RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7312
(1013 letters)
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 253 bits (646), Expect = 2e-73
Identities = 107/321 (33%), Positives = 148/321 (46%), Gaps = 33/321 (10%)
Query: 600 PKITTCVP-FKYRTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVNV----AKFRSVTG 654
+ C YRT G CNN + A G A A R LP +YEDG+ + + ++ G
Sbjct: 10 VPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNG 69
Query: 655 NTLPSARAIST---GFAQDFDVPSENYTLLVMQWGQFLDHDLTHTPISRGQGGSGISCCR 711
+P AR +S G+ + V +N +LL MQWGQ +DHDL P +
Sbjct: 70 FRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQC 129
Query: 712 NGKILEPENLHPDCFPINLPRDDHIFSRFGDTCMEFL----NPRAGFINFGPREQLNQIT 767
E +CFPI P++D G CM F REQ+N +T
Sbjct: 130 E----EYCIQGDNCFPIMFPKNDPKLKTQG-KCMPFFRAGFVCPTPPYQSLAREQINAVT 184
Query: 768 GYLDGSNIYGSSQDSQDFTLDLDFLRLFKGGWLR-----AQNVRGKMFLPANSGE----- 817
+LD S +YGS LR G +LP N+ +
Sbjct: 185 SFLDASLVYGSEPSLASR------LRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCE 238
Query: 818 CTDQASKASCFSAGDGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRR 877
+ ++ CF AGD R +EQI LA H L LREHNR+A L +LNP W+ E L+QE R+
Sbjct: 239 FINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARK 298
Query: 878 IIIAELQHITYNEFLPIILGE 898
I+ A +Q IT+ ++LPI+LG
Sbjct: 299 ILGAFIQIITFRDYLPIVLGS 319
Score = 105 bits (261), Expect = 2e-23
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 909 MQHIIARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEE 968
+ + +L LY++ D++D++ G AE + +GP L CLLG QF +++ GDRF++E
Sbjct: 473 NKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE- 531
Query: 969 GGQPSTFTQDQLREIRKTSLARVICDNADNIQVMQPLAFLKPS 1011
P FT+ Q ++K S +R+ICDN I + AF +
Sbjct: 532 --NPGVFTEKQRDSLQKVSFSRLICDNTH-ITKVPLHAFQANN 571
Score = 91.2 bits (225), Expect = 6e-19
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 242 SLYSGYGKFGNIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQP--VQKADRFFTREIT 299
S + + + F + + K D +RGL + + D+ T E+
Sbjct: 359 SRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELR 418
Query: 300 DRLFQGEGAT-GFDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEPFMDTQC 355
++LFQ GFDL A N+QR RDHG+PGYN WR CG+ + +T L+ + +
Sbjct: 419 NKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKI 475
Score = 54.2 bits (129), Expect = 2e-07
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 139 KESGYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGK---FGNIRENMVMSKQHF 195
K + Y+ ++ I+NVF A+RFGH + + + + F
Sbjct: 323 KWIPPYQGYNNSVDPRISNVFT-FAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFF 381
Query: 196 KPFTLYKQTAFDDFMRGLSGQP--VQKADRFFTRE 228
+ + K D +RGL + + D+ T E
Sbjct: 382 NTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSE 416
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 180 bits (457), Expect = 4e-49
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 29/206 (14%)
Query: 707 ISCCRNGKILEPENLHPDCFPINLPRDDHIFSRFGDTCMEFLNPRAGFI----NFGPREQ 762
++C P CFP+ +P +D C+ F R+ N R Q
Sbjct: 1 VNCE------TSCVQQPPCFPLKIPPNDPRIK-NQADCIPF--FRSCPACPGSNITIRNQ 51
Query: 763 LNQITGYLDGSNIYGSSQDSQDFTLDLDFLRLFKGGWLRAQ-----NVRGKMFLPANSG- 816
+N +T ++D S +YGS + LR G+ LP ++
Sbjct: 52 INALTSFVDASMVYGSEEPLARN------LRNMSNQLGLLAVNQRFQDNGRALLPFDNLH 105
Query: 817 ----ECTDQASKASCFSAGDGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALF 872
T+++++ CF AGD R +E EL ++H L LREHNR+AT L LNP W E L+
Sbjct: 106 DDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLY 165
Query: 873 QETRRIIIAELQHITYNEFLPIILGE 898
QE R+I+ A +Q ITY ++LP++LG
Sbjct: 166 QEARKIVGAMVQIITYRDYLPLVLGP 191
Score = 108 bits (270), Expect = 7e-25
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 887 TYNEFLPIILGEYLPQTPKKHFMQ--------HIIARLSRLYESVDDVDLYTAGLAEFPL 938
