RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy731
(494 letters)
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
serotonin, salivary gland, binding, ligand binging
protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
PDB: 3q6p_A* 3q6t_A*
Length = 381
Score = 285 bits (729), Expect = 2e-92
Identities = 101/468 (21%), Positives = 174/468 (37%), Gaps = 98/468 (20%)
Query: 31 TEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLP--VSLDKWHDRLFLAVPRHKNGVPS 88
T+ + WKQ+ + G + +N + + D ++LFLAVPR VP
Sbjct: 3 TQGYKWKQLLYNNVTP---------GSYNPDNMISTAFAYDAEGEKLFLAVPRKLPRVPY 53
Query: 89 TLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVV 148
TL V ++ K SP+L + ++ + LTS+ + D C RLW
Sbjct: 54 TLAEVDT-KNSLGVKGKHSPLLNKFSGHKTG----KELTSIYQPVIDDCRRLW------- 101
Query: 149 EGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS 208
VVD+ S + S
Sbjct: 102 -----------------------------------------VVDIGSVEYRSRGAKDYPS 120
Query: 209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMV 268
IV Y+ + + + Y + + F
Sbjct: 121 HRPAIVAYDLKQPNYPEVVRYYFPTR----------------------LVEKPTYFGGFA 158
Query: 269 VDVT--SANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQ 326
VDV +C + F+YI + + +Y+++ DS + H + F GG ++
Sbjct: 159 VDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAER-PTKFDYGGKEYE 217
Query: 327 WQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRG 386
++ GI G++L + R Y+ ++ ++V TK L+ + + +++G+RG
Sbjct: 218 FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG-----GKLNPELLGNRG 272
Query: 387 TGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIR 446
+ + A + D +T VIF+A V CWNT + V ++ ++ +DI
Sbjct: 273 KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK--MPLRMKNTDVVYTSSRFVFGTDIS 330
Query: 447 VDRTGVLWVLSNKLPVFLYS-KLKPEDINVRIFK-STVRNAIKGTVCD 492
VD G LW +SN P S K K + R+ + + AI GT CD
Sbjct: 331 VDSKGGLWFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQEAIAGTACD 378
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 107 bits (268), Expect = 6e-26
Identities = 48/310 (15%), Positives = 97/310 (31%), Gaps = 66/310 (21%)
Query: 190 VVDVTSANCDNAFLYIADSGHNH-----IVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGG 244
V+ + S +++ D+G+ +V ++ N L T+
Sbjct: 69 VLGIKSDGNGI--VWMLDNGNQSKSVPKLVAWDTLNN-------QLSRVIYLPPPITLSN 119
Query: 245 EYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG---HNHIVVYNYRTNDS 301
+ +++ VD F+YI+D ++ + +T +
Sbjct: 120 SF-----------------VNDLAVD-----LIHNFVYISDPAPDDKAALIRVDLQTGLA 157
Query: 302 HIIHHNYLHFDPLFGDFTIGGVNFQW----------QTGIHGMSLSPLTRDNFRVMYFHP 351
+ Y P D I GV Q G++G+ L +Y P
Sbjct: 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA----ENEWLYLSP 213
Query: 352 LASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKS 411
+ ST+ + + + L N L + + + S+D + I+ L S
Sbjct: 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERYSEK---PICDGISID-KDHNIYVGDLAHS 269
Query: 412 GVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVF--LYSKLK 469
+G + +++ L+ D L + G L+ N+L L +
Sbjct: 270 AIGVITS------ADRAYKLLVTDE-KLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGEN 322
Query: 470 PEDINVRIFK 479
IF+
Sbjct: 323 ISAPPYYIFR 332
Score = 95.6 bits (237), Expect = 8e-22
Identities = 47/336 (13%), Positives = 93/336 (27%), Gaps = 81/336 (24%)
Query: 74 RLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQ 133
RLFL++ + + + T L+P+P N +V+ ++
Sbjct: 29 RLFLSLHQF-YQPEMQVAEL------------TQDGLIPFPPQSGN--AIITFDTVLGIK 73
Query: 134 SDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDV 193
SD +W LD+G P + +D R L S +++ VD
Sbjct: 74 SDGNGIVWMLDNGNQSK---SVPKLVAWDTLNNQLSRVIYLPP-PITLSNSFVNDLAVD- 128
Query: 194 TSANCDNAFLYIADSG---HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGE----- 245
+ F+YI+D ++ + +T + + Y P D I G
Sbjct: 129 ----LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG 184
