BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7317
(919 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HGC|A Chain A, Crystal Structure Of A Functional Acid Sensing Ion Channel
In The Desensitized State
pdb|3IJ4|A Chain A, Cesium Sites In The Crystal Structure Of A Functional Acid
Sensing Ion Channel In The Desensitized State
Length = 465
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 798 PGFDSLNIKHSLNCSRCAPTCYNTEYDLEIS-----------YVPDARNKTWLYSGH--- 843
P D L K + C C C T Y E+S Y+ NK+ Y G
Sbjct: 346 PALDFLVEKDNEYCV-CEMPCNVTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENIL 404
Query: 844 -LDIFYGNLGARRYLRDITFTSSDLLVFIGGVANLFLGFSLLSVVEFI 890
LDIF+ L + + + LL IGG LF+G S+L+V+E
Sbjct: 405 VLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASILTVLELF 452
>pdb|4FZ0|A Chain A, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At Low Ph
pdb|4FZ0|B Chain B, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At Low Ph
pdb|4FZ0|C Chain C, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At Low Ph
pdb|4FZ1|A Chain A, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At High Ph
Length = 450
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 798 PGFDSLNIKHSLNCSRCAPTCYNTEYDLEIS-----------YVPDARNKTWLYSGH--- 843
P D L K + C C C T Y E+S Y+ NK+ Y G
Sbjct: 334 PALDFLVEKDNEYCV-CEMPCNVTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENIL 392
Query: 844 -LDIFYGNLGARRYLRDITFTSSDLLVFIGGVANLFLGFSLLSVVEFI 890
LDIF+ L + + + LL IGG LF+G S+L+V+E
Sbjct: 393 VLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASILTVLELF 440
>pdb|2QTS|A Chain A, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|B Chain B, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|C Chain C, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|D Chain D, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|E Chain E, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|F Chain F, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
Length = 438
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 798 PGFDSLNIKHSLNCSRCAPTCYNTEYDLEIS-----------YVPDARNKTWLYSGH--- 843
P D L K + C C C T Y E+S Y+ NK+ Y G
Sbjct: 322 PALDFLVEKDNEYCV-CEMPCNVTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENIL 380
Query: 844 -LDIFYGNLGARRYLRDITFTSSDLLVFIGGVANLFLGFSLLSVVEFI 890
LDIF+ L + + + LL IGG LF+G S+L+V+E
Sbjct: 381 VLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASILTVLELF 428
>pdb|3S3W|A Chain A, Structure Of Chicken Acid-Sensing Ion Channel 1 At 2.6 A
Resolution And Ph 7.5
pdb|3S3W|B Chain B, Structure Of Chicken Acid-Sensing Ion Channel 1 At 2.6 A
Resolution And Ph 7.5
pdb|3S3W|C Chain C, Structure Of Chicken Acid-Sensing Ion Channel 1 At 2.6 A
Resolution And Ph 7.5
pdb|3S3X|A Chain A, Structure Of Chicken Acid-Sensing Ion Channel 1 At 3.0 A
Resolution In Complex With Psalmotoxin
pdb|3S3X|B Chain B, Structure Of Chicken Acid-Sensing Ion Channel 1 At 3.0 A
Resolution In Complex With Psalmotoxin
pdb|3S3X|C Chain C, Structure Of Chicken Acid-Sensing Ion Channel 1 At 3.0 A
Resolution In Complex With Psalmotoxin
Length = 459
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 798 PGFDSLNIKHSLNCSRCAPTCYNTEYDLEIS-----------YVPDARNKTWLYSGH--- 843
P D L K + C C C T Y E+S Y+ NK+ Y G
Sbjct: 343 PALDFLVEKDNEYCV-CEMPCNVTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENIL 401
Query: 844 -LDIFYGNLGARRYLRDITFTSSDLLVFIGGVANLFLGFSLLSVVEFI 890
LDIF+ L + + + LL IGG LF+G S+L+V+E
Sbjct: 402 VLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASILTVLELF 449
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.128 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,947,919
Number of Sequences: 62578
Number of extensions: 1064432
Number of successful extensions: 1358
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 4
length of query: 919
length of database: 14,973,337
effective HSP length: 108
effective length of query: 811
effective length of database: 8,214,913
effective search space: 6662294443
effective search space used: 6662294443
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)