YN + + + Q + +L Y + +++D++ G++E
Sbjct: 320 GYNAWR-----RFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLK 374
Query: 939 PDAMLGPTLVCLLGDQFSRLKRGDRFFYEEGGQPSTFTQDQLREIRKTSLARVICDNADN 998
+GP L C++G QF +L+ GDRF++E F+ Q + + + SL R+ICDN
Sbjct: 375 RKGRVGPLLACIIGTQFRKLRDGDRFWWE---NEGVFSMQQRQALAQISLPRIICDNTGI 431
Query: 999 IQVMQPLAFLKPS 1011
V + F+ S
Sbjct: 432 TTVSKNNIFMSNS 444
Score = 92.6 bits (229), Expect = 1e-19
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 243 LYSGYGKFGNIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQ--KADRFFTREITD 300
+ + +S+ F + + + D +RGL P + + ++ EI +
Sbjct: 233 RLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRE 292
Query: 301 RLFQGEGATGFDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEPFMDTQCCIR 358
RLF+ G DL A N+QR RDHGLPGYN WR CG+ + T L + R
Sbjct: 293 RLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLAR 350
Score = 52.5 bits (125), Expect = 4e-07
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 135 ELSPKESGYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFH---GYGKFGNIRENMVMS 191
K R Y+ ++ I NVF A+R+GH+LIQ + + +S
Sbjct: 192 TAMRKYLPTYRSYNDSVDPRIANVFT-NAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLS 250
Query: 192 KQHFKPFTLYKQTAFDDFMRGLSGQPVQ--KADRFFTRE 228
+ F + + + D +RGL P + + ++ E
Sbjct: 251 RVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDE 289
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 180 bits (457), Expect = 4e-48
Identities = 61/318 (19%), Positives = 97/318 (30%), Gaps = 84/318 (26%)
Query: 589 HLLFQILADTCPKITTC-VPFKYRTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVNVA 647
+ + T V + Y++ + N + Y R LPP +D
Sbjct: 83 KYVLTSRSYLIDSPPTYNVHYGYKSWEAFSNL----------SYYTRALPPVADDCP--T 130
Query: 648 KFRSVTGNTLPSARAISTGFAQDFDVPSENYTLLVMQWGQFLDHD--LTHTPISRGQGGS 705
LP ++ + V+ +F+ Q
Sbjct: 131 PMGVKGNKELPDSKEVLE---------------KVLLRREFIPDPQGSNMMFAFFAQ--- 172
Query: 706 GISCCRNGKILEPENLHPDCFPINLPRDDHIFSRFGDTCMEFLNPRAGFINFGPREQLNQ 765
H +F T +
Sbjct: 173 -----------------------------HFTHQFFKTDHKR-----------GPGFTRG 192
Query: 766 ITGYLDGSNIYGSSQDSQDFTLDLDFLRLFKGGWLRAQNVRGKMFLPANSG-----ECTD 820
+ +D ++IYG + D Q RLFK G L+ Q + G+++ P
Sbjct: 193 LGHGVDLNHIYGETLDRQHKL------RLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPP 246
Query: 821 QASKASCFSAGDGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIII 880
+ F+ G L +WLREHNRV IL Q +PEW DE LFQ +R I+I
Sbjct: 247 HIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILI 306
Query: 881 AELQHITYNEFLPIILGE 898
E I +++ + G
Sbjct: 307 GETIKIVIEDYVQHLSGY 324
Score = 75.5 bits (185), Expect = 4e-14
Identities = 11/98 (11%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 252 NIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTREITDRLFQGEGATGF 311
NI + KQ ++ + F+ + Q +
Sbjct: 365 NIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVP----------IAVQ 414
Query: 312 DLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEP 349
+ +I + R+ N++R+ ++ ++ +L
Sbjct: 415 AVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG 452
Score = 46.7 bits (110), Expect = 3e-05
Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 14/139 (10%)
Query: 123 PGGGGRAYTQKFELSPKESGYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFG 182
G + KF+ L++ H L+ F+
Sbjct: 319 QHLSGYHFKLKFDPEL-------LFNQQFQYQNRIASEFNTLYHWHPLLPDTFN------ 365
Query: 183 NIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTREGVKKAIGTYIINSS 242
I + KQ ++ + F+ + Q + +A+ I+ S
Sbjct: 366 -IEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQS 424
Query: 243 LYSGYGKFGNIRENMVMSK 261
Y R+ +
Sbjct: 425 REMKYQSLNEYRKRFSLKP 443
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 177 bits (451), Expect = 2e-47
