RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7312
(1013 letters)
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 325 bits (836), Expect = e-100
Identities = 140/300 (46%), Positives = 168/300 (56%), Gaps = 38/300 (12%)
Query: 610 YRTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVNVAKFRSVTGNTLPSARAIST---G 666
YR+ DGSCNNL+N WG AGT + R+LPP YEDGV+ SV G+ LPS R +S
Sbjct: 1 YRSADGSCNNLQNPLWGAAGTPFTRLLPPVYEDGVS-TPRGSVNGSPLPSPRVVSNKLLA 59
Query: 667 FAQDFDVPSENYTLLVMQWGQFLDHDLTHTPISRGQGGSGISCCRNGKILEPENLHPDCF 726
F P TL++ QWGQF+DHDLT TP S CC + HP+CF
Sbjct: 60 RKNGFIPPDPGLTLMLAQWGQFIDHDLTFTPHSP--------CCAD--------NHPECF 103
Query: 727 PINLPRDDHIFSRFGDTCMEF----LNPRAGFINFGPREQLNQITGYLDGSNIYGSSQDS 782
PI +P D FS FG C+ F G PREQ+NQ+T YLD S +YGSS++
Sbjct: 104 PIPVPPGDPYFSPFGR-CLPFFRSAPACGTGPSCNLPREQINQLTSYLDLSQVYGSSEEE 162
Query: 783 QDFTLDLDFLRLFKGGWLRAQNVR----GKMFLPANSGECTDQASKASCFSAGDGRVNEQ 838
D LR FK G L+ GK LPA + S CF AGD RVNE
Sbjct: 163 ADK------LRTFKDGKLKVNGEFPPPNGKGLLPAPPPGPSGCLS---CFLAGDSRVNEN 213
Query: 839 IELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFLPIILGE 898
L A+H L+LREHNR+A L LNP WSDE LFQE R I+IA+ Q ITYNE+LP +LG
Sbjct: 214 PGLTALHTLFLREHNRIADELKALNPHWSDEKLFQEARLIVIAQYQKITYNEYLPALLGP 273
Score = 144 bits (366), Expect = 2e-36
Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 3/96 (3%)
Query: 912 IIARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEEGGQ 971
+ +L LY DD+DL+ GLAE P+P ++GPT C++ +QF RL+ GDRF+YE
Sbjct: 429 LAEKLKELYGDPDDIDLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLRDGDRFWYE---N 485
Query: 972 PSTFTQDQLREIRKTSLARVICDNADNIQVMQPLAF 1007
P FT +QL EIRKT+LARVICDN I +QP AF
Sbjct: 486 PGVFTGEQLEEIRKTTLARVICDNTPGITRVQPNAF 521
Score = 108 bits (272), Expect = 1e-24
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 247 YGKFGNIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTREITDRLFQGE 306
+F I + + F P + ++ D +RGL+ QP + D + E+ +RLF
Sbjct: 319 LDEFRTIAPEIPLHDTFFNPSRILEEG-IDPLLRGLASQPAELLDNSLSDELRNRLFGPR 377
Query: 307 G--ATGFDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEPFMD 352
+G DL A NIQRGRDHGLP YN++R CG++ A ++ DL +
Sbjct: 378 NFPGSGLDLAALNIQRGRDHGLPPYNEYRRFCGLKPATSFEDLTDEIG 425
Score = 80.4 bits (199), Expect = 2e-15
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 127 GRAYTQKFELSPKESGYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRE 186
G + L +GY DP+++ I+N FA+AAYRFGHSLI +F I
Sbjct: 272 GPDLMRANWLLLYYTGY----DPNVDPSISNEFATAAYRFGHSLIPPGLERLDEFRTIAP 327
Query: 187 NMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTRE 228
+ + F P + ++ D +RGL+ QP + D + E
Sbjct: 328 EIPLHDTFFNPSRILEEG-IDPLLRGLASQPAELLDNSLSDE 368
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 218 bits (557), Expect = 5e-63
Identities = 76/142 (53%), Positives = 98/142 (69%), Gaps = 9/142 (6%)
Query: 760 REQLNQITGYLDGSNIYGSSQDSQDFTLDLDFLRLFKGGWLRAQNVRGKMFLPANSGECT 819
REQLNQ+T +LDGS +YGSS++ LR FKGG L+ Q G+ LP ++
Sbjct: 1 REQLNQVTSFLDGSQVYGSSEEEARK------LRTFKGGLLKTQRRNGRELLPFSNNPTD 54
Query: 820 DQASKAS---CFSAGDGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETR 876
D + ++ CF AGDGRVNEQ L ++H L+LREHNR+A L +LNP W DE LFQE R
Sbjct: 55 DCSLSSAGKPCFLAGDGRVNEQPGLTSMHTLFLREHNRIADELKKLNPHWDDERLFQEAR 114
Query: 877 RIIIAELQHITYNEFLPIILGE 898
+I+IA++QHITYNEFLPI+LG
Sbjct: 115 KIVIAQMQHITYNEFLPILLGR 136
Score = 161 bits (411), Expect = 2e-43
Identities = 54/88 (61%), Positives = 68/88 (77%)
Query: 908 FMQHIIARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYE 967
I +L RLY+SVDD+DLY GL+E P+P ++GPT C++G+QF RL+RGDRF+YE
Sbjct: 291 MSPETIQKLRRLYKSVDDIDLYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRGDRFWYE 350
Query: 968 EGGQPSTFTQDQLREIRKTSLARVICDN 995
GGQPS+FT QL EIRK SLAR+ICDN
Sbjct: 351 NGGQPSSFTPAQLNEIRKVSLARIICDN 378
Score = 135 bits (343), Expect = 2e-34
Identities = 53/113 (46%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 241 SSLYSGYGKFGNIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTREITD 300
L Y G++ + F P LY++ D +RGL+ QP QK DRFFT E+T
Sbjct: 184 ERLDENYRPQGSVN----LHDLFFNPDRLYEEGGLDPLLRGLATQPAQKVDRFFTDELTT 239
Query: 301 RLFQGEGAT-GFDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEPFMD 352
F G G DL A NIQRGRDHGLPGYND+RE CG+ RA T++DL M
Sbjct: 240 HFFFRGGNPFGLDLAALNIQRGRDHGLPGYNDYREFCGLPRATTFDDLLGIMS 292
Score = 116 bits (293), Expect = 7e-28
Identities = 43/102 (42%), Positives = 59/102 (57%)
Query: 127 GRAYTQKFELSPKESGYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRE 186
GR +KF L SGY YDP+++ I N FA+AA+RFGHSL+ G F + +