Query: 246 --------------------------YSEFFQLKE---KTDY-----TEESKFSNMVVDV 271
S K+ +++ + +
Sbjct: 185 QPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY 244
Query: 272 TSANCDDAF-------LYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGG-- 322
+ D +Y+ D H+ I V ++ + F G
Sbjct: 245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWT--DSFNFGSDG 302
Query: 323 ----VNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS 354
Q + ++ + + PLA+
Sbjct: 303 YLYFDCNQLHHSAPLNAGENISAPPYYIFRLKPLAA 338
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 3e-06
Identities = 52/329 (15%), Positives = 98/329 (29%), Gaps = 105/329 (31%)
Query: 5 LPRVLLAI--LVVAILSLTAHFSQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAEN 62
LPR +L ++I++ S L NWK V+ +L + N
Sbjct: 318 LPREVLTTNPRRLSIIAE----SIRDGLATWDNWKHVNCD-------KLTTIIESSL--N 364
Query: 63 CLPVSLDKWHDRLF--LAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNV 120
L + + ++F L+V P S + I + +L W +
Sbjct: 365 VLEPAEYR---KMFDRLSV---------------FPPSAH----IPTILLSLI--WFDVI 400
Query: 121 REARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDY 180
+ V V + + ++ K + ++ + + + +LK K +
Sbjct: 401 KS------DVMVVVNKLHKYSLVE------KQPKESTISIPSI-------YLELKVKLE- 440
Query: 181 TEESKFSNMVVD---VTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHH--------N 229
E +VD + + + Y Y SHI HH
Sbjct: 441 -NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ------YFY----SHIGHHLKNIEHPER 489
Query: 230 YLHFDPLFGDFTIGGEYSEFFQLK---EKTDYTEESKFSNMVVDVTSANCDDAFL-YIAD 285
F +F DF F + K + T + N + + + YI D
Sbjct: 490 MTLFRMVFLDF-------RFLEQKIRHDSTAWNASGSILNTLQQL------KFYKPYICD 536
Query: 286 S-GHNHIVVYNYRTN----DSHIIHHNYL 309
+ +V + ++I Y
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYT 565
Score = 44.1 bits (103), Expect = 1e-04
Identities = 55/408 (13%), Positives = 109/408 (26%), Gaps = 127/408 (31%)
Query: 30 LTEIFNWKQVDFAF--PNEEER--------RLAQTRG--QFVAENCLPVSLDKWHDRLFL 77
I + +++D + Q +FV E L + FL
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-----VLRI--NYKFL 94
Query: 78 AVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYP-----------SWESNVREARNL 126
P ++ M ++ + + + Y +R A+N+
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 127 T---------SVV--------KVQSDPCDRL-WALDSGVV---EGKMEQ---------PP 156
+ V KVQ ++ W L+ E +E P
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 157 SVQVYDLRQQMQIRFFQLKEK-TDYTEESKFSNMVV---DVTSANCDNAFLYIADSGHNH 212
D +++R ++ + + + N ++ +V +A NAF +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLSCK 267
Query: 213 IVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEE------SKFSN 266
I++ T + DF + T + K+ +
Sbjct: 268 ILL---TTRFKQVT------------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 267 MVV-DVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNF 325
D+ ++ I+ + R + N+ H VN
Sbjct: 313 CRPQDLPREVLTTNPRRLS------IIAESIRDGLATW--DNWKH------------VNC 352
Query: 326 QWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAV-------TTKVLQ 366
T I SL+ L +R M+ +V T +L
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMF-------DRLSVFPPSAHIPTILLS 393
Score = 35.6 bits (81), Expect = 0.038
Identities = 34/253 (13%), Positives = 63/253 (24%), Gaps = 90/253 (35%)
Query: 227 HHNYLHFDPLFGDFTIGG-EYS-----EFFQ--LKEKTDYTEESKFSNMVVDVTSANCDD 278
HH++ H DF G +Y F+ + D + + ++ D
Sbjct: 1 HHHHHHM-----DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEID- 52
Query: 279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL-------FGDFTIGGV---NFQWQ 328
HI+ + F L F + V N+++
Sbjct: 53 -----------HII------MSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFL 94
Query: 329 TGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRG-- 386
+ P T + L N + F++ N V SR
Sbjct: 95 M------------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----V--SRLQP 136
Query: 387 -TGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDI 445
