Query psy7312
Match_columns 1013
No_of_seqs 518 out of 1715
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 23:35:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2408|consensus 100.0 4E-108 9E-113 984.4 37.2 500 461-1012 37-697 (719)
2 PF03098 An_peroxidase: Animal 100.0 1E-100 2E-105 907.5 18.9 366 610-1007 1-530 (530)
3 PLN02283 alpha-dioxygenase 100.0 5.4E-80 1.2E-84 733.2 25.7 337 606-999 81-601 (633)
4 KOG2408|consensus 100.0 1.5E-57 3.3E-62 547.6 9.9 286 72-430 367-693 (719)
5 PF03098 An_peroxidase: Animal 100.0 4.1E-54 9E-59 510.3 1.8 280 74-429 202-530 (530)
6 PLN02283 alpha-dioxygenase 100.0 3.2E-46 6.9E-51 444.7 13.7 269 78-418 255-593 (633)
7 PF08880 QLQ: QLQ; InterPro: 21.6 50 0.0011 26.2 1.2 23 973-995 1-24 (37)
8 PF10929 DUF2811: Protein of u 14.8 1.3E+02 0.0029 26.2 2.3 17 861-877 19-35 (57)
9 PF02425 GBP_PSP: Paralytic/GB 14.3 61 0.0013 22.9 0.1 16 556-571 5-20 (23)
10 PLN00107 FAD-dependent oxidore 11.9 87 0.0019 35.1 0.5 46 848-898 160-205 (257)
No 1
>KOG2408|consensus
Probab=100.00 E-value=4.2e-108 Score=984.40 Aligned_cols=500 Identities=41% Similarity=0.686 Sum_probs=408.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHH--hhccccCCCChHHHHHHhCCCChHhhHHHHHHHHHHHHHHHHHHhcCCCcccccCCC
Q psy7312 461 AQKSIEASVGLVNDQNYLYLV--LNRIVLNPDTPAARHQEFFPTTNATLQTGEKAQKSIEASVGLVNDFNLTPEQGTFAL 538 (1013)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~s~~l~~~~~~~~~~~~~~l 538 (1013)
+..+.++|...++.+...... .+......-.....+++.++.+....+...+|..+++.+..+++..+.... .. -
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~-~~--~ 113 (719)
T KOG2408|consen 37 VQIIEEEAKQLVKPAVEVSPSSLLRRRTVTIHPDLNELSSRTSDPDGKIRLLIKAVEVREKSLLLLKRPVILSD-NA--T 113 (719)
T ss_pred HHHHHHhhhhhHHHHHHhhhhhhhcccccccCCCHHHHhhhhcccchhhhhhhhhHHHHHhhhhhhhccccccc-cc--c
Confidence 444555566667666333332 221111112234466777777777788899999999999999987653311 10 1
Q ss_pred CccccchhhhhccCCCCcCCCCCcccCCCCCCCCcccccccccccccchhhhhhhhhcCCCCCCcCCCCCcccCCCCCCc
Q psy7312 539 PKFSILNTVLADTCPKITTCVPFKYRTPDGSCNNLENMAWGKAGTLQNKAHLLFQILADTCPKITTCVPFKYRTPDGSCN 618 (1013)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~C~~~~~r~~~g~cnn~~~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~~C~~~kYRt~DGsCN 618 (1013)
...++........++..++|.. +..+..|. ..|...+|||+||+||
T Consensus 114 ~~~d~~~~~~~~~~~~~s~~~~--------------------------------~~~~~~c~--~~~~~~~yRt~dG~CN 159 (719)
T KOG2408|consen 114 NVTDLLPERHLHVNPRASGCVC--------------------------------SQPPPVCL--NDCFHSKYRTIDGTCN 159 (719)
T ss_pred ccccccccccccccccccCccc--------------------------------CCCCCCcc--CcccccCccccccccC
Confidence 1112222222223333333331 11223343 2567789999999999
Q ss_pred cCCCCcccccCCCccccCCCCCCCcccccccccCCCCCCCCHHHHHHHhhcCC-CCCCCchhHHHHHHHHHHHhhcCCCC
Q psy7312 619 NLENMAWGKAGTAYQRILPPKYEDGVNVAKFRSVTGNTLPSARAISTGFAQDF-DVPSENYTLLVMQWGQFLDHDLTHTP 697 (1013)
Q Consensus 619 Nl~~P~wG~a~t~~~Rllpp~Y~DGv~~Pr~~s~~G~~LP~~R~VS~~l~~~~-~~~~~~~T~ml~~wGQfIdHDl~~tp 697 (1013)
|+.+|.||+|+++|.||+||.|+||+++|++++.. .+||+||+||++|+.+. ..++.++|+|+|||||||+|||+++|
T Consensus 160 N~~~P~~Gas~~~~~Rllpp~Yedg~~~p~~~~~~-~~lP~~R~vS~~l~~~~~~~~~~~~~~~~mqwgQFi~HDl~~~~ 238 (719)
T KOG2408|consen 160 NLRNPTLGASNSPFRRLLPPKYEDGFSTPRGWSDG-TPLPSARLVSNKLLSRSFSPPDSKFNHMAMQWGQFIDHDLYFTP 238 (719)
T ss_pred CCCCCCcccccChhhccCCccccccccCccccccC-CCCCchHHhhHhhhccccCCCCcchhHHHHHHHHHhcccccccC
Confidence 99999999999999999999999999999965544 99999999999999988 88999999999999999999999999
Q ss_pred CCCCCCC-CCCcccCCCCCCCCCCCCCCcccccCCCCCCcccCCCCceeeeccCCCCCC----CCCcccccccCcccccc
Q psy7312 698 ISRGQGG-SGISCCRNGKILEPENLHPDCFPINLPRDDHIFSRFGDTCMEFLNPRAGFI----NFGPREQLNQITGYLDG 772 (1013)
Q Consensus 698 ~~~~~~~-~~~~CC~~~~~~~~~~~~p~C~pI~ip~~Dp~~~~~~~~Cm~f~R~~~g~c----~~gpreQiN~~TsflD~ 772 (1013)
