RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7317
(919 letters)
>gnl|CDD|216157 pfam00858, ASC, Amiloride-sensitive sodium channel.
Length = 442
Score = 80.5 bits (199), Expect = 9e-16
Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 806 KHSLNCSRCAPTCYNTEYDLEISYVP-----------DARNKTWLYSG----HLDIFYGN 850
+ SL C C P C TEYD+E+S + NK+ Y L+I++
Sbjct: 342 EDSLGCD-CLPPCNETEYDVELSSAKWPSKSSAKWLAKSINKSEKYIRENIAVLNIYFEE 400
Query: 851 LGARRYLRDITFTSSDLLVFIGGVANLFLGFSLLSVVEFIY 891
L R R + +DLL IGG LFLG S+LS+VE IY
Sbjct: 401 LNYERIKRSEAYGVTDLLSDIGGQLGLFLGASVLSLVEIIY 441
Score = 39.3 bits (92), Expect = 0.008
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 113 CCEIFSLQKTEEGYCYSFNSLTSEEGKHWRESNP 146
CC+ F TE G CY+FNS + R S P
Sbjct: 162 CCDFFQPILTEYGLCYTFNSGQTGNSYPLRSSRP 195
Score = 35.1 bits (81), Expect = 0.19
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 62 HIMVHTSYEYPD-AGDGVWLPSTHGKKLSIAVFSSITMTSDSVKRLGPRERGC 113
+++H+ EYP G +P G + I+V T TS ++RL P R C
Sbjct: 224 KVLIHSPNEYPFVDSLGFTVP--PGTETFISVRPQETSTSPELRRLPPPYRNC 274
>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter. The Epithelial Na+
Channel (ENaC) Family (TC 1.A.06)The ENaC family
consists of sodium channels from animals and has no
recognizable homologues in other eukaryotes or bacteria.
The vertebrate ENaC proteins from epithelial cells
cluster tightly together on the phylogenetic tree:
voltage-insensitive ENaC homologues are also found in
the brain. Eleven sequenced C. elegans proteins,
including the degenerins, are distantly related to the
vertebrate proteins as well as to each other. At least
some ofthese proteins form part of a mechano-transducing
complex for touch sensitivity. Other members of the ENaC
family, the acid-sensing ion channels, ASIC1-3,are homo-
or hetero-oligomeric neuronal H+-gated channels that
mediate pain sensation in response to tissue acidosis.
The homologous Helix aspersa(FMRF-amide)-activated Na+
channel is the first peptide neurotransmitter-gated
ionotropic receptor to be sequenced.Mammalian ENaC is
important for the maintenance of Na+ balance and the
regulation of blood pressure. Three homologous ENaC
subunits, a, b and g, havebeen shown to assemble to form
the highly Na+-selective channel.This model is designed
from the vertebrate members of the ENaC family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 595
Score = 51.7 bits (124), Expect = 2e-06
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 807 HSLNC-SRCAPTCYNTEYDLEISYV--PDARNKTWL---------YSGH--------LDI 846
L C S C C TEY L +S P A ++ WL Y+ L+I
Sbjct: 414 EELGCFSVCREPCNFTEYKLTLSMARWPSAASEDWLLHVLSRQNEYNITLIRNGIAKLNI 473
Query: 847 FYGNLGARRYLRDITFTSSDLLVFIGGVANLFLGFSLLSVVEF---IYWFLKIAIILGYR 903
F+ L R + LL +GG L++G S+L V+E I + I ++
Sbjct: 474 FFEELNYRTIEESPAYNVVTLLSNLGGQMGLWMGASVLCVLELLELIIDLIFITLLRLLW 533
Query: 904 AYKKK 908
++K
Sbjct: 534 RFRKW 538
>gnl|CDD|223469 COG0392, COG0392, Predicted integral membrane protein [Function
unknown].