+ L V+ +L G G K+ + +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVL---GSG------------KTW-VALD---VC---LSY 174
Query: 446 RVDRT---GVLWV 455
+V + W+
Sbjct: 175 KVQCKMDFKIFWL 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-05
Identities = 75/441 (17%), Positives = 135/441 (30%), Gaps = 156/441 (35%)
Query: 9 LLAILVVAILSLTAHFSQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSL 68
L+ L+ L F+Q I W + P+++ ++ +P+S
Sbjct: 194 TLSELIRTTLDAEKVFTQG---LNILEWLENPSNTPDKD----------YLL--SIPISC 238
Query: 69 DKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKS----------------ITSPILMP 112
P GV +YV+ +T+ +
Sbjct: 239 -----------P--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 113 YPSWES---NVREA-RNLTSV-VKVQSD-PCDRLWA--LDSGVVEGKMEQPPS--VQVYD 162
SWES +VR+A L + V+ P L L+ + E PS + + +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--EGVPSPMLSISN 343
Query: 163 LRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTND 222
L Q+ Q+++ + T N+ L I + N N
Sbjct: 344 LTQE------QVQDYVNKT------------------NSHL--PAGKQVEISLVNGAKN- 376
Query: 223 SHIIHHNYLHFDPLFGDFTIGGEYSEFFQL-----KEK-TDYTEESK--FSNMVVDVTSA 274
+ G + L K K ++S+ FS + ++
Sbjct: 377 -----------------LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN- 418
Query: 275 NCDDAFLYIADSGHNHI------VVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQ 328
FL +A H+H+ ++ ++ + + P++ T G + +
Sbjct: 419 ----RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYD--TFDGSDLRVL 471
Query: 329 TGIHGMSLSP-LTRDNFRVMYFHPL--ASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSR 385
+G S+S + R P+ +TT+F T + LDF
Sbjct: 472 SG----SISERIVDCIIR----LPVKWETTTQFK-ATHI-----LDF------------- 504
Query: 386 GTGSQSGASSLDEE----TGV 402
G G SG L TGV
Sbjct: 505 GPGGASGLGVLTHRNKDGTGV 525
Score = 41.6 bits (97), Expect = 7e-04
Identities = 73/445 (16%), Positives = 123/445 (27%), Gaps = 170/445 (38%)
Query: 87 PSTLNYVMLPNSNNKNKSITSPILMPYPSW--ESNVREARNLTSVVKVQSDPCDRLWALD 144
P TL++ S+ +L+P S+ S ++E K+ +P + A D
Sbjct: 8 PLTLSH----------GSLEHVLLVPTASFFIASQLQE-----QFNKILPEPTEGFAADD 52
Query: 145 SGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEE--SKFSNMVVDVTSANCDNAF 202
+P + E KF V + + F
Sbjct: 53 ---------EPTTP-----------------------AELVGKFLGYVSSLVEPSKVGQF 80
Query: 203 LYIADSGHNHIVVYNY-RTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEE 261
+ + Y ND H + L + T + E + +Y
Sbjct: 81 DQVLNLCLTEFEN-CYLEGNDIHALAAKLLQEND-----TTLVKTKELIK-----NYITA 129
Query: 262 SKFSNMVVDVTSANCDDAFLYIADSGHNHIVV------------------YN-YRTNDSH 302
+ D S + A G+ +V Y Y
Sbjct: 130 RIMAKRPFDKKS---NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 303 IIH----------HNYLHFDPLFGDFTIGGVNF-QWQTGIHGMSLSPLTRDNFRVMYFH- 350
+I L + +F G+N +W + S +P +D Y
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQ----GLNILEW---LENPSNTP-DKD-----YLLS 233
Query: 351 -----PLASTTEFA---VTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSG-------ASS 395
PL + A VT K+ L F+ + G+ TG G A +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKL-----LGFTPGELRSYLKGA--TGHSQGLVTAVAIAET 286
Query: 396 LDEETGVIFYALLVKS-------GVGCWNTFRG-----------EEYNEKS---M----G 430
E+ F+ + K+ GV C+ + E NE M
Sbjct: 287 DSWES---FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 431 L--------VAEDNATLIYPSDIRV 447
L V + N+ L P+ +V
Sbjct: 344 LTQEQVQDYVNKTNSHL--PAGKQV 366
Score = 31.2 bits (70), Expect = 1.0
Identities = 20/125 (16%), Positives = 29/125 (23%), Gaps = 63/125 (50%)
Query: 2 IFLLPRVLL--------AILVV--AIL------------------SL---TAHFSQSSRL 30
F + LL A+ ++ A SL A S +
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD-- 1775
Query: 31 TEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLFLAVPRHKNGVPSTL 90
E + RG + AVPR + G
Sbjct: 1776 -----------VMSIESLVEVVFYRGMTMQV----------------AVPRDELG---RS 1805
Query: 91 NYVML 95
NY M+
Sbjct: 1806 NYGMI 1810
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan
sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter
heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*
Length = 506
Score = 35.8 bits (81), Expect = 0.031
Identities = 13/146 (8%), Positives = 35/146 (23%), Gaps = 10/146 (6%)
Query: 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDY 258
+ + + ++ H + H + F + G ++ +
Sbjct: 173 FDQVINLNNTARAIKDGSVGGPGMYHRVDHCF------FSNPQKPGNAGGGIRIGYYRND 226
Query: 259 TEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDF 318
+ + D I ++ N N ++ + +F
Sbjct: 227 IGRCLVDSNLFM----RQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNF 282
Query: 319 TIGGVNFQWQTGIHGMSLSPLTRDNF 344
IG G+ + N+
Sbjct: 283 YIGNDQRFGYGGMFVWGSRHVIACNY 308
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 34.0 bits (77), Expect = 0.13
Identities = 29/131 (22%), Positives = 39/131 (29%), Gaps = 13/131 (9%)
Query: 189 MVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH------FDPLFGDFTI 242
M VD N LY AD+G N I V ++ L DP G
Sbjct: 85 MAVDWLGKN-----LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYW 139
Query: 243 GGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDA--FLYIADSGHNHIVVYNYRTND 300
+ + D +E + V D A LY D N I N +
Sbjct: 140 TEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN 199
Query: 301 SHIIHHNYLHF 311
+I + H
Sbjct: 200 REVIADDLPHP 210
Score = 30.9 bits (69), Expect = 1.1
Identities = 14/114 (12%), Positives = 26/114 (22%), Gaps = 29/114 (25%)
Query: 197 NCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKT 256
+ + LY DS N I + G +
Sbjct: 348 DPLDKQLYWIDSRQNMI----RKAQ--------------------EDGSQGFTVVVSSVP 383
Query: 257 DYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH 310
E + ++ +D+ S +Y N I V ++
Sbjct: 384 SQNLEIQPYDLSIDIYSRY-----IYWTCEATNVINVTRLDGRSVGVVLKGEQD 432
Score = 30.2 bits (67), Expect = 1.9
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 15/132 (11%)
Query: 189 MVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH------FDPLFGD--F 240
+ +D+ S +Y N I V ++ +P G F
Sbjct: 394 LSIDIYSRY-----IYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYF 448
Query: 241 TIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDA--FLYIADSGHNHIVVYNYRT 298
T E S + E F + + + D L+ ADS I +
Sbjct: 449 TNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 508
Query: 299 NDSHIIHHNYLH 310
+ ++ + +
Sbjct: 509 ANRIVLEDSNIL 520
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 33.3 bits (75), Expect = 0.18
Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 40/144 (27%)
Query: 189 MVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH------FDPLFGDFTI 242
+ VD + N LY D+G + I V I+ L DP+ G
Sbjct: 397 IAVDWVARN-----LYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYW 451
Query: 243 GGEYSEFFQLKEKTDYTEESKF-------SNMVVDVTSA---------NCDDAFLYIADS 286
TD+ E K S+ VV V ++ + D+ +Y D+
Sbjct: 452 -------------TDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDA 498
Query: 287 GHNHIVVYNYRTNDSHIIHHNYLH 310
+ I V N ++ + +
Sbjct: 499 KTDKIEVMNTDGTGRRVLVEDKIP 522
Score = 30.2 bits (67), Expect = 1.7
Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 195 SANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNY-----LHFDPLFGD--FTIGGEYS 247
+ L A+ +V ++ I+ + F G ++ E +
Sbjct: 4 HHHHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA 63
Query: 248 EFFQLKEKTDYTEESKFSN------MVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDS 301
KT+ + S + D LY DS N I V N +
Sbjct: 64 IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK-----LYWTDSETNRIEVSNLDGSLR 118
Query: 302 HIIHHNYLH 310
++ L
Sbjct: 119 KVLFWQELD 127
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 32.4 bits (73), Expect = 0.31
Identities = 24/136 (17%), Positives = 35/136 (25%), Gaps = 24/136 (17%)
Query: 189 MVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH------FDPLFGDFTI 242
+ D LY DS N I V N + ++ L DP G
