RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7317
(919 letters)
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG;
1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Length = 438
Score = 80.6 bits (197), Expect = 6e-16
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 798 PGFDSLNIKHSLNCSRCAPTCYNTEYDLEISYVP-----------DARNKTWLYSGH--- 843
P D L K + C C C T Y E+S V NK+ Y G
Sbjct: 322 PALDFLVEKDNEYC-VCEMPCNVTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENIL 380
Query: 844 -LDIFYGNLGARRYLRDITFTSSDLLVFIGGVANLFLGFSLLSVVEFIYWFLKI 896
LDIF+ L + + + LL IGG LF+G S+L+V+E + ++
Sbjct: 381 VLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASILTVLELFDYAYEV 434
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.012
Identities = 56/326 (17%), Positives = 103/326 (31%), Gaps = 100/326 (30%)
Query: 9 ISSDPAIQPALVHIMSALSLMQKPSYHRMAPHIN--ASMQV-LPL--LSQVNISDFMLHI 63
I + + ++ L ++ PS P + S+ + PL + Q + H
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPS---NTPDKDYLLSIPISCPLIGVIQ------LAHY 249
Query: 64 MV------HTSYEYPDAGDGVWLPSTHGKKLSIAVFSSITMTSDSVKRLGPRERGCCEI- 116
+V T E G + H + L AV + T + +S + +
Sbjct: 250 VVTAKLLGFTPGELRSYLKGA---TGHSQGLVTAVAIAETDSWESFFVSVRK---AITVL 303
Query: 117 FSLQKTEEGY----CYSFNSLT------SEEGKHWRESNPRP------NKADALPTKLTR 160
F + G Y SL S E E P P + + + +
Sbjct: 304 FFI-----GVRCYEAYPNTSLPPSILEDSLEN---NEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 161 ARSPLIPRETEGIEQRDLNGAKVSEYNSRE----TEGIEQRDLNGAKVSEYNSRETEGIE 216
S L P + +E +S N + + G + L G ++ ++ G++
Sbjct: 356 TNSHL-PAG-KQVE--------ISLVNGAKNLVVS-G-PPQSLYGLNLTLRKAKAPSGLD 403
Query: 217 Q-------RDLNGAKV---------SEYNSRETEGIEQRDLNGAKVSEYNSRETEGIEQR 260
Q R L + S ++ I + DL VS +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK-DLVKNNVS---------FNAK 453
Query: 261 DLNGAKVSEYNSRETE-GIEQRDLNG 285
D+ ++ Y+ T G + R L+G
Sbjct: 454 DI---QIPVYD---TFDGSDLRVLSG 473
Score = 31.6 bits (71), Expect = 1.7
Identities = 29/189 (15%), Positives = 63/189 (33%), Gaps = 52/189 (27%)
Query: 643 AKVSEYNSRETEGIEQ-----RDLNGAKVSEYNSRETEGIEQ--RDLNGAK---VSEYNS 692
+ E + EG+ +L +V +Y + + L K +S N
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDY-------VNKTNSHLPAGKQVEISLVNG 373
Query: 693 RE----TEGIEQRDLNGAKVSEYNSRETEGIEQRDLNGAKVSEYNSRETEGIEQRDLNGA 748
+ + G + L G ++ ++ G++Q +++ ++ R+ + R L
Sbjct: 374 AKNLVVS-G-PPQSLYGLNLTLRKAKAPSGLDQ-----SRI-PFSERKLK-FSNRFLP-- 422
Query: 749 KIMV--HTSYEYPDAGDGV--WLPST----HGKKLSIAVFSCPSRRHLRLLRPPDGTPGF 800
+ H+ A D + L + K + I V+ LR+L
Sbjct: 423 -VASPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG------- 473
Query: 801 DSLNIKHSL 809
+I +
Sbjct: 474 ---SISERI 479
Score = 30.4 bits (68), Expect = 3.3
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 30/121 (24%)
Query: 16 QPALVHI-MSALSLMQK----PSYHRMAPH-------INASMQVLPLLSQVNISDFMLHI 63
QPAL + +A ++ P+ A H + + V+ + S V + +
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV----VFY 1788
Query: 64 ---MVHTSYEYPDAGDGVW-----LPSTHGKKLSIAVFSSITMTSDSVKRLGPRERGCCE 115
+ + + G + P S + V+R+G R E
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV------VERVGKRTGWLVE 1842
Query: 116 I 116
I
Sbjct: 1843 I 1843
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.17
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 13/37 (35%)
Query: 773 KKLSIAVFSCPSRRHLRLLRPPDGTPGFDSLNIKHSL 809
KKL + L+L D P +L IK ++
Sbjct: 23 KKLQ-------AS--LKLY-ADDSAP---ALAIKATM 46
Score = 29.1 bits (64), Expect = 3.4
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 18 ALVHIMSALSLMQKPSYHRMAPH--INASMQ 46
AL + ++L L S AP I A+M+
Sbjct: 21 ALKKLQASLKLYADDS----APALAIKATME 47
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 32.0 bits (72), Expect = 0.91
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 12/59 (20%)
Query: 841 SGHLDIFYGNLGARRYLRDITFTSSD------LLVFIGGVANLFLGFSLLSVVEFIYWF 893
G +I L R +L D + + G F+L Y
Sbjct: 18 DGSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLYLVTNALFAL------AYLA 70
>1egg_A Macrophage mannose receptor; C-type lectin, sugar binding protein;
2.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1egi_A
Length = 147
Score = 28.2 bits (63), Expect = 7.3
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 112 GCCEIFSLQKTEEGYCYSFNSLTSEEGKHWRES 144
C + C+ + E K W ES
Sbjct: 3 PKCPEDWGASSRTSLCFKLYAKGKHEKKTWFES 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.128 0.353
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,669,306
Number of extensions: 729988
Number of successful extensions: 823
Number of sequences better than 10.0: 1
Number of HSP's gapped: 805
Number of HSP's successfully gapped: 29
Length of query: 919
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 817
Effective length of database: 3,853,851
Effective search space: 3148596267
Effective search space used: 3148596267
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.3 bits)