RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7312
(1013 letters)
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 280 bits (717), Expect = 7e-84
Identities = 103/308 (33%), Positives = 146/308 (47%), Gaps = 38/308 (12%)
Query: 609 KYRTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVN----VAKFRSVTGNTLPSARAIS 664
KYRT G CNN + G + A+ R LP +YEDG + G + ARA+S
Sbjct: 6 KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVS 65
Query: 665 T---GFAQDFDVPSENYTLLVMQWGQFLDHDLTHTPISRGQGGSGISCCRNGKILEPENL 721
F D P + +L+ MQWGQ LDHDL TP ++C +
Sbjct: 66 NEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTP------EPAVNCETSCVQ------ 113
Query: 722 HPDCFPINLPRDDHIFSRFGDTCMEFLN--PRAGFINFGPREQLNQITGYLDGSNIYGSS 779
P CFP+ +P +D C+ F P N R Q+N +T ++D S +YGS
Sbjct: 114 QPPCFPLKIPPNDPRIKN-QADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSE 172
Query: 780 QDSQDFTLDLDFLRLFKGGWLRAQ-----NVRGKMFLPANSGE-----CTDQASKASCFS 829
+ LR G+ LP ++ T+++++ CF
Sbjct: 173 EPLARN------LRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFL 226
Query: 830 AGDGRVNEQIELAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYN 889
AGD R +E EL ++H L LREHNR+AT L LNP W E L+QE R+I+ A +Q ITY
Sbjct: 227 AGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYR 286
Query: 890 EFLPIILG 897
++LP++LG
Sbjct: 287 DYLPLVLG 294
Score = 142 bits (359), Expect = 5e-36
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 912 IIARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEEGGQ 971
+ +L Y + +++D++ G++E +GP L C++G QF +L+ GDRF++E
Sbjct: 452 LARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWE---N 508
Query: 972 PSTFTQDQLREIRKTSLARVICDNADNIQVMQPLAFLKPS 1011
F+ Q + + + SL R+ICDN V + F+ S
Sbjct: 509 EGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNS 548
Score = 93.6 bits (232), Expect = 3e-20
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 238 IINSSLYSGYGKFGNIREN--MVMSKQHFKPFTLYKQTAFDDFMRGLSGQP--VQKADRF 293
+I ++ ++ + N + +S+ F + + + D +RGL P + + ++
Sbjct: 330 LIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQI 389
Query: 294 FTREITDRLFQGEGATGFDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEPFM 351
EI +RLF+ G DL A N+QR RDHGLPGYN WR CG+ + T L +
Sbjct: 390 AVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL 447
Score = 56.3 bits (135), Expect = 1e-08
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 134 FELSPKESGYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRE---NMVM 190
K R Y+ ++ I NVF A+R+GH+LIQ E + +
Sbjct: 295 PTAMRKYLPTYRSYNDSVDPRIANVFT-NAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPL 353
Query: 191 SKQHFKPFTLYKQTAFDDFMRGLSGQP--VQKADRFFTRE 228
S+ F + + + D +RGL P + + ++ E
Sbjct: 354 SRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDE 393
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 194 bits (493), Expect = 1e-53
Identities = 61/301 (20%), Positives = 91/301 (30%), Gaps = 83/301 (27%)
Query: 608 FKYRTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVNVAKFRSVTGNTLPSARAISTG- 666
Y + + N + Y RILP D + LP A +S
Sbjct: 61 HDYISWESFSNV----------SYYTRILPSVPRDCP--TPMGTKGKKQLPDAEFLSRRF 108
Query: 667 FAQDFDVPS-ENYTLLVMQWGQFLDHDLTHTPISRGQGGSGISCCRNGKILEPENLHPDC 725
+ +P + L+ + Q H T
Sbjct: 109 LLRRKFIPDPQGTNLMFAFFAQHFTHQFFKTS---------------------------- 140
Query: 726 FPINLPRDDHIFSRFGDTCMEFLNPRAGFINFGPREQLNQITGYLDGSNIYGSSQDSQDF 785
G F + +D +IYG + + Q
Sbjct: 141 ---------------GKMGPGF---------------TKALGHGVDLGHIYGDNLERQ-- 168
Query: 786 TLDLDFLRLFKGGWLRAQNVRGKMFLPANSGECTDQA-----SKASCFSAGDGRVNEQIE 840
LRLFK G L+ Q + G+++ P+ S + G
Sbjct: 169 ----YQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPG 224
Query: 841 LAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFLPIILGEYL 900
L +WLREHNRV +L +P W DE LFQ R I+I E I E++ + G +L
Sbjct: 225 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 284
Query: 901 P 901
Sbjct: 285 Q 285
Score = 69.2 bits (169), Expect = 1e-12
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 252 NIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTREITDRLFQGEGATGF 311
+ +Q ++ + + S QP + +
Sbjct: 323 RVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRI----------GGGRNIDHHIL 372
Query: 312 DLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEP 349
+ I+ R L +N++R+ GM+ ++ +L
Sbjct: 373 HVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG 410
Score = 44.6 bits (105), Expect = 5e-05
Identities = 12/116 (10%), Positives = 27/116 (23%), Gaps = 7/116 (6%)
Query: 146 LYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRENMVMSKQHFKPFTLYKQTA 205
L+ H L+ +F + + + ++
Sbjct: 293 LFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDYSYEQ-------FLFNTSMLVDYG 345