Sbjct: 135 GRELMEKFGLYLLTSGYFNGYDPNVDPSILNEFAAAAFRFGHSLVPGTFERLDENYRPQG 194
Query: 187 NMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTRE 228
++ + F P LY++ D +RGL+ QP QK DRFFT E
Sbjct: 195 SVNLHDLFFNPDRLYEEGGLDPLLRGLATQPAQKVDRFFTDE 236
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 194 bits (496), Expect = 5e-53
Identities = 103/306 (33%), Positives = 143/306 (46%), Gaps = 50/306 (16%)
Query: 626 GKAGTAYQRILPPKYEDGVNVA----KFRSVTGNTLPSARAISTGF---AQDFDVPSENY 678
G + T R LPP YEDG + K R G TLPS R +S + P + Y
Sbjct: 1 GASNTPLARWLPPIYEDGFSEPVGWNKERLYNGFTLPSVREVSNKIMRTSSTAVTPDDLY 60
Query: 679 TLLVMQWGQFLDHDLTHTP--ISRGQGGSGISC---CRNGKILEPENLHPDCFPINLPRD 733
+ ++ WGQ++DHD+ TP +SR C C EN +P CFPI LP +
Sbjct: 61 SHMLTVWGQYIDHDIDFTPQSVSRTMFIGSTDCKMTC--------ENQNP-CFPIQLPSE 111
Query: 734 DHIFSRFGDTCMEFLNPRAG------------FINFGPREQLNQITGYLDGSNIYGSSQD 781
D G C+ F A PREQ+N +T ++D S +YGS+
Sbjct: 112 DPRIL--GRACLPFFRSSAVCGTGDTSTLFGNLSLANPREQINGLTSFIDASTVYGSTLA 169
Query: 782 SQ----DFTLDLDFLRLFKGGWLRAQNVRGKMFLPANSGECTDQASKAS------CFSAG 831
D + D LR+ + G+ +LP E + + CF AG
Sbjct: 170 LARSLRDLSSDDGLLRVNSK-----FDDSGRDYLPFQPEEVSSCNPDPNGGERVPCFLAG 224
Query: 832 DGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEF 891
DGR +E + L A H LWLREHNR+A L +NP W E ++QE R+I+ A Q IT+ ++
Sbjct: 225 DGRASEVLTLTASHTLWLREHNRLARALKSINPHWDGEQIYQEARKIVGALHQIITFRDY 284
Query: 892 LPIILG 897
+P ILG
Sbjct: 285 IPKILG 290
Score = 91.0 bits (226), Expect = 8e-19
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 264 FKPFTLYKQTAFDDFMRGLSGQP--VQKADRFFTREITDRLFQGEGATGFDLFAFNIQRG 321
F P+ L ++ D +RGL G P + D E+T++LF ++ DL + N+QRG
Sbjct: 355 FSPWRLVREGGLDPVIRGLIGGPAKLVTPDDLMNEELTEKLFVLSNSSTLDLASLNLQRG 414
Query: 322 RDHGLPGYNDWREVCGMRRARTWNDL 347
RDHGLPGYNDWRE CG+ R T DL
Sbjct: 415 RDHGLPGYNDWREFCGLPRLATPADL 440
Score = 90.6 bits (225), Expect = 1e-18
Identities = 43/99 (43%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 910 QHIIARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEEG 969
Q + ++ LY+ D++D++ GLAE LP A GP CL+G Q L+ GDRF++E
Sbjct: 447 QAVADKILDLYKHPDNIDVWLGGLAEDFLPGARTGPLFACLIGKQMKALRDGDRFWWE-- 504
Query: 970 GQPSTFTQDQLREIRKTSLARVICDNADNIQVMQPLAFL 1008
+ FT Q RE+RK SL+RVICDN +V P AF
Sbjct: 505 -NSNVFTDAQRRELRKHSLSRVICDNTGLTRVP-PDAFQ 541
Score = 51.3 bits (123), Expect = 2e-06
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 142 GYTRLYDPDLNAGITNVFASAAYRFGHSLIQ-------GNFHGYGKFGNIRENMVMSKQH 194
GY YDP +N ++NVF++AA+RFGH+ I NF + N+ +
Sbjct: 299 GYYEGYDPTVNPTVSNVFSTAAFRFGHATIHPTVRRLDENFQEHPVLPNL----ALHDAF 354
Query: 195 FKPFTLYKQTAFDDFMRGLSGQP 217
F P+ L ++ D +RGL G P
Sbjct: 355 FSPWRLVREGGLDPVIRGLIGGP 377
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 179 bits (455), Expect = 9e-49
Identities = 83/248 (33%), Positives = 102/248 (41%), Gaps = 70/248 (28%)
Query: 656 TLPSARAIS-TGFAQDFDVP-SENYTLLVMQWGQFLDHDLTHTPISRGQGGSGISCCRNG 713
PS R IS Q +P S + WGQFLDHD+ TP
Sbjct: 1 DRPSPREISNAVADQTESIPNSRGLSDWFWVWGQFLDHDIDLTP---------------- 44
Query: 714 KILEPENLHPDCFPINLPRDDHIFSRFGDTCMEFLNPRAGFINFGPREQLNQITGYLDGS 773
D E +N IT Y+DGS
Sbjct: 45 ----------------------------DNPREQIN---------------AITAYIDGS 61
Query: 774 NIYGSSQDSQDFTLDLDFLRLFKGGWLRAQNVRGKMFLP---ANSGECTDQASKASCFSA 830
N+YGS ++ D LR F GG L+ LP A F A
Sbjct: 62 NVYGSDEER------ADALRSFGGGKLKTSVANAGDLLPFNEAGLPNDNGGVPADDLFLA 115
Query: 831 GDGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNE 890
GD R NE L A+H L++REHNR+A LA+ NP SDE ++Q R I+IAE+Q ITYNE
Sbjct: 116 GDVRANENPGLTALHTLFVREHNRLADELARRNPSLSDEEIYQAARAIVIAEIQAITYNE 175
Query: 891 FLPIILGE 898
FLP +LGE
Sbjct: 176 FLPALLGE 183
Score = 91.6 bits (228), Expect = 2e-19
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 910 QHIIARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEEG 969
+ ARL+ +Y VD +DL+ GLAE + ++G T ++ DQF+RL+ GDRFFYE
Sbjct: 326 PDLAARLASVYGDVDQIDLWVGGLAEDHVNGGLVGETFSTIIADQFTRLRDGDRFFYEN- 384
Query: 970 GQPSTFTQDQLREIRKTSLARVICDNADNIQVMQPLAFL 1008
D++ +I T+LA VI N D + +Q FL
Sbjct: 385 ---DDLLLDEIADIENTTLADVIRRNTD-VDDIQDNVFL 419
Score = 75.4 bits (186), Expect = 4e-14
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 251 GNIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTREITDRLFQGEGATG 310
G ++ + F P L ++ D +RGL+ Q Q+ D F ++ + LF GA G
Sbjct: 227 GTEATSLALRDAFFNPDEL-EENGIDPLLRGLASQVAQEIDTFIVDDVRNFLFGPPGAGG 285
Query: 311 FDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDL 347
FDL A NIQRGRDHGLP YN RE G+ +++D+
Sbjct: 286 FDLAALNIQRGRDHGLPSYNQLREALGLPAVTSFSDI 322
Score = 60.8 bits (148), Expect = 2e-09
