcEEEEEEec
Confidence 87778888888733
No 129
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=50.79 E-value=10 Score=34.40 Aligned_cols=24 Identities=29% Similarity=0.359 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCc
Q psy731 6 PRVLLAILVVAILSLTAHFSQSSR 29 (494)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (494)
=|+||+|||+|++||.+.++....
T Consensus 4 cRLLCalLvlaLcCCpsvc~t~~~ 27 (143)
T PF01456_consen 4 CRLLCALLVLALCCCPSVCATASE 27 (143)
T ss_pred HHHHHHHHHHHHHcCcchhccccc
Confidence 389999999999988876665444
No 130
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.18 E-value=3.2e+02 Score=28.55 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=42.4
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe----eCCCCeEEEEEccCCceeEE
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA----DSGHNHIVVYNYRTNDSHII 226 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt----Ds~~~~iIVyd~~~~~~~rv 226 (494)
-+++||..++++.+++.-|+ ...|.---+.. .+..++|.| +++++-|=|||.+ ....|+
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~-----gRHFyGHg~fs-----~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri 91 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPP-----GRHFYGHGVFS-----PDGRLLYTTENDYETGRGVIGVYDAA-RGYRRI 91 (305)
T ss_pred EEEEEEcCCCceeeEEcCCC-----CCEEecCEEEc-----CCCCEEEEeccccCCCcEEEEEEECc-CCcEEE
Confidence 68888999999888776555 33343333332 257789998 7788889999999 566666
No 131
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=48.02 E-value=3.1e+02 Score=27.65 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=68.3
Q ss_pred eeeeeeCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeEEEEeC
Q psy731 66 VSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDS 145 (494)
Q Consensus 66 ~gv~v~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~LwvlD~ 145 (494)
.++++.+.-|.|-++.-...--..|+.+... .|..- ..|+.. |.. .++-...+ -||.|+++|.
T Consensus 126 iD~AvDE~GLWvIYat~~~~g~ivvskld~~------------tL~v~--~tw~T~-~~k-~~~~naFm-vCGvLY~~~s 188 (250)
T PF02191_consen 126 IDFAVDENGLWVIYATEDNNGNIVVSKLDPE------------TLSVE--QTWNTS-YPK-RSAGNAFM-VCGVLYATDS 188 (250)
T ss_pred EEEEEcCCCEEEEEecCCCCCcEEEEeeCcc------------cCceE--EEEEec-cCc-hhhcceee-EeeEEEEEEE
Confidence 4666678888888887643222344444321 23322 233322 221 11111122 4999999999
Q ss_pred CCCCCCCCCCCEEEEEECCCCcEE-EEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccC
Q psy731 146 GVVEGKMEQPPSVQVYDLRQQMQI-RFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRT 220 (494)
Q Consensus 146 G~~~~~~~~~Pklv~~dl~t~~vi-~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~ 220 (494)
..... .---.+||+.+++.. -.+.|+. +-..+. .++. +..+..+|+=|.| -++.|+++-
T Consensus 189 ~~~~~----~~I~yafDt~t~~~~~~~i~f~~-----~~~~~~--~l~Y---NP~dk~LY~wd~G--~~v~Y~v~f 248 (250)
T PF02191_consen 189 YDTRD----TEIFYAFDTYTGKEEDVSIPFPN-----PYGNIS--MLSY---NPRDKKLYAWDNG--YQVTYDVRF 248 (250)
T ss_pred CCCCC----cEEEEEEECCCCceeceeeeecc-----ccCceE--eeeE---CCCCCeEEEEECC--eEEEEEEEe
Confidence 88621 224578899999765 2344444 222222 2454 4578888988874 588888753
No 132
>smart00284 OLF Olfactomedin-like domains.
Probab=47.28 E-value=2.7e+02 Score=28.29 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=64.1
Q ss_pred eeeeeeCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeEEEEeC
Q psy731 66 VSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDS 145 (494)
Q Consensus 66 ~gv~v~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~LwvlD~ 145 (494)
+++++.+.-|.|-++.-...--..|+.+... .|.--=. |+.. |..=.--.... -||.|+++++
T Consensus 131 iDlAvDE~GLWvIYat~~~~g~ivvSkLnp~------------tL~ve~t--W~T~-~~k~sa~naFm--vCGvLY~~~s 193 (255)
T smart00284 131 IDLAVDENGLWVIYATEQNAGKIVISKLNPA------------TLTIENT--WITT-YNKRSASNAFM--ICGILYVTRS 193 (255)
T ss_pred EEEEEcCCceEEEEeccCCCCCEEEEeeCcc------------cceEEEE--EEcC-CCcccccccEE--EeeEEEEEcc
Confidence 4666678888888877433222234444321 2322223 3321 21100011222 4999999997
Q ss_pred CCCCCCCCCCCEEEEEECCCCcEEE-EEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEcc
Q psy731 146 GVVEGKMEQPPSVQVYDLRQQMQIR-FFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYR 219 (494)
Q Consensus 146 G~~~~~~~~~Pklv~~dl~t~~vi~-~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~ 219 (494)
.... ..---.+||+.|++... .+.|+. .-..+ -.+|. +..+..+|+=|-+ -+|.||++
T Consensus 194 ~~~~----~~~I~yayDt~t~~~~~~~i~f~n-----~y~~~--s~l~Y---NP~d~~LY~wdng--~~l~Y~v~ 252 (255)
T smart00284 194 LGSK----GEKVFYAYDTNTGKEGHLDIPFEN-----MYEYI--SMLDY---NPNDRKLYAWNNG--HLVHYDIA 252 (255)
T ss_pred CCCC----CcEEEEEEECCCCccceeeeeecc-----ccccc--eecee---CCCCCeEEEEeCC--eEEEEEEE
Confidence 4431 11145678999987654 245544 22222 22555 4577888888875 47777764
No 133
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=45.72 E-value=47 Score=34.93 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=65.2
Q ss_pred EEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCC---
Q psy731 160 VYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL--- 236 (494)
Q Consensus 160 ~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~--- 236 (494)
++|+++++++- .+-|+..+++. .++.+|++|++.+.++.+|.++|+...+.+-+= .|+
T Consensus 189 vidv~s~evl~----------~GLsmPhSPRW-------hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG--~~rGL~ 249 (335)
T TIGR03032 189 VIDIPSGEVVA----------SGLSMPHSPRW-------YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG--FTRGLA 249 (335)
T ss_pred EEEeCCCCEEE----------cCccCCcCCcE-------eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCC--CCcccc
Confidence 37888887652 23344445554 579999999999999999999999999944221 110
Q ss_pred -CCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcE
Q psy731 237 -FGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDS 301 (494)
Q Consensus 237 -~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~s 301 (494)
.|.+.+-|-| ..++...|.++-+|.+- +....||.|.|+++++.