.++..++ ..+.||.. +...+|+|+||.+|++||+|...+ .||+|+|+.+ .| .+++|||+|++|||||+
T Consensus 239 ~~~~~~~~~~~~~C~~-----~~~~~p~C~pi~~p~~dp~~~~~~-~C~~f~Rs~~-~~~~~~~~~~reQlNq~T~~lD~ 311 (719)
T KOG2408|consen 239 LSTVQNGELNIRCCNK-----PQLPSPPCFPIKIPPNDPYFPSNQ-RCLPFVRSLP-ACGSGYNLGPREQLNQLTSFLDA 311 (719)
T ss_pred CcccccCCccccccCC-----CcCCCCcccceecCCCCCccCCcc-cceeceecCC-CccccccCChhhhhccccccccc
Confidence 9887765 55677875 345789999999999999997766 9999999876 44 67899999999999999
Q ss_pred cCCCCCCccccccccchhhhhccCC--Ceeeee---ccCCccCCCCCCC---cccccc--ccccccccCCCccchhHHHH
Q psy7312 773 SNIYGSSQDSQDFTLDLDFLRLFKG--GWLRAQ---NVRGKMFLPANSG---ECTDQA--SKASCFSAGDGRVNEQIELA 842 (1013)
Q Consensus 773 S~VYGSs~~~~~~~~~~~~LR~~~~--G~L~~~---~~~g~~~LP~~~~---~c~~~~--~~~~cF~aGD~R~Ne~p~Lt 842 (1013)
|+||||+++.++ +||.|++ |+|+++ ...+..+||...+ .|.... ....||.|||.|+||+|+|+
T Consensus 312 S~IYGss~~~~~------~lR~f~~~~g~l~~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD~R~~~~pgL~ 385 (719)
T KOG2408|consen 312 SVIYGSSDEDAR------KLRLFKDGKGLLRVDTGLFENGRPLLPFSTDPPNSCRSKPPGAPKPCFTAGDERANEQPGLA 385 (719)
T ss_pred hhccCCCHHHHH------HHhcccCcccceeecccccccCcccCCCCCCCCccccccCCCCCCcccccCccccccCcchH
Confidence 999999999999 9999998 788877 3467889999885 687654 45789999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCChHHhHHHHHHHHHHhhhhhhhhhhhhHhhhc-c---C----CCCCc---------
Q psy7312 843 AIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFLPIILGE-Y---L----PQTPK--------- 905 (1013)
Q Consensus 843 alHtlflReHNriA~~L~~~NP~WsDE~LFQeARrIv~A~~QhIty~E~LP~lLG~-~---~----gl~p~--------- 905 (1013)
+|||+|+|||||||.+|+++||||+||+|||||||||+|++|||||+||||.+||. + . ||+|.
T Consensus 386 ~~hti~lREHNRiA~~Lk~~np~W~dE~lfQeaRkI~~A~~q~Ity~e~LP~ilG~~~~~~~g~~~gY~~~~dp~IsneF 465 (719)
T KOG2408|consen 386 ALHTLFLREHNRIATELKALNPHWSDERLFQEARKIVGAQVQHITYNEYLPKLLGAPLKVSLGGYRGYDPNVDPTISNEF 465 (719)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHhhhhHHhhhhhhcCcccccCCccccCcCCCCChhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999995 1 1 67664
Q ss_pred ---------------------------------------------------------------c----ccc---------
Q psy7312 906 ---------------------------------------------------------------K----HFM--------- 909 (1013)
Q Consensus 906 ---------------------------------------------------------------~----~~t--------- 909 (1013)
. +++
T Consensus 466 ataAfRfgHsli~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~ggid~llrGl~~~~~~~~~d~~~~~~i~~~lf~ 545 (719)
T KOG2408|consen 466 ATAAFRFGHSLIPPFFQRLDENFQPIGEVVNLPLHDAFFNPWLILNEGGIDPLLRGLTTQPAKMPDDQLLNGEITERLFV 545 (719)
T ss_pred hHHHHhhhcccCchhhhhhcccCcccccccCchhhhhhcchhhhhhccChhHHHHHHHhchhhcccchhcCHHHHHHHhh
Confidence 0 011
Q ss_pred -------------------------------------------------HHHHHHHHHhhccCCCcccccccccCCCCCC
Q psy7312 910 -------------------------------------------------QHIIARLSRLYESVDDVDLYTAGLAEFPLPD 940 (1013)
Q Consensus 910 -------------------------------------------------~ei~~~L~~lY~~vddIDL~vGgl~E~~~~G 940 (1013)
+++.++|+.+|++|||||||||+++|++++|
T Consensus 546 ~~~~~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~~~~~~kl~~lY~~~ddiDL~vG~~~E~~~~g 625 (719)
T KOG2408|consen 546 KTDEDGELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIEPEIINKLRTLYGTPDDIDLYVGLLLEKPLPG 625 (719)
T ss_pred hcCcccccchhhhhhhccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhhHHHHHHHHHhcCCchhhcccccccccccCCC
Confidence 1233899999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhhcCCccccccCCCCCCCCHHHHHHHHccccchhhhhcCcCcccccc-ccccCCCC
Q psy7312 941 AMLGPTLVCLLGDQFSRLKRGDRFFYEEGGQPSTFTQDQLREIRKTSLARVICDNADNIQVMQP-LAFLKPSI 1012 (1013)
Q Consensus 941 a~vGPTf~CIi~~QF~rlr~GDRFwyEn~~~p~~FT~~QL~eIrk~sLariiCdN~~~i~~iQ~-~~F~~p~~ 1012 (1013)
|+|||||+|||++||+|+|+|||||||| ..|++||++||+||||+|||+|||+|++++..+++ ++|..|+.