Identities = 60/295 (20%), Positives = 91/295 (30%), Gaps = 73/295 (24%)
Query: 616 SCNNLENMAWGKAGTAYQRILPPKYEDGVNVAKFRSVTGNTLPSARAISTG-FAQDFDVP 674
++ + + Y RILP D + LP A +S + +P
Sbjct: 101 IAHDYISWESFSNVSYYTRILPSVPRDCPTPM--GTKGKKQLPDAEFLSRRFLLRRKFIP 158
Query: 675 S-ENYTLLVMQWGQFLDHDLTHTPISRGQGGSGISCCRNGKILEPENLHPDCFPINLPRD 733
+ L+ + Q H T P
Sbjct: 159 DPQGTNLMFAFFAQHFTHQFFKT-------------------------SGKMGP------ 187
Query: 734 DHIFSRFGDTCMEFLNPRAGFINFGPREQLNQITGYLDGSNIYGSSQDSQDFTLDLDFLR 793
GF + +D +IYG + + Q LR
Sbjct: 188 -------------------GFTK--------ALGHGVDLGHIYGDNLERQ------YQLR 214
Query: 794 LFKGGWLRAQNVRGKMFLPANSGE-----CTDQASKASCFSAGDGRVNEQIELAAIHMLW 848
LFK G L+ Q + G+++ P+ S + G L +W
Sbjct: 215 LFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIW 274
Query: 849 LREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFLPIILGEYLPQT 903
LREHNRV +L +P W DE LFQ R I+I E I E++ + G +L
Sbjct: 275 LREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLK 329
Score = 130 bits (327), Expect = 1e-31
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 910 QHIIARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEEG 969
+ + A L LY +D ++ Y L E P+++ G +++ + + G+ E
Sbjct: 454 KEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEY 513
Query: 970 GQPSTFT-QDQLREIRKTSLARVICDNADNIQVMQ 1003
+ STF + ++ +L +++C N +
Sbjct: 514 WKASTFGGEVGFNLVKTATLKKLVCLNTKTCPYVS 548
Score = 78.5 bits (193), Expect = 4e-15
Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 17/156 (10%)
Query: 200 LYKQTAFDDFMRGLSGQPVQKADRFFTREGVKKAIGTYIIN--SSLYSGY----GKFGNI 253
+ +++++ LSG +Q G + I + LY + F
Sbjct: 308 ETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVG 367
Query: 254 RENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTREITDRLFQGEGATGFDL 313
++ + F L + + S QP + + +
Sbjct: 368 PQDYSYEQFLFNTSMLVDY-GVEALVDAFSRQPAGRIGGG----------RNIDHHILHV 416
Query: 314 FAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEP 349
I+ R L +N++R+ GM+ ++ +L
Sbjct: 417 AVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG 452
Score = 41.2 bits (96), Expect = 0.002
Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 9/115 (7%)
Query: 147 YDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRENMVMSKQHFKPFTLYKQTAF 206
I F H L+ +F + + +Q ++
Sbjct: 338 AQFQYRNRIAMEFNQ--LYHWHPLMPDSFRVGPQDYSY-------EQFLFNTSMLVDYGV 388
Query: 207 DDFMRGLSGQPVQKADRFFTREGVKKAIGTYIINSSLYSGYGKFGNIRENMVMSK 261
+ + S QP + + + +I S F R+ M
Sbjct: 389 EALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKP 443
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A*
4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Length = 104
Score = 117 bits (294), Expect = 2e-31
Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 609 KYRTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVN----VAKFRSVTGNTLPSARAIS 664
KYRT G CNN + G + A+ R LP +YEDG + G + ARA+S
Sbjct: 6 KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVS 65
Query: 665 T---GFAQDFDVPSENYTLLVMQWGQFLDHDLTHTPIS 699
F D P + +L+ MQWGQ LDHDL TP
Sbjct: 66 NEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEP 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 7e-08
Identities = 100/636 (15%), Positives = 177/636 (27%), Gaps = 245/636 (38%)
Query: 182 GNIRENM-VMSKQHFKPFTLYKQTAFDDFMRGLSG---------QPVQKAD---RFFTRE 228
G++ + V + F L + F + L +P A+ +F
Sbjct: 14 GSLEHVLLVPTASFFIASQLQ-----EQFNKILPEPTEGFAADDEPTTPAELVGKF---- 64
Query: 229 GVKKAIGTYIINSSLYSGYGKFGNIRENMVMSKQHFKPFTLYKQTAFDDFMRG------- 281
+G Y+ + S G+F + + F+ + ++ G
Sbjct: 65 -----LG-YVSSLVEPSKVGQFDQVLNLCL---TEFE----------NCYLEGNDIHALA 105
Query: 282 -----LSGQPVQK--------------ADRFFTREITDRLFQGEGATGFDLFA-FNIQRG 321
+ + K A R F ++ LF+ G L A F Q
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-- 163