T Consensus 250 f~G~llvVgmS----------k~R~~~~f~glpl~~~l-----------~~~~CGv~vidl~tG~v 294 (335)
T TIGR03032 250 FAGDFAFVGLS----------KLRESRVFGGLPIEERL-----------DALGCGVAVIDLNSGDV 294 (335)
T ss_pred eeCCEEEEEec----------cccCCCCcCCCchhhhh-----------hhhcccEEEEECCCCCE
Confidence 1334433332 33445556666666541 22247888999998874
No 134
>KOG0268|consensus
Probab=45.34 E-value=67 Score=34.36 Aligned_cols=94 Identities=13% Similarity=0.290 Sum_probs=61.9
Q ss_pred CCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCcc
Q psy731 152 MEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYL 231 (494)
Q Consensus 152 ~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~ 231 (494)
..|+.++.+||...+.-++++....+.+. ....+.-++.|--+=+..++|++||+++++--+
T Consensus 163 aTcGe~i~IWD~~R~~Pv~smswG~Dti~------------svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~------ 224 (433)
T KOG0268|consen 163 ATCGEQIDIWDEQRDNPVSSMSWGADSIS------------SVKFNPVETSILASCASDRSIVLYDLRQASPLK------ 224 (433)
T ss_pred cccCceeeecccccCCccceeecCCCcee------------EEecCCCcchheeeeccCCceEEEecccCCccc------
Confidence 46888999999988888887776652111 112344566676677778999999988876522
Q ss_pred ccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCC-C--CCcEEEEecCCCCeEEEEEcC
Q psy731 232 HFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSAN-C--DDAFLYIADSGHNHIVVYNYR 297 (494)
Q Consensus 232 ~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~-c--~~~~~YI~D~~~~gliVydl~ 297 (494)
.+..+.+.+. | -.+|.|++-..++.|+.||++
T Consensus 225 ----------------------------------KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 225 ----------------------------------KVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred ----------------------------------eeeeeccccceecCccccceeeccccccceehhhh
Confidence 2222222110 1 157888888888888888876
No 135
>KOG0282|consensus
Probab=44.80 E-value=3.9e+02 Score=29.64 Aligned_cols=54 Identities=13% Similarity=0.269 Sum_probs=40.9
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCce
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDS 223 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~ 223 (494)
-|-.||+.||+++.++.+..- +-......++.+++++=.....|+-||+++++.
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~-------------~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKV-------------PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred eeeeeccccceEEEEEecCCC-------------ceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 466789999999999987661 111123335688999999999999999999984
No 136
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=44.79 E-value=83 Score=34.42 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=28.9
Q ss_pred CCcEEEEeeCCCCeEEEEEccCCceeEEecCcc
Q psy731 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYL 231 (494)
Q Consensus 199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~ 231 (494)
++++++|+-..+++..||-...+..-||+.++.
T Consensus 241 ~~t~~wlg~~~~G~~sVy~~~gyq~~RIST~~I 273 (469)
T PF11134_consen 241 GNTVAWLGHDATGAPSVYRINGYQASRISTHAI 273 (469)
T ss_pred CCEEEEeccCCCCCceEEEecCCceeeeccHHH
Confidence 379999999999999999999999999955443
No 137
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=44.73 E-value=1e+02 Score=33.18 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=37.8
Q ss_pred CcEEEEecCC-CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcc
Q psy731 278 DAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTT 356 (494)
Q Consensus 278 ~~~~YI~D~~-~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ 356 (494)
+.++|-+|.. ...|...||+++++-.++...- ++.+|..+||+ ++.|||- -++++
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-------------------~~~~g~~~s~~----~~~~~Yv-~~~~~ 103 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEITQLTDGPG-------------------DNTFGGFLSPD----DRALYYV-KNGRS 103 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEEE---SS--------------------B-TTT-EE-TT----SSEEEEE-ETTTE
T ss_pred CEEEEEeccCCCcceEEEEcccCEEEECccCCC-------------------CCccceEEecC----CCeEEEE-ECCCe
Confidence 4677777754 4679999999999888776320 22456778876 3677662 25678
Q ss_pred eEeeechhhcCC
Q psy731 357 EFAVTTKVLQNR 368 (494)
Q Consensus 357 ly~V~T~~L~~~ 368 (494)
+++|..+-|..+
T Consensus 104 l~~vdL~T~e~~ 115 (386)
T PF14583_consen 104 LRRVDLDTLEER 115 (386)
T ss_dssp EEEEETTT--EE
T ss_pred EEEEECCcCcEE
Confidence 888887777543
No 138
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=44.11 E-value=38 Score=28.67 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=27.3
Q ss_pred ccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCC
Q psy731 262 SKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTN 299 (494)
Q Consensus 262 s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~ 299 (494)
...++|.++. ++.++|+++.....|.||..+++
T Consensus 54 ~~aNGI~~s~-----~~k~lyVa~~~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 54 SFANGIAISP-----DKKYLYVASSLAHSIHVYKRHKD 86 (86)
T ss_pred CCCceEEEcC-----CCCEEEEEeccCCeEEEEEecCC
Confidence 5568899985 46899999999999999987653
No 139
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=41.83 E-value=94 Score=22.30 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=18.6
Q ss_pred cEEEEeeCCCC-eEEEEEccCCceeEE
Q psy731 201 AFLYIADSGHN-HIVVYNYRTNDSHII 226 (494)
Q Consensus 201 ~~vYItDs~~~-~iIVyd~~~~~~~rv 226 (494)
+++|-||.+.. .|-+-++.... +|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~-~~~ 26 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSN-RRT 26 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTS-EEE
T ss_pred CEEEEEECCCCcEEEEEECCCCC-eEE
Confidence 36899999999 67777766665 444
No 140
>KOG0318|consensus
Probab=40.28 E-value=5.9e+02 Score=28.75 Aligned_cols=176 Identities=18% Similarity=0.214 Sum_probs=92.8
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEe-------e-cCCCCCcEEEEeeCCCCeEEEEEccCCceeEEec
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDV-------T-SANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHH 228 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~-------~-~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~ 228 (494)
++.+||......+-..+|+. -...+.|+.=|- . .+..+=++++..|+|.. .=--+|+++||+.