T Consensus 626 ~~vGPTl~cii~~Qf~r~r~gDRf~yen-~~~~~Ft~~QL~ei~k~sLariiC~N~~~~~~~~~~~~f~~~~~ 697 (719)
T KOG2408|consen 626 GLVGPTLACIIAEQFLRLRDGDRFWYEN-FNPGVFTPEQLEEIRKVSLARIICDNGTKITKVSRFDVFDFPDA 697 (719)
T ss_pred ceecccHHHHHHHHHHHHhccCceeecC-CCCCccCHHHHHHHHHhhchheeecCCcccccccccCCcccccc
Confidence 9999999999999999999999999999 78999999999999999999999999888888888 99988764
No 2
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=1.1e-100 Score=907.49 Aligned_cols=366 Identities=53% Similarity=0.942 Sum_probs=292.5
Q ss_pred ccCCCCCCccCCCCcccccCCCccccCCCCCCCcccccccccCCCCCCCCHHHHHHHhhcCCC---CCCCchhHHHHHHH
Q psy7312 610 YRTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVNVAKFRSVTGNTLPSARAISTGFAQDFD---VPSENYTLLVMQWG 686 (1013)
Q Consensus 610 YRt~DGsCNNl~~P~wG~a~t~~~Rllpp~Y~DGv~~Pr~~s~~G~~LP~~R~VS~~l~~~~~---~~~~~~T~ml~~wG 686 (1013)
|||+||+|||+.||.||+++|||.|+|||.|+||+++|| .+.+|.+||+||+||+.|+.... ..++.+|+|+|+||
T Consensus 1 yRt~dG~cNN~~~p~~G~~~~~~~Rllp~~Y~dg~~~pr-~~~~g~~lP~pR~is~~l~~~~~~~~~~~~~~t~l~~~~g 79 (530)
T PF03098_consen 1 YRTYDGSCNNLANPSWGAAGTPFRRLLPPAYADGVSEPR-GSSNGSPLPNPREISNALFRRKDGFDPSHSGLTALFMQWG 79 (530)
T ss_dssp S--SSSTTSSSSSTTTT-SSEE-BESS-B--TTSSSBTT-TSBTTBS---HHHHHHHHTB-SSGTTBEEEEEEHHHHHHH
T ss_pred CCCCCCCccCCCcccccCCCCcccccCCccccccccccc-cccCCccCCCHHHHHHHHhhcccccCCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999 48999999999999999998754 34568899999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCcccccCCCCCCcccCCCCceeeeccCCC----C-CCCCCccc
Q psy7312 687 QFLDHDLTHTPISRGQGGSGISCCRNGKILEPENLHPDCFPINLPRDDHIFSRFGDTCMEFLNPRA----G-FINFGPRE 761 (1013)
Q Consensus 687 QfIdHDl~~tp~~~~~~~~~~~CC~~~~~~~~~~~~p~C~pI~ip~~Dp~~~~~~~~Cm~f~R~~~----g-~c~~gpre 761 (1013)
|||+|||++++... . |+. ||+|+||+||++||+|... .+||+|+|+.+ + .|.. +||
T Consensus 80 Qfi~HDi~~~~~~~-~------C~~----------~~~c~~I~ip~~Dp~~~~~-~~c~~~~Rs~~~~~~~~~~~~-~re 140 (530)
T PF03098_consen 80 QFIDHDITLTPDSS-S------CSD----------HPECFPIPIPPDDPFYRPF-VRCMPFTRSAPAPDPGQSCSL-PRE 140 (530)
T ss_dssp HHHHHHH--BEBTT-T------HHC----------BTTB--EE--TTEHHHHHT-TSEE--B-B-BSSTSSS-SSS-STT
T ss_pred HHHhhhhccccccc-c------ccC----------CCCccccccCCCcccccCC-CCCcccccccccccCCCCCcc-chh
Confidence 99999999998643 1 521 7899999999999999877 99999999643 2 2444 999
Q ss_pred ccccCcccccccCCCCCCccccccccchhhhhc-cCCCeeeee-----ccCCccCCCCCCCccccccccccccccCCCcc
Q psy7312 762 QLNQITGYLDGSNIYGSSQDSQDFTLDLDFLRL-FKGGWLRAQ-----NVRGKMFLPANSGECTDQASKASCFSAGDGRV 835 (1013)
Q Consensus 762 QiN~~TsflD~S~VYGSs~~~~~~~~~~~~LR~-~~~G~L~~~-----~~~g~~~LP~~~~~c~~~~~~~~cF~aGD~R~ 835 (1013)
|+|++|||||+|+||||+++.+. .||+ +++|+|++. ..++.++||... .|... ...||.+||.|+
T Consensus 141 q~N~~T~~lD~S~vYGs~~~~~~------~LR~~~~~G~L~~~~~~~~~~~~~~~lp~~~-~~~~~--~~~~f~~GD~R~ 211 (530)
T PF03098_consen 141 QINQATSYLDLSQVYGSSEEQAR------RLRSSFKGGKLKSDNGEFPPPNGGGLLPSDD-PPTDS--GCRCFLAGDPRV 211 (530)
T ss_dssp BEE-STSSSS-HHHH-SSHHHHH------HTBESSTTTEB--ETSSEEBBTTBES--B-T-SCSSG--HHGSB-TSSTTT
T ss_pred hhccccceeecccccCCCHHHHH------HhhcchhhhhhhcccccccccCCCCCCCCCc-ccccc--cccccccccccc
Confidence 99999999999999999999999 9999 999999973 246778999877 22211 117999999999
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHhcCCCCChHHhHHHHHHHHHHhhhhhhhhhhhhHhhhc-cC--------------
Q psy7312 836 NEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFLPIILGE-YL-------------- 900 (1013)
Q Consensus 836 Ne~p~LtalHtlflReHNriA~~L~~~NP~WsDE~LFQeARrIv~A~~QhIty~E~LP~lLG~-~~-------------- 900 (1013)
||+|+|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|||. .|
T Consensus 212 ne~~~l~~lhtlflReHNria~~L~~~np~w~de~lFqeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~~~~~~~~g~~~ 291 (530)
T PF03098_consen 212 NENPGLTALHTLFLREHNRIADELKKINPHWDDERLFQEARRIVIAQYQHIVYNEYLPALLGPEAMNKFLLPPLNNGYYK 291 (530)
T ss_dssp TSBHHHHHHHHHHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHHS-G----GCGT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhhhhHhhhhhhhcchhhhhhcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999996 32
Q ss_pred CCCCc------------------------------c-------------ccc----------------------------
Q psy7312 901 PQTPK------------------------------K-------------HFM---------------------------- 909 (1013)
Q Consensus 901 gl~p~------------------------------~-------------~~t---------------------------- 909 (1013)
+|++. . |+.
