Query psy7317
Match_columns 919
No_of_seqs 187 out of 724
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 23:42:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00859 ENaC sodium channel 100.0 2.5E-33 5.3E-38 313.3 18.4 187 713-905 265-532 (595)
2 TIGR00867 deg-1 degenerin. Thi 100.0 2.3E-30 4.9E-35 290.5 13.8 170 716-892 352-601 (601)
3 PF00858 ASC: Amiloride-sensit 100.0 3.4E-30 7.3E-35 264.5 7.8 173 715-893 192-439 (439)
4 KOG4294|consensus 100.0 5.7E-28 1.2E-32 258.8 15.2 195 706-905 217-487 (520)
5 PF00858 ASC: Amiloride-sensit 98.6 2E-08 4.4E-13 104.4 4.2 112 46-194 122-236 (439)
6 KOG4294|consensus 98.1 1.8E-06 3.9E-11 94.1 4.7 111 46-194 160-270 (520)
7 TIGR00859 ENaC sodium channel 97.5 9.4E-05 2E-09 85.0 5.0 84 91-194 224-309 (595)
8 TIGR00867 deg-1 degenerin. Thi 96.5 0.0018 3.8E-08 75.2 3.7 82 91-192 308-390 (601)
9 PF04491 Pox_T4_N: Poxvirus T4 36.3 30 0.00066 29.5 2.3 13 743-755 33-45 (46)
10 COG1357 Pentapeptide repeats c 31.9 2.7E+02 0.0059 27.6 8.6 7 366-372 194-200 (238)
11 COG1357 Pentapeptide repeats c 27.8 3.1E+02 0.0068 27.2 8.3 6 346-351 195-200 (238)
No 1
>TIGR00859 ENaC sodium channel transporter. This model is designed from the vertebrate members of the ENaC family.
Probab=100.00 E-value=2.5e-33 Score=313.30 Aligned_cols=187 Identities=24% Similarity=0.291 Sum_probs=151.3
Q ss_pred cCCCCCCcccCccceEEEEeCCCcccCCCCCCCCceEEEeeCCCCCCCCCCCcceeCCCCCccccc------------cc
Q psy7317 713 SRETEGIEQRDLNGAKVSEYNSRETEGIEQRDLNGAKIMVHTSYEYPDAGDGVWLPSTHGKKLSIA------------VF 780 (919)
Q Consensus 713 s~stpGi~~RdlNGLSLILNIEQEEY~~sSsssAGFKVLIHdP~EfPdmsd~gfIPsP~GRsVSIS------------kR 780 (919)
+...+|+. +||+|+|+++++||.+.....+||||+||+|.|+|++...++ .+|+|..+.++ .|
T Consensus 265 ~~~~~G~~----~GL~LvL~i~q~ey~p~~~~~aGfkV~IH~p~e~P~~~~~G~-~V~PG~~T~I~i~~~~~~~L~~p~~ 339 (595)
T TIGR00859 265 TSSMPGAE----NGLKLVLDIEQDEYLPLLSTEAGARVMVHSQDEPPFIDDLGF-GVRPGTETSISMQEDELQRLGGPYG 339 (595)
T ss_pred eecCCCcc----CceEEEEecchhhccccccCCCceEEEEeCCCCCCcccccce-ecCCCcEEEEEEEhhhhhhcCCCCC
Confidence 34566666 799999999999998877779999999999999999996653 34444332222 12
Q ss_pred c----------------------c----------CCCCcccccCC-CCCCCCcccccc---------------cccc--c
Q psy7317 781 S----------------------C----------PSRRHLRLLRP-PDGTPGFDSLNI---------------KHSL--N 810 (919)
Q Consensus 781 Q----------------------C----------ldCGCLPFFyP-p~nvPvCdCLk~---------------K~sl--~ 810 (919)
+ | ..|+|++|+|| +.+++.|+-.+. .... .