Query: 322 RDHGLPGYND--WREVCGMRRARTWNDLEPFMDTQCCIRSNERNITFSKFDEFQADKS-S 378
G D + E +R + + S E + A+K +
Sbjct: 164 ------GNTDDYFEE---LR--DLYQTYHVLVG-DLIKFSAETLSELIR-TTLDAEKVFT 210
Query: 379 HNTDSGKSGILRPPPPPNVP----IP---PL------------------TPQQLNQA--- 410
+ + P P+ IP PL TP +L
Sbjct: 211 QGLNI-LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 411 ---------AMVAIQRIQDRLNLQENL-----VLNRIVLNPDTPAARHQEFFPTTNATLQ 456
VAI + ++ VL I R E +P T+
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-------GVRCYEAYPNTSLPPS 322
Query: 457 TGEKAQKSIEASVGL------VNDQNYLYLVLNRIVLNPDTPAARHQEFFPTTNATLQTG 510
+ S+E + G+ +++ L + + Q++ TN+ L G
Sbjct: 323 I---LEDSLENNEGVPSPMLSISN-------LTQEQV---------QDYVNKTNSHLPAG 363
Query: 511 EKAQKSIEASVGLVN---DFNLT--PEQGTFALPKFSILNTVLADTC--PKITTC-VPFK 562
++ + LVN + ++ P+ +L LN L + +PF
Sbjct: 364 KQ------VEISLVNGAKNLVVSGPPQ----SLYG---LNLTLRKAKAPSGLDQSRIPFS 410
Query: 563 YRTPDGSCNNLENMAWGKAGTLQNKAHLLFQILADTCPKITTCVPF--KYRTP--DGSCN 618
R S L P + PF P D
Sbjct: 411 ERKLKFSNRFL--------------------------P-VA--SPFHSHLLVPASDLINK 441
Query: 619 NLE--NMAWGKAGTAYQRILPPKY--EDGVNVAKFRSVTGNTLPS-ARAISTGFAQDFDV 673
+L N+++ +I P Y DG ++ R ++G+ I
Sbjct: 442 DLVKNNVSFNA---KDIQI--PVYDTFDGSDL---RVLSGSISERIVDCIIR-------- 485
Query: 674 PSENYTLLVMQWGQFLDHDLTHTPISRGQGG-SGIS 708
L ++W TH + G GG SG+
Sbjct: 486 -------LPVKWETTTQFKATHI-LDFGPGGASGLG 513
Score = 54.7 bits (131), Expect = 1e-07
Identities = 96/625 (15%), Positives = 157/625 (25%), Gaps = 237/625 (37%)
Query: 454 TLQTGEKAQKSIEASVGLVNDQNYLYLVLNRIVLNPDTPAARHQEFFPTTNATLQ--TGE 511
TL G S+E + LV ++ A++ QE F N L T
Sbjct: 10 TLSHG-----SLEHVL-LVPTASFFI-------------ASQLQEQF---NKILPEPTEG 47
Query: 512 KAQKSIEASV--------GLVNDFNLTPEQGTF------ALPKF--SIL-----NTVLAD 550
A + G V+ + G F L +F L + + A
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 551 TCPKITTCVPFKYRTPDGSCNNLEN--MAWGKAGTLQNKAH--LLFQILADTCPKITTCV 606
+ T + ++N A A +K LF+ + + ++
Sbjct: 108 LLQENDTTLVKTKEL-------IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI- 159
Query: 607 PFKYRTPDGSCNNLENMAWGKAGT--AY----QRILPPKYED-GVNVAKFRSVTGNTL-- 657
F G G Y + + Y+ V V + TL
Sbjct: 160 -F-----------------GGQGNTDDYFEELRDL----YQTYHVLVGDLIKFSAETLSE 197
Query: 658 --PSARAISTGFAQDFDVPSENYTLLVMQW----GQFLDHD-LTHTPISRGQGGSGISCC 710
+ F Q ++ ++W D D L PIS
Sbjct: 198 LIRTTLDAEKVFTQGLNI---------LEWLENPSNTPDKDYLLSIPIS----------- 237
Query: 711 RNGKILEPENLHPDCFP-INLPRDDHIFSRFGDTCMEF-LNPRAGFINFGPREQLNQITG 768
P I + + + + T P R L TG
Sbjct: 238 ---------------CPLIGVIQ----LAHYVVTAKLLGFTPG----EL--RSYLKGATG 272
Query: 769 YLDG---SNIYGSSQDSQDF-TLDLDFLR-LFKGGWLRAQNVRGKMFLPANSGECTDQAS 823
+ G + + + F + LF G R LP +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV-RCYEAYPNTSLPP--------SI 323
Query: 824 KASCFSAGDGRVNEQIELAAIHMLWLR--EHNRVATILAQLNPEWSDE-----ALFQETR 876
+G ML + +V + + N +L +
Sbjct: 324 LEDSLENNEG--------VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 877 RIIIA----EL-----------------QH-ITYNEFLPIILGEYLPQT-PKKHFMQHII 913
++++ L Q I ++E +LP P F H
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP---F--H-- 428
Query: 914 ARLSRLYESVDDV---DLYTAGLAEFPLPDAMLG-PTLVCLLGDQFSRLKRGDRFFYEEG 969
S L D+ DL + F D + P V Y
Sbjct: 429 ---SHLLVPASDLINKDLVKNNV-SFNAKD--IQIP--V-----------------Y--- 460
Query: 970 GQPSTFTQDQLREIRKTSLARVICD 994
TF LR + S++ I D
Sbjct: 461 ---DTFDGSDLRVL-SGSISERIVD 481
Score = 48.1 bits (114), Expect = 2e-05
Identities = 64/427 (14%), Positives = 122/427 (28%), Gaps = 160/427 (37%)
Query: 644 VNVAKFRSVTGNTLPSARAISTG-FAQDFDVPSENYTLLVMQWGQFLDHDLTHTPISRGQ 702
++ R +T +S G VP+ ++ + QF T
Sbjct: 1 MDAYSTRPLT---------LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT------ 45
Query: 703 GGSGISCCRNGKILEPENLHPDCFPINLPRDDHIFSRFGDTCMEFLNPRAGFINFGPREQ 762