T Consensus 292 ~y~~~~~~~i~~EFa~aA~RfgHs~i~~~~~~~~~~~~~~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~~~a~~~d~ 371 (530)
T PF03098_consen 292 GYDPSVDPSISNEFAAAAYRFGHSMIPDTYDRWDENFEIPEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLASQPAQKVDN 371 (530)
T ss_dssp TS-TTS--S-BTTH-HHHGGGGGGGS-SEEEEBTTTSBETTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHHSEEEHHBT
T ss_pred CCCCCCCCchhHHHHHHHHHhhheeehhhhhhccccCCcccccccccccccCcchhhhhccchHHHHhHHhhCccccccH
Confidence 23322 0 000
Q ss_pred ----------------------------------------------------------------HHHHHHHHHhhccCCC
Q psy7312 910 ----------------------------------------------------------------QHIIARLSRLYESVDD 925 (1013)
Q Consensus 910 ----------------------------------------------------------------~ei~~~L~~lY~~vdd 925 (1013)
+++.++|+++|++|||
T Consensus 372 ~~~~~~~l~~~lf~~~~~~~~~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~~i~~~L~~~Y~~vdd 451 (530)
T PF03098_consen 372 PRFLVDDLRNHLFGPRNVPGSLDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDEISDEEIAAALRALYGHVDD 451 (530)
T ss_dssp TBHSHHHHHTSEESTTSSSEEEHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHHHTSHHHHHHHHHHHSSGGG
T ss_pred HHHhhhHhhcccccccCCcchhHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhhhhHHHHHHHHHHhccchhc
Confidence 0112889999999999
Q ss_pred cccccccccCCCCCCCCChhHHHHHHHHHHHHhhcCCccccccCCCCCCCCHHHHHHHHccccchhhhhcCcCccccccc
Q psy7312 926 VDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEEGGQPSTFTQDQLREIRKTSLARVICDNADNIQVMQPL 1005 (1013)
Q Consensus 926 IDL~vGgl~E~~~~Ga~vGPTf~CIi~~QF~rlr~GDRFwyEn~~~p~~FT~~QL~eIrk~sLariiCdN~~~i~~iQ~~ 1005 (1013)
||||||+|+|++++|+++||||+|||++||.++|+|||||||| +++||++||+||||+|||+|||+|++++++||++
T Consensus 452 vDL~vG~laE~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~yen---~~~ft~~ql~~i~~~tla~iic~n~~~~~~iq~~ 528 (530)
T PF03098_consen 452 VDLWVGGLAEKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYEN---PGSFTPEQLEEIRKTTLARIICDNTDDITRIQPN 528 (530)
T ss_dssp SBHHHHHHHS-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTTS---CTTCTHHHHHHHTTT-HHHHHHHHSTS-SEEESS
T ss_pred ccccceeeeeccccCCCCCHHHHhHHHHHHHHHHhcCcccccC---cCcCCHHHHHHHHHCCHHHHHHhcCCccccCCCC
Confidence 9999999999999999999999999999999999999999996 5999999999999999999999999999999999
Q ss_pred cc
Q psy7312 1006 AF 1007 (1013)
Q Consensus 1006 ~F 1007 (1013)
||
T Consensus 529 ~F 530 (530)
T PF03098_consen 529 AF 530 (530)
T ss_dssp TT
T ss_pred CC
Confidence 99
No 3
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=5.4e-80 Score=733.15 Aligned_cols=337 Identities=25% Similarity=0.367 Sum_probs=279.9
Q ss_pred CCCcccCCCCCCccCCCCcccccCCCccccCCCC-CCCcccccccccCCCCCCCCHHHHHHHhhcCCC-CC-CCchhHHH
Q psy7312 606 VPFKYRTPDGSCNNLENMAWGKAGTAYQRILPPK-YEDGVNVAKFRSVTGNTLPSARAISTGFAQDFD-VP-SENYTLLV 682 (1013)
Q Consensus 606 ~~~kYRt~DGsCNNl~~P~wG~a~t~~~Rllpp~-Y~DGv~~Pr~~s~~G~~LP~~R~VS~~l~~~~~-~~-~~~~T~ml 682 (1013)
...+|||+||+|||+.||.||+|+|+|+|++||. |.||+ .+|+||.||+.++.... .+ ....|+|+
T Consensus 81 ~~~~yRt~DGscNNl~~P~~G~agt~f~R~v~p~~~~~~~-----------~~P~pr~vs~~ll~r~~f~~~~~~~n~~~ 149 (633)
T PLN02283 81 AEYPYRTADGKCNDPFNEGAGSQGTFFGRNMPPVDQKDKL-----------LDPHPSVVATKLLARKKFIDTGKQFNMIA 149 (633)
T ss_pred ccccccCCCCCCcCCCCcccccCCCccccCCCccccCCCC-----------CCCCHHHHHHHHHhhccccCCCCcchHHH
Confidence 3579999999999999999999999999999997 55443 46899999999987543 43 45789999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCcccccCCCCCCcccCCCCceeeeccCCC---CCCCCCc
Q psy7312 683 MQWGQFLDHDLTHTPISRGQGGSGISCCRNGKILEPENLHPDCFPINLPRDDHIFSRFGDTCMEFLNPRA---GFINFGP 759 (1013)
Q Consensus 683 ~~wGQfIdHDl~~tp~~~~~~~~~~~CC~~~~~~~~~~~~p~C~pI~ip~~Dp~~~~~~~~Cm~f~R~~~---g~c~~gp 759 (1013)
|+|||||+|||...... +.|.+|.+|.+. ...-..+||+|+|+.+ +.|. .+
T Consensus 150 ~~w~Qf~~HD~~~~~~~-----------------------~~~~~i~~p~~~--~~~~~~~~~~f~RT~~~~~~~~~-~~ 203 (633)
T PLN02283 150 ASWIQFMIHDWIDHLED-----------------------TQQIELTAPKEV--ASQCPLKSFKFYKTKEVPTGSPD-IK 203 (633)
T ss_pred HHHHHHHHhhhhhhcCc-----------------------cccccccCCccc--ccCCcccccccccCCCCCCCCCC-CC
Confidence 99999999998653211 124455555221 1122458999999643 3444 38
Q ss_pred ccccccCcccccccCCCCCCccccccccchhhhhccCCCeeeeeccCCccCCCCCCCccccccccccccccCCCccchhH
Q psy7312 760 REQLNQITGYLDGSNIYGSSQDSQDFTLDLDFLRLFKGGWLRAQNVRGKMFLPANSGECTDQASKASCFSAGDGRVNEQI 839 (1013)
Q Consensus 760 reQiN~~TsflD~S~VYGSs~~~~~~~~~~~~LR~~~~G~L~~~~~~g~~~LP~~~~~c~~~~~~~~cF~aGD~R~Ne~p 839 (1013)
++|+|++|||||+|+||||++++++ +||+|++|+||++. ..+||... ..||++||.| |++|
T Consensus 204 ~~qiN~~Ts~lD~S~IYGss~~~~~------~LRtf~~GkLk~~~---~~~l~~~~---------~~~~~~Gd~r-n~~p 264 (633)
T PLN02283 204 TGSLNIRTPWWDGSVIYGSNEKGLR------RVRTFKDGKLKISE---DGLLLHDE---------DGIPISGDVR-NSWA 264 (633)