T Consensus 340 ~C~~~~~~l~~~~~y~~~YS~~nC~~eC~~~~~~~~CgC~~~~mP~~~~~~~C~~~~~~~c~~c~~~~~~~~~~~~~~c~ 419 (595)
T TIGR00859 340 DCTENGSDVPVENLYNSSYSIQACLRSCFQRYMVENCGCAYYHYPLPGGAEYCNYEQHPDWAYCYYKLYAEFDQEELGCF 419 (595)
T ss_pred CCcCCCCCCccccccCcccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCCcCCccccccHHHHHHHHHHHhhhhccccc
Confidence 2 4 28999999999 456678863321 0112 4
Q ss_pred ccccccCccceEEEEEEEeecCCCc-------------------cCccceEEEEEEEcccceEEEEEeeccchhHHHHhh
Q psy7317 811 CSRCAPTCYNTEYDLEISYVPDARN-------------------KTWLYSGHLDIFYGNLGARRYLRDITFTSSDLLVFI 871 (919)
Q Consensus 811 C~dCpPpC~dtsYdVEISySkfPSs-------------------~~rnNLAvLnIYFkELnYerYrRSpaYg~tDLLSNI 871 (919)
| .|+|+|+.+.|.+++|++.||+. ..+.|+++|+|||++++|+.++|+++|+|.+|||+|
T Consensus 420 C-~C~~~C~~~~Y~~~iS~a~~ps~~~~~~l~~~~~~~~~~~~~~~r~n~~~l~Iyf~el~y~~i~q~~~y~~~~LLsdi 498 (595)
T TIGR00859 420 S-VCREPCNFTEYKLTLSMARWPSAASEDWLLHVLSRQNEYNITLIRNGIAKLNIFFEELNYRTIEESPAYNVVTLLSNL 498 (595)
T ss_pred C-CCCCCcCceeeeeEEEeccCcchhhHHHHHHhhccchhhhhhhcccceEEEEEEeecceeEEEEEecccCHHHHHHHH
Confidence 8 89999999999999999999853 135789999999999999999999999999999999
Q ss_pred cccchhccccchhHHHHHHHHHHHHHHHHHhHhh
Q psy7317 872 GGVANLFLGFSLLSVVEFIYWFLKIAIILGYRAY 905 (919)
Q Consensus 872 GGILGLFLGASLLSIVEIIYFLtiRL~~~c~RR~ 905 (919)
||+||||||+|+||++||+|||+..++..+.+++
T Consensus 499 GG~lGLfmG~SvLSi~Eii~~l~~~~~~~~~~~~ 532 (595)
T TIGR00859 499 GGQMGLWMGASVLCVLELLELIIDLIFITLLRLL 532 (595)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988876665433
No 2
>TIGR00867 deg-1 degenerin. This model is designed from the invertebrate members of the ENaC family.
Probab=99.97 E-value=2.3e-30 Score=290.54 Aligned_cols=170 Identities=21% Similarity=0.328 Sum_probs=136.7
Q ss_pred CCCCcccCccceEEEEeCCCcccCCCCCCCCceEEEeeCCCCCCCCCCCcceeCCCCCcccc------------------
Q psy7317 716 TEGIEQRDLNGAKVSEYNSRETEGIEQRDLNGAKIMVHTSYEYPDAGDGVWLPSTHGKKLSI------------------ 777 (919)
Q Consensus 716 tpGi~~RdlNGLSLILNIEQEEY~~sSsssAGFKVLIHdP~EfPdmsd~gfIPsP~GRsVSI------------------ 777 (919)
.+|.. +||+|+|++++++|++. ...+||||+||+|.|+|+++..++ .+|+|...++
T Consensus 352 ~~G~~----~GL~LvLni~q~EY~p~-~~~aGfKVlIH~p~E~P~pd~~G~-~v~pG~~T~I~I~~~~~~~Lp~pyg~C~ 425 (601)
T TIGR00867 352 RAGPM----YGLRLLLFVNQSDYLPT-TEAAGVRLTVHDKDEFPFPDTFGY-SAPTGFISSFGIKLKQMVRLPAPYGDCV 425 (601)
T ss_pred cCccC----CceEEEEecchhhccCC-CCCCcEEEEEeCCCCCccccccce-ecCCCcEEEEEEeeeeeeecCCCCCCcC
Confidence 45655 79999999999999864 567999999999999999997653 3333322111
Q ss_pred ---------------ccccc----------CCCCcccccCC-CCCCCCcc--------ccccc--------c-ccccccc
Q psy7317 778 ---------------AVFSC----------PSRRHLRLLRP-PDGTPGFD--------SLNIK--------H-SLNCSRC 814 (919)
Q Consensus 778 ---------------SkRQC----------ldCGCLPFFyP-p~nvPvCd--------CLk~K--------~-sl~C~dC 814 (919)
++..| ..|+|.+++|| +.+++.|+ |+... . ...| +|
T Consensus 426 ~~~e~~~~~y~~~~YS~~nC~~EC~~~~vlk~CGC~~~~~P~~~~~~~C~~~~~~~~~Cl~~~~~~~~~~~~~~~~C-~C 504 (601)
T TIGR00867 426 DTGKTSDYIYKGYAYSPEGCHRSCFQKLIIAKCGCGDPRFPVPEGSRHCQAFNKTDRECLENLTGDLGELHHKIFKC-RC 504 (601)