E D P + +F + +++ G +Q
Sbjct: 46 ----------------EGFAADDEPTTPA---ELVGKF----LGYVSSLVEPSKVGQFDQ 82
Query: 763 -----LNQI-TGYLDGSNIY---GSSQDSQDFTLDLDFLRLFKGGWLRAQNVRGKMFLPA 813
L + YL+G++I+ D TL + ++ ++ A
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL------VKTKELIKN-------YITA 129
Query: 814 N--SGECTDQASKASCF-SAGDGRVNEQIELAAIHMLWLREHNRVATILA-QLNPEWSDE 869
+ D+ S ++ F + G+G ++ I Q N +
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNA------------------QLVAIFGGQGNT----D 167
Query: 870 ALFQETRRIIIAELQHITYNEFLPIILGEYLPQTPKKHFMQHIIARLSRLYESVDDVD-L 928
F+ EL+ + Y + ++ ++ LS L + D + +
Sbjct: 168 DYFE--------ELRDL-YQTYHVLV----------GDLIKFSAETLSELIRTTLDAEKV 208
Query: 929 YTAGL---------AEFPLPDAML-----GPTLVCLLGDQFSRLKRGDRFFYEEGGQPST 974
+T GL + P D +L P L+ ++ Q + Y +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCP-LIGVI--QLAH--------YVVTAKLLG 257
Query: 975 FTQDQLREIRKTSL--------ARVIC---------DNADN-IQVM-------Q---PLA 1006
FT +LR K + A I + I V+ P
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 1007 FLKPSIV 1013
L PSI+
Sbjct: 318 SLPPSIL 324
Score = 47.7 bits (113), Expect = 2e-05
Identities = 82/533 (15%), Positives = 144/533 (27%), Gaps = 188/533 (35%)
Query: 1 FTAQRPQFSSEVNVNVDPLPQFTLGQRFNG----------------------ENFNGQFL 38
F P+ + + +P L +F G F +L
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 39 EN--------RLDNRPQQTFQQQ-------VQA-VPDNQQVDGSPNGQLVTPCATRSGEA 82
E +L T + + A + + D N L A G A
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR--AVGEGNA 154
Query: 83 GKCTPLVKCISFYA-------------ELQELQS--QPC--NLNANERGVCCPLRSQPGG 125
A EL++L +L L
Sbjct: 155 ----------QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 126 GGRAYTQKFELSPKESGYTRLYDPDLNAGITNVFASAAYRF-GHSLIQ-GNFHGYGKFGN 183
+ +TQ + L +P + S +IQ ++
Sbjct: 205 AEKVFTQGLNI------LEWLENPSNTPD-KDYLLSIPISCPLIGVIQLAHY-------- 249
Query: 184 IRENMVMSKQH-FKPFTLYKQTAFDDFMRGLSG--QPVQKA---------DRFFTREGVK 231
+V +K F P L +++G +G Q + A + FF V+
Sbjct: 250 ----VVTAKLLGFTPGELR------SYLKGATGHSQGLVTAVAIAETDSWESFF--VSVR 297
Query: 232 KAIGTYIINSSLYSGYGKFGNIRENMVMSKQHFKPFTLYKQTAFDDF----------M-- 279
KAI + G R + + P T + +D M
Sbjct: 298 KAITV-----LFFIGV------R-----CYEAY-PNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 280 -RGLSGQPVQKADRFFTREITDRLFQGEGATGFDLFA--FNIQRGRDH----GLPGYNDW 332
L+ + VQ + + L G+ + N G + G P
Sbjct: 341 ISNLTQEQVQD----YVNKTNSHLPAGK-----QVEISLVN---GAKNLVVSGPP----- 383
Query: 333 REVCGM----RRARTWNDLEPFMDTQCCIRSNERNITFS-KFDE----FQADKSSHNTDS 383
+ + G+ R+A+ + L+ Q I +ER + FS +F F S +
Sbjct: 384 QSLYGLNLTLRKAKAPSGLD-----QSRIPFSERKLKFSNRFLPVASPFH---SHLLVPA 435
Query: 384 GKSGILRPPPPPNVPIPPLTPQQLNQAAMVAIQRIQDRLNLQE--NLVLNRIV 434
I + NV + + + + D +L+ + RIV
Sbjct: 436 -SDLINKDLVKNNVSFN---AKDIQ----IPVYDTFDGSDLRVLSGSISERIV 480
Score = 39.3 bits (91), Expect = 0.009
Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 76/229 (33%)
Query: 541 FSILNTVLADTCPKITTCVPFKYRTPDGSC---NNLENMAWGKAGTLQNKAHLLFQILAD 597
FSIL+ V+ + P T + F + N M + + K +F+ + +
Sbjct: 1659 FSILDIVINN--PVNLT-IHF---GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 598 TCPKITTCVPFKYRTPDGSCNNLEN-----MAWGKAGTAYQRI-----LPPK-------- 639
T +R+ G + + KA A++ + +P
Sbjct: 1713 HSTSYT------FRSEKGLLSATQFTQPALTLMEKA--AFEDLKSKGLIPADATFAGHSL 1764
Query: 640 --Y------------EDGVNVAKFRSVTGNTLPSARAISTGFAQDFDVPSENYTLLVMQW 685
Y E V V +R G T+ A ++ NY ++ +
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYR---GMTMQVA-------VPRDELGRSNYGMIAINP 1814
Query: 686 GQF---LDHDLTHTPISRGQGGSGISCCRNGKILEPENLHPDCFPINLP 731
G+ + + R R G ++E N N+
Sbjct: 1815 GRVAASFSQEALQYVVER-------VGKRTGWLVEIVNY-------NVE 1849
Score = 35.8 bits (82), Expect = 0.092
Identities = 44/293 (15%), Positives = 84/293 (28%), Gaps = 120/293 (40%)