T Consensus 82 ~vRIWdtt~~~hiLKnef~v-----~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S----vGei~GhSr~ins 152 (603)
T KOG0318|consen 82 KVRIWDTTQKEHILKNEFQV-----LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS----VGEITGHSRRINS 152 (603)
T ss_pred cEEEEeccCcceeeeeeeee-----cccccccceeCCCCcEEEEEecCccceeEEEEecCCCc----cceeeccceeEee
Confidence 67777777655444466665 222333433221 1 12223478899999863 0011456666655
Q ss_pred CccccCCCCCccccCCccce-eeeecc---cccccccccc-eeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEE
Q psy731 229 NYLHFDPLFGDFTIGGEYSE-FFQLKE---KTDYTEESKF-SNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHI 303 (494)
Q Consensus 229 ~~~~~dp~~~~f~i~g~~~~-~f~l~~---~~~~~~~s~~-~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swr 303 (494)
-.|.|-++|+--+-.-+..- +|+=+- +...++-+.| +.++.. + ++-.|++=..+..+++||-++++--.
T Consensus 153 ~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys--P----DG~~Fat~gsDgki~iyDGktge~vg 226 (603)
T KOG0318|consen 153 VDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS--P----DGSRFATAGSDGKIYIYDGKTGEKVG 226 (603)
T ss_pred eeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC--C----CCCeEEEecCCccEEEEcCCCccEEE
Confidence 44544444443332222111 222111 0111222222 222221 1 23345665667889999999988655
Q ss_pred EecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhc
Q psy731 304 IHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQ 366 (494)
Q Consensus 304 v~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~ 366 (494)
..... ++ -+.||+.|+-|||. .+.|=-++=-+-+++.|+|.-|-
T Consensus 227 ~l~~~---~a-------------HkGsIfalsWsPDs---~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 227 ELEDS---DA-------------HKGSIFALSWSPDS---TQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred EecCC---CC-------------ccccEEEEEECCCC---ceEEEecCCceEEEEEeeccceE
Confidence 44331 11 24679999999984 56676677777788888876553
No 141
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=39.95 E-value=2.9e+02 Score=29.82 Aligned_cols=36 Identities=14% Similarity=0.365 Sum_probs=24.2
Q ss_pred cceE-EEeecCCCCCcEEEEeeCCCCeEEEEEccCCc
Q psy731 187 SNMV-VDVTSANCDNAFLYIADSGHNHIVVYNYRTND 222 (494)
Q Consensus 187 ~d~v-VD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~ 222 (494)
.|+- +.+-....+.+|+.+|+-+.++..|||.....
T Consensus 257 aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 257 ADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred cCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 4444 33333344689999999999999999988653
No 142
>KOG0310|consensus
Probab=39.11 E-value=4.5e+02 Score=29.15 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=31.5
Q ss_pred EEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC
Q psy731 282 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS 354 (494)
Q Consensus 282 YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss 354 (494)
-++-..+...-|||. ..|++-|..-+|. +|..|+|||+ +++++-.=-++
T Consensus 253 LlS~sLD~~VKVfd~---t~~Kvv~s~~~~~-----------------pvLsiavs~d----d~t~viGmsnG 301 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDT---TNYKVVHSWKYPG-----------------PVLSIAVSPD----DQTVVIGMSNG 301 (487)
T ss_pred EeecccccceEEEEc---cceEEEEeeeccc-----------------ceeeEEecCC----CceEEEecccc
Confidence 344444566778873 3466666655544 4888999996 47888765444
No 143
>KOG0643|consensus
Probab=39.00 E-value=4.7e+02 Score=27.22 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=52.0
Q ss_pred CCCeEEEEeCCCCCCC---CCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCC--
Q psy731 136 PCDRLWALDSGVVEGK---MEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGH-- 210 (494)
Q Consensus 136 ~~~~LwvlD~G~~~~~---~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~-- 210 (494)
-.|-+|-+|....... -..--.+..||.+||+++.+++++.. + . ++|. ..|++..+++||-.-
T Consensus 51 HtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~--V------k--~~~F--~~~gn~~l~~tD~~mg~ 118 (327)
T KOG0643|consen 51 HTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSP--V------K--RVDF--SFGGNLILASTDKQMGY 118 (327)
T ss_pred CCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCe--e------E--EEee--ccCCcEEEEEehhhcCc
Confidence 4566676666554310 01122567789999999988888772 0 0 1333 457889999999743
Q ss_pred -CeEEEEEccCCceeEEec
Q psy731 211 -NHIVVYNYRTNDSHIIHH 228 (494)
Q Consensus 211 -~~iIVyd~~~~~~~rv~~ 228 (494)
..|-|||++...+-..+.
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred ceEEEEEEccCChhhhccc
Confidence 368899999888655543
No 144
>KOG0306|consensus
Probab=37.28 E-value=7.6e+02 Score=29.16 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=58.7
Q ss_pred EEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC
Q psy731 323 VNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG 401 (494)
Q Consensus 323 ~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G 401 (494)
...++.+-+.-++.||+ ++.|-.+=|.++ +.|.+.| +...+.++|.+ .| .-.|-+. -.+
T Consensus 503 rtLel~ddvL~v~~Spd----gk~LaVsLLdnTVkVyflDt------------lKFflsLYGHk--LP-V~smDIS-~DS 562 (888)
T KOG0306|consen 503 RTLELEDDVLCVSVSPD----GKLLAVSLLDNTVKVYFLDT------------LKFFLSLYGHK--LP-VLSMDIS-PDS 562 (888)
T ss_pred eEEeccccEEEEEEcCC----CcEEEEEeccCeEEEEEecc------------eeeeeeecccc--cc-eeEEecc-CCc
Confidence 34567788999999998 488999999888 8888866 23356778887 23 3445555 577
Q ss_pred eEEEeccCCCeEEEEeCCCC
Q psy731 402 VIFYALLVKSGVGCWNTFRG 421 (494)
Q Consensus 402 ~ly~~~~~~~aI~~w~~~~~ 421 (494)
.|..+--....|-.|-.+=|
T Consensus 563 klivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 563 KLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred CeEEeccCCCceEEeccccc
Confidence 88888888888999987643
No 145
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=35.52 E-value=1.4e+02 Score=20.66 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=15.9
Q ss_pred EEEEEECCCCcEEEEEEcCC
Q psy731 157 SVQVYDLRQQMQIRFFQLKE 176 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~ 176 (494)
.|+++|++||+++=+|....
