Query psy7317
Match_columns 919
No_of_seqs 187 out of 724
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 23:42:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qts_A Acid-sensing ION channe 100.0 2.6E-33 9E-38 292.9 12.5 178 714-898 185-436 (438)
2 2qts_A Acid-sensing ION channe 98.6 1.9E-08 6.6E-13 105.7 5.5 106 53-193 127-233 (438)
3 2kih_A Matrix protein 2; S31N, 21.9 24 0.00083 28.3 0.6 31 877-907 9-40 (43)
4 2xty_A QNRB1; cell cycle, pent 21.6 5.2E+02 0.018 24.4 11.0 11 406-416 191-201 (217)
5 2xty_A QNRB1; cell cycle, pent 21.6 5.2E+02 0.018 24.4 11.0 13 426-438 190-202 (217)
6 3nb2_A Secreted effector prote 12.2 4E+02 0.014 31.0 7.5 32 342-373 142-173 (613)
7 3nb2_A Secreted effector prote 12.1 4E+02 0.014 30.9 7.5 32 363-394 142-173 (613)
8 3pss_A QNR; pentapeptide repea 9.7 1E+03 0.035 22.0 10.3 13 364-376 190-202 (216)
9 3du1_X ALL3740 protein, HETL; 7.8 1.3E+03 0.046 21.9 15.8 9 428-436 243-251 (257)
10 3du1_X ALL3740 protein, HETL; 7.8 1.3E+03 0.046 21.9 15.8 9 449-457 243-251 (257)
No 1
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=100.00 E-value=2.6e-33 Score=292.93 Aligned_cols=178 Identities=21% Similarity=0.241 Sum_probs=145.2
Q ss_pred CCCCCCcccCccceEEEEeCCCcccCCCCCC------CCceEEEeeCCCCCCCCCCCcceeCCCCCcc------------
Q psy7317 714 RETEGIEQRDLNGAKVSEYNSRETEGIEQRD------LNGAKIMVHTSYEYPDAGDGVWLPSTHGKKL------------ 775 (919)
Q Consensus 714 ~stpGi~~RdlNGLSLILNIEQEEY~~sSss------sAGFKVLIHdP~EfPdmsd~gfIPsP~GRsV------------ 775 (919)
...+|+. +||+|+|++++++|.+.... .+||||+||+|.|+|++...+ +.+|+|..+
T Consensus 185 ~~~~G~~----~GL~l~L~~~~~~y~~~~~~~~~~~~~~G~~v~iH~~~e~P~~~~~g-~~v~~g~~t~v~v~~~~~~~l 259 (438)
T 2qts_A 185 TMKGGTG----NGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLG-FGVAPGFQTFVSCQEQRLIYL 259 (438)
T ss_dssp ECSSSGG----GSEEEEEECCGGGCCCCCSCCTTCCSCBSEEEEEECTTSCCCHHHHC-EEECTTEEEEEEEEEEEEECC
T ss_pred ecCCccC----CCceEEEEcccccccccccccccccccCceEEEECCCCCCCcccccc-eecCCCCEEEEEEEEEEeecc
Confidence 4556666 79999999999999876543 399999999999999998544 344445322
Q ss_pred ccccccc----------------------------CCCCcccccCCCCCCCCcc------cccc-------ccccccccc
Q psy7317 776 SIAVFSC----------------------------PSRRHLRLLRPPDGTPGFD------SLNI-------KHSLNCSRC 814 (919)
Q Consensus 776 SISkRQC----------------------------ldCGCLPFFyPp~nvPvCd------CLk~-------K~sl~C~dC 814 (919)
+...|+| ..|+|+||++|. +.++|+ |+.. .....| +|
T Consensus 260 ~~~~r~C~~~~~~l~~~~~Ys~~~C~~eC~~~~~~~~CgC~~~~~P~-~~~~C~~~~~~~C~~~~~~~~~~~~~~~C-~C 337 (438)
T 2qts_A 260 PPPWGDCKATTGDSEFYDTYSITACRIDCETRYLVENCNCRMVHMPG-DAPYCTPEQYKECADPALDFLVEKDNEYC-VC 337 (438)
T ss_dssp CTTTCCCBCCCSCCSSCSSCCHHHHHHHHHHHHHHHHHSSBCTTCCS-SSCBCCHHHHHHTHHHHHHHHHHTCSSSS-CC
T ss_pred CCCcCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHhcCCCEeeCCCC-CCCCCChHHHHHHHHHHHHHHhcCCCCCC-CC
Confidence 2223566 179999999997 678887 6643 235679 89
Q ss_pred ccCccceEEEEEEEeecCCCccC---------------ccceEEEEEEEcccceEEEEEeeccchhHHHHhhcccchhcc
Q psy7317 815 APTCYNTEYDLEISYVPDARNKT---------------WLYSGHLDIFYGNLGARRYLRDITFTSSDLLVFIGGVANLFL 879 (919)