Length = 322
Score = 37.0 bits (86), Expect = 0.034
Identities = 9/62 (14%), Positives = 14/62 (22%), Gaps = 6/62 (9%)
Query: 846 IFYGNLGARRYL------RDITFTSSDLLVFIGGVANLFLGFSLLSVVEFIYWFLKIAII 899
+ Y L ++ L FI N +L S Y +
Sbjct: 64 LSYALLTLYDRTALKSLGVKLSLWKVALASFIAYFLNNITPAALGSGPAVRYRLYSRLGL 123
Query: 900 LG 901
Sbjct: 124 SV 125
>gnl|CDD|219521 pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling.
This entry represents the transmembrane region of the
7TM-DISM (7TM Receptors with Diverse Intracellular
Signalling Modules).
Length = 207
Score = 34.1 bits (79), Expect = 0.18
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 839 LYSGHLDIFYGNLGARRYLRDITFTSSDLLVFIGGVANLFLGFSLLSVVEFIYWFLKIAI 898
L G + G AR +L + + L++ IG + ++ LL F + L+I
Sbjct: 140 LVLGIIAWRKGYKPARYFL--LAW----LILLIGALIDILSLLGLLPSNFFTLYLLQIGS 193
Query: 899 IL 900
+L
Sbjct: 194 LL 195
>gnl|CDD|214414 MTH00063, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 522
Score = 34.5 bits (80), Expect = 0.31
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 862 FTSSDLLVFIGGVANLFLGFSLLSVVEFIYWFLKIAIIL 900
F +S L+VF+ N + F LL V ++ F+ + ++L
Sbjct: 391 FFNSGLMVFLWLFIN-YYVFLLLDEVVYLGVFISLVLLL 428
>gnl|CDD|233159 TIGR00867, deg-1, degenerin. The Epithelial Na+ Channel (ENaC)
Family (TC 1.A.06)The ENaC family consists of sodium
channels from animals and has no recognizable homologues
in other eukaryotes or bacteria. The vertebrate ENaC
proteins from epithelial cells cluster tightly together
on the phylogenetic tree: voltage-insensitive ENaC
homologues are also found in the brain. Eleven sequenced
C. elegans proteins, including the degenerins, are
distantly related to the vertebrate proteins as well as
to each other. At least some ofthese proteins form part
of a mechano-transducing complex for touch sensitivity.
Other members of the ENaC family, the acid-sensing ion
channels, ASIC1-3,are homo- or hetero-oligomeric
neuronal H+-gated channels that mediate pain sensation
in response to tissue acidosis. The homologous Helix
aspersa(FMRF-amide)-activated Na+ channel is the first
peptide neurotransmitter-gated ionotropic receptor to be
sequenced.Mammalian ENaC is important for the
maintenance of Na+ balance and the regulation of blood
pressure. Three homologous ENaC subunits, a, b and g,
havebeen shown to assemble to form the highly
Na+-selective channel.This model is designed from the
invertebrate members of the ENaC family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 600
Score = 33.7 bits (77), Expect = 0.52
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 844 LDIFYGNLGARRYLRDITFTSSDLLVFIGGVANLFLGFSLLSVVEFI 890
+++FY L +T +L+ GG L+LG S+++V EF+
Sbjct: 552 IEVFYEQLNYELLTESEAYTLVNLIADFGGQLGLWLGASVITVCEFV 598
>gnl|CDD|224196 COG1277, NosY, ABC-type transport system involved in multi-copper
enzyme maturation, permease component [General function
prediction only].
Length = 278
Score = 33.2 bits (76), Expect = 0.54
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 861 TFTSSDLLVFIGGVA--NLFLGFSLLSVVEFIYWFLK-IAIILGYRAYKKKGGDYDSNTV 917
+ L+ + + N FL L SV +FL +AI+LG +++S T+
Sbjct: 36 LLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLPLLAILLGADLI---SSEFESGTI 92
Query: 918 RY 919
+
Sbjct: 93 KL 94
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.128 0.353
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,251,316
Number of extensions: 4271541
Number of successful extensions: 2284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2238
Number of HSP's successfully gapped: 17
Length of query: 919
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 813
Effective length of database: 6,236,078
Effective search space: 5069931414
Effective search space used: 5069931414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (28.4 bits)