T ss_pred CCCccccccCCCCcCCHHHHHHHHHHHHHHhcCCCCCcCCcCCCCCCcCCCCccchhhHHHHHHHHhhhhhccCCCC-CC
Confidence 11223 28999999998 44556775 54321 1 1579 99
Q ss_pred ccCccceEEEEEEEeecCCCcc-------------------CccceEEEEEEEcccceEEEEEeeccchhHHHHhhcccc
Q psy7317 815 APTCYNTEYDLEISYVPDARNK-------------------TWLYSGHLDIFYGNLGARRYLRDITFTSSDLLVFIGGVA 875 (919)
Q Consensus 815 pPpC~dtsYdVEISySkfPSs~-------------------~rnNLAvLnIYFkELnYerYrRSpaYg~tDLLSNIGGIL 875 (919)
+|||..+.|.+++|++.||+.. .+.|+++|+|||++++|+.++|.++|+|.+|||+|||+|
T Consensus 505 ~~pC~~~~Y~~~iS~a~~ps~s~~~~l~~~~~~~~~~~~~~~r~N~~~l~Vyyeel~y~~i~q~~~y~~~~LLSdiGG~l 584 (601)
T TIGR00867 505 KQPCQESIYTVTYSAAKWPSGSLYIDLGSCDLNTASECNEYYRENAAMIEVFYEQLNYELLTESEAYGLVNLLADFGGQL 584 (601)
T ss_pred CCCccccEEeeEeecccCcchhhhhhhhcccccccchhhhhhccceEEEEEEeccceeEEEEeecccCHHHHHHHhhhHH
Confidence 9999999999999999997431 257889999999999999999999999999999999999
Q ss_pred hhccccchhHHHHHHHH
Q psy7317 876 NLFLGFSLLSVVEFIYW 892 (919)
Q Consensus 876 GLFLGASLLSIVEIIYF 892 (919)
|||||+||||++||+++
T Consensus 585 GLflG~SVLSl~Eil~l 601 (601)
T TIGR00867 585 GLWLGASVITVCEFVCL 601 (601)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999874
No 3
>PF00858 ASC: Amiloride-sensitive sodium channel; InterPro: IPR001873 The apical membrane of many tight epithelia contains sodium channels that are primarily characterised by their high affinity to the diuretic blocker amiloride [, , , ]. These channels mediate the first step of active sodium reabsorption essential for the maintenance of body salt and water homeostasis []. In vertebrates, the channels control reabsorption of sodium in kidney, colon, lung and sweat glands; they also play a role in taste perception. Members of the epithelial Na+ channel (ENaC) family fall into four subfamilies, termed alpha, beta, gamma and delta []. The proteins exhibit the same apparent topology, each with two transmembrane (TM) spanning segments, separated by a large extracellular loop. In most ENaC proteins studied to date, the extracellular domains are highly conserved and contain numerous cysteine residues, with flanking C-terminal amphipathic TM regions, postulated to contribute to the formation of the hydrophilic pores of the oligomeric channel protein complexes. It is thought that the well-conserved extracellular domains serve as receptors to control the activities of the channels. Vertebrate ENaC proteins are similar to degenerins of Caenorhabditis elegans []: deg-1, del-1, mec-4, mec-10 and unc-8. These proteins can be mutated to cause neuronal degradation, and are also thought to form sodium channels. Structurally, the proteins that belong to this family consist of about 510 to 920 amino acid residues. They are made of an intracellular N terminus region followed by a transmembrane domain, a large extracellular loop, a second transmembrane segment and a C-terminal intracellular tail [].; GO: 0005272 sodium channel activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 2QTS_B 3S3W_C 3IJ4_A 3S3X_A 3HGC_A 2K2B_A.