Q Consensus 815 pPpC~dtsYdVEISySkfPSs~~---------------rnNLAvLnIYFkELnYerYrRSpaYg~tDLLSNIGGILGLFL 879 (919)
+|+|+++.|.+++|+++||+... ++|+++|+|||++++|+.++|++.|+|.+|||+|||+|||||
T Consensus 338 ~~~C~~~~Y~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~i~f~~~~~~~~~~~~~~~~~~lls~~GG~~GLfl 417 (438)
T 2qts_A 338 EMPCNVTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENILVLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFI 417 (438)
T ss_dssp CCBSEEEEEEEEEEEEESSCTTTHHHHHHHHTCCHHHHHHHEEEEEEEEEEEEEEEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCcccceeeeeEEEEeeCCchHHHHHHHHhcCcchhhHhhcEEEEEEEEecceeEEEEEecccCHHHHHHHHHhHHHHHh
Confidence 99999999999999999987521 267899999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHH
Q psy7317 880 GFSLLSVVEFIYWFLKIAI 898 (919)
Q Consensus 880 GASLLSIVEIIYFLtiRL~ 898 (919)
|+|+||++||+||++.+++
T Consensus 418 G~S~ls~~Ei~~~~~~~~~ 436 (438)
T 2qts_A 418 GASILTVLELFDYAYEVIK 436 (438)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cchHHHHHHHHHHHHHHHc
Confidence 9999999999999987654
No 2
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=98.63 E-value=1.9e-08 Score=105.74 Aligned_cols=106 Identities=21% Similarity=0.200 Sum_probs=79.2
Q ss_pred cccHHHHHHHHhccccccCCCCCCCccccCCCCCccceeEEeeeEeeccccccCCCCccCcc-cceeeccceeeeEEEee
Q psy7317 53 QVNISDFMLHIMVHTSYEYPDAGDGVWLPSTHGKKLSIAVFSSITMTSDSVKRLGPRERGCC-EIFSLQKTEEGYCYSFN 131 (919)
Q Consensus 53 ~vNitd~~l~~m~~c~~~~~~~~~g~w~~~~~~~~~~i~~F~~C~WR~~~v~~~~~~~~nCC-eiF~lqkTe~G~CyvFN 131 (919)
.+++.+++..+..+|+ ++|..|.|++. +|| ++|....|++|.||+||
T Consensus 127 ~~~~~~~~~~~~~~~~----------------------d~~~~C~~~~~----------~C~~~~F~~~~T~~G~CytFN 174 (438)
T 2qts_A 127 PFNMLEFYDRAGHDIR----------------------EMLLSCFFRGE----------QCSPEDFKVVFTRYGKCYTFN 174 (438)
T ss_dssp CCCHHHHHHHHSCCHH----------------------HHEEEEEETTE----------ECCGGGEEEEEETTEEEEEET
T ss_pred CccHHHHHHHccCChh----------------------hheeEeecCCe----------ECcchhcccccccCcceeecC
Confidence 4589999999999999 36789999965 686 89999999999999999
Q ss_pred ccccCcCCcCcccCCCCCCCCCcceeeecccCCCCCCCCCCcccccCCCccccccccccccC
Q psy7317 132 SLTSEEGKHWRESNPRPNKADALPTKLTRARSPLIPRETEGIEQRDLNGAKVSEYNSRETEG 193 (919)
Q Consensus 132 S~~S~~~~~w~~s~~~~g~~sgL~vkl~R~~~~li~~~~~gi~~~~~~~~~~~~~~~~~~~~ 193 (919)
+..+ ..++|.+..+|...||.+.|+-.+....|.....-+-.-..|.||.-.+..|...
T Consensus 175 ~~~~---~~~~~~~~~~G~~~GL~l~L~~~~~~y~~~~~~~~~~~~~~G~~v~iH~~~e~P~ 233 (438)
T 2qts_A 175 AGQD---GKPRLITMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPL 233 (438)
T ss_dssp CSCS---SSSCCEECSSSGGGSEEEEEECCGGGCCCCCSCCTTCCSCBSEEEEEECTTSCCC
T ss_pred CCCC---CCccceecCCccCCCceEEEEcccccccccccccccccccCceEEEECCCCCCCc
Confidence 9865 3457888999999999999998777777643221111112566666555555433
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=21.92 E-value=24 Score=28.30 Aligned_cols=31 Identities=19% Similarity=0.600 Sum_probs=24.0
Q ss_pred hccccchhHHHHHHHHHHHHHHHHH-hHhhhc
Q psy7317 877 LFLGFSLLSVVEFIYWFLKIAIILG-YRAYKK 907 (919)
Q Consensus 877 LFLGASLLSIVEIIYFLtiRL~~~c-~RR~KK 907 (919)
|.+-+|+|.+.-++-++..|++++| +||+|.