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 147 YDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRENMVMSKQHFKPFTLYKQTAF 206
YD +N GI+N F++AAYRFGHS++ + G ++ + F P L ++
Sbjct: 192 YDETVNPGISNEFSTAAYRFGHSMLSSELLRGDEDGTEATSLALRDAFFNPDEL-EENGI 250
Query: 207 DDFMRGLSGQPVQKADRF 224
D +RGL+ Q Q+ D F
Sbjct: 251 DPLLRGLASQVAQEIDTF 268
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 166 bits (423), Expect = 2e-44
Identities = 76/186 (40%), Positives = 101/186 (54%), Gaps = 26/186 (13%)
Query: 731 PRDDHIFSRFGDTCMEFLNPRAG---------FINFGPREQLNQITGYLDGSNIYGSS-- 779
P DD R G C+EF+ A F + PREQ+NQ+T Y+D SN+YGSS
Sbjct: 1 PPDDP--RRRGHRCIEFVRSSAVCGSGSTSLLFNSVTPREQINQLTSYIDASNVYGSSDE 58
Query: 780 --QDSQDFTLDLDFLRLFKGGWLRAQNVRGKMFLPANSGECTD-----QASKASCFSAGD 832
+ +D D LR+ + GK LP D S CF AGD
Sbjct: 59 EALELRDLASDRGLLRV------GIVSEAGKPLLPFERDSPMDCRRDPNESPIPCFLAGD 112
Query: 833 GRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFL 892
R NEQ+ L ++H LWLREHNR+A+ L +LNP W E ++ ETR+I+ A++QHITY+ +L
Sbjct: 113 HRANEQLGLTSMHTLWLREHNRIASELLELNPHWDGETIYHETRKIVGAQMQHITYSHWL 172
Query: 893 PIILGE 898
P ILG
Sbjct: 173 PKILGP 178
Score = 137 bits (346), Expect = 2e-34
Identities = 51/108 (47%), Positives = 70/108 (64%), Gaps = 5/108 (4%)
Query: 906 KHFMQH--IIARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDR 963
K+ +++ + +L RLY ++DL+ G+ E LP A +GPTL CLL +QF RL+ GDR
Sbjct: 326 KNEIKNDDVREKLKRLYGHPGNIDLFVGGILEDLLPGARVGPTLACLLAEQFRRLRDGDR 385
Query: 964 FFYEEGGQPSTFTQDQLREIRKTSLARVICDNADNIQVMQPLAFLKPS 1011
F+YE P F+ QL +I+KTSLARV+CDN DNI +Q FL P
Sbjct: 386 FWYE---NPGVFSPAQLTQIKKTSLARVLCDNGDNITRVQEDVFLVPG 430
Score = 100 bits (250), Expect = 4e-22
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 235 GTYIINSSLYSGYGKFGNIRE-NMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQ--KAD 291
G +IN L+ F I E ++ + K F P+ L + D +RGL + D
Sbjct: 210 GHTLINPILFRLDEDFQPIPEGHLPLHKAFFAPYRLVNEGGIDPLLRGLFATAAKDRVPD 269
Query: 292 RFFTREITDRLFQGEGATGFDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLE 348
+ E+T++LF+ DL A NIQRGRDHGLPGYND+R+ C + A T+ DL+
Sbjct: 270 QLLNTELTEKLFEMAHEVALDLAALNIQRGRDHGLPGYNDYRKFCNLSVAETFEDLK 326
Score = 63.9 bits (156), Expect = 2e-10
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 138 PK---ESGYTRL-----YDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGK-FGNIRE-N 187
PK G L Y+P++N I N FA+AA+RFGH+LI + F I E +
Sbjct: 173 PKILGPVGMEMLGEYRGYNPNVNPSIANEFATAAFRFGHTLINPILFRLDEDFQPIPEGH 232
Query: 188 MVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQK 220
+ + K F P+ L + D +RGL +
Sbjct: 233 LPLHKAFFAPYRLVNEGGIDPLLRGLFATAAKD 265
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 160 bits (406), Expect = 7e-43
Identities = 71/147 (48%), Positives = 86/147 (58%), Gaps = 13/147 (8%)
Query: 762 QLNQITGYLDGSNIYGSSQDSQDFTLDLDFLRLFKGGWLRAQNV----RGKMFLP---AN 814
QLN T YLDGS+IYGS+ D LR FKGG L+ V G LP N
Sbjct: 1 QLNARTPYLDGSSIYGSNPDVARA------LRTFKGGLLKTNEVKGPSYGTELLPFNNPN 54
Query: 815 SGECTDQASKASCFSAGDGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQE 874
T CF AGD RVNE + L A+H L+LREHNR+A L + +PEW DE L+QE
Sbjct: 55 PSMGTIGLPPTRCFIAGDPRVNENLLLLAVHTLFLREHNRLADRLKKEHPEWDDERLYQE 114
Query: 875 TRRIIIAELQHITYNEFLPIILGEYLP 901
R I+IA+ Q ITYNE+LP ILG++
Sbjct: 115 ARLIVIAQYQLITYNEYLPAILGKFTD 141
Score = 78.6 bits (194), Expect = 3e-15
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 272 QTAFDDFMRGLSGQPVQKADRFFTREITDRLFQGEGATGFDLFAFNIQRGRDHGLPGYND 331
T D +RG QP D+ LF G DL A NIQRGRD GLP YN+
Sbjct: 210 DTGLDPLLRGFLRQPAGLIDQNVDDV--MFLFGPLEGVGLDLAALNIQRGRDLGLPSYNE 267
Query: 332 WREVCGMRRARTWNDLEPFMD 352
R G++ ++ D+ +
Sbjct: 268 VRRFIGLKPPTSFQDILTDPE 288
Score = 77.5 bits (191), Expect = 6e-15
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 912 IIARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEEGGQ 971
+ +L+ LY DDVDL+ GL E +P A LG L ++ +QF RL GDRF+Y
Sbjct: 289 LAKKLAELYGDPDDVDLWVGGLLEKKVPPARLGELLATIILEQFKRLVDGDRFYYVNYNP 348
Query: 972 PSTFTQDQLREIRKTSLARVICDN 995
+++L ++ SLA +IC N
Sbjct: 349 FGKSGKEELEKL--ISLADIICLN 370
Score = 55.9 bits (135), Expect = 5e-08
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 135 ELSPKESGYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRENMVMSKQH 194
P++ DPD+ + + F +AAYRFGHSL+ + G +E + +
Sbjct: 139 FTDPRDDLVLLFPDPDVVPYVLSEFFTAAYRFGHSLVPEGVDRIDENGQPKEIPDVPLKD 198
Query: 195 F---KPFTLYKQTAFDDFMRGLSGQPVQKADRFFT 226
F ++ T D +RG QP D+
Sbjct: 199 FFFNTSRSILSDTGLDPLLRGFLRQPAGLIDQNVD 233
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 149 bits (379), Expect = 8e-38
