RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy731
(494 letters)
>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein. Royal jelly is the
food of queen bee larvae, and is responsible for the
high reproductive ability of the queen. Major royal
jelly proteins make up around 90% of larval jelly
proteins. This family also the sequence-related yellow
protein of drosophila which controls pigmentation of the
adult cuticle and larval mouth parts.
Length = 285
Score = 229 bits (586), Expect = 6e-72
Identities = 99/239 (41%), Positives = 148/239 (61%), Gaps = 7/239 (2%)
Query: 254 EKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDP 313
S+ N+VVDV CDD F+YIAD+ ++VY+ + S + HN + DP
Sbjct: 53 PADVAKGNSRLVNLVVDVGDDTCDDTFVYIADAKGRGLIVYDLADDKSWRVEHNTFYPDP 112
Query: 314 LFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFS 373
FG FTI G +FQ GI G++LSP T D R +YFHPLAST ++V T+VL+N + +
Sbjct: 113 DFGKFTIAGESFQLDDGIFGLALSPRTPDG-RTLYFHPLASTRLYSVPTEVLRNETNWGN 171
Query: 374 RSNF-DFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLV 432
+ + DFK +G R T QS A ++D GV+F+ L+ ++ VGCWNT Y+ ++G+V
Sbjct: 172 NAQYEDFKDLGDRNT--QSTALAVD-PNGVLFFGLVGQNAVGCWNTST--PYSRANLGVV 226
Query: 433 AEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVC 491
A ++ TL +PSD+++D+ LWVLSN++ FLY+ L +++N RI + V I+ TVC
Sbjct: 227 ARNSDTLQFPSDLKIDKEEYLWVLSNRMQKFLYNDLDYDEVNFRILGANVDLLIRNTVC 285
Score = 113 bits (286), Expect = 2e-28
Identities = 51/132 (38%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 127 TSVVKVQSDPCDRLWALDSGVVE----GKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTE 182
SV ++ D CDRLW LDSG+V K PP + V+DL ++ F+L
Sbjct: 1 VSVYRIAVDECDRLWVLDSGIVNTLQPPKQICPPKLLVFDLATDKLLKRFEL-PADVAKG 59
Query: 183 ESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTI 242
S+ N+VVDV CD+ F+YIAD+ ++VY+ + S + HN + DP FG FTI
Sbjct: 60 NSRLVNLVVDVGDDTCDDTFVYIADAKGRGLIVYDLADDKSWRVEHNTFYPDPDFGKFTI 119
Query: 243 GGEYSEFFQLKE 254
GE FQL +
Sbjct: 120 AGES---FQLDD 128
>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis.Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 197
Score = 33.3 bits (77), Expect = 0.16
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 28/94 (29%)
Query: 237 FGDFTI---GGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANC-DDAFLYIADSGHNHI- 291
GD T+ G+Y++F LK + V C DD H+++
Sbjct: 39 VGDNTLLGASGDYADFQYLKR----LLDQL-------VIDDECLDDGHSLSPKEIHSYLT 87
Query: 292 -VVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVN 324
V+YN R+ +PL+ +GGV+
Sbjct: 88 RVLYNRRSK-----------MNPLWNTLVVGGVD 110
>gnl|CDD|220674 pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This
entry contains bacterial 6-phosphogluconolactonases
(6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse
6-phosphogluconolactone to 6-phosphogluconate. The entry
also contains the fungal muconate lactonising enzyme
carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and
muconate cycloisomerase (EC:5.5.1.1), which convert
cis,cis-muconates to muconolactones and vice versa as
part of the microbial beta-ketoadipate pathway.
Structures of proteins in this family have revealed a
7-bladed beta-propeller fold.
Length = 344
Score = 31.0 bits (71), Expect = 1.4
Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 23/119 (19%)
Query: 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGD----FTIGGEY-------- 246
D FL + D G + + VY + + P G F G+Y
Sbjct: 153 DGKFLVVPDLGTDRVRVYRLDDAGGKLTEPASVKTPPGSGPRHLVFHPDGKYAYVVNELS 212
Query: 247 SEF--FQLKEKT-DYTEESKFSNMVVDVTSAN--------CDDAFLYIADSGHNHIVVY 294
S T +TE S + D T N D FLY+++ GH+ I V+
Sbjct: 213 STVTVLSYDPATGTFTELQTVSTLPEDFTGTNGAAAIRISPDGRFLYVSNRGHDSIAVF 271
>gnl|CDD|217606 pfam03543, Peptidase_C58, Yersinia/Haemophilus virulence surface
antigen.