T Consensus 11 ~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 11 YLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEEETTTTSEEEEEESSS
T ss_pred EEEEEECCCCCEEEeeeCCC
Confidence 68888888888887777665
No 146
>KOG2055|consensus
Probab=35.43 E-value=4.7e+02 Score=29.00 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=31.8
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII 226 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv 226 (494)
.|+..-.+|++++.++.++. .+.++..+ .+...+|++-.. +-+.|||+...+.-+.
T Consensus 326 ~I~lLhakT~eli~s~KieG--------~v~~~~fs-----Sdsk~l~~~~~~-GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 326 HIHLLHAKTKELITSFKIEG--------VVSDFTFS-----SDSKELLASGGT-GEVYVWNLRQNSCLHR 381 (514)
T ss_pred eEEeehhhhhhhhheeeecc--------EEeeEEEe-----cCCcEEEEEcCC-ceEEEEecCCcceEEE
Confidence 45555666777777777666 22233332 133455554333 3788888888765333
No 147
>KOG1274|consensus
Probab=34.18 E-value=2.7e+02 Score=33.13 Aligned_cols=133 Identities=23% Similarity=0.311 Sum_probs=0.0
Q ss_pred EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731 129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS 208 (494)
Q Consensus 129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs 208 (494)
|..+..|+.+.+.++-++.. +|.+||+.++.+.++..-=.+
T Consensus 141 Vl~l~~~p~~~fLAvss~dG--------~v~iw~~~~~~~~~tl~~v~k------------------------------- 181 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDG--------KVQIWDLQDGILSKTLTGVDK------------------------------- 181 (933)
T ss_pred eeeeeEcCCCCEEEEEecCc--------eEEEEEcccchhhhhcccCCc-------------------------------
Q ss_pred CCCeEEEEEccCCceeEEecCccccCCCCCccccCC-----------ccceeeeecccccccccccceeeEEeeecCCCC
Q psy731 209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGG-----------EYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD 277 (494)
Q Consensus 209 ~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g-----------~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~ 277 (494)
|.....++....-.+ .|+=|+|.+.+ .+++.|.|..+..... +..+..+. |+
T Consensus 182 --------~n~~~~s~i~~~~aW--~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~---~~~~~wsP----nG 244 (933)
T KOG1274|consen 182 --------DNEFILSRICTRLAW--HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK---FSDLQWSP----NG 244 (933)
T ss_pred --------cccccccceeeeeee--cCCCCeEEeeccCCeEEEEccCCceeheeecccccccc---eEEEEEcC----CC
Q ss_pred CcEEEEecCC-CCeEEEEEcCCCcEEEEecC--CcccCCCCcceEE
Q psy731 278 DAFLYIADSG-HNHIVVYNYRTNDSHIIHHN--YLHFDPLFGDFTI 320 (494)
Q Consensus 278 ~~~~YI~D~~-~~gliVydl~~~~swrv~~~--~~~~dP~~~~~~v 320 (494)
. ||+=.. .+.|+|||.++.....+... -+..-|....+++
T Consensus 245 ~---YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 245 K---YIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred c---EEeeeccCCcEEEEecccchhccccceeEEEecCCCCCeeEE
No 148
>PRK01742 tolB translocation protein TolB; Provisional
Probab=33.81 E-value=6.1e+02 Score=27.01 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=33.1
Q ss_pred CCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC-CCCeEEEEEccCCceeEEe
Q psy731 155 PPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS-GHNHIVVYNYRTNDSHIIH 227 (494)
Q Consensus 155 ~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs-~~~~iIVyd~~~~~~~rv~ 227 (494)
.+.|..+|+.+++....-.++. ....++. ..+++..+|..+. +.-.|.++|+.++...+++
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g--------~~~~~~w----SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRG--------HNGAPAF----SPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCC--------ccCceeE----CCCCCEEEEEEecCCcEEEEEEECCCCCeEeec
Confidence 3567777777765432222222 1112333 1224455565543 3345888999888888874
No 149
>PRK02888 nitrous-oxide reductase; Validated
Probab=33.01 E-value=8.2e+02 Score=28.27 Aligned_cols=147 Identities=10% Similarity=0.080 Sum_probs=75.9
Q ss_pred CCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcc
Q psy731 277 DDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTT 356 (494)
Q Consensus 277 ~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ 356 (494)
+..|+|++.-..+-+=|+|.++.+.| |... -+|+.. |.++ .++-.|=.-.+.+++ | ..|-+=.-...
T Consensus 331 DGkylyVanklS~tVSVIDv~k~k~~-~~~~---~~~~~~---vvae-vevGlGPLHTaFDg~---G--~aytslf~dsq 397 (635)
T PRK02888 331 DGKYFIANGKLSPTVTVIDVRKLDDL-FDGK---IKPRDA---VVAE-PELGLGPLHTAFDGR---G--NAYTTLFLDSQ 397 (635)
T ss_pred CCCEEEEeCCCCCcEEEEEChhhhhh-hhcc---CCccce---EEEe-eccCCCcceEEECCC---C--CEEEeEeecce
Confidence 57999999988999999999987654 1111 122221 1111 111112222444433 2 34432111112
Q ss_pred --eEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeee
Q psy731 357 --EFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAE 434 (494)
Q Consensus 357 --ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~ 434 (494)
-+.+.+++-+=..-....+-.++-.-...|-+..+.|-..+ ..|. |+--+++-+.-|+-+-+ |+.|+|.+++--
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~-~dgk-~l~~~nk~skdrfl~vg--pl~pen~qlidI 473 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKE-ADGK-WLVSLNKFSKDRFLPVG--PLHPENDQLIDI 473 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCC-CCCC-EEEEccccccccccCCC--CCCCCcceeEEc
Confidence 23444422110000000111111111223333345555666 6777 66678888889999999 999999998765
Q ss_pred cCCeEe
Q psy731 435 DNATLI 440 (494)
Q Consensus 435 d~~~l~ 440 (494)
+-+.|.