Identities = 98/326 (30%), Positives = 151/326 (46%), Gaps = 51/326 (15%)
Query: 614 DGSCNNLENMAWGKAGTAYQRILPPKYEDGVNVAKFRSVTGNTLPSARAISTGFAQDFD- 672
DG NNL + WG A + R LP Y DGV + +G P+ R++S +
Sbjct: 2 DGWYNNLAHPEWGAADSRLTRRLPAHYSDGVY-----APSGEERPNPRSLSNLLMKGESG 56
Query: 673 VPS-ENYTLLVMQWGQFLDHDLTHTPISRGQGGSGISCCRNGKILEPENLHPDCFPINLP 731
+PS N T L++ +GQ H ++ + G C P P+ F I +P
Sbjct: 57 LPSTRNRTALLVFFGQ---HVVSEILDASRPG------C-------P----PEYFNIEIP 96
Query: 732 RDDHIFSRF--GDTCMEFL----NPRAGFINFGPREQLNQITGYLDGSNIYGSSQDSQDF 785
+ D +F G+ + F + G+ PREQLN++T ++DGS+IYGSS+
Sbjct: 97 KGDPVFDPECTGNIELPFQRSRYDKNTGYSPNNPREQLNEVTSWIDGSSIYGSSKAW--- 153
Query: 786 TLDLDFLRLFKGGWLRAQNVRGK---------MFLPANSGECTDQASKASCFSAGDGRVN 836
D LR F GG L + + G + P F G+ R N
Sbjct: 154 ---SDALRSFSGGRLASGDDGGFPRRNTNRLPLANPPPPSY-HGTRGPERLFKLGNPRGN 209
Query: 837 EQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFLPIIL 896
E L +LW R HN +A +A+ +P+WSDE +FQE R+ +IA Q+I + E+LP +L
Sbjct: 210 ENPFLLTFGILWFRYHNYLAQRIAREHPDWSDEDIFQEARKWVIATYQNIVFYEWLPALL 269
Query: 897 GEYLPQTPKKHFMQHIIARLSRLYES 922
G +P P + H+ +S +++
Sbjct: 270 GTNVP--PYTGYKPHVDPGISHEFQA 293
Score = 65.8 bits (161), Expect = 7e-11
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 276 DDFMRGLSGQPVQKADRFFTREITDRLFQGEGATGFDLFAFNIQRGRDHGLPGYNDWREV 335
D+ + G++ Q ++ D ++ D LF + DL A NIQRGRDHGLP YN RE
Sbjct: 348 DELLLGMASQIAEREDNIIVEDLRDYLFGPLEFSRRDLMALNIQRGRDHGLPDYNTAREA 407
Query: 336 CGMRRARTWNDLEP 349
G+ TW+D+ P
Sbjct: 408 FGLPPRTTWSDINP 421
Score = 54.6 bits (132), Expect = 2e-07
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 912 IIARLSRLYE-SVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYE--E 968
++ RL+ LY + +DLY G+ E G ++ DQF RL+ GDRF++E +
Sbjct: 430 LLERLAELYGNDLSKLDLYVGGMLE--SKGGGPGELFRAIILDQFQRLRDGDRFWFENVK 487
Query: 969 GGQPSTFTQDQLREIRKTSLARVI 992
G FT +++ EIR T+L VI
Sbjct: 488 NGL---FTAEEIEEIRNTTLRDVI 508
Score = 39.6 bits (93), Expect = 0.008
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 147 YDPDLNAGITNVFASAAYRFGHSLI 171
Y P ++ GI++ F +AA+RFGH+L+
Sbjct: 279 YKPHVDPGISHEFQAAAFRFGHTLV 303
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 123 bits (310), Expect = 6e-30
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 14/148 (9%)
Query: 760 REQLNQITGYLDGSNIYGSS----QDSQDFTLDLDFLRLFKGGWLRAQNVRGKMFLPANS 815
REQ+N +T ++D S +YGS + ++ T L L + + G LP +
Sbjct: 12 REQINALTSFVDASMVYGSEPSLAKXLRNLTNQLGLLAVNQRFTDN-----GLALLPFEN 66
Query: 816 GE---C--TDQASKASCFSAGDGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEA 870
C + ++ CF AGD RV+E LAA+H L LREHNR+A L +LNP W E
Sbjct: 67 LHNDPCALRNTSANIPCFLAGDTRVSENPGLAALHTLLLREHNRLARELHRLNPHWDGET 126
Query: 871 LFQETRRIIIAELQHITYNEFLPIILGE 898
L+QE R+I+ A +Q ITY ++LP+ILGE
Sbjct: 127 LYQEARKIVGAMVQIITYRDYLPLILGE 154
Score = 80.2 bits (198), Expect = 1e-15
Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 915 RLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEEGGQPST 974
+L LY + D++D++ G+AE +P +GP L CL+ QF R++ GDRF++E P
Sbjct: 313 KLLDLYGTPDNIDIWIGGVAEPLVPGGRVGPLLACLISRQFRRIRDGDRFWWE---NPGV 369
Query: 975 FTQDQLREIRKTSLARVICDN 995
FT++Q +R SL+R+ICDN
Sbjct: 370 FTEEQRESLRSVSLSRIICDN 390
Score = 79.4 bits (196), Expect = 2e-15
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 259 MSKQHFKPFTLYKQTAFDDFMRGLSGQP--VQKADRFFTREITDRLFQGEGATGFDLFAF 316
+ K F + + ++ D +RGL P + ++ E+ +RLFQ G DL A
Sbjct: 211 LHKAFFASWRIIREGGIDPILRGLMATPAKLNNQNQMLVDELRERLFQQTKRMGLDLAAL 270
Query: 317 NIQRGRDHGLPGYNDWREVCGMRRARTWNDL 347
N+QRGRDHGLPGYN WR CG+ + + +L
Sbjct: 271 NLQRGRDHGLPGYNAWRRFCGLSQPQNLAEL 301
Score = 33.9 bits (78), Expect = 0.41
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 145 RLYDPDLNAGITNVFASAAYRFGHSLIQ-------GNFHGYGKFGNIRENMVMSKQHFKP 197
R Y+ ++ I NVF +A R GH+ +Q N+ + + + K F
Sbjct: 164 RGYNESVDPRIANVFTTAF-RRGHTTVQPFVFRLDENYQPHPPNPQVP----LHKAFFAS 218
Query: 198 FTLYKQTAFDDFMRGLSGQPVQK 220
+ + ++ D +RGL P +
Sbjct: 219 WRIIREGGIDPILRGLMATPAKL 241
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 92.3 bits (230), Expect = 2e-19
Identities = 45/142 (31%), Positives = 64/142 (45%), Gaps = 31/142 (21%)
Query: 771 DGSNIYGSSQDSQDFTLDLDFLRLFKGGWLRAQNVRGKMF----------------LPAN 814
D S IYG ++ LRLFK G L++Q + G+ + L
Sbjct: 132 DLSQIYGLTEARTHA------LRLFKDGKLKSQMINGEEYPPYLFEDGGVKMEFPPLVPP 185
Query: 815 SGECTDQASKASCFSAGDGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQE 874
G+ +A F+ G R N L ++ +WLREHNRV IL + +P+W DE LFQ
Sbjct: 186 LGDELTPEREAKLFAVGHERFNLTPGLFMLNTIWLREHNRVCDILKKEHPDWDDERLFQT 245
Query: 875 TRRIIIAEL---------QHIT 887
R I+I EL H++
