RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7317
         (919 letters)



>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 66

 Score = 26.2 bits (58), Expect = 4.1
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 53  QVNISDFMLHIMVHTSYEYPDAGDGVWLPSTHGKKLSIAVFSSITMTSDSV 103
            V++ DF   +++     + D  +G   P   G  L+   +S +      +
Sbjct: 10  YVSVRDFKGKVLIDIREYWMD-PEGEMKPGRKGISLNPEQWSQLKEQISDI 59


>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 421

 Score = 28.6 bits (63), Expect = 4.4
 Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 6/69 (8%)

Query: 804 NIKHSLNCSRCAPTCYNTEYDLEISYVPDARN------KTWLYSGHLDIFYGNLGARRYL 857
            + H  +C+      +    D    Y     +         +Y+G  D     LG + + 
Sbjct: 291 EVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWT 350

Query: 858 RDITFTSSD 866
             + +   +
Sbjct: 351 DVLPWKYDE 359


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.128    0.353 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,996,029
Number of extensions: 133941
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 919
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 825
Effective length of database: 1,116,976
Effective search space: 921505200
Effective search space used: 921505200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.3 bits)