Probab=99.96 E-value=3.4e-30 Score=264.48 Aligned_cols=173 Identities=28% Similarity=0.459 Sum_probs=120.2
Q ss_pred CCCCCcccCccceEEEEeCCCcccCCCC--CCCCceEEEeeCCCCCCCCCCCcceeCCCCCc------------cccccc
Q psy7317 715 ETEGIEQRDLNGAKVSEYNSRETEGIEQ--RDLNGAKIMVHTSYEYPDAGDGVWLPSTHGKK------------LSIAVF 780 (919)
Q Consensus 715 stpGi~~RdlNGLSLILNIEQEEY~~sS--sssAGFKVLIHdP~EfPdmsd~gfIPsP~GRs------------VSISkR 780 (919)
..+|.. +||+|+|++++++|.... ...+||+|+||+|.++|++...+ +.+++|.. ++...|
T Consensus 192 ~~~g~~----~gL~l~l~~~~~~~~~~~~~~~~~G~~v~ih~~~~~p~~~~~~-~~v~~g~~~~i~v~~~~~~~l~~~~r 266 (439)
T PF00858_consen 192 SRSGPG----NGLSLVLNVNQDDYLYDPGTTSSAGFKVYIHDPGEYPFIESNG-ISVPPGSETSISVKPTRISRLPPPYR 266 (439)
T ss_dssp -SSSGG----GSEEEEEE--GGGS----S--TSBSEEEEEE-TTS---HHHH--EEE-TTEEEEEEEEEEEEE---TTTS
T ss_pred eccCcc----cccceeecccceeeecccccccchhheeecCCcccccchhccc-cccccceEEEEEeeccchhccCCCCC
Confidence 345555 799999999999998433 33369999999999999998543 23333321 111224
Q ss_pred cc------------------------------CCCCcccccCCCCCCCCcc------cccc----------ccccccccc
Q psy7317 781 SC------------------------------PSRRHLRLLRPPDGTPGFD------SLNI----------KHSLNCSRC 814 (919)
Q Consensus 781 QC------------------------------ldCGCLPFFyPp~nvPvCd------CLk~----------K~sl~C~dC 814 (919)
+| ..|+|.|++++..+.+.|+ |+.. .....| +|
T Consensus 267 ~C~~~~e~~l~~~~~~Ys~~~C~~~C~~~~~~~~C~C~~~~~~~~~~~~C~~~~~~~Cl~~~~~~~~~~~~~~~~~C-~C 345 (439)
T PF00858_consen 267 QCYFDDENNLYYFNSIYSYSNCLLECRQKYILKKCGCVPPFYPNNNVPYCTLSDLLECLQKNYDKFNSSWEEDGNSC-DC 345 (439)
T ss_dssp SEB-SSSSBSSSS--S--HHHHHHHHHHHHHHHHHSSB-TTS--SSS-B--HHHHHHTHHHHHHHHH---HT-SSSS---
T ss_pred CCcCCccccccccccccChHHHHHHHHHHHHHHhCCCCCccccccCCCcCCchhhhhHHHHHHHHhhhcccccccCC-CC
Confidence 44 1899999999666778886 7653 136799 99
Q ss_pred ccCccceEEEEEEEeecCCCcc---------------CccceEEEEEEEcccceEEEEEeeccchhHHHHhhcccchhcc
Q psy7317 815 APTCYNTEYDLEISYVPDARNK---------------TWLYSGHLDIFYGNLGARRYLRDITFTSSDLLVFIGGVANLFL 879 (919)
Q Consensus 815 pPpC~dtsYdVEISySkfPSs~---------------~rnNLAvLnIYFkELnYerYrRSpaYg~tDLLSNIGGILGLFL 879 (919)
+|+|.++.|.++++++.|+... ..+|.+.|+|||.+++++.++|.+.|+|.+||++|||++||||
T Consensus 346 ~~~C~~~~Y~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~ll~~iGG~~gLfl 425 (439)
T PF00858_consen 346 LPPCNETSYSVSVSYSSLPSKSFQKWLSNSFNKSEDYIRDNLAVLNIYFKELPYERYRRSPAYTWSDLLSDIGGILGLFL 425 (439)
T ss_dssp -EBSEEEEEEEEEEEEESS-CCCHHHHHHHTT--HHHHHHHEEEEEEEEEEEEEEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred CCchhhhcccccccccccccccchhhhhccccccccccccchhhHHhhhccceEEEEEEecccchhhHHHHhhhHHHHHH
Confidence 9999999999999999998763 1468999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHH
Q psy7317 880 GFSLLSVVEFIYWF 893 (919)
Q Consensus 880 GASLLSIVEIIYFL 893 (919)
|+|+||++||+|||