T Consensus 474 sgdkM~ 479 (635)
T PRK02888 474 SGDKMK 479 (635)
T ss_pred cCCeeE
Confidence 555555
No 150
>KOG0291|consensus
Probab=32.59 E-value=9e+02 Score=28.61 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=29.1
Q ss_pred CCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCc
Q psy731 388 GSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGE 422 (494)
Q Consensus 388 ~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~ 422 (494)
..|-.-++.||+.-.+.-|..+.-.|..|+.++|+
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe
Confidence 36777889996555888899999999999999984
No 151
>KOG2110|consensus
Probab=31.57 E-value=6.9e+02 Score=26.95 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=45.8
Q ss_pred eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731 127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA 206 (494)
Q Consensus 127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt 206 (494)
.++..|+.. ..||.|+=.. +|.+||+++=+++++++--+ +..-.+..+.+. ....--||=.
T Consensus 88 t~IL~VrmN-r~RLvV~Lee----------~IyIydI~~MklLhTI~t~~----~n~~gl~AlS~n----~~n~ylAyp~ 148 (391)
T KOG2110|consen 88 TSILAVRMN-RKRLVVCLEE----------SIYIYDIKDMKLLHTIETTP----PNPKGLCALSPN----NANCYLAYPG 148 (391)
T ss_pred CceEEEEEc-cceEEEEEcc----------cEEEEecccceeehhhhccC----CCccceEeeccC----CCCceEEecC
Confidence 556666664 3466665221 58999999999999887542 011223333331 1111233444
Q ss_pred eCCCCeEEEEEccCCceeE
Q psy731 207 DSGHNHIVVYNYRTNDSHI 225 (494)
Q Consensus 207 Ds~~~~iIVyd~~~~~~~r 225 (494)
+...+.+++||.-+=+..-
T Consensus 149 s~t~GdV~l~d~~nl~~v~ 167 (391)
T KOG2110|consen 149 STTSGDVVLFDTINLQPVN 167 (391)
T ss_pred CCCCceEEEEEcccceeee
Confidence 5556779999987766543
No 152
>KOG0282|consensus
Probab=30.03 E-value=3e+02 Score=30.47 Aligned_cols=56 Identities=13% Similarity=0.246 Sum_probs=33.4
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceE-EEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMV-VDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII 226 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~v-VD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv 226 (494)
||+.||++++++++.|.= .-...+++. +| ++-=+||=+-..+++||+...+.-.+.
T Consensus 323 ki~~wDiRs~kvvqeYd~-------hLg~i~~i~F~~-------~g~rFissSDdks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQEYDR-------HLGAILDITFVD-------EGRRFISSSDDKSVRIWENRIPVPIKN 379 (503)
T ss_pred cEEEEeccchHHHHHHHh-------hhhheeeeEEcc-------CCceEeeeccCccEEEEEcCCCccchh
Confidence 788899999888776641 112334444 22 222344444445899998777766554
No 153
>KOG1446|consensus
Probab=28.29 E-value=7.2e+02 Score=26.11 Aligned_cols=182 Identities=14% Similarity=0.293 Sum_probs=95.1
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCc-eeEEecCccccCC
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTND-SHIIHHNYLHFDP 235 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~-~~rv~~~~~~~dp 235 (494)
-|.-.++.+++.+|.|.=-. -..+++.+ |-..-.+|+=+-...|--||++..+ .-.+.-
T Consensus 81 tIryLsl~dNkylRYF~GH~-------~~V~sL~~------sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------- 140 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHK-------KRVNSLSV------SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------- 140 (311)
T ss_pred ceEEEEeecCceEEEcCCCC-------ceEEEEEe------cCCCCeEEecccCCeEEeeEecCCCCceEEec-------
Confidence 34455888999998664222 22333332 2233678888888889899988333 222210
Q ss_pred CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731 236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF 315 (494)
Q Consensus 236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~ 315 (494)
+...-.+.|. .+.++-+=.+...|-.||++ +|.-.| +
T Consensus 141 --------------------------~~~pi~AfDp------~GLifA~~~~~~~IkLyD~R----------s~dkgP-F 177 (311)
T KOG1446|consen 141 --------------------------SGRPIAAFDP------EGLIFALANGSELIKLYDLR----------SFDKGP-F 177 (311)
T ss_pred --------------------------CCCcceeECC------CCcEEEEecCCCeEEEEEec----------ccCCCC-c
Confidence 0111124443 23344444445578889887 233333 3
Q ss_pred cceEEc-CEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeE
Q psy731 316 GDFTIG-GVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGAS 394 (494)
Q Consensus 316 ~~~~v~-G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~ 394 (494)
..|.+. +..-+| ..|..||+| +.|-.+..+| ..|-+.. . ...+...|+..-..+ .-+.+.