Sbjct: 84 LACDWLGEK-----LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW 138
Query: 243 GGEYSEFFQLKEKTDYTEESKFSN--------MVVDVTSANCDDAFLYIADSGHNHIVVY 294
+ D + N + +D LY AD+ N I
Sbjct: 139 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK-----LYWADAKLNFIHKS 193
Query: 295 NYRTNDSHIIHHNYLH 310
N + + L
Sbjct: 194 NLDGTNRQAVVKGSLP 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 31.6 bits (72), Expect = 0.51
Identities = 13/129 (10%), Positives = 34/129 (26%), Gaps = 29/129 (22%)
Query: 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNY----------LHFDP----LFGDFTIGG 244
D L++AD ++V I + FD
Sbjct: 81 DANQLFVAD-MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEV 139
Query: 245 EYSEFFQLKEKTD-----YTEESKFSNMVVDVTSAN---------CDDAFLYIADSGHNH 290
+++ + ++ +T + + + N L +A++
Sbjct: 140 APADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK 199
Query: 291 IVVYNYRTN 299
+ Y+ +
Sbjct: 200 LWSYDIKGP 208
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 31.7 bits (72), Expect = 0.55
Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 27/168 (16%)
Query: 158 VQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYN 217
V D + + ++++ F DV ++++D N +V
Sbjct: 114 VFKLDPHSKEGPLLILGRSMQPGSDQNHF-CQPTDVA-VEPSTGAVFVSDGYCNSRIV-- 169
Query: 218 YRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD 277
F P G++ + + +F ++ +
Sbjct: 170 --------------QFSP-------SGKFVTQWGEESSGSSPRPGQF-SVPHSLALVPHL 207
Query: 278 DAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNF 325
D L +AD + I + T + + +F I G F
Sbjct: 208 D-QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLF 254
Score = 28.2 bits (63), Expect = 5.7
Identities = 10/95 (10%), Positives = 23/95 (24%), Gaps = 26/95 (27%)
Query: 202 FLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEE 261
++ D + + + + PL S+
Sbjct: 103 NYWVTDVALHQVFKLDPHSK-----------EGPLLILGRSMQPGSDQNHF--------- 142
Query: 262 SKFSNMVVDVTSANCDDAFLYIADSGHNH-IVVYN 295
DV ++++D N IV ++
Sbjct: 143 ----CQPTDVA-VEPSTGAVFVSDGYCNSRIVQFS 172
Score = 27.9 bits (62), Expect = 9.0
Identities = 17/140 (12%), Positives = 42/140 (30%), Gaps = 27/140 (19%)
Query: 172 FQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSH------- 224
F ++E+ D+ V V + +N L I G + ++ + +
Sbjct: 8 FHVEEELDWPGVYLLPGQVSGVALDSKNN--LVIFHRGDHVWDGNSFDSKFVYQQRGLGP 65
Query: 225 IIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA 284
I L DP + + F+ + +D D ++
Sbjct: 66 IEEDTILVIDPNNAEILQSSGKNLFYLP------------HGLSID------TDGNYWVT 107
Query: 285 DSGHNHIVVYNYRTNDSHII 304
D + + + + + ++
Sbjct: 108 DVALHQVFKLDPHSKEGPLL 127
Score = 27.9 bits (62), Expect = 9.0
Identities = 11/96 (11%), Positives = 21/96 (21%), Gaps = 28/96 (29%)
Query: 203 LYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEES 262
L +AD + I + T + + F +
Sbjct: 210 LCVADRENGRIQCFKTDTKE-------------FVREIKHASFGRNVFAISYIPG----- 251
Query: 263 KFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRT 298
+ V + Y D V N+ +
Sbjct: 252 ----FLFAV------NGKPYFGDQEPVQGFVMNFSS 277
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 31.6 bits (72), Expect = 0.56
Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 26/121 (21%)
Query: 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGD------FTIGGEY----SE 248
DN L++ + I ++ ++D H++ + + G F +Y +E
Sbjct: 139 DNRTLWVPALKQDRICLFTV-SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 197
Query: 249 F------FQLKEKT-DYTEESKFSNMVVDVTSAN--------CDDAFLYIADSGHNHIVV 293
++LK+ + M + + D LY D + I V
Sbjct: 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257
Query: 294 Y 294
+
Sbjct: 258 F 258
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 31.3 bits (71), Expect = 0.61
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 28/97 (28%)
Query: 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDY 258
D L++ ++ N + + I G
Sbjct: 192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS-------------- 237