T ss_pred ccccccccceeecccccCCCHHHHH------hhhCCCCCccCcCC---CCCCCCCc---------cCCcccCccc-cccH
Confidence 9999999999999999999999999 99999999999742 24666542 2489999999 8999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCChHHhHHHHHHHHHHhhhhhhhhhhhhHhhhc-cC------------------
Q psy7312 840 ELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFLPIILGE-YL------------------ 900 (1013)
Q Consensus 840 ~LtalHtlflReHNriA~~L~~~NP~WsDE~LFQeARrIv~A~~QhIty~E~LP~lLG~-~~------------------ 900 (1013)
+|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||.|||. .|
T Consensus 265 GL~~lhtLF~REHNrIad~L~~~nP~w~DE~LFQeAR~Iv~A~~q~I~~~EylP~iLg~~~~~~~~~~~w~gllg~~~~~ 344 (633)
T PLN02283 265 GVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTIDWTVELLKTDTLLAGMRANWYGLLGKKFKD 344 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHheeeeeeeccHHhcCCcccccccccccccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999864 21
Q ss_pred --------------CCCCc----------------------------------c------------------c-------
Q psy7312 901 --------------PQTPK----------------------------------K------------------H------- 907 (1013)
Q Consensus 901 --------------gl~p~----------------------------------~------------------~------- 907 (1013)
||++. + +
T Consensus 345 ~~g~~~~~~~~g~~gy~~~~~~~v~~~is~EF~aaYR~Hslip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 424 (633)
T PLN02283 345 TFGHIGGPILSGLVGLKKPNNHGVPYSLTEEFTSVYRMHSLLPDHLILRDITAAPGENKSPPLIEEIPMPELIGLKGEKK 424 (633)
T ss_pred hcccccccccccccCCCccccCCCCcchhHHHHHHHhhhhcCCCceecccccccccccccccccccccHHHHHhhccccc
Confidence 11110 0 0
Q ss_pred ------------c-------------------------------------------------------------------
Q psy7312 908 ------------F------------------------------------------------------------------- 908 (1013)
Q Consensus 908 ------------~------------------------------------------------------------------- 908 (1013)
+
T Consensus 425 l~~~Gl~~ll~~l~~q~aga~~l~n~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sF 504 (633)
T PLN02283 425 LSKIGFEKLMVSMGHQACGALELWNYPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKW 504 (633)
T ss_pred ccccCHHHHHHHHhhcchhccccccCcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCH
Confidence 0
Q ss_pred -----cHHHHHHHHHhhc-cCCCcccccccccCCCCCCCCChhHHHHHHHHHHHHhhcCCccccccCCCCCCCCHHHHHH
Q psy7312 909 -----MQHIIARLSRLYE-SVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEEGGQPSTFTQDQLRE 982 (1013)
Q Consensus 909 -----t~ei~~~L~~lY~-~vddIDL~vGgl~E~~~~Ga~vGPTf~CIi~~QF~rlr~GDRFwyEn~~~p~~FT~~QL~e 982 (1013)
.++++++|+++|+ +||||||||||++|++++|+.+||||.|||..||.|+++||||||||.+ |+.||++||+|
T Consensus 505 edlt~d~e~~~~L~~lY~~~vddVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~n-p~~fT~~gl~~ 583 (633)
T PLN02283 505 EDLTDDEEAIEVLREVYGDDVEKLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNFN-EKTYTKKGLEW 583 (633)
T ss_pred HHcCCCHHHHHHHHHHhCCCHHHHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecCC-cCcCCHHHHHH
Confidence 0112388999998 8999999999999999999999999999999999999999999999874 89999999999
Q ss_pred HHcc-ccchhhhhcCcCc
Q psy7312 983 IRKT-SLARVICDNADNI 999 (1013)
Q Consensus 983 Irk~-sLariiCdN~~~i 999 (1013)
|+++ ||++|||+|...+
T Consensus 584 I~~t~tl~dvl~r~~p~~ 601 (633)
T PLN02283 584 VNTTESLKDVIDRHYPEM 601 (633)
T ss_pred HHccCcHHHHHHHhCcch
Confidence 9997 9999999996544
No 4
>KOG2408|consensus
Probab=100.00 E-value=1.5e-57 Score=547.60 Aligned_cols=286 Identities=29% Similarity=0.459 Sum_probs=248.2
Q ss_pred ccccccccCCCCccccchhHHH--HHHHHHHhhhcccccCCCcccc--cccccccccchhHHHHHHhccC-----CCC--
Q psy7312 72 VTPCATRSGEAGKCTPLVKCIS--FYAELQELQSQPCNLNANERGV--CCPLRSQPGGGGRAYTQKFELS-----PKE-- 140 (1013)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~--f~rEhN~~~~~l~~~~p~w~~~--f~~ar~ip~llG~~~~~~y~L~-----p~~-- 140 (1013)
-.+|-+.|.+|.|-.|+..++- |+|||||||+.||++||+|+++ ||+||||.+...+.++..-.|. +..
T Consensus 367 ~~~cf~aGD~R~~~~pgL~~~hti~lREHNRiA~~Lk~~np~W~dE~lfQeaRkI~~A~~q~Ity~e~LP~ilG~~~~~~ 446 (719)
T KOG2408|consen 367 PKPCFTAGDERANEQPGLAALHTLFLREHNRIATELKALNPHWSDERLFQEARKIVGAQVQHITYNEYLPKLLGAPLKVS 446 (719)
T ss_pred CCcccccCccccccCcchHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHhhhhHHhhhhhhcCcccccC
Confidence 4689999999999999988876 9999999999999999999876 9999999976666555443331 111
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHhhcccccCccccccccCccchhhhhccccCCcchhccccccccccccCCCCCccc
Q psy7312 141 SGYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQK 220 (1013)
Q Consensus 141 ~Gy~~~Ydp~VnpsIsnEFatAAfRfgHSLIp~~l~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~r~~~~~~~~~ 220 (1013)
.||+.+||++|||+|+||||+|||||||||||+.+.+.+.+.. ++..