Sbjct: 246 ARNILIGELIKIVIEDYINHLS 267
Score = 52.7 bits (127), Expect = 7e-07
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 914 ARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLG-DQFSRL---KRGDRFFYEEG 969
A L LY VD V+ Y AE P P++ L P +V ++ D FS +
Sbjct: 402 AELEELYGDVDAVEFYVGLFAEDPRPNSPLPPLMVEMVAPDAFSGALTNPLLSPEVW--- 458
Query: 970 GQPSTFTQDQLREIRKT-SLARVICDNAD 997
+PSTF + +I KT +L ++C N
Sbjct: 459 -KPSTFGGEGGFDIVKTATLQDLVCRNVK 486
Score = 31.5 bits (72), Expect = 2.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 318 IQRGRDHGLPGYNDWREVCGMRRARTWNDL 347
I++GR L +ND+R+ G+ ++ +L
Sbjct: 365 IEQGRKLRLASFNDYRKRFGLPPYTSFEEL 394
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 74.6 bits (184), Expect = 9e-14
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 758 GPREQLNQITGYLDGSNIYGSSQDSQDFTLDLDFLRLF-KGGWLRAQNVRGKMFLPANSG 816
GP +N T + DGS IYGS++++Q LR F G L+ + LP +
Sbjct: 82 GPPTYINTNTHWWDGSQIYGSTEEAQKR------LRTFPPDGKLK---LDADGLLPVDEH 132
Query: 817 ECTDQASKASCFSAGDGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETR 876
+ G L+ +H L++REHN + L + P+WSDE LF + R
Sbjct: 133 TGLPLTGFNDNWWVG---------LSLLHTLFVREHNAICDALRKEYPDWSDEQLFDKAR 183
Query: 877 RIIIAELQHITYNEFLPIILG 897
+ A + I E+ P IL
Sbjct: 184 LVNAALMAKIHTVEWTPAILA 204
Score = 45.0 bits (107), Expect = 2e-04
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 611 RTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVNVAKFRSVTGNTLPSARAISTGF--A 668
RT DGS N+L+N + G GT + R +P + K +T P+ R IS
Sbjct: 1 RTADGSYNDLDNPSMGSVGTRFGRNVPL--DATFPEDKDELLT----PNPRVISRRLLAR 54
Query: 669 QDFDVPSENYTLLVMQWGQFLDHD-LTHTP 697
+F P+ + LL W QF+ HD +H P
Sbjct: 55 TEFK-PATSLNLLAAAWIQFMVHDWFSHGP 83
Score = 42.7 bits (101), Expect = 0.001
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 311 FDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDL 347
DL A +I R R+ G+P YN++R + + A+++ DL
Sbjct: 340 IDLAAIDILRDRERGVPRYNEFRRLLHLPPAKSFEDL 376
Score = 29.9 bits (68), Expect = 8.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 564 RTPDGSCNNLENMAWGKAGT 583
RT DGS N+L+N + G GT
Sbjct: 1 RTADGSYNDLDNPSMGSVGT 20
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 74.4 bits (183), Expect = 1e-13
Identities = 86/341 (25%), Positives = 109/341 (31%), Gaps = 98/341 (28%)
Query: 678 YTLLVMQWGQFLDHDLTHTPISRGQGGSGISCCRNGKILEPENLHPDCFPINLPRDDHIF 737
Y + +GQF DH L P +GG NG +L P L PD +L R +
Sbjct: 13 YNSWMTFFGQFFDHGLDFIP----KGG-------NGTVLIP--LPPDDPLYDLGRGTNGM 59
Query: 738 SRFGDTCMEFLNPRAGFINFGPREQLNQITGYLDGSNIYGSSQDSQDFTLDLD------- 790
+ T G E N T ++D + YGS Q F + D
Sbjct: 60 ALDRGT-NNAGPDGILGTADGEGEHTNVTTPFVDQNQTYGSHASHQVFLREYDGDGVATG 118
Query: 791 ----------------FLR--------LFKGGWLRAQNVRGKMFLPANSGECTDQASKAS 826
FL G LR A G ++ A
Sbjct: 119 RLLEGATGGSARTGHAFLDDIAHNAAPKGGLGSLRDNPTEDPPGPGAP-GSYDNELLDAH 177
Query: 827 CFSAGDGRVNEQIELAAIHMLWLREHNR-VATILAQL---------------NPEWSDEA 870
F AGDGRVNE I L A+H ++ REHNR V I L N W E
Sbjct: 178 -FVAGDGRVNENIGLTAVHTVFHREHNRLVDQIKDTLLQSADLAFANEAGGNNLAWDGER 236
Query: 871 LFQETRRIIIAELQHITYNEFL---------------------PIILGEYLPQTPKKHFM 909
LFQ R + QH+ + EF P I E+
Sbjct: 237 LFQAARFANEMQYQHLVFEEFARRIQPGIDGFGSFNGYNPEINPSISAEF---------- 286
Query: 910 QHIIARL--SRLYESVD--DVDLYTAGLAEFPLPDAMLGPT 946
H + R S L E+V D + L DA L P
Sbjct: 287 AHAVYRFGHSMLTETVTRIGPDADEGLDNQVGLIDAFLNPV 327
Score = 52.0 bits (125), Expect = 1e-06
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 923 VDDVDLYTAGLAEFPLPDA-MLGPTLVCLLGDQFSRLKRGDRFFYEEGGQPSTFTQDQLR 981
+D+VDL+ GLAE +P MLG T + +Q RL+ GDRF+Y T D L
Sbjct: 483 LDNVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGDRFYYLS----RTAGLDLLN 538
Query: 982 EIRKTSLARVICDNAD 997
++ + A +I N
Sbjct: 539 QLENNTFADMIMRNTG 554
Score = 50.5 bits (121), Expect = 3e-06
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 147 YDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRENMVMS-------KQHFKPFT 199
Y+P++N I+ FA A YRFGHS++ G + + + F P T
Sbjct: 274 YNPEINPSISAEFAHAVYRFGHSMLTETVTRIGPDADEGLDNQVGLIDAFLNPVAFLPAT 333
Query: 200 LYKQTAFDDFMRGLSGQPVQKADRFFT 226
LY + +RG++ Q + D F T
Sbjct: 334 LYAEEGAGAILRGMTRQVGNEIDEFVT 360
Score = 48.2 bits (115), Expect = 2e-05
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 264 FKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTREITDRLFQGEGATGFDLFAFNIQRGRD 323
F P TLY + +RG++ Q + D F T + + L DL A NI RGRD
Sbjct: 329 FLPATLYAEEGAGAILRGMTRQVGNEIDEFVTDALRNNLV----GLPLDLAALNIARGRD 384
Query: 324 HGLPGYNDWRE 334
GLP N+ R
Sbjct: 385 TGLPTLNEARA 395
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 52.7 bits (127), Expect = 7e-07