Query: 259 TEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYN 295
+D D LY+A G ++V+N
Sbjct: 238 --------CCIDS------DDNLYVAMYGQGRVLVFN 260
Score = 30.5 bits (69), Expect = 1.1
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 277 DDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGD 317
D+ L++ ++ N + + I G
Sbjct: 192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH 232
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 31.2 bits (70), Expect = 0.73
Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 8/97 (8%)
Query: 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDY 258
+ YI ++I+ +Y + + D+ G
Sbjct: 280 SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH--APRQG 337
Query: 259 TEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYN 295
T + D+ Y D ++ I +
Sbjct: 338 TFVKNPAYKGSS------DEYDFYFCDRENHCIRILT 368
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 30.3 bits (67), Expect = 1.8
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 225 IIHHNYLHFDPLFGDFTIGGEYS-EFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYI 283
+ + FG F + E L T E K + + + + A A LY
Sbjct: 427 VRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYT 486
Query: 284 ADSGHNHIVVYNYRTNDSHIIHHNYLHFDP 313
+ +G + ++N N + Y + +
Sbjct: 487 SCAGQRRLRIHNLALNCCTQLADLYRNCET 516
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 337
Score = 29.9 bits (68), Expect = 1.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 5 LPRVLLAILVVAILSL 20
LPR+L A+ V A L+L
Sbjct: 63 LPRILTALCVGAGLAL 78
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 29.7 bits (66), Expect = 1.9
Identities = 10/144 (6%), Positives = 38/144 (26%), Gaps = 5/144 (3%)
Query: 177 KTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL 236
+ D E+ K N + + N + + Y + + + Y+ + + + + +
Sbjct: 135 RIDGEEKKKIKNH--YLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVV 192
Query: 237 FGDFTI--GGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVY 294
D + + + + + ++ + Y + + V
Sbjct: 193 LDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNVY-GSLIFYQRGGDNPALCVV 251
Query: 295 NYRTNDSHIIHHNYLHFDPLFGDF 318
+ + +
Sbjct: 252 KNDGTGFKELAKGEFCNINVTSQY 275
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 29.4 bits (66), Expect = 2.4
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 290 HIVVYNYRTNDSHIIHHNYL-HFDPLFGDFTIGGVNFQWQTGI 331
+ + Y ++ DS +L +++ + G V + TG
Sbjct: 181 NHINYQFKAYDSSTSVDKFLGYYNNAASKYKGGNVLISFSTGP 223
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether
bond, OXY storage-transport complex; HET: NDG NAG BMA
MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1
Length = 394
Score = 29.5 bits (65), Expect = 2.6
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 9/112 (8%)
Query: 204 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESK 263
+ + ++V + N H H + + D S QL + D ++S
Sbjct: 94 WTTTFANLPVLVTEEKDNSFHHAHIDVANTDT---------TRSPRAQLFDDPDKGDKSF 144
Query: 264 FSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF 315
F + F + GHN I + ++ + +Y +DPLF
Sbjct: 145 FYRQIALALEQTDFCDFEIQFEIGHNAIHSWVGGSSPYGMSTLHYTSYDPLF 196
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 29.4 bits (65), Expect = 2.9
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 19/125 (15%)
Query: 211 NHIVVYN----YRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSN 266
N IV Y TND + I ++ G Y ++ + F+N
Sbjct: 168 NDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGF---DFAN 224
Query: 267 MVVDVTSANCDDAFLYIADSGHNHIVVY----NYRTNDSHIIHHNY----LHFDPLFGDF 318
+ + D ++YIA+ + I VY N+ ++ + + DP+ GD
Sbjct: 225 GIN----ISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL 280
Query: 319 TIGGV 323
+G
Sbjct: 281 WVGCH 285
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer,
seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora
crassa} SCOP: b.69.10.1
Length = 365
Score = 29.5 bits (66), Expect = 3.0