T Consensus 447 ~g~~~gY~~~~dp~IsneFataAfRfgHsli~~~~~~l~~~~~---------------------------------~~~~ 493 (719)
T KOG2408|consen 447 LGGYRGYDPNVDPTISNEFATAAFRFGHSLIPPFFQRLDENFQ---------------------------------PIGE 493 (719)
T ss_pred CccccCcCCCCChhhhhhhhHHHHhhhcccCchhhhhhcccCc---------------------------------cccc
Confidence 3899999999999999999999999999999999987653211 1000
Q ss_pred cccccccccccccccceeccccccCCCCccCcccccccchhcccCchhhccccChhHHHHHhhcCccccc-CccCcHHHH
Q psy7312 221 ADRFFTREGVKKAIGTYIINSSLYSGYGKFGNIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKA-DRFFTREIT 299 (1013)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~l~L~~~~f~p~~l~~~gg~d~llrG~~~q~a~~~-d~~~~~elt 299 (1013)
..++++++.||+++.+..+||+|+++|||++++++.. |++++.+++
T Consensus 494 ---------------------------------~~~l~~~~~~~~~~~i~~~ggid~llrGl~~~~~~~~~d~~~~~~i~ 540 (719)
T KOG2408|consen 494 ---------------------------------VVNLPLHDAFFNPWLILNEGGIDPLLRGLTTQPAKMPDDQLLNGEIT 540 (719)
T ss_pred ---------------------------------ccCchhhhhhcchhhhhhccChhHHHHHHHhchhhcccchhcCHHHH
Confidence 0147889999999999999999999999999999999 899999999
Q ss_pred HhhhcCCCCCc-cchHHHHHHhhhhcCCCChHHHHHHhCCCCCCChhccccCCCchHHHhhhccccC--Ccchhhhhccc
Q psy7312 300 DRLFQGEGATG-FDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEPFMDTQCCIRSNERNIT--FSKFDEFQADK 376 (1013)
Q Consensus 300 ~~LF~~~~~~g-lDLaAinIQRGRDHGLP~YN~yR~~CgL~~~~sFeDLt~~~~~~~~i~~~L~~ly--~d~VDL~vG~~ 376 (1013)
++||...+..+ +||+|||||||||||||+||+||++|||+++++||||+++++ .+++.+|+.+| |||||||||++
T Consensus 541 ~~lf~~~~~~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~--~~~~~kl~~lY~~~ddiDL~vG~~ 618 (719)
T KOG2408|consen 541 ERLFVKTDEDGELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIE--PEIINKLRTLYGTPDDIDLYVGLL 618 (719)
T ss_pred HHHhhhcCcccccchhhhhhhccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhh--HHHHHHHHHhcCCchhhccccccc
Confidence 99999988777 999999999999999999999999999999999999999997 36778899998 99999999994
Q ss_pred --------------------cccccCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHhh-----hhhhHHHH-HHHH
Q psy7312 377 --------------------SSHNTDSGKSGILRPPPPPNVPIPPLTPQQLNQAAMVAIQRI-----QDRLNLQE-NLVL 430 (1013)
Q Consensus 377 --------------------a~~rl~~gDRF~yen~~~~~v~~~~Ft~eQL~~i~~~SLari-----d~I~~lq~-~vF~ 430 (1013)
+|+|+|+|||||||| .+++.||++||.+|+++||++| ++|..+.+ ++|.
T Consensus 619 ~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen-----~~~~~Ft~~QL~ei~k~sLariiC~N~~~~~~~~~~~~f~ 693 (719)
T KOG2408|consen 619 LEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYEN-----FNPGVFTPEQLEEIRKVSLARIICDNGTKITKVSRFDVFD 693 (719)
T ss_pred ccccCCCceecccHHHHHHHHHHHHhccCceeecC-----CCCCccCHHHHHHHHHhhchheeecCCcccccccccCCcc
Confidence 467999999999999 2339999999999999999999 45777777 8874
No 5
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=4.1e-54 Score=510.31 Aligned_cols=280 Identities=30% Similarity=0.512 Sum_probs=228.9
Q ss_pred ccccccCCCCccccchhHHH--HHHHHHHhhhcccccCCCcccc--cccccccc--------------cchhHHHHHHhc
Q psy7312 74 PCATRSGEAGKCTPLVKCIS--FYAELQELQSQPCNLNANERGV--CCPLRSQP--------------GGGGRAYTQKFE 135 (1013)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~--f~rEhN~~~~~l~~~~p~w~~~--f~~ar~ip--------------~llG~~~~~~y~ 135 (1013)
.|...|..|.|-.|++.++- |+|||||||+.|++.||+|+++ ||+||+|+ .+||++.|..+.
T Consensus 202 ~~f~~GD~R~ne~~~l~~lhtlflReHNria~~L~~~np~w~de~lFqeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~~ 281 (530)
T PF03098_consen 202 RCFLAGDPRVNENPGLTALHTLFLREHNRIADELKKINPHWDDERLFQEARRIVIAQYQHIVYNEYLPALLGPEAMNKFL 281 (530)
T ss_dssp GSB-TSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHHS
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhhhhHhhhhhhhcchhhhhhcc
Confidence 45667779999999999887 9999999999999999999865 99999985 788998999998
Q ss_pred cCCCCCCCCCCCCCCCCcchHHHHHHHHHHhhcccccCccccccccCccchhhhhccccCCcchhccccccccccccCCC
Q psy7312 136 LSPKESGYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSG 215 (1013)
Q Consensus 136 L~p~~~Gy~~~Ydp~VnpsIsnEFatAAfRfgHSLIp~~l~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~r~~~~ 215 (1013)
+.+...|++.+|++.++|+|++|||+||||||||||++.+.+++....
T Consensus 282 ~~~~~~g~~~~y~~~~~~~i~~EFa~aA~RfgHs~i~~~~~~~~~~~~-------------------------------- 329 (530)
T PF03098_consen 282 LPPLNNGYYKGYDPSVDPSISNEFAAAAYRFGHSMIPDTYDRWDENFE-------------------------------- 329 (530)
T ss_dssp -G----GCGTTS-TTS--S-BTTH-HHHGGGGGGGS-SEEEEBTTTSB--------------------------------
T ss_pred ccccccccccCCCCCCCCchhHHHHHHHHHhhheeehhhhhhccccCC--------------------------------
Confidence 877667889999999999999999999999999999999875543210
Q ss_pred CCccccccccccccccccccceeccccccCCCCccCcccccccchhcccCch-hhccccChhHHHHHhhcCcccccC--c
Q psy7312 216 QPVQKADRFFTREGVKKAIGTYIINSSLYSGYGKFGNIRENMVMSKQHFKPF-TLYKQTAFDDFMRGLSGQPVQKAD--R 292 (1013)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~l~L~~~~f~p~-~l~~~gg~d~llrG~~~q~a~~~d--~ 292 (1013)
+ ....++|.+.||+|. .++.++|+|++++|+..|+++++| .