Identities = 50/227 (22%), Positives = 70/227 (30%), Gaps = 80/227 (35%)
Query: 685 WGQFLDHDLTHTPISRGQGGSGISCCRNGKILEPENLHPDCFPINLPRDDHIFSRFGDTC 744
GQF+DHD+T S L P + P
Sbjct: 53 LGQFIDHDITLDTTS---------------SLAPRQIDPA-------------------- 77
Query: 745 MEFLNPRAGFINFGPREQLNQITGYLDGSNIYGSSQDSQDFTLDLDFLRLFKGGWLRAQN 804
E N R T LD ++YG D + D N
Sbjct: 78 -ELRNFR---------------TPALDLDSVYGGGPDGSPYLYDQ-----------ATPN 110
Query: 805 VRGKMFLPANS-----GECTD--------QASKASCFSAGDGRVNEQIELAAIHMLWLRE 851
K+ + S G D A GD R +E + +A +H+ +LR
Sbjct: 111 DGAKLRVGRESPGGPGGLPGDGARDLPRNGQGTAL---IGDPRNDENLIVAQLHLAFLRF 167
Query: 852 HNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFLPIILGE 898
HN V L + LF+E RR++ Q + N+FLP I
Sbjct: 168 HNAVVDALRAHGTPGDE--LFEEARRLVRWHYQWLVLNDFLPRICDP 212
Score = 32.3 bits (74), Expect = 1.5
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 159 FASAAYRFGHSLIQGNF 175
F+ AAYRFGHS+++ ++
Sbjct: 240 FSVAAYRFGHSMVRASY 256
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 51.3 bits (123), Expect = 2e-06
Identities = 66/284 (23%), Positives = 113/284 (39%), Gaps = 57/284 (20%)
Query: 608 FKYRTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVNVAKFRSVTGNTLPSARA-ISTG 666
+ YRT DG CN+ N G GT + R +PP + + SV L + + I TG
Sbjct: 83 YPYRTADGKCNDPFNEGAGSQGTFFGRNMPPVDQKDKLLDPHPSVVATKLLARKKFIDTG 142
Query: 667 FAQDFDVPSENYTLLVMQWGQFLDHD-LTHTPISRGQGGSGISCCRNGKILEPENLHPDC 725
+ + ++ W QF+ HD + H ++ + P+ + C
Sbjct: 143 ---------KQFNMIAASWIQFMIHDWIDHLEDTQQIE-----------LTAPKEVASQC 182
Query: 726 FPINLPRDDHIFSRFGDTCMEFLNPRAGFINFGPREQLNQITGYLDGSNIYGSSQDSQDF 785
P F + + + + G +N T + DGS IYGS++
Sbjct: 183 -----PLKSFKFYKTKEVPTGSPDIKTGSLNIR--------TPWWDGSVIYGSNEKG--- 226
Query: 786 TLDLDFLRLFKGGWLRAQNVRGKMFLPANSGECTDQASKASCFSAGDGRVNEQIELAAIH 845
L +R FK G L+ + L D+ +GD R N ++ +
Sbjct: 227 ---LRRVRTFKDGKLK---ISEDGLLL------HDEDGIPI---SGDVR-NSWAGVSLLQ 270
Query: 846 MLWLREHNRVATILAQLNPEWSDEALFQETRRI---IIAELQHI 886
L+++EHN V L + P++ DE L++ R + +IA++ I
Sbjct: 271 ALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTI 314
>gnl|CDD|197829 smart00680, CLIP, Clip or disulphide knot domain. Present in
horseshoe crab proclotting enzyme N-terminal domain,
Drosophila Easter and silkworm
prophenoloxidase-activating enzyme.
Length = 52
Score = 40.6 bits (95), Expect = 9e-05
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 75 CATRSGEAGKCTPLVKCISFYAELQE--------LQSQPCNLNANERGVCCP 118
C T GE G C P+ C S + L++ L+ C E VCCP
Sbjct: 1 CRTPDGERGTCVPISDCPSLLSLLKKDPPEDLNFLRKSQCGFGNREPLVCCP 52
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 44.6 bits (106), Expect = 2e-04
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 589 HLLFQILADTCPKITTCV---PFKYRTPDGSCNNLENMAWGKAGTAYQRILPPK 639
L L D P +KYR DGS NN+ N G AG+ Y R +PPK
Sbjct: 9 GGLVDTLWDDLPHPPDSYLGDNYKYRKADGSNNNILNPRLGAAGSPYARSVPPK 62
Score = 36.5 bits (85), Expect = 0.066
Identities = 37/135 (27%), Positives = 49/135 (36%), Gaps = 49/135 (36%)
Query: 764 NQITGYLDGSNIYGSSQDSQDFTLDLDFLRLFKGGWLRAQNVRGKMFLPANSGECTDQAS 823
N + YLD S +YGS+Q+ Q+ +R K G L
Sbjct: 118 NNTSSYLDLSPLYGSNQEEQNK------VRTMKDGKL----------------------- 148
Query: 824 KASCFSAGDGRVNEQIELA-AIHMLWLREHNRVATILAQLN-----------------PE 865
K FS D R+ Q A+ +++ R HN V LAQ+N E
Sbjct: 149 KPDTFS--DKRLLGQPPGVCALLVMFNRFHNYVVEQLAQINEGGRFTPPGDKLDSSAKEE 206
Query: 866 WSDEALFQETRRIII 880
DE LFQ R I
Sbjct: 207 KLDEDLFQTARLITC 221
Score = 35.4 bits (82), Expect = 0.19
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 560 PFKYRTPDGSCNNLENMAWGKAGT 583
+KYR DGS NN+ N G AG+
Sbjct: 30 NYKYRKADGSNNNILNPRLGAAGS 53
Score = 31.9 bits (73), Expect = 2.0
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 887 TYNEFLPIILGEYLPQTPKKHF----MQHIIAR-LSRLYESVDDVDLYTAGLAEFPLPDA 941
T NEF + P + F +A L LY D+V+LY +AE P
Sbjct: 390 TLNEFRK-----FFGLKPYETFEDINSDPEVAEALELLYGHPDNVELYPGLVAEDAKP-P 443
Query: 942 MLGPTLVC--------LLGDQFSRLKRGDRFFYEEGGQPSTFTQDQLREI 983
M + +C +L D + L RGDR FY P+ T E+
Sbjct: 444 MPPGSGLCPGYTISRAILSDAVA-LVRGDR-FYTVDYNPNNLTNWGYAEV 491
>gnl|CDD|221387 pfam12032, CLIP, Regulatory CLIP domain of proteinases. CLIP is a
regulatory domain which controls the proteinase action
of various proteins of the trypsin family, e.g. easter
and pap2. The CLIP domain remains linked to the protease
domain after cleavage of a conserved residue which
retains the protein in zymogen form. It is named CLIP
because it can be drawn in the shape of a paper clip. It
has many disulphide bonds and highly conserved cysteine
residues, and so it folds extensively.