T Consensus 178 ~tf~i~~~~~~ew----~~l~FS~dG----K~iLlsT~~s-~~~~lDA--f------~G~~~~tfs~~~~~~--~~~~~a 238 (311)
T KOG1446|consen 178 TTFSITDNDEAEW----TDLEFSPDG----KSILLSTNAS-FIYLLDA--F------DGTVKSTFSGYPNAG--NLPLSA 238 (311)
T ss_pred eeEccCCCCccce----eeeEEcCCC----CEEEEEeCCC-cEEEEEc--c------CCcEeeeEeeccCCC--CcceeE
Confidence 445554 334444 448888873 5666655555 3333321 0 011122233222121 112333
Q ss_pred EeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731 395 SLDEETGVIFYALLVKSGVGCWNTFRG 421 (494)
Q Consensus 395 ~~D~~~G~ly~~~~~~~aI~~w~~~~~ 421 (494)
.+- .+|.-.++-.....|..|+.++|
T Consensus 239 ~ft-Pds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 239 TFT-PDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred EEC-CCCcEEEEecCCCcEEEEEcCCC
Confidence 444 57777777778888889988775
No 154
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=27.86 E-value=4.9e+02 Score=28.27 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=40.9
Q ss_pred CeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEecC
Q psy731 401 GVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNK 459 (494)
Q Consensus 401 G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsnr 459 (494)
|.+|.+....-.+.+-++++ .+.....+.|..|.. .=|-|+.++.||.|+|+.++
T Consensus 332 ~~lfV~~hgsw~~~~~~~~g--~~~~~~~~fl~~d~~--gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 332 GDLFVGAHGSWPVLRLRPDG--NYKVVLTGFLSGDLG--GRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred CcEEEEeecceeEEEeccCC--CcceEEEEEEecCCC--CcccceEECCCCeEEEeecC
Confidence 78999999888898988888 433333345554322 45789999999999999865
No 155
>KOG0647|consensus
Probab=27.28 E-value=93 Score=32.55 Aligned_cols=81 Identities=26% Similarity=0.370 Sum_probs=48.7
Q ss_pred eEEeeEEEcCCCeEEEEeCCCCC-------CC-----CCCCC----------EEEE-EECCCCcEEEEEEcCCCcccccc
Q psy731 127 TSVVKVQSDPCDRLWALDSGVVE-------GK-----MEQPP----------SVQV-YDLRQQMQIRFFQLKEKTDYTEE 183 (494)
Q Consensus 127 vsV~~i~iD~~~~LwvlD~G~~~-------~~-----~~~~P----------klv~-~dl~t~~vi~~~~lp~~~~~~~~ 183 (494)
..|+.--.|..-+||=|-+|... +. ..+.. |-+. ||++.-+.+.++.||+. ....
T Consensus 85 skVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR--vYa~ 162 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER--VYAA 162 (347)
T ss_pred ceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce--eeeh
Confidence 56666666666677777666543 10 11222 3344 49999999999999992 2222
Q ss_pred CCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCce
Q psy731 184 SKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDS 223 (494)
Q Consensus 184 S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~ 223 (494)
..+..+.| |+ .+.+.|+||+|+.+..
T Consensus 163 Dv~~pm~v-------------Va-ta~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 163 DVLYPMAV-------------VA-TAERHIAVYNLENPPT 188 (347)
T ss_pred hccCceeE-------------EE-ecCCcEEEEEcCCCcc
Confidence 23333332 21 3567899999987654
No 156
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.53 E-value=2.2e+02 Score=19.64 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=14.9
Q ss_pred CCcEEEEeeCCCCeEEEEEccC
Q psy731 199 DNAFLYIADSGHNHIVVYNYRT 220 (494)
Q Consensus 199 ~~~~vYItDs~~~~iIVyd~~~ 220 (494)
.++.+|+.+. .+.|+++|.++
T Consensus 20 ~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-T-TSEEEEEETT-
T ss_pred ECCEEEEEcC-CCEEEEEeCCC
Confidence 4678999988 56788888654
No 157
>KOG0286|consensus
Probab=25.69 E-value=8e+02 Score=25.83 Aligned_cols=52 Identities=19% Similarity=0.435 Sum_probs=36.2
Q ss_pred CCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCc
Q psy731 391 SGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTG 451 (494)
Q Consensus 391 s~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g 451 (494)
..+.++. ..|.|.|+-.....+..||+-+| +.+.+|+--+.|+ +.+.+.+||
T Consensus 276 itSv~FS-~SGRlLfagy~d~~c~vWDtlk~-----e~vg~L~GHeNRv---Scl~~s~DG 327 (343)
T KOG0286|consen 276 ITSVAFS-KSGRLLFAGYDDFTCNVWDTLKG-----ERVGVLAGHENRV---SCLGVSPDG 327 (343)
T ss_pred ceeEEEc-ccccEEEeeecCCceeEeecccc-----ceEEEeeccCCee---EEEEECCCC
Confidence 3456777 89999888899999999999775 3567777544553 344444444
No 158
>KOG0292|consensus
Probab=25.03 E-value=1.3e+03 Score=28.04 Aligned_cols=76 Identities=13% Similarity=0.261 Sum_probs=48.5
Q ss_pred EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceE-EEeecCCCCCcEEEEe
Q psy731 128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMV-VDVTSANCDNAFLYIA 206 (494)
Q Consensus 128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~v-VD~~~~~c~~~~vYIt 206 (494)
.|-++..-...-|+| --|-+ . ||-+|+.++.+.+.+ -..+|.+++ ++. .+.|=+|-
T Consensus 53 pVRgv~FH~~qplFV-SGGDD--y-----kIkVWnYk~rrclft----------L~GHlDYVRt~~F-----HheyPWIl 109 (1202)
T KOG0292|consen 53 PVRGVDFHPTQPLFV-SGGDD--Y-----KIKVWNYKTRRCLFT----------LLGHLDYVRTVFF-----HHEYPWIL 109 (1202)
T ss_pred ccceeeecCCCCeEE-ecCCc--c-----EEEEEecccceehhh----------hccccceeEEeec-----cCCCceEE
Confidence 344444444444544 33333 2 888899999887632 234666776 333 56777775
Q ss_pred eCCC-CeEEEEEccCCceeEE
Q psy731 207 DSGH-NHIVVYNYRTNDSHII 226 (494)
Q Consensus 207 Ds~~-~~iIVyd~~~~~~~rv 226 (494)
-+.. -.|-|||.++.+.--+
T Consensus 110 SASDDQTIrIWNwqsr~~iav 130 (1202)
T KOG0292|consen 110 SASDDQTIRIWNWQSRKCIAV 130 (1202)
T ss_pred EccCCCeEEEEeccCCceEEE
Confidence 5544 4799999999998877
No 159
>KOG0294|consensus
Probab=23.46 E-value=9e+02 Score=25.71 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=47.9
Q ss_pred cceEEecc-cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEE
Q psy731 377 FDFKVMGS-RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWV 455 (494)
Q Consensus 377 ~~v~~~G~-~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwv 455 (494)
...+.++. |+-..|-.++++. .+|.|=++--....+..||-=+|.- .+..-.. ..+.-+++.+.|.=|+
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~----a~v~~L~-----~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRV----AFVLNLK-----NKATLVSWSPQGDHFV 184 (362)
T ss_pred CCeEEeeeecccccccceeEec-CCCceEEEEcCCceeeeehhhcCcc----ceeeccC-----CcceeeEEcCCCCEEE
Confidence 34555554 6656788999998 6999999988999999999754311 1111111 1233367777776444
Q ss_pred Ee--cCchhhh
Q psy731 456 LS--NKLPVFL 464 (494)
Q Consensus 456 ls--nrl~~~~ 464 (494)
+. |++-.|.
