RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy731
(494 letters)
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus
[TaxId: 984]}
Length = 481
Score = 31.8 bits (71), Expect = 0.21
Identities = 14/153 (9%), Positives = 36/153 (23%), Gaps = 10/153 (6%)
Query: 192 DVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQ 251
T + + + ++ H + H + F + G +
Sbjct: 141 SFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDHCF------FSNPQKPGNAGGGIR 194
Query: 252 LKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHF 311
+ + + + D I ++ N N ++ +
Sbjct: 195 IGYYRNDIGRCLVDSNLFM----RQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDH 250
Query: 312 DPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNF 344
+F IG G+ + N+
Sbjct: 251 QVAINNFYIGNDQRFGYGGMFVWGSRHVIACNY 283
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 59
Score = 27.0 bits (60), Expect = 0.80
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 285 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQT 329
D ++ +++ + I L D DF + W+
Sbjct: 19 DLENDQVLINRKNDGNIDI-----LPLDNNLSDFYK--TKYIWER 56
Score = 24.3 bits (53), Expect = 7.5
Identities = 4/44 (9%), Positives = 14/44 (31%), Gaps = 14/44 (31%)
Query: 207 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFF 250
D ++ +++ + I+ + S+F+
Sbjct: 19 DLENDQVLINRKNDGNIDILP--------------LDNNLSDFY 48
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 28.8 bits (63), Expect = 1.2
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 34 FNWK---QVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLF 76
F+W+ ++ +E + T + E +P L + +F
Sbjct: 2 FDWQDPLVLEEQL-TTDEILIRDTFRTYCQERLMPRILLANRNEVF 46
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 27.7 bits (60), Expect = 2.5
Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 40 DFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLF 76
DF + ++ + F + P ++ H ++
Sbjct: 2 DFNL-TDIQQDFLKLAHDFGEKKLAPTVTERDHKGIY 37
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12
uptake, BtuC {Escherichia coli [TaxId: 562]}
Length = 324
Score = 27.8 bits (61), Expect = 3.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 5 LPRVLLAILVVAILSLTAHFSQS 27
LPR L +LV A L+++ Q+
Sbjct: 57 LPRTLAVLLVGAALAISGAVMQA 79
>d2cmua1 d.126.1.6 (A:3-332) Putative peptidyl-arginine deiminase
{Helicobacter pylori J99 [TaxId: 85963]}
Length = 330
Score = 27.4 bits (60), Expect = 4.1
Identities = 16/152 (10%), Positives = 38/152 (25%), Gaps = 19/152 (12%)
Query: 108 PILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQM 167
+L+ + ++ E V++ + WA D G + + +
Sbjct: 48 KVLVCVHTNDTIGYEMLKNLPGVEIAKVDTNDTWARDFGAI-----------SIENHGVL 96
Query: 168 QIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGH---NHIVVYNYR--TND 222
+ F + + + + S L + TN
Sbjct: 97 ECLDFGFNGWGLKYPSNLDNQVNFKLKSLGFLKHPLKTMPYVLEGGSIESDGAGSILTNT 156
Query: 223 SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKE 254
++ N +P I + K+
Sbjct: 157 QCLLEKN---RNPHLNQNGIETMLKKELGAKQ 185
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase,
NM domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 27.2 bits (59), Expect = 4.3
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 40 DFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLF 76
F E+++ T +F E +PV+ + +
Sbjct: 3 SFEL-TEQQKEFQATARKFAREEIIPVAAEYDRTGEY 38
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase,
NM domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 26.9 bits (58), Expect = 5.0
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 40 DFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLF 76
DF+ EE+R+L +F E LPV+ +
Sbjct: 2 DFSL-TEEQRQLQALARRFAKEVILPVAQEYDEKEEV 37
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
enzyme {Neurospora crassa [TaxId: 5141]}
Length = 365
Score = 26.3 bits (57), Expect = 8.2
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 270 DVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHII 304
V+ D ++ I D + +Y ++ H +
Sbjct: 313 AVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRV 347
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 26.5 bits (58), Expect = 8.3
Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 32/153 (20%)
Query: 83 KNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWA 142
+ G +T Y L NS K I+ I+ Y + + + + + + +DP ++A
Sbjct: 138 ERGQSATATYTNLQNSYYNGKKISK-IVYKYTVDPKSKFQGQKVW--LGIFTDPTLGVFA 194
Query: 143 LDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAF 202
G++E+ S+ + + + F+ + + F N ++ V S N
Sbjct: 195 SAY---TGQVEKNTSIFI-----KNEFTFYD-----EDGKPINFDNALLSVASLN----- 236
Query: 203 LYIADSGHNHI---VVYN---YRTNDSHIIHHN 229
HN I Y+ + + S I N
Sbjct: 237 -----REHNSIEMAKDYSGKFVKISGSSIGEKN 264
>d3cdda1 b.106.1.1 (A:181-348) Baseplate protein gpP {Shewanella
oneidensis [TaxId: 70863]}
Length = 168
Score = 25.9 bits (57), Expect = 8.9
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 116 WESNVREARNLTSVVKVQSDPCDR---LWALDSGV 147
WE ++ + V + LW +++ V
Sbjct: 89 WERQRSIGKSNMAEYTVTGWRIPQTGKLWNINTLV 123
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A
[TaxId: 5061]}
Length = 359
Score = 26.3 bits (57), Expect = 10.0
Identities = 28/184 (15%), Positives = 48/184 (26%), Gaps = 31/184 (16%)
Query: 225 IIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA 284
I H + +G + + V SA CD
Sbjct: 165 WIDHVTTA-RIGRQHYVLGTSAD---------NRVSLTNNYIDGVSDYSATCDG------ 208
Query: 285 DSGHNHIVVYNYRTNDSHIIHHNYLH----FDPLFGDFTIGGV--NFQWQTGIHGMSLSP 338
+++ +Y D + NY++ P D T+ N+ + H +
Sbjct: 209 ---YHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGE 265
Query: 339 LTRDNFRVMYF----HPLAST--TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSG 392
F L + F V + + + GS GT S+
Sbjct: 266 GGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFGSSGTFSEDS 325
Query: 393 ASSL 396
S L
Sbjct: 326 TSFL 329
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,839,922
Number of extensions: 84795
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 21
Length of query: 494
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,185,626
Effective search space: 480178530
Effective search space used: 480178530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)