T Consensus 426 G~S~is~~E~i~~~ 439 (439)
T PF00858_consen 426 GASVISLVEIIYFF 439 (439)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHeeeC
Confidence 99999999999996
No 4
>KOG4294|consensus
Probab=99.95 E-value=5.7e-28 Score=258.82 Aligned_cols=195 Identities=25% Similarity=0.421 Sum_probs=153.9
Q ss_pred CcccccccCCCCCCcccCccceEEEEeCCCcccCCCCCCC--CceEEEeeCCCCCCCCCCCcc-----------------
Q psy7317 706 AKVSEYNSRETEGIEQRDLNGAKVSEYNSRETEGIEQRDL--NGAKIMVHTSYEYPDAGDGVW----------------- 766 (919)
Q Consensus 706 ~k~~eY~s~stpGi~~RdlNGLSLILNIEQEEY~~sSsss--AGFKVLIHdP~EfPdmsd~gf----------------- 766 (919)
......+....+|+. +||.++|+++|++|.+.++.. +||+|+||.|.++|++.+.++
T Consensus 217 ~~~~~~~~~~~~g~~----~GL~~~l~~~~~~~~p~~~~~~~~g~~v~ih~~~~~p~~~~~~~~~~~~~~s~~~i~~~~~ 292 (520)
T KOG4294|consen 217 SNKEGKYTSSRAGTG----YGLRVMLDVNQEEYLPGWTESDEAGVRVFIHSPDELPFIDSTGYSVPPGSESSVAVSPTKL 292 (520)
T ss_pred cCccccccccCCccc----CceEEEEEccccccCCCccccccCceEEEeeCCCCCCCCCCcceecCCCceEEEEEeeeee
Confidence 334445666777773 799999999999999865544 999999999999999996553
Q ss_pred --eeCC-CCCc------c---------ccc--cccc------CCCCcccccCC-CCCCCCcc-----ccccc--------
Q psy7317 767 --LPST-HGKK------L---------SIA--VFSC------PSRRHLRLLRP-PDGTPGFD-----SLNIK-------- 806 (919)
Q Consensus 767 --IPsP-~GRs------V---------SIS--kRQC------ldCGCLPFFyP-p~nvPvCd-----CLk~K-------- 806 (919)
+|.| +|.- . +.. .+.| ..|+|.++++| +.+.++|+ |+...
T Consensus 293 ~~l~~~~~g~C~~~~~~~~~~~~~~~Ys~~~C~~~C~~~~~~~~C~C~~~~~~~~~~~~~C~~~~~~C~~~~~~~~~~~~ 372 (520)
T KOG4294|consen 293 TRLPPPKWGNCLFSGEEVPELYYGRIYSLENCLLECRQKYLVKKCGCVPPLYPLPGNVPYCTLEDLLCLDLFLDSVGSKS 372 (520)
T ss_pred eecCCCCCccccCCCCCCcccccCCCcCHHHHHHHHHHHHHHhcCCCCCccccCCCCCCcCCcchhhhhhhHHHhhcCcC
Confidence 2222 2210 0 111 2455 39999999988 55678886 66541
Q ss_pred ccccccccccCccceEEEEEEEeecCCCcc-----------------CccceEEEEEEEcccceEEEEEeeccchhHHHH
Q psy7317 807 HSLNCSRCAPTCYNTEYDLEISYVPDARNK-----------------TWLYSGHLDIFYGNLGARRYLRDITFTSSDLLV 869 (919)
Q Consensus 807 ~sl~C~dCpPpC~dtsYdVEISySkfPSs~-----------------~rnNLAvLnIYFkELnYerYrRSpaYg~tDLLS 869 (919)
....| .|+++|..+.|.++.|++.||+.. .+.|.++|+|||++++|+.++++++|+|.+||+
T Consensus 373 ~~~~c-~C~~~C~~~~y~~~~s~~~~ps~~~~~~~~~~~~~~~~~~~~~~n~~~v~i~~~~l~y~~~~~~~~~~~~~Lls 451 (520)
T KOG4294|consen 373 LNISC-VCPPPCNSTRYSVTLSMAKWPSFSSAVWLGLKPDKNSCEKYIRENRAMVNIFYEELNYESYEQSKAYGFSDLLS 451 (520)
T ss_pred CCCCC-CCCCCcccceeeeEeecccccccchhhhhhccCChHHHHHHHHhCceEEEEEhhhcCceeeehhhhccHHHHHH
Confidence 12229 999999999999999999998431 257899999999999999999999999999999
Q ss_pred hhcccchhccccchhHHHHHHHHHHHHHHHHHhHhh
Q psy7317 870 FIGGVANLFLGFSLLSVVEFIYWFLKIAIILGYRAY 905 (919)
Q Consensus 870 NIGGILGLFLGASLLSIVEIIYFLtiRL~~~c~RR~ 905 (919)
++||++|||||+|+||++||++|++..++..+.++.