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFG 238
+LY AD N + + + + + DP
Sbjct: 155 TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH 194
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Length = 326
Score = 29.1 bits (66), Expect = 3.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 5 LPRVLLAILVVAILSL 20
LPR L +LV A L++
Sbjct: 57 LPRTLAVLLVGAALAI 72
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
structural genomics, PSI-2, protein structure
initiative; 1.96A {Lactobacillus plantarum}
Length = 347
Score = 28.5 bits (64), Expect = 5.7
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 25/119 (21%)
Query: 199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFG----DFTIGGEY----SEF- 249
DN D G + + VYN ++ + + L + FG F+ G+Y E
Sbjct: 151 DNRLAV-IDLGSDKVYVYNV-SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS 208
Query: 250 -----FQLKEKT-DYTEESKFSNMVVDVTSAN--------CDDAFLYIADSGHNHIVVY 294
+ +T +T+ + D T+ N D FLY+++ G+N + V+
Sbjct: 209 SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 28.1 bits (62), Expect = 7.7
Identities = 12/126 (9%), Positives = 33/126 (26%), Gaps = 23/126 (18%)
Query: 201 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH-----FDPL-----FGDFTIGGEYSEFF 250
A+L+ + + + ++ + N + + + D + S
Sbjct: 2 AYLFFTNR--HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 251 QLKEKTDYTEESKFSN------MVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHII 304
+ + + VD +N +Y DS + V + + +
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-----IYWTDSVLGTVSVADTKGVKRKTL 114
Query: 305 HHNYLH 310
Sbjct: 115 FRENGS 120
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 28.2 bits (63), Expect = 7.9
Identities = 8/63 (12%), Positives = 20/63 (31%)
Query: 236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYN 295
L D + G E F++ E+ + + + S + + + + +Y
Sbjct: 79 LVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYA 138
Query: 296 YRT 298
Sbjct: 139 LDG 141
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 27.9 bits (62), Expect = 8.3
Identities = 16/137 (11%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 189 MVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH------FDPLFGDF-- 240
+ +D ++ DS + I V ++ L DP+ G+
Sbjct: 84 IALDHLGRT-----IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYW 138
Query: 241 -TIGGEYSEFFQLKEKTDYTEESKFSN------MVVDVTSANCDDAFLYIADSGHNHIVV 293
+ + N + D S+ L D+G +
Sbjct: 139 TDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQ-----LCWVDAGTHRAEC 193
Query: 294 YNYRTNDSHIIHHNYLH 310
N + +
Sbjct: 194 LNPAQPGRRKVLEGLQY 210
>1vr0_A Probable 2-phosphosulfolactate phosphatase; 15026306, putative
2-phosphosulfolactate phosphatase, struct genomics; HET:
3SL; 2.49A {Clostridium acetobutylicum} SCOP: c.148.1.1
Length = 247
Score = 27.7 bits (61), Expect = 8.4
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSA 196
S +++ M+I + + + +V+D+ A
Sbjct: 3 SDKIHHHHHHMKIDLIISADDIKEEKVKNKTAVVIDMLRA 42
>2fv4_B Hypothetical 24.6 kDa protein in ILV2-ADE17 intergenic region;
alpha-beta, complex, coiled-coil, structural protein,
protein binding; NMR {Saccharomyces cerevisiae} SCOP:
d.300.1.2
Length = 77
Score = 25.7 bits (56), Expect = 9.0
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 285 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQT 329
D ++ +++ + I L D DF + W+
Sbjct: 37 DLENDQVLINRKNDGNIDI-----LPLDNNLSDFYK--TKYIWER 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,562,558
Number of extensions: 447752
Number of successful extensions: 1203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1159
Number of HSP's successfully gapped: 68
Length of query: 494
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 397
Effective length of database: 3,993,456
Effective search space: 1585402032
Effective search space used: 1585402032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)