Query: 655 NTLPSARAI----------STGFAQDFDVPSENYTLLVMQWGQFLDHDLTHTPISRGQGG 704
T +A+ + + GF+ D+ N L + +G G+ G
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSI-LDIVINNPVNLTIHFG--------------GEKG 1681
Query: 705 SGISCCRNGKILEPENLHPDCFPINLPRDDHIFSRFGDTCMEF------LNPRAGFINF- 757
I EN IF D ++ +N + F
Sbjct: 1682 KRIR----------ENY-----------SAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 758 GPREQLNQITGYLDGSNIYGSSQDSQD--FTLDLDFLRLFKGGWLRAQNVRGKMFLPANS 815
+ L+ T + +Q ++ L++ +G +PA++
Sbjct: 1721 SEKGLLSA-TQF------------TQPALTLMEKAAFED-----LKS---KG--LIPADA 1757
Query: 816 -------GECTDQASKASCFSAGDGRVNEQIELAAIHMLWLR-----------EHNRVAT 857
GE AS A S IE + + +++ R E R
Sbjct: 1758 TFAGHSLGEYAALASLADVMS---------IE-SLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 858 ILAQLNPEWSDEALFQETRRIIIAELQHIT--------YNEFLP----IILGE 898
+ +NP + QE + ++ + T YN + + G+
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN--VENQQYVAAGD 1858
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 1e-07
Identities = 108/711 (15%), Positives = 193/711 (27%), Gaps = 239/711 (33%)
Query: 262 QHFKP-FTLYKQTAFD-----DFMRGL-----------SGQPVQKADRFFT------REI 298
F+ F FD D + + S V R F E+
Sbjct: 23 SVFEDAFV----DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 299 TDRLFQGEGATGFDLFAFNIQ-RGRDHGLP--GYNDWREVCGMRRARTWNDLEPFMDTQC 355
+ + + I+ R + Y + R+ R +ND + F
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-------RLYNDNQVFAK--- 128
Query: 356 CIRSNERNIT-FSKFDEFQA----DKSSHN------TDSGKS----GILRPPPPPNVPIP 400
N++ + + + + + N SGK+ + + +
Sbjct: 129 ------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-----SYKVQ 177
Query: 401 PLTPQQ---LNQAAMVAIQRIQDRLNLQENLVLNRIVLNPDTPAARHQEFFPTTNATLQT 457
+ LN + + L + + L L +I N ++N L+
Sbjct: 178 CKMDFKIFWLN---LKNCNSPETVLEMLQKL-LYQIDPN------WTSRSDHSSNIKLRI 227
Query: 458 GE-KAQKSIEASVGLVNDQNYL--YLVLNRIVLNPDTPAARHQEF-------FPTTNATL 507
+A+ L+ + Y LVL V N A F T +
Sbjct: 228 HSIQAELRR-----LLKSKPYENCLLVL-LNVQNAKAWNA----FNLSCKILLTTRFKQV 277
Query: 508 QTGEKAQKSIEASVGLVNDFNLTPEQGTFALPKFSILNTVLADTCPKITTCVPFKYRTPD 567
A + S+ + LTP++ L K+ L+ D ++ T P
Sbjct: 278 TDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKY--LDCRPQDLPREVLTTNPR------ 328
Query: 568 GSCNNLENMAWGK----AGTLQNKAHLLFQILADTCPKITTCVPFKYRTPDGSCNNLENM 623
++ T N H+ C K+TT + + S N LE
Sbjct: 329 -----RLSIIAESIRDGLATWDNWKHV-------NCDKLTTII-------ESSLNVLE-- 367
Query: 624 AWGKAGTAYQRILPPKYEDGVNVAKFRSVTGNTLPSARAISTGFAQDFDVPSENYTLLVM 683
A R ++ L ++ F +P+ LL +
Sbjct: 368 ------PAEYR---KMFDR--------------L----SV---FPPSAHIPTI---LLSL 394
Query: 684 QWGQ--------FLDHDLTHTPISRGQGGS-----GISCCRNGKILEPENLH-------- 722
W ++ ++ + + S I K+ LH
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 723 -PDCFPIN----LPRDDHIFSRFGDTCMEFLNPRAGFINFGPREQLNQITGY-LDGSNIY 776
P F + D + +S I G+ L
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYS---------------HI------------GHHLKNIEHP 487
Query: 777 GSSQDSQDFTLDLDFLRLFKGGWLRAQNVRGKMFLPANSGECTD---QASKASCFSAGDG 833
+ LD FL Q +R SG + Q + +
Sbjct: 488 ERMTLFRMVFLDFRFLE---------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 834 RVNEQIELAAIHMLWLREHNRVA---TILAQ--LNPEWSDEALFQETRRII 879
E++ A + L E N + T L + L E DEA+F+E + +
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE--DEAIFEEAHKQV 587
Score = 54.1 bits (129), Expect = 2e-07
Identities = 91/563 (16%), Positives = 151/563 (26%), Gaps = 175/563 (31%)
Query: 567 DGSCNNLENMAWG-----------KAGTLQNKAHLLFQILADTCPKITTCVPFKYRTPDG 615
+ C ++++M + + LF L K V + +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL---LSKQEEMV---QKFVEE 85
Query: 616 SCNNLENMAWGKAGTAYQRILPP----KYEDGVNVAKFRSVTGNTLPSARAISTGFAQDF 671
N + + ++ P Y + R N FA+
Sbjct: 86 VLR--INYKFLMSPIKTEQRQPSMMTRMYIE------QRDRLYNDNQV-------FAKYN 130