T Consensus 452 ~~GG~~GLf~G~Sv~t~~Ei~~~~~~~~~~~~~~~~ 487 (520)
T KOG4294|consen 452 DIGGQLGLFLGASVLTILEIIYYFFEVIWIALRKRR 487 (520)
T ss_pred HhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999998887775533
No 5
>PF00858 ASC: Amiloride-sensitive sodium channel; InterPro: IPR001873 The apical membrane of many tight epithelia contains sodium channels that are primarily characterised by their high affinity to the diuretic blocker amiloride [, , , ]. These channels mediate the first step of active sodium reabsorption essential for the maintenance of body salt and water homeostasis []. In vertebrates, the channels control reabsorption of sodium in kidney, colon, lung and sweat glands; they also play a role in taste perception. Members of the epithelial Na+ channel (ENaC) family fall into four subfamilies, termed alpha, beta, gamma and delta []. The proteins exhibit the same apparent topology, each with two transmembrane (TM) spanning segments, separated by a large extracellular loop. In most ENaC proteins studied to date, the extracellular domains are highly conserved and contain numerous cysteine residues, with flanking C-terminal amphipathic TM regions, postulated to contribute to the formation of the hydrophilic pores of the oligomeric channel protein complexes. It is thought that the well-conserved extracellular domains serve as receptors to control the activities of the channels. Vertebrate ENaC proteins are similar to degenerins of Caenorhabditis elegans []: deg-1, del-1, mec-4, mec-10 and unc-8. These proteins can be mutated to cause neuronal degradation, and are also thought to form sodium channels. Structurally, the proteins that belong to this family consist of about 510 to 920 amino acid residues. They are made of an intracellular N terminus region followed by a transmembrane domain, a large extracellular loop, a second transmembrane segment and a C-terminal intracellular tail [].; GO: 0005272 sodium channel activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 2QTS_B 3S3W_C 3IJ4_A 3S3X_A 3HGC_A 2K2B_A.
Probab=98.63 E-value=2e-08 Score=104.41 Aligned_cols=112 Identities=23% Similarity=0.345 Sum_probs=68.8
Q ss_pred cccCccccccHHHHHHHHhccccccCCCCCCCccccCCCCCccceeEEeeeEeeccccccCCCCccC-cccceeecccee
Q psy7317 46 QVLPLLSQVNISDFMLHIMVHTSYEYPDAGDGVWLPSTHGKKLSIAVFSSITMTSDSVKRLGPRERG-CCEIFSLQKTEE 124 (919)
Q Consensus 46 ~~l~~l~~vNitd~~l~~m~~c~~~~~~~~~g~w~~~~~~~~~~i~~F~~C~WR~~~v~~~~~~~~n-CCeiF~lqkTe~ 124 (919)
.++..++..++.+++..+..+|+ ++|..|+|++.+. + ||++|....|+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~c~----------------------d~i~~C~~~~~~~--------~~c~~~~~~~~t~~ 171 (439)
T PF00858_consen 122 ENLDELDNFNLDEFLNNLGHSCE----------------------DLILSCSWNGKPC--------DCCEDFFRFVHTEY 171 (439)
T ss_dssp T--TT-----HHHHHHHHS--HH----------------------HHEEEEEETTEE-----------GGGEEEE-EETT
T ss_pred HHHhhhhhhhHHHHHhhccccHH----------------------HHHHHHhhcCCcc--------ccHHHhhhcccccC
Confidence 45666669999999999999998 4779999997744 7 777999999999
Q ss_pred eeEEEeeccccCcCCcCcccCCCCCCCCCcceeeecccCCCCC--CCCCCcccccCCCccccccccccccCc
Q psy7317 125 GYCYSFNSLTSEEGKHWRESNPRPNKADALPTKLTRARSPLIP--RETEGIEQRDLNGAKVSEYNSRETEGI 194 (919)
Q Consensus 125 G~CyvFNS~~S~~~~~w~~s~~~~g~~sgL~vkl~R~~~~li~--~~~~gi~~~~~~~~~~~~~~~~~~~~~ 194 (919)
|.||+||+... ..+.+|+++..+|...||.+.|+..+....+ ..+. ..|.+|.-....+...+