Length = 54
Score = 30.1 bits (68), Expect = 0.64
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 11/54 (20%)
Query: 75 CATRSGEAGKCTPLVKCISFYAELQE----------LQSQPCNLNANERG-VCC 117
C T +GE G C + +C S L++ L+ C + VCC
Sbjct: 1 CTTPNGEPGTCVSIRECPSLLKILKKPNLTPEDTNFLRKSQCGFEGSNDPLVCC 54
>gnl|CDD|241284 cd01253, PH_ARHGAP21-like, ARHGAP21 and related proteins pleckstrin
homology (PH) domain. ARHGAP family genes encode
Rho/Rac/Cdc42-like GTPase activating proteins with a
RhoGAP domain. These proteins functions as a
GTPase-activating protein (GAP) for RHOA and CDC42.
ARHGAP21 controls the Arp2/3 complex and F-actin
dynamics at the Golgi complex by regulating the activity
of the small GTPase Cdc42. It is recruited to the Golgi
by to GTPase, ARF1, through its PH domain and its
helical motif. It is also required for CTNNA1
recruitment to adherens junctions. ARHGAP21 and it
related proteins all contains a PH domain and a RhoGAP
domain. Some of the members have additional N-terminal
domains including PDZ, SH3, and SPEC. The ARHGAP21 PH
domain interacts with the GTPbound forms of both ARF1
and ARF6 ARF-binding domain/ArfBD. The members here
include: ARHGAP15, ARHGAP21, and ARHGAP23. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 113
Score = 30.4 bits (69), Expect = 1.8
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 13/65 (20%)
Query: 322 RDHGLPGYNDWREVCGMRRARTWNDLEPFMDTQCCI---------RSNERNITFSKFDE- 371
R H L Y D RE D E +D + CI R N +T S E
Sbjct: 32 RGHSLYLYKDKRET--SPALSAAEDSEQRIDIRSCIVDIAYSYTKRKNVFRLTTSDGSEY 89
Query: 372 -FQAD 375
FQA+
Sbjct: 90 LFQAE 94
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 226
Score = 31.1 bits (71), Expect = 2.3
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 844 IHMLWLREHNRVATILAQLNPEWSDEALFQETRR---IIIAE--LQHITYNEFLPIILGE 898
IH LRE L+ + E E + +E + I++ E + Y ++ G
Sbjct: 122 IHTYELREW------LSANSYEIKAETILEEDGKIYEILVVEKSSKPALYATEEDLLFGP 175
Query: 899 YLPQTPKKHFMQHIIARLSRLY 920
L + F++ L +LY
Sbjct: 176 KLLKEKSALFLKKWQQELEKLY 197
>gnl|CDD|132809 cd07276, PX_SNX16, The phosphoinositide binding Phox Homology
domain of Sorting Nexin 16. The PX domain is a
phosphoinositide (PI) binding module present in many
proteins with diverse functions. Sorting nexins (SNXs)
make up the largest group among PX domain containing
proteins. They are involved in regulating membrane
traffic and protein sorting in the endosomal system.
The PX domain of SNXs binds PIs and targets the protein
to PI-enriched membranes. SNXs differ from each other
in PI-binding specificity and affinity, and the
presence of other protein-protein interaction domains,
which help determine subcellular localization and
specific function in the endocytic pathway. SNX16
contains a central PX domain followed by a coiled-coil
region. SNX16 is localized in early and recycling
endosomes through the binding of its PX domain to
phosphatidylinositol-3-phosphate (PI3P). It plays a
role in epidermal growth factor (EGF) signaling by
regulating EGF receptor membrane trafficking.
Length = 110
Score = 29.7 bits (67), Expect = 2.9
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 20 PQFTL---GQRFNGENFNGQFLENRLDNRPQQTFQQQVQAVPD 59
P F L +R+ +NF+ FLE R Q F + A D
Sbjct: 56 PGFRLSLPPKRWFKDNFDPDFLEERQ--LGLQAFVNNIMAHKD 96
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 31.2 bits (71), Expect = 3.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 387 GILRPPPPPNVPIPPLTPQQLNQAA 411
G+L PP P +T + + Q A
Sbjct: 1860 GLLDGPPAPGARARAVTEEDIRQLA 1884
>gnl|CDD|234474 TIGR04113, cas_csx17, CRISPR-associated protein Csx17, subtype
Dpsyc. Members of this protein family are found
exclusively in CRISPR-associated (cas) type I system
gene clusters of the Dpsyc subtype. Markers for that
type include a variant form of cas3 (model TIGR02621)
and the GSU0054-like protein family (model TIGR02165).
This family occurs in less than half of known Dpsyc
clusters.
Length = 704
Score = 30.8 bits (70), Expect = 4.3
Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 18/159 (11%)
Query: 278 FMRGLSGQPVQKADRFFTREITDRLFQG--EGATGFDLFAFNIQRGRDHGLPGYNDWREV 335
A +F E+ DR G + D A N +R P + +
Sbjct: 544 QGGPCPASLSDIA-QFLRGELDDRRIADLLWGLSLIDWRASNKRRQM--NKPEKDTEPDA 600
Query: 336 CGMRRARTWNDLEPFMDTQCCIRSNER---NITFSKFDEFQADKSSHNTDSGKSGILR-- 390
+ + L+ + +R + + + D LR
Sbjct: 601 TSL--PAAYALLKLLFAPEALLRRALAETGGRSLPVPRAVLRLLRAGDADRAVELALRRL 658
Query: 391 -----PPPPPNVPIPPLTPQQLNQAAMVAIQRIQDRLNL 424
PP P V + P++L A + I +DR L
Sbjct: 659 RISGLRPPHPGVDVDTHDPRRLAAALLFPIWD-RDRTTL 696
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 30.7 bits (70), Expect = 5.0
Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 26 QRFNGENFNGQ--------FLENRLDNRPQQTFQQQVQAVPDNQQVDGSPNGQLVTPCAT 77
Q F GE +G +L L RP+ + VD L+ P
Sbjct: 1083 QPFGGEGLSGTGPKAGGPLYLYRLLATRPEDALAVTLARQDAEYPVDAQLRAALLAPLTA 1142
Query: 78 RSGEAGKCTP-LVKCISFYAEL 98
A + P L YAEL
Sbjct: 1143 LREWAAEREPELAALCDQYAEL 1164
>gnl|CDD|239545 cd03462, 1,2-CCD, chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type
II enzymes) are homodimeric intradiol dioxygenases that
degrade chlorocatechols via the addition of molecular
oxygen and the subsequent cleavage between two adjacent
hydroxyl groups. This reaction is part of the modified
ortho-cleavage pathway which is a central oxidative
bacterial pathway that channels chlorocatechols, derived
from the degradation of chlorinated benzoic acids,
phenoxyacetic acids, phenols, benzenes, and other
aromatics into the energy-generating tricarboxylic acid
pathway.