T Consensus 9 lv~aa~iiGIlHLiLwildRlffkciyrrfky 40 (43)
T 2kih_A 9 LVVAANIIGILHLILWILDRLFFKSIYRFFEH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888889999999998887 666654
No 4
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=21.60 E-value=5.2e+02 Score=24.43 Aligned_cols=11 Identities=36% Similarity=0.592 Sum_probs=6.0
Q ss_pred cccCCCccccc
Q psy7317 406 QRDLNGAKVSE 416 (919)
Q Consensus 406 ~~~~~~~~~~~ 416 (919)
.-+|.||+++.
T Consensus 191 ~a~l~ga~~~~ 201 (217)
T 2xty_A 191 GVDLQGVKLDN 201 (217)
T ss_dssp TSCCTTCEECH
T ss_pred CCccCcCEech
Confidence 34566666553
No 5
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=21.60 E-value=5.2e+02 Score=24.43 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=7.9
Q ss_pred ccccCCCcccccc
Q psy7317 426 EQRDLNGAKVSEY 438 (919)
Q Consensus 426 ~~~~~~~~~~~~~ 438 (919)
..-+|.||+++..
T Consensus 190 ~~a~l~ga~~~~~ 202 (217)
T 2xty_A 190 RGVDLQGVKLDNY 202 (217)
T ss_dssp TTSCCTTCEECHH
T ss_pred CCCccCcCEechH
Confidence 3456777777643
No 6
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=12.22 E-value=4e+02 Score=30.98 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=16.5
Q ss_pred ccccCCCccccccccccccCcccccCCCcccc
Q psy7317 342 EQRDLNGAKVSEYNSRETEGIEQRDLNGAKVS 373 (919)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (919)
..-||.||.+..-+-........-+|.|+.+.
T Consensus 142 ~gAdLsgA~L~~a~il~s~~l~~i~L~Ga~I~ 173 (613)
T 3nb2_A 142 PGMVLSGAILGDVKELFSEKSNTINLGGCYID 173 (613)
T ss_dssp TTCCCTTCBCCCCSSSSCCSTTEEEETTEEEE
T ss_pred CCceecCCCccCCeecCCcccceeeecCcEEe
Confidence 44556666665555333334444455565553
No 7
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=12.12 E-value=4e+02 Score=30.93 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=18.6
Q ss_pred ccccCCCccccccccccccCcccccCCCcccc
Q psy7317 363 EQRDLNGAKVSEYNSRETEGIEQRDLNGAKVS 394 (919)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (919)
..-||.||.+..-+-........-+|.|+.+.
T Consensus 142 ~gAdLsgA~L~~a~il~s~~l~~i~L~Ga~I~ 173 (613)
T 3nb2_A 142 PGMVLSGAILGDVKELFSEKSNTINLGGCYID 173 (613)
T ss_dssp TTCCCTTCBCCCCSSSSCCSTTEEEETTEEEE
T ss_pred CCceecCCCccCCeecCCcccceeeecCcEEe
Confidence 45567777776665444444555566666654
No 8
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=9.73 E-value=1e+03 Score=22.01 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=7.7
Q ss_pred cccCCCccccccc
Q psy7317 364 QRDLNGAKVSEYN 376 (919)
Q Consensus 364 ~~~~~~~~~~~~~ 376 (919)
.-+|.||+++.+.
T Consensus 190 ~~~l~ga~~~~~q 202 (216)
T 3pss_A 190 RVNLDGVQINEDQ 202 (216)
T ss_dssp TSCCTTCEEEGGG
T ss_pred cCcccCcEeCHHH
Confidence 3466777766543
No 9
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=7.83 E-value=1.3e+03 Score=21.94 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=4.7
Q ss_pred ccCCCcccc
Q psy7317 428 RDLNGAKVS 436 (919)
Q Consensus 428 ~~~~~~~~~ 436 (919)
-+|.||.++
T Consensus 243 a~l~ga~~~ 251 (257)
T 3du1_X 243 AELKGAIMP 251 (257)
T ss_dssp CBCTTCBCT
T ss_pred CcccccCCC
Confidence 345555554
No 10
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=7.83 E-value=1.3e+03 Score=21.94 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=5.2
Q ss_pred ccCCCcccc
Q psy7317 449 RDLNGAKVS 457 (919)
Q Consensus 449 ~~~~~~~~~ 457 (919)
-+|.||.++
T Consensus 243 a~l~ga~~~ 251 (257)
T 3du1_X 243 AELKGAIMP 251 (257)
T ss_dssp CBCTTCBCT
T ss_pred CcccccCCC
Confidence 456666654
Done!