T Consensus 172 G~C~tfn~~~~-~~~~~~~~~~~~g~~~gL~l~l~~~~~~~~~~~~~~~------~~G~~v~ih~~~~~p~~ 236 (439)
T PF00858_consen 172 GNCYTFNSLNS-DNNSYPLRQSRSGPGNGLSLVLNVNQDDYLYDPGTTS------SAGFKVYIHDPGEYPFI 236 (439)
T ss_dssp EEEEEET-SS---SSSS--EE-SSSGGGSEEEEEE--GGGS----S--T------SBSEEEEEE-TTS---H
T ss_pred ceeeeccCccc-ccccceeeeeccCcccccceeecccceeeeccccccc------chhheeecCCcccccch
Confidence 99999999987 4578999999999999999999997776662 2221 14666665555544433
No 6
>KOG4294|consensus
Probab=98.15 E-value=1.8e-06 Score=94.13 Aligned_cols=111 Identities=24% Similarity=0.384 Sum_probs=83.4
Q ss_pred cccCccccccHHHHHHHHhccccccCCCCCCCccccCCCCCccceeEEeeeEeeccccccCCCCccCcccceeeccceee
Q psy7317 46 QVLPLLSQVNISDFMLHIMVHTSYEYPDAGDGVWLPSTHGKKLSIAVFSSITMTSDSVKRLGPRERGCCEIFSLQKTEEG 125 (919)
Q Consensus 46 ~~l~~l~~vNitd~~l~~m~~c~~~~~~~~~g~w~~~~~~~~~~i~~F~~C~WR~~~v~~~~~~~~nCCeiF~lqkTe~G 125 (919)
..+-.+...++..++..+.-.|. ++|..|.|++. +++||++|....|++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~C~f~g~--------~~~~~~~~~~~~t~~G 209 (520)
T KOG4294|consen 160 ETLIFLPNFNVEEFLMSLSYSCD----------------------DLILSCSFNGK--------PCDCCKFFTPIFTEYG 209 (520)
T ss_pred HhhccccccCcHHHHHHhCCCHH----------------------HHHHhCCcCCe--------eCCchhcceeccCCCc
Confidence 34444445577788888888888 47889999966 4489999999999999
Q ss_pred eEEEeeccccCcCCcCcccCCCCCCCCCcceeeecccCCCCCCCCCCcccccCCCccccccccccccCc
Q psy7317 126 YCYSFNSLTSEEGKHWRESNPRPNKADALPTKLTRARSPLIPRETEGIEQRDLNGAKVSEYNSRETEGI 194 (919)
Q Consensus 126 ~CyvFNS~~S~~~~~w~~s~~~~g~~sgL~vkl~R~~~~li~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 194 (919)
.||.||+ ..+.+.|...++|...||.+.|...+....|..+... .+|++|.-....+...+
T Consensus 210 ~C~tfN~----~~~~~~~~~~~~g~~~GL~~~l~~~~~~~~p~~~~~~----~~g~~v~ih~~~~~p~~ 270 (520)
T KOG4294|consen 210 NCYTFNS----SNKEGKYTSSRAGTGYGLRVMLDVNQEEYLPGWTESD----EAGVRVFIHSPDELPFI 270 (520)
T ss_pred ceeEecC----cCccccccccCCcccCceEEEEEccccccCCCccccc----cCceEEEeeCCCCCCCC
Confidence 9999999 3466677777777799999999999998888522222 67777765555444433
No 7
>TIGR00859 ENaC sodium channel transporter. This model is designed from the vertebrate members of the ENaC family.
Probab=97.50 E-value=9.4e-05 Score=85.00 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=62.3
Q ss_pred eEEeeeEeeccccccCCCCccCccc-ceeeccc-eeeeEEEeeccccCcCCcCcccCCCCCCCCCcceeeecccCCCCCC
Q psy7317 91 AVFSSITMTSDSVKRLGPRERGCCE-IFSLQKT-EEGYCYSFNSLTSEEGKHWRESNPRPNKADALPTKLTRARSPLIPR 168 (919)
Q Consensus 91 ~~F~~C~WR~~~v~~~~~~~~nCCe-iF~lqkT-e~G~CyvFNS~~S~~~~~w~~s~~~~g~~sgL~vkl~R~~~~li~~ 168 (919)
++|.+|+|++. .|.. -|..-.| .+|.||.||+.... -.|++..+|...||.+.|+-.+...+|.
T Consensus 224 dmi~~C~f~g~----------~C~~~nFt~~~T~~yG~CyTFN~~~~~----~~~~~~~~G~~~GL~LvL~i~q~ey~p~ 289 (595)
T TIGR00859 224 DFILTCRFDGE----------SCDARNFTHFHHPMYGNCYTFNSGENS----NLLTSSMPGAENGLKLVLDIEQDEYLPL 289 (595)
T ss_pred HheeeeeECCe----------ECCcccCeEEEcCCCccEEeccCCCCC----CcceecCCCccCceEEEEecchhhcccc
Confidence 47789999966 3543 5888889 99999999997632 2477888999999999999988876654
Q ss_pred CCCCcccccCCCccccccccccccCc
Q psy7317 169 ETEGIEQRDLNGAKVSEYNSRETEGI 194 (919)
Q Consensus 169 ~~~gi~~~~~~~~~~~~~~~~~~~~~ 194 (919)
-. ...|+||.-....|..-+
T Consensus 290 ~~------~~aGfkV~IH~p~e~P~~ 309 (595)
T TIGR00859 290 LS------TEAGARVMVHSQDEPPFI 309 (595)
T ss_pred cc------CCCceEEEEeCCCCCCcc
Confidence 32 247777766666555443
No 8
>TIGR00867 deg-1 degenerin. This model is designed from the invertebrate members of the ENaC family.