T Consensus 330 --~----------------------------------~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~~~a~~~d~~~ 373 (530)
T PF03098_consen 330 --I----------------------------------PEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLASQPAQKVDNPR 373 (530)
T ss_dssp --E----------------------------------TTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHHSEEEHHBTTB
T ss_pred --c----------------------------------ccccccccccccCcchhhhhccchHHHHhHHhhCccccccHHH
Confidence 0 012478999999999 888889999999999999999999 9
Q ss_pred cCcHHHHHhhhcCCCCCc-cchHHHHHHhhhhcCCCChHHHHHHhCCCCCCChhccccCCCchHHHhhhccccC--Ccch
Q psy7312 293 FFTREITDRLFQGEGATG-FDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEPFMDTQCCIRSNERNIT--FSKF 369 (1013)
Q Consensus 293 ~~~~elt~~LF~~~~~~g-lDLaAinIQRGRDHGLP~YN~yR~~CgL~~~~sFeDLt~~~~~~~~i~~~L~~ly--~d~V 369 (1013)
+++++++++||+..+..+ +||+|+|||||||||||+||+||++|||+++++|+||++.++++ ++.++|+.+| ||+|
T Consensus 374 ~~~~~l~~~lf~~~~~~~~~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~-~i~~~L~~~Y~~vddv 452 (530)
T PF03098_consen 374 FLVDDLRNHLFGPRNVPGSLDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDEISDE-EIAAALRALYGHVDDV 452 (530)
T ss_dssp HSHHHHHTSEESTTSSSEEEHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHHHTSH-HHHHHHHHHHSSGGGS
T ss_pred HhhhHhhcccccccCCcchhHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhhhhHH-HHHHHHHHhccchhcc
Confidence 999999999998776554 59999999999999999999999999999999999998877665 6778899998 9999
Q ss_pred hhhhccc--------------------cccccCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHhh-----hhhhHH
Q psy7312 370 DEFQADK--------------------SSHNTDSGKSGILRPPPPPNVPIPPLTPQQLNQAAMVAIQRI-----QDRLNL 424 (1013)
Q Consensus 370 DL~vG~~--------------------a~~rl~~gDRF~yen~~~~~v~~~~Ft~eQL~~i~~~SLari-----d~I~~l 424 (1013)
|||||++ +|.++++||||||||+ +.||++||++|++++|++| ++++.+
T Consensus 453 DL~vG~laE~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~yen~-------~~ft~~ql~~i~~~tla~iic~n~~~~~~i 525 (530)
T PF03098_consen 453 DLWVGGLAEKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYENP-------GSFTPEQLEEIRKTTLARIICDNTDDITRI 525 (530)
T ss_dssp BHHHHHHHS-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTTSC-------TTCTHHHHHHHTTT-HHHHHHHHSTS-SEE
T ss_pred cccceeeeeccccCCCCCHHHHhHHHHHHHHHHhcCcccccCc-------CcCCHHHHHHHHHCCHHHHHHhcCCccccC
Confidence 9999994 4668999999999994 8899999999999999999 568888
Q ss_pred HHHHH
Q psy7312 425 QENLV 429 (1013)
Q Consensus 425 q~~vF 429 (1013)
|+++|
T Consensus 526 q~~~F 530 (530)
T PF03098_consen 526 QPNAF 530 (530)
T ss_dssp ESSTT
T ss_pred CCCCC
Confidence 88876
No 6
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=3.2e-46 Score=444.66 Aligned_cols=269 Identities=16% Similarity=0.141 Sum_probs=205.6
Q ss_pred ccCCCCccccchhHHH--HHHHHHHhhhcccccCCCcccc--cccccccc--------------cc--------------
Q psy7312 78 RSGEAGKCTPLVKCIS--FYAELQELQSQPCNLNANERGV--CCPLRSQP--------------GG-------------- 125 (1013)
Q Consensus 78 ~~~~~~~~~~~~~~~~--f~rEhN~~~~~l~~~~p~w~~~--f~~ar~ip--------------~l-------------- 125 (1013)
.+|+.-|.-|++.+|. |+|||||||++|++.||+|+|+ ||+||+|+ .+
T Consensus 255 ~~Gd~rn~~pGL~~lhtLF~REHNrIad~L~~~nP~w~DE~LFQeAR~Iv~A~~q~I~~~EylP~iLg~~~~~~~~~~~w 334 (633)
T PLN02283 255 ISGDVRNSWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTIDWTVELLKTDTLLAGMRANW 334 (633)
T ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHheeeeeeeccHHhcCCccccccccccc
Confidence 4565558889999887 9999999999999999999865 99999985 33
Q ss_pred ---hhHHHHHHhccCCC--CC---CCCCCCCCCCCcchHHHHHHHHHHhhcccccCccccccccCccchhhhhccccCCc
Q psy7312 126 ---GGRAYTQKFELSPK--ES---GYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRENMVMSKQHFKP 197 (1013)
Q Consensus 126 ---lG~~~~~~y~L~p~--~~---Gy~~~Ydp~VnpsIsnEFatAAfRfgHSLIp~~l~~~~~~~~~~~~~~~~~~~~~p 197 (1013)
+|++++..|++... .+ ||+..++++|+++|+||| +||||| |||||+.+.+.+..+....