Query: 672 DVPS-ENYT-----LLVMQWGQFLDHDLTHTPISRGQGGSGISC-----CRNGKILEPEN 720
V + Y LL ++ + + L G GSG + C + K+
Sbjct: 131 -VSRLQPYLKLRQALLELRPAKNV---LID-----GVLGSGKTWVALDVCLSYKVQ---- 177
Query: 721 LHPDCFPINLPRDDHIF-SRFG-----DTCMEFLNPRAGFINFGPREQLNQITGYLDGSN 774
IF +T +E L + N + SN
Sbjct: 178 ---CKMD------FKIFWLNLKNCNSPETVLEMLQ------KLLYQIDPNWTSRSDHSSN 222
Query: 775 IYGSSQDSQDFTLDLDFLRLFKGGWLRAQNVRGKMFLPANSGEC-----TDQASKASCFS 829
I Q L + ++ L NV+ A + C T S
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 830 AGDGRVNEQIELAAIHMLWLREHNRVATILAQ-LNPEWSDEALFQETRRI------IIAE 882
A ++ H + V ++L + L+ D L +E IIAE
Sbjct: 283 A-----ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLSIIAE 335
Query: 883 L-----------QHITYNEFLPIILG--EYL-PQTPKKHFMQ--------HI-IARLSRL 919
+H+ ++ II L P +K F + HI LS +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 920 -----YESVDDV--DLYTAGLAE-------FPLPD------------AMLGPTLV----- 948
V V L+ L E +P L ++V
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 949 --CLLGDQFSRLKRGDRFFY----------EEGGQPSTFTQDQL------REIRKTSLAR 990
D D++FY E + + F L ++IR S A
Sbjct: 456 PKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 991 VICDNADNIQVMQPLAFLKPSIV 1013
+ + +Q L F KP I
Sbjct: 515 --NASGSILNTLQQLKFYKPYIC 535
Score = 41.4 bits (96), Expect = 0.002
Identities = 79/613 (12%), Positives = 150/613 (24%), Gaps = 210/613 (34%)
Query: 26 QRFNGE--NFNGQFLENRLDNRPQQTFQQQVQAVPDNQQVDGSPN-GQLVTPCATRSGEA 82
Q+F E N +FL + + +Q + +Q D N Q+ +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQ- 135
Query: 83 GKCTPLVKCISFYAELQELQSQPCNLNANERGVCCPLRSQPGGGGRAYTQKFELSPKESG 142
L + L EL+ N+ + G G SG
Sbjct: 136 -PYLKLRQA------LLELRPAK-NV-----LID-------GVLG-------------SG 162
Query: 143 YTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGY-GKFGNIRE-NMVMSKQHFKPFTL 200
T A + +F + N V+ L
Sbjct: 163 KT-------------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----KL 205
Query: 201 YKQTAFDDFMRGLSGQPV--------QKADRFFTREGVKKAIGTYIINSSLYSGYGKFGN 252
Q + R + + R + + ++
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLV------------- 249
Query: 253 IRENMVMSKQHFKPF---------TLYKQTAFDDFMRGLSGQ--PVQKADRFFTREITDR 301
+ V + + + F T +KQ DF+ + + T +
Sbjct: 250 LLN--VQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 302 LFQGEGATGFDLFAFNIQRGRDHGLPGYNDWREVCG------------MR-RARTWN--- 345
L L + R LP REV +R TW+
Sbjct: 306 LL---------LKYLDC---RPQDLP-----REVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 346 --DLEPFMDT-QCCIRSNERNITFSKFDEFQADKSSHNTDSGKSGILRPPPPPNVPIPPL 402
+ + + + E FD + PP+ IP +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRL--------------SVF----PPSAHIPTI 390
Query: 403 T----------------PQQLNQAAMVAIQR---------IQDRLNLQ--ENLVLNRIVL 435
+L++ ++V Q I L ++ L+R ++
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 436 NP-DTPAARHQEFFPTTNAT----------LQTGEKAQKSIEASVGLVNDQNYLYLVLNR 484
+ + P + L+ E ++ + ++L
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--------VFLDFRF 502
Query: 485 IV--LNPDTPAARHQEFFPTTNATLQTGEKAQKSI-------EASVGLVNDFNLTPEQGT 535
+ + D+ A + TLQ + + I E V + DF E+
Sbjct: 503 LEQKIRHDSTAWNAS---GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 536 FALPKFSILNTVL 548
+L L
Sbjct: 560 ICSKYTDLLRIAL 572
Score = 29.8 bits (66), Expect = 6.3
Identities = 29/174 (16%), Positives = 51/174 (29%), Gaps = 55/174 (31%)
Query: 880 IAELQHITYNEFLPIILG------------EYLPQTPKKHFMQHIIA---RLSRLY---- 920
E Q+ Y + L + + K + HII +S
Sbjct: 11 TGEHQY-QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 921 --------------ESVDDVDLYTAGLAEFPLPDAMLGPTLVCLL-GDQFSRLKRGDRFF 965
E V ++ Y L P+ P+++ + +Q RL ++ F
Sbjct: 70 TLLSKQEEMVQKFVEEVLRIN-YKF-LMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 966 YEEG---GQPSTFTQDQLREIR--------------KTSLARVICDNADNIQVM 1002