T Consensus 185 v~~~~~i~i~q 195 (362)
T KOG0294|consen 185 VSGRNKIDIYQ 195 (362)
T ss_pred EEeccEEEEEe
Confidence 43 5554443
No 160
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=23.12 E-value=3.2e+02 Score=29.40 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=36.9
Q ss_pred EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeec-CCCCCcEEEEeeCCCCeEEEEEccCCceeEE
Q psy731 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTS-ANCDNAFLYIADSGHNHIVVYNYRTNDSHII 226 (494)
Q Consensus 157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~-~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv 226 (494)
+|...|..+.+-++.-.|....+.-+.+. .+.+-... ..|....||++|.... -|||+++|+.-.|
T Consensus 287 ~VfklD~~~~~WveV~sLgd~aLFlG~~~--s~sv~a~e~pG~k~NcIYFtdd~~~--~v~~~~dg~~~~~ 353 (373)
T PLN03215 287 KVYKFDDELAKWMEVKTLGDNAFVMATDT--CFSVLAHEFYGCLPNSIYFTEDTMP--KVFKLDNGNGSSI 353 (373)
T ss_pred EEEEEcCCCCcEEEecccCCeEEEEECCc--cEEEecCCCCCccCCEEEEECCCcc--eEEECCCCCccce
Confidence 44455666666655444544211111110 12222111 3677899999986554 4999999997666
No 161
>KOG0641|consensus
Probab=23.11 E-value=8.1e+02 Score=24.93 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=39.7
Q ss_pred EEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEE-eeCCCcceEee
Q psy731 282 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYF-HPLASTTEFAV 360 (494)
Q Consensus 282 YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf-~plss~~ly~V 360 (494)
+.+-+.+..|--|||+-+.+-+...+.|+-. |.+ ...+-.+++.|.+ |.|-- |+=+|..+|.|
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~---------gle---ssavaav~vdpsg----rll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDG---------GLE---SSAVAAVAVDPSG----RLLASGHADSSCMLYDI 260 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCC---------Ccc---cceeEEEEECCCc----ceeeeccCCCceEEEEe
Confidence 3444455667778888777777766655521 211 1235567887752 45544 77777788888
Q ss_pred ec
Q psy731 361 TT 362 (494)
Q Consensus 361 ~T 362 (494)
..
T Consensus 261 rg 262 (350)
T KOG0641|consen 261 RG 262 (350)
T ss_pred eC
Confidence 65
No 162
>KOG3037|consensus
Probab=22.99 E-value=1.7e+02 Score=30.67 Aligned_cols=56 Identities=25% Similarity=0.560 Sum_probs=41.1
Q ss_pred CCeEEeeCCCCeEEEeccCCCeEE-EEeCCCCccccccceeeeeecCCeEecccceEE---c--CCceEEEE
Q psy731 391 SGASSLDEETGVIFYALLVKSGVG-CWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRV---D--RTGVLWVL 456 (494)
Q Consensus 391 s~g~~~D~~~G~ly~~~~~~~aI~-~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~i---d--~~g~Lwvl 456 (494)
+.-..-||+.|.||...-+..=|- ||..+. . . -+.| +-++||+..-+ + ..|.+||+
T Consensus 26 tk~v~pDprKGli~i~~sddgliHF~WkdR~--~------g-~VEd-DlIifPde~eF~kV~qC~tGRVY~L 87 (330)
T KOG3037|consen 26 TKLVTPDPRKGLIYIKRSDDGLIHFCWKDRE--S------G-NVED-DLIVFPDEAEFKKVDQCKTGRVYVL 87 (330)
T ss_pred cceeecccccceEEEeeCCCceEEEEecccC--C------C-Cccc-ceEEccCceeEEECCCCCCCcEEEE
Confidence 345677889999999988766664 998876 1 1 2344 68899999854 4 37899999
No 163
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=22.93 E-value=9.7e+02 Score=25.78 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=22.7
Q ss_pred CCeEEeeC-CCCeEEEeccCCCeEEEEeCCC
Q psy731 391 SGASSLDE-ETGVIFYALLVKSGVGCWNTFR 420 (494)
Q Consensus 391 s~g~~~D~-~~G~ly~~~~~~~aI~~w~~~~ 420 (494)
.-...+|. .+|-+||++-....|.+.+...
T Consensus 242 n~S~nlD~nGnGyiFFgdnaat~ilR~~vsn 272 (442)
T PF15416_consen 242 NFSLNLDENGNGYIFFGDNAATNILRFTVSN 272 (442)
T ss_pred ceeEEeccCCceEEEecCCccceEEEEEccC
Confidence 34567782 3457999999999999998865
No 164
>KOG3848|consensus
Probab=22.05 E-value=1.7e+02 Score=31.77 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=59.1
Q ss_pred CCEEEEEECCCCc----EEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC----------------------
Q psy731 155 PPSVQVYDLRQQM----QIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS---------------------- 208 (494)
Q Consensus 155 ~Pklv~~dl~t~~----vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs---------------------- 208 (494)
+-|++.+=-++.+ +.-+|+||- =+.+|..|.|. ..+|+|+-|-
T Consensus 133 ~vkih~iLSnshRrA~~v~LsFdFPF-----YGHflrnITiA------TGGFiytGd~vH~wLaATQYIAPLMANFdts~ 201 (516)
T KOG3848|consen 133 PVKIHPILSNSHRRAVRVRLSFDFPF-----YGHFLRNITIA------TGGFIYTGDVVHRWLAATQYIAPLMANFDTSY 201 (516)
T ss_pred ccceechhhhhhhhhheEEEEecCcc-----cCceeeeeEEe------ecceEEehHHHHHHHHHHHHHhHHhhcCCccc
Confidence 3467777666654 566788888 68899999997 4899999875
Q ss_pred CCCeEEEEEccCCceeEE--ecCccccCCCCCcccc
Q psy731 209 GHNHIVVYNYRTNDSHII--HHNYLHFDPLFGDFTI 242 (494)
Q Consensus 209 ~~~~iIVyd~~~~~~~rv--~~~~~~~dp~~~~f~i 242 (494)
.+++-||| .++|.+.-+ +|-+++-++++|.||.