T Consensus 335 ~gllg~~~~~~~g~~~~~~~~g~~gy~~~~~~~v~~~is~EF-~aaYR~-Hslip~~~~~~~~~~~~~~----------- 401 (633)
T PLN02283 335 YGLLGKKFKDTFGHIGGPILSGLVGLKKPNNHGVPYSLTEEF-TSVYRM-HSLLPDHLILRDITAAPGE----------- 401 (633)
T ss_pred ccccchhhhhhcccccccccccccCCCccccCCCCcchhHHH-HHHHhh-hhcCCCceecccccccccc-----------
Confidence 35555556654321 22 455567788999999999 689999 9999998765442111000
Q ss_pred chhccccccccccccCCCCCccccccccccccccccccceeccccccCCCCccCcccccccchhcccC-chhhccccChh
Q psy7312 198 FTLYKQTAFDDFMRGLSGQPVQKADRFFTREGVKKAIGTYIINSSLYSGYGKFGNIRENMVMSKQHFK-PFTLYKQTAFD 276 (1013)
Q Consensus 198 ~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~l~L~~~~f~-p~~l~~~gg~d 276 (1013)
+.. ..+.+.+++.+.++. ......++|++
T Consensus 402 -----------------~~~---------------------------------~~~~~~~~l~d~~~~~~~~~l~~~Gl~ 431 (633)
T PLN02283 402 -----------------NKS---------------------------------PPLIEEIPMPELIGLKGEKKLSKIGFE 431 (633)
T ss_pred -----------------ccc---------------------------------ccccccccHHHHHhhcccccccccCHH
Confidence 000 000112455555542 11233467899
Q ss_pred HHHHHhhcCcccccCccCcHHHHHhh-----hcCCCCCccchHHHHHHhhhhcCCCChHHHHHHhCCCCCCChhccccCC
Q psy7312 277 DFMRGLSGQPVQKADRFFTREITDRL-----FQGEGATGFDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEPFM 351 (1013)
Q Consensus 277 ~llrG~~~q~a~~~d~~~~~elt~~L-----F~~~~~~glDLaAinIQRGRDHGLP~YN~yR~~CgL~~~~sFeDLt~~~ 351 (1013)
.+++||..|++++.+.+.++.+...+ ++..++.++||+|+|||||||||||+||+||++|||++++|||||++
T Consensus 432 ~ll~~l~~q~aga~~l~n~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sFedlt~-- 509 (633)
T PLN02283 432 KLMVSMGHQACGALELWNYPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD-- 509 (633)
T ss_pred HHHHHHhhcchhccccccCcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCHHHcCC--
Confidence 99999999999999988887755544 34455689999999999999999999999999999999999999996
Q ss_pred CchHHHhhhccccC---Ccchhhhhcccccc--------------------ccCCCCccccCCCCCCCCCCCCCCHHHHH
Q psy7312 352 DTQCCIRSNERNIT---FSKFDEFQADKSSH--------------------NTDSGKSGILRPPPPPNVPIPPLTPQQLN 408 (1013)
Q Consensus 352 ~~~~~i~~~L~~ly---~d~VDL~vG~~a~~--------------------rl~~gDRF~yen~~~~~v~~~~Ft~eQL~ 408 (1013)
+.+++++|+++| ||+||||||+++|+ |+++||||||||. +++.||++||+
T Consensus 510 --d~e~~~~L~~lY~~~vddVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~-----np~~fT~~gl~ 582 (633)
T PLN02283 510 --DEEAIEVLREVYGDDVEKLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNF-----NEKTYTKKGLE 582 (633)
T ss_pred --CHHHHHHHHHHhCCCHHHHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecC-----CcCcCCHHHHH
Confidence 346778899988 79999999996543 3446999999982 35899999999
Q ss_pred HHHHH-HHHhh
Q psy7312 409 QAAMV-AIQRI 418 (1013)
Q Consensus 409 ~i~~~-SLari 418 (1013)
+|.++ +|++|
T Consensus 583 ~I~~t~tl~dv 593 (633)
T PLN02283 583 WVNTTESLKDV 593 (633)
T ss_pred HHHccCcHHHH
Confidence 99996 99998
No 7
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.62 E-value=50 Score=26.24 Aligned_cols=23 Identities=43% Similarity=0.626 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHccccc-hhhhhc
Q psy7312 973 STFTQDQLREIRKTSLA-RVICDN 995 (1013)
Q Consensus 973 ~~FT~~QL~eIrk~sLa-riiCdN 995 (1013)
+.||++|+.++|.--++ +.|-.|
T Consensus 1 s~FT~~Ql~~L~~Qi~ayK~l~~~ 24 (37)
T PF08880_consen 1 SPFTPAQLQELRAQILAYKYLARN 24 (37)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC
Confidence 57999999999976543 444444
No 8
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=14.80 E-value=1.3e+02 Score=26.24 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=14.4
Q ss_pred hcCCCCChHHhHHHHHH
Q psy7312 861 QLNPEWSDEALFQETRR 877 (1013)
Q Consensus 861 ~~NP~WsDE~LFQeARr 877 (1013)
..||.||-.+|||.|=.
T Consensus 19 e~hP~WDQ~Rl~~aALa 35 (57)
T PF10929_consen 19 ETHPNWDQYRLFQAALA 35 (57)
T ss_pred HcCCCchHHHHHHHHHH
Confidence 46999999999998843
No 9
>PF02425 GBP_PSP: Paralytic/GBP/PSP peptide; InterPro: IPR003463 This family includes insect peptides that are short (23 amino acids) and contain 1 disulphide bridge. The family includes growth-blocking peptide (GBP) of Pseudaletia separata (Oriental armyworm) and the paralytic peptides from Manduca sexta (Tobacco hawkmoth), Heliothis virescens (Noctuid moth), and Spodoptera exigua (Beet armyworm) [] as well as plasmatocyte-spreading peptide (PSP1) []. These peptides function to halt metamorphosis from larvae to pupae.; PDB: 1V28_A 2DJC_A 2EQQ_A 2EQH_A 2EQT_A 1BQF_A 2DJ9_A 1HRL_A 1IRR_A 1B5N_A ....
Probab=14.25 E-value=61 Score=22.91 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=13.4
Q ss_pred cCCCCCcccCCCCCCC
Q psy7312 556 TTCVPFKYRTPDGSCN 571 (1013)
Q Consensus 556 ~~C~~~~~r~~~g~cn 571 (1013)
-+|.+..-||.||.|-
T Consensus 5 ggc~~gy~rtadgrck 20 (23)
T PF02425_consen 5 GGCATGYMRTADGRCK 20 (23)
T ss_dssp SSSSTTEEEETTTEEE
T ss_pred ccccccceEcCCcccc
Confidence 3798888899999983
No 10
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=11.87 E-value=87 Score=35.11 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=38.6
Q ss_pred HHHhhHHHHHHHHhcCCCCChHHhHHHHHHHHHHhhhhhhhhhhhhHhhhc
Q psy7312 848 WLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFLPIILGE 898 (1013)
Q Consensus 848 flReHNriA~~L~~~NP~WsDE~LFQeARrIv~A~~QhIty~E~LP~lLG~ 898 (1013)
|-..||.-++.|+++.|.|+| |.+.|+- ---+.+--|+||-.+||.
T Consensus 160 WGK~h~l~~~~l~~lYPr~~d---FlavR~~--lDP~G~F~N~yl~rllg~ 205 (257)
T PLN00107 160 WGKNRNAAFDGAIAKYKKAGE---FLKVKER--LDPEGLFSSEWSDKILGL 205 (257)
T ss_pred chhccCCCHHHHHHHCcCHHH---HHHHHHH--hCCCCccCCHHHHHHhCc
Confidence 888999999999999999986 7777764 345777789999999975
Done!