Query: 206 FDDFMRGLSGQPVQKADRFFTREGVKKAIGTYIINSSLYSGYGKFGNIRENMVMSK 261
+ + S QP + + + +I S F R+ M
Sbjct: 346 VEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKP 401
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 189 bits (482), Expect = 3e-52
Identities = 61/359 (16%), Positives = 109/359 (30%), Gaps = 96/359 (26%)
Query: 608 FKYRTPDGSCNNLENMAWGKAGTAYQRILPPKYEDGVNVAKFRSVTGNTLPSARAISTGF 667
+ Y++ + N + Y R LPP +D LP ++ +
Sbjct: 62 YGYKSWEAFSNL----------SYYTRALPPVADDCPTPM--GVKGNKELPDSKEVLEKV 109
Query: 668 --AQDFDVPSENYTLLVMQWGQFLDHDLTHTPISRGQGGSGISCCRNGKILEPENLHPDC 725
++F + ++ + Q T R
Sbjct: 110 LLRREFIPDPQGSNMMFAFFAQHFTAQFFKTDHKR------------------------- 144
Query: 726 FPINLPRDDHIFSRFGDTCMEFLNPRAGFINFGPREQLNQITGYLDGSNIYGSSQDSQDF 785
F + +D ++IYG + D Q
Sbjct: 145 ------------------GPGFTR---------------GLGHGVDLNHIYGETLDRQ-- 169
Query: 786 TLDLDFLRLFKGGWLRAQNVRGKMFLPANSGECTD-----QASKASCFSAGDGRVNEQIE 840
LRLFK G L+ Q + G+++ P + + F+ G
Sbjct: 170 ----HKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPG 225
Query: 841 LAAIHMLWLREHNRVATILAQLNPEWSDEALFQETRRIIIAELQHITYNEFLPIILGE-- 898
L +WLREH RV IL Q +PEW DE LFQ ++ I+I E I +++ + G
Sbjct: 226 LMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSGYHF 285
Query: 899 ---------YLPQTPKKHFMQHIIARLSRLYESVDDVDLYTAGLAEFPLPDAMLGPTLV 948
+ Q ++ + L + + D E+ + +++
Sbjct: 286 KLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQ--EYSFKQFLYNNSIL 342
Score = 138 bits (349), Expect = 5e-35
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 882 ELQHITYNEFLPIILGEYLPQTPKKHFMQ-----HIIARLSRLYESVDDVDLYTAGLAEF 936
E+++ + NE+ + P F + + A L LY +D ++LY A L E
Sbjct: 385 EMKYQSLNEYR-----KRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEK 439
Query: 937 PLPDAMLGPTLVCLLGDQFSRLKRGDRFFYEEGGQPSTFT-QDQLREIRKTSLARVICDN 995
P PDA+ G T+V L + G+ + +PSTF + + I S+ +IC+N
Sbjct: 440 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLICNN 499
Query: 996 ADNI 999
Sbjct: 500 VKGC 503
Score = 75.7 bits (186), Expect = 1e-14
Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 25/161 (15%)
Query: 199 TLYKQTAFDDFMRGLSGQPVQKADRFFTREGVKKAIGTYIINSS----LYSGY----GKF 250
+ +D+++ LSG + +F + +S LY + F
Sbjct: 266 GETIKIVIEDYVQHLSGYHFK--LKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTF 323
Query: 251 GNIRENMVMSKQHFKPFTLYKQTAFDDFMRGLSGQPVQKADRFFTREITDRLFQGEG--A 308
NI + KQ ++ + F+ FTR+I R+ G
Sbjct: 324 -NIEDQEYSFKQFLYNNSILLEHGLTQFVES------------FTRQIAGRVAGGRNVPI 370
Query: 309 TGFDLFAFNIQRGRDHGLPGYNDWREVCGMRRARTWNDLEP 349
+ +I + R+ N++R+ ++ ++ +L
Sbjct: 371 AVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG 411
Score = 55.7 bits (134), Expect = 2e-08
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 8/134 (5%)
Query: 142 GYTRLYDPDLNAGITNVFASAAYRFGHSLIQGNFHGYGKFGNIRENMVMSKQHFKPFTLY 201
L++ H L+ F NI + KQ ++
Sbjct: 290 DPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTF-------NIEDQEYSFKQFLYNNSIL 342
Query: 202 KQTAFDDFMRGLSGQPVQKADRFFTREGVKKAIGTYIINSSLYSGYGKFGNIRENMVMSK 261
+ F+ + Q + +A+ I+ S Y R+ +
Sbjct: 343 LEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKP 402
Query: 262 -QHFKPFTLYKQTA 274
F+ T K+ A
Sbjct: 403 YTSFEELTGEKEMA 416
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.9 bits (67), Expect = 0.84
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 382 DSGKSG-----ILRPPPPPNVPIPPLTPQQLNQAAMVAIQRIQDRLNLQE 426
+ SG IL+PP VP + + ++ + IQ +L E
Sbjct: 9 NKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAE 55
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 27.9 bits (62), Expect = 2.6
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 382 DSGKSGILRPPPPPNVPIPPLTPQQLNQAAMVAIQRIQDRLNLQENLV 429
SG P PP P ++ ++ I +++ E V
Sbjct: 5 SSGAPAEPAAPKSGEAETPPKHP------GVLKVEAILEKVQGLEQAV 46
>d1jy1a2 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesterase TDP1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 27.9 bits (62), Expect = 5.8
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 619 NLENMAWGKAGTAYQRILPPKYEDGV-------NVAKFRSVTGNTLPSARAISTGFAQDF 671
NL AWG +++ YE GV + F+ V ++ F +
Sbjct: 166 NLSKAAWGALEKNGTQLMIRSYELGVLFLPSALGLDSFK-VKQKFFAGSQEPMATFPVPY 224
Query: 672 DVPSENYT 679
D+P E Y
Sbjct: 225 DLPPELYG 232
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,846,133
Number of extensions: 188544
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 19
Length of query: 1013
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 919
Effective length of database: 1,116,976
Effective search space: 1026500944
Effective search space used: 1026500944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)