T Consensus 202 snnS~V~y-~DnGtafvvqWdnV~Lqd~~d~gsFTF 236 (516)
T KOG3848|consen 202 SNNSTVVY-FDNGTAFVVQWDNVQLQDDKDEGSFTF 236 (516)
T ss_pred cCCceEEE-ecCCeEEEEEeeeEEeccCCCCCcEEE
Confidence 23466666 567888887 9999999999999987
No 165
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=21.41 E-value=2.3e+02 Score=31.11 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=49.3
Q ss_pred CCeEEEecc-CCCeEEEEeCCCCccccccceeeeeecCCeEeccc---------ceEEcCCceEEEEecCchhhhcCCCC
Q psy731 400 TGVIFYALL-VKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPS---------DIRVDRTGVLWVLSNKLPVFLYSKLK 469 (494)
Q Consensus 400 ~G~ly~~~~-~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd---------~~~id~~g~Lwvlsnrl~~~~~~~~~ 469 (494)
.|-|+-+.- ..--|..++-.. .+++-|.+| +|+.++. ++..+.+|.|||.|+.....+.+...
T Consensus 232 ~~~~~~T~ypD~a~VAVy~~~~------m~~eKvIkd-dRts~a~Gr~~sqy~~~i~~~enGDvYvfS~s~a~~~~~~~~ 304 (435)
T PF14298_consen 232 KGEIFWTQYPDSAWVAVYSYPN------MKLEKVIKD-DRTSYAGGRYRSQYYNGIWKDENGDVYVFSPSYAKTMSDGKS 304 (435)
T ss_pred cCccccccCCCcEEEEEEeCCC------CcEeeeEec-CCeeeccccccceeeeeeeEeCCCCEEEEcCccccccccccc
Confidence 455555555 334456666222 144566677 5767763 56778999999999887766655555
Q ss_pred CCcccEEEEEEe
Q psy731 470 PEDINVRIFKST 481 (494)
Q Consensus 470 ~~~~nfrI~r~~ 481 (494)
....|--|+|++
T Consensus 305 ~stkPSGilRIk 316 (435)
T PF14298_consen 305 QSTKPSGILRIK 316 (435)
T ss_pred ccCCccEEEEEC
Confidence 667777788775
No 166
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=20.67 E-value=2.2e+02 Score=31.46 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCcEEEEec------------CCcccCCCCcceEEcCEEeee-----ecceeeeeeccCCCCC
Q psy731 289 NHIVVYNYRTNDSHIIHH------------NYLHFDPLFGDFTIGGVNFQW-----QTGIHGMSLSPLTRDN 343 (494)
Q Consensus 289 ~gliVydl~~~~swrv~~------------~~~~~dP~~~~~~v~G~~f~~-----~~Gi~gIaLsp~~~~g 343 (494)
-|||-||-..++-|.|.. ++++ +..-++.++|-.|.- .||+.+.-|-..+.++
T Consensus 125 ~GlIAY~~~~~~~WnvG~y~g~~ItN~~~~nt~~--~GHpD~e~N~c~F~~~q~vErD~~~SFhl~~~~~~~ 194 (465)
T PF01690_consen 125 DGLIAYDNSSSDGWNVGNYNGCTITNYKADNTWK--YGHPDLELNGCHFNDGQVVERDGTISFHLEATGDDA 194 (465)
T ss_pred eeeEEecCccccccccccccCcEEecccccCccc--CCCCCceecCcccccCceEEeeeeEEEEEEecCCCc
Confidence 477777777777777742 1222 223356778877753 3566666665444433
No 167
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=20.56 E-value=1.2e+03 Score=25.80 Aligned_cols=94 Identities=7% Similarity=0.100 Sum_probs=52.7
Q ss_pred EeeEEEcCCCeEEEEeCCCCC------CCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcE
Q psy731 129 VVKVQSDPCDRLWALDSGVVE------GKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAF 202 (494)
Q Consensus 129 V~~i~iD~~~~LwvlD~G~~~------~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~ 202 (494)
.+.+..|++|-|+|+-.+... ....-|.-+++++-.+...-+.|-|.-+.++....++.-.-| . .+.|
T Consensus 277 ~~~i~~~enGDvYvfS~s~a~~~~~~~~~stkPSGilRIk~G~teFD~~Yffnle~~sgg~~~~~~~yI---G---~~kF 350 (435)
T PF14298_consen 277 YNGIWKDENGDVYVFSPSYAKTMSDGKSQSTKPSGILRIKKGTTEFDKSYFFNLEAKSGGYKFFRVWYI---G---NNKF 350 (435)
T ss_pred eeeeeEeCCCCEEEEcCcccccccccccccCCccEEEEECCCCcccCcceEeeeecccCCcceEEEEEe---c---CCEE
Confidence 347788999999999776322 123457789998887766655555543223333222111111 0 0000
Q ss_pred --------EEEeeCCCCeEEEEEccCCceeEEec
Q psy731 203 --------LYIADSGHNHIVVYNYRTNDSHIIHH 228 (494)
Q Consensus 203 --------vYItDs~~~~iIVyd~~~~~~~rv~~ 228 (494)
..-+++....+-|+|+.++++..|+.
T Consensus 351 ll~~~~~~~~~~~~~~~~laI~d~~~kt~t~V~g 384 (435)
T PF14298_consen 351 LLQMYDKALTGTYSDAKKLAIFDVSNKTFTWVTG 384 (435)
T ss_pred EEEEecccccccCCccceEEEEEccCceeEEecc
Confidence 01122334568888999999888854
No 168
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=20.18 E-value=2.6e+02 Score=18.04 Aligned_cols=15 Identities=7% Similarity=0.047 Sum_probs=11.1
Q ss_pred EEEEEECCCCcEEEE
Q psy731 157 SVQVYDLRQQMQIRF 171 (494)
Q Consensus 157 klv~~dl~t~~vi~~ 171 (494)
.|+++|..+++++-+
T Consensus 17 ~l~a~d~~~G~~~W~ 31 (33)
T smart00564 17 TLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEEcccCcEEEE
Confidence 688888888877644
Done!