+ QP + L E+R KT +A +C + M
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
>2ikd_A Prophenoloxidase activating proteinase-2; beta-sheet, double helix,
hydrolase; NMR {Manduca sexta}
Length = 66
Score = 41.5 bits (97), Expect = 5e-05
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 10/61 (16%)
Query: 68 NGQLVTPCATRSGEAGKCTPLVKCISFYAELQE----------LQSQPCNLNANERGVCC 117
+ + C + + G C L++C + + L+ C + VCC
Sbjct: 6 HHAMGQACTLPNNDKGTCKSLLQCDVASKIISKKPRTAQDEKFLRESACGFDGQTPKVCC 65
Query: 118 P 118
P
Sbjct: 66 P 66
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.006
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 26/53 (49%)
Query: 459 EKAQ-KSIEASVGLVNDQNYLYLVLNRIVLNPDT-PA-ARHQEFFPTTNATLQ 508
EK K ++AS+ L Y D+ PA A AT++
Sbjct: 18 EKQALKKLQASLKL-----Y----------ADDSAPALA--------IKATME 47
Score = 35.7 bits (81), Expect = 0.024
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 20/45 (44%)
Query: 414 AIQRIQDRLNLQENLVLNRIVLNPDT-PA-ARHQEFFPTTNATLQ 456
A++++Q L L D+ PA A AT++
Sbjct: 21 ALKKLQASLKLYA----------DDSAPALA--------IKATME 47
Score = 33.4 bits (75), Expect = 0.17
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 132 QKFELSPKESGYTRLYDPD------LNAGI 155
+K L ++ +LY D + A +
Sbjct: 18 EKQALKKLQASL-KLYADDSAPALAIKATM 46
Score = 32.2 bits (72), Expect = 0.38
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 10/38 (26%)
Query: 511 EKAQ-KSIEASVGLVNDFNLTPEQGTFALPKFSILNTV 547
EK K ++AS+ L + P +I T+
Sbjct: 18 EKQALKKLQASLKL-----YADDSA----PALAIKATM 46
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 34.5 bits (79), Expect = 0.17
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 1/93 (1%)
Query: 66 SPNGQLVTPCATRSGEAGKCTPLVKCISFYAELQELQSQPCNLNANERGVCCPLR-SQPG 124
S C T G+ G+C P C + L E Q + A+ +
Sbjct: 23 SARADYADDCTTPDGDQGQCMPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFN 82
Query: 125 GGGRAYTQKFELSPKESGYTRLYDPDLNAGITN 157
G + + D + + G
Sbjct: 83 GVRHFCCPSANIQHNSKVMSLFKDENFDCGNFL 115
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, subtilisin, tubulin;
HET: GTP GDP MES; 2.64A {Artificial gene}
Length = 87
Score = 28.8 bits (64), Expect = 2.0
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 388 ILRPPPPPNVPIPPLTPQQLNQAAMVAIQR----IQDRLNLQENLVLNRI 433
IL+PP VP + + ++ IQ+ ++R +L R+
Sbjct: 20 ILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKAHFAAMLERL 69
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease,
hydrolase, magnesium, metal nonsense-mediated mRNA
decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Length = 507
Score = 29.2 bits (64), Expect = 7.5
Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 5/185 (2%)
Query: 585 QNKAHLLFQILADTCPKITTCVPFKYRTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGV 644
+ A +F L DT + + PFK + S LE + ++ +
Sbjct: 307 KEMAICVFPRLLDT-KLMASTQPFKDIINNTSLAELEK-RLKETPFDPPKVESAEGFPSY 364
Query: 645 NVAKFRSVTGNTLPSARAIS-TGFAQDFDVPSENYTLLVMQWGQFLDHDLTHTPISRGQG 703
+ A + + A + V + ++ + R
Sbjct: 365 DTASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVSARSKLIEPFFNKLFLMRVMD 424
Query: 704 GSGISCCRNGKILEPENLHPDCFPINLPRDD--HIFSRFGDTCMEFLNPRAGFINFGPRE 761
++ + +++ FP D +FS FG+ + +++ + F++ E
Sbjct: 425 IPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPE 484
Query: 762 QLNQI 766
Q+
Sbjct: 485 QVQIA 489
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,727,461
Number of extensions: 974126
Number of successful extensions: 1898
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1862
Number of HSP's successfully gapped: 42
Length of query: 1013
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 910
Effective length of database: 3,825,930
Effective search space: 3481596300
Effective search space used: 3481596300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)