Probab=96.53 E-value=0.0018 Score=75.21 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=60.9
Q ss_pred eEEeeeEeeccccccCCCCccCcccceee-ccceeeeEEEeeccccCcCCcCcccCCCCCCCCCcceeeecccCCCCCCC
Q psy7317 91 AVFSSITMTSDSVKRLGPRERGCCEIFSL-QKTEEGYCYSFNSLTSEEGKHWRESNPRPNKADALPTKLTRARSPLIPRE 169 (919)
Q Consensus 91 ~~F~~C~WR~~~v~~~~~~~~nCCeiF~l-qkTe~G~CyvFNS~~S~~~~~w~~s~~~~g~~sgL~vkl~R~~~~li~~~ 169 (919)
++|..|+|++.+ .+|...|.. ..|.+|.||.||+..+ ..+++.+.|...||-+-|+-.+....|..
T Consensus 308 Dmi~~C~f~G~~--------C~c~~nFt~~~~~~yGnCyTFN~~~~-----~~l~~~~~G~~~GL~LvLni~q~EY~p~~ 374 (601)
T TIGR00867 308 ELILKCSFNGKP--------CDIDRDFTLHIDPTFGNCYTFNYNRS-----VNLTSSRAGPMYGLRLLLFVNQSDYLPTT 374 (601)
T ss_pred HhhhcceECCeE--------CCCcccCcEEecCCCCCeEEECCCCC-----CcceeccCccCCceEEEEecchhhccCCC
Confidence 367899999764 478888986 4577999999997543 33566678999999999998887766531
Q ss_pred CCCcccccCCCcccccccccccc
Q psy7317 170 TEGIEQRDLNGAKVSEYNSRETE 192 (919)
Q Consensus 170 ~~gi~~~~~~~~~~~~~~~~~~~ 192 (919)
...|.||.-.+..|..
T Consensus 375 -------~~aGfKVlIH~p~E~P 390 (601)
T TIGR00867 375 -------EAAGVRLTVHDKDEFP 390 (601)
T ss_pred -------CCCcEEEEEeCCCCCc
Confidence 3378888777666644
No 9
>PF04491 Pox_T4_N: Poxvirus T4 protein, N terminus; InterPro: IPR007580 Poxvirus T4 protein is thought to be secreted or retained in the endoplasmic reticulum if the protein also contains an additional C-terminal region (IPR007579 from INTERPRO). M-T4 of myxoma virus (O55698 from SWISSPROT) is thought to protect infected lymphocytes from apoptosis and modulate the inflammatory response to virus infection [].
Probab=36.27 E-value=30 Score=29.48 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=10.8
Q ss_pred CCCCceEEEeeCC
Q psy7317 743 RDLNGAKIMVHTS 755 (919)
Q Consensus 743 sssAGFKVLIHdP 755 (919)
+...||||++|+.
T Consensus 33 tegNGfki~~hD~ 45 (46)
T PF04491_consen 33 TEGNGFKIFAHDE 45 (46)
T ss_pred eeCCcEEEEEecc
Confidence 3579999999985
No 10
>COG1357 Pentapeptide repeats containing protein [Function unknown]
Probab=31.93 E-value=2.7e+02 Score=27.60 Aligned_cols=7 Identities=43% Similarity=0.876 Sum_probs=2.6
Q ss_pred cCCCccc
Q psy7317 366 DLNGAKV 372 (919)
Q Consensus 366 ~~~~~~~ 372 (919)
+|.|+++
T Consensus 194 ~l~ga~l 200 (238)
T COG1357 194 NLSGADL 200 (238)
T ss_pred cccCCcc
Confidence 3333333
No 11
>COG1357 Pentapeptide repeats containing protein [Function unknown]
Probab=27.84 E-value=3.1e+02 Score=27.16 Aligned_cols=6 Identities=50% Similarity=0.899 Sum_probs=2.2
Q ss_pred CCCccc
Q psy7317 346 LNGAKV 351 (919)
Q Consensus 346 ~~~~~~ 351 (919)
|.|+++
T Consensus 195 l~ga~l 200 (238)
T COG1357 195 LSGADL 200 (238)
T ss_pred ccCCcc
Confidence 333333
Done!