Length = 203
Score = 28.6 bits (64), Expect = 6.0
Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 31/159 (19%)
Query: 131 KVQSDPCDRLWALDSGVVEGKMEQPPSVQVYD------LRQQMQIRFFQLKEKTDYTEES 184
+ R+ AL G +G +Y L + +FFQ + + +E+
Sbjct: 32 HANASAESRMDALYPGGSKGHARAAERQSLYSIKKLQLLSRGAGAQFFQFQATDTWLQEA 91
Query: 185 KFS--------NMVVDVTSANCDNAFLY-IADSGHNHIVVYNYRTN---DSHII-----H 227
V SA+ + L I D+G +H++ + N H +
Sbjct: 92 GLEPSGEEKGLGSVAGTVSASNVSRLLKAILDTGSDHLLSLKFSINGEGGGHAVAASVDG 151
Query: 228 HNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSN 266
FDP FG+FT F KE + F
Sbjct: 152 GKVTFFDPNFGEFT--------FPSKESFSWFTADFFKK 182
>gnl|CDD|225643 COG3101, COG3101, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 180
Score = 28.3 bits (63), Expect = 6.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 22 AHFSQSSRLTEIFNW--------KQVDFAFPNEEERRLAQTRGQFVAENCLPVSLD 69
AH +S L EI +W + VDF + + R AQT+ QF P +L+
Sbjct: 48 AHGFYASALHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQALE 103
>gnl|CDD|227326 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and
metabolism].
Length = 773
Score = 29.0 bits (65), Expect = 6.8
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 384 SRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTF---RGEEYNEKSMGLVAEDNAT 438
+R + + ++S D + +++ + G +T+ R + S +VA D T
Sbjct: 382 TRNSPNSWASASYDAKLNLVYVPM----GNQTPDTWGGTRTPGDEKYSSSIVALDATT 435
>gnl|CDD|182071 PRK09777, fecD, iron-dicitrate transporter subunit FecD;
Reviewed.
Length = 318
Score = 28.9 bits (65), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 1 MIFLLPRVLLAILVVAILSLTAHFSQS 27
M + LPR+LLA+ V A L+++ Q
Sbjct: 48 MEYRLPRLLLALFVGAALAVSGVLVQG 74
>gnl|CDD|216621 pfam01640, Peptidase_C10, Peptidase C10 family. This family
represents just the active peptide part of these
proteins. Residues 1-120 are not part of the model as
they form the pro-peptide, which before cleavage blocks
the active site from the substrate. The catalytic
residues of histidine and cysteine are brought close
together at the active site by the folding of the active
peptide.
Length = 192
Score = 28.3 bits (64), Expect = 7.2
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 346 VMYFH--PLASTTEFAVTTKVLQNRSLDFSRSNFDFKVM 382
+M +H P + T + S DF + +D+ M
Sbjct: 31 IMRYHKWPKKGVGSVSYTVGGVTILSADFGNTTYDWANM 69
>gnl|CDD|177835 PLN02179, PLN02179, carbonic anhydrase.
Length = 235
Score = 28.4 bits (63), Expect = 7.4
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 321 GGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLD 371
G +N QW+ G SP+ + RV H A + + V+Q+R D
Sbjct: 51 GKLNPQWKVCSTGKYQSPIDLTDERVSLIHDQALSRHYKPAPAVIQSRGHD 101
>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This
family describes a region that is found in proteins
expressed by a variety of eukaryotic and prokaryotic
species. These proteins include various enzymes, such as
senescence marker protein 30 (SMP-30), gluconolactonase
and luciferin-regenerating enzyme (LRE). SMP-30 is known
to hydrolyse diisopropyl phosphorofluoridate in the
liver, and has been noted as having sequence similarity,
in the region described in this family, with PON1 and
LRE.
Length = 245
Score = 28.4 bits (64), Expect = 8.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 199 DNAFLYIADSGHNHIVVYNY 218
D LY ADS I ++Y
Sbjct: 143 DGKTLYFADSPTRRIWAFDY 162
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,925,297
Number of extensions: 2387283
Number of successful extensions: 1871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1867
Number of HSP's successfully gapped: 19
Length of query: 494
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 393
Effective length of database: 6,457,848
Effective search space: 2537934264
Effective search space used: 2537934264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)