Length = 247
Score = 30.0 bits (68), Expect = 5.3
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 555 ITTCVPFKYRTP-DGSCNNLENMAWGKAGTLQNKAHLLFQILADTCPKITTCVPFK---Y 610
+ T VP Y+ P DG L G + AH+ F++ AD +TT + F+ +
Sbjct: 156 VRTTVPVPYQIPNDGPTGALLEAMGGHS---WRPAHVHFKVRADGYETLTTQLYFEGGEW 212
Query: 611 RTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVNV 646
D CN G + ILP EDGV V
Sbjct: 213 VDDD-CCN----------GVKPELILPEVKEDGVRV 237
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 30.1 bits (68), Expect = 6.2
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 373 QADKSSHNTDSGKSGILRPPPPPN--------------VPIPPLTPQQLNQAAMVAIQRI 418
Q + + PPPP+ +P +TP + ++ ++RI
Sbjct: 7 QGNNQKDKNKKKEKKKKESPPPPHEIKRKKKRKGPDAASKLPKVTPNTKCRLRLLKLERI 66
Query: 419 QDRLNLQENLVLNRIVLNP 437
+D L L+E + N+ P
Sbjct: 67 KDYLLLEEEFITNQEAQKP 85
>gnl|CDD|204692 pfam11618, DUF3250, Protein of unknown function (DUF3250). This
family of proteins represents a protein with unknown
function. It may be the C2 domain from KIAA1005 however
this cannot be confirmed.
Length = 106
Score = 28.5 bits (64), Expect = 6.4
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 688 FLDHDLTHTPISRGQ 702
F D + TP+ RG
Sbjct: 7 FYDFETHTTPVVRGL 21
>gnl|CDD|233971 TIGR02678, TIGR02678, TIGR02678 family protein. Members of this
protein belong to a conserved gene four-gene neighborhood
found sporadically in a phylogenetically broad range of
bacteria: Nocardia farcinica, Symbiobacterium
thermophilum, and Streptomyces avermitilis
(Actinobacteria), Geobacillus kaustophilus (Firmicutes),
Azoarcus sp. EbN1 and Ralstonia solanacearum
(Betaproteobacteria) [Hypothetical proteins, Conserved].
Length = 375
Score = 30.2 bits (68), Expect = 6.6
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 930 TAGLAEFPL-------PDAMLGPTLVCLLGDQFSRLKRGDRFFYEEGGQPSTFTQDQLRE 982
LAE DA L L D+ +R G Y + + L E
Sbjct: 285 ILLLAERLQERSGRWPADADTLGELEAELADERTRHGPGWGKAYRDPSAEAELVTVALSE 344
Query: 983 IRKTSLARVICDNADNIQVMQPLA 1006
+ + LAR D D I ++ A
Sbjct: 345 LLRLGLARRP-DRFDRIWLLPAAA 367
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 29.4 bits (66), Expect = 7.2
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 389 LRPPPPPNVPIPPLTPQQLNQAAMVAIQRIQDRLNLQE 426
+ P P P+ P P T AA A Q+ NL
Sbjct: 128 VPPVPLPDPPAFPSTLPANAAAAAAAQQQRDVPQNLIN 165
>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding. This region
tends to appear at the N-terminus of proteins also
containing DNA-binding HMG (high mobility group) boxes
(pfam00505) and appears to bind the armadillo repeat of
CTNNB1 (beta-catenin), forming a stable complex.
Signaling by Wnt through TCF/LCF is involved in
developmental patterning, induction of neural tissues,
cell fate decisions and stem cell differentiation.
Isoforms of HMG T-cell factors lacking the N-terminal
CTNNB1-binding domain cannot fulfill their role as
transcriptional activators in T-cell differentiation.
Length = 200
Score = 29.5 bits (66), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 382 DSGKSGILRPPPPPNVP-IPPLTPQQLNQ 409
K+GI RPP PP++ PL+P + Q
Sbjct: 165 VDPKTGIPRPPHPPDISPFYPLSPGGVGQ 193
>gnl|CDD|227515 COG5188, PRP9, Splicing factor 3a, subunit 3 [RNA processing and
modification].
Length = 470
Score = 30.0 bits (67), Expect = 7.9
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 884 QHITYNEFLPIILGEYLPQTPKKHFMQHIIARLSRLYESV 923
+Y EFL + E T + + LS L E +
Sbjct: 155 SDCSYLEFLKKL--ERFDLTTEPSKNFRYLEYLSELNEYL 192
>gnl|CDD|99921 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B subfamily
catalytic domain. Bacteria contain five DNA polymerases
(I, II, III, IV and V). DNA polymerase II (Pol II) is a
prototype for the B-family of polymerases. The role of
Pol II in a variety of cellular activities, such as
repair of DNA damaged by UV irradiation or oxidation has
been proved by genetic studies. DNA polymerase III is
the main enzyme responsible for replication of the
bacterial chromosome; however, In vivo studies have also
shown that Pol II is able to participate in chromosomal
DNA replication with larger role in lagging-strand
replication.
Length = 347
Score = 29.8 bits (67), Expect = 8.8
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 292 RFFTREITDRLFQGEGATGFDLFAFNIQRGRDHGLP 327
R F RE L QG+GA DL+ ++R R H LP
Sbjct: 215 REFLREAVRLLLQGDGAGVHDLYEDYLRRLRSHELP 250
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 29.6 bits (66), Expect = 9.9
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 370 DEFQADKSSHNTDSGKSGILRPPPPPNVPIPPLTPQQLN--QAAMVAIQRIQDRLNLQEN 427
D+ Q D + D IL P P + + P P L AA A Q ++ L+
Sbjct: 209 DDEQLDDDGFDLDDALPQILPPAALPPIVVAPAAPAALAAVAAAAPAPQNDEELKQLRGE 268
Query: 428 LVLNRIVL 435
L L R ++
Sbjct: 269 LALMRQMI 276
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 52,494,868
Number of extensions: 5203282
Number of successful extensions: 4101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4047
Number of HSP's successfully gapped: 84
Length of query: 1013
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 906
Effective length of database: 6,191,724
Effective search space: 5609701944
Effective search space used: 5609701944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.6 bits)