BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy732
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
 pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
 pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
 pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
 pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
 pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
          Length = 476

 Score = 37.7 bits (86), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 9   LGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDGYIYNY 68
           L S  D     L + L+ G E+ I++DA + +   + Q  W LRE I  +   +G    +
Sbjct: 295 LSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKH 354

Query: 69  DISLSLKDFYSIIPIMKERLKDQPVVTVCG-----YGHL 102
           DIS+ +    + +P   E+     V  + G     +GHL
Sbjct: 355 DISVPV----AAVPQFIEQANAAVVALIPGARPVPFGHL 389


>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
           (Gdp-3'p- Bound) Form
 pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
           (Gppnhp-Bound) Form
          Length = 178

 Score = 30.8 bits (68), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 12/64 (18%)

Query: 47  KIWPLRERIVESCLKDGYIY------------NYDISLSLKDFYSIIPIMKERLKDQPVV 94
           +IW +  + +   + D YIY            NY    +L+D+Y+++  + E  + QP+V
Sbjct: 59  QIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV 118

Query: 95  TVCG 98
            + G
Sbjct: 119 ALVG 122


>pdb|2VAM|A Chain A, Ftsz B. Subtilis
 pdb|2VXY|A Chain A, The Structure Of Ftsz From Bacillus Subtilis At 1.7a
           Resolution
          Length = 382

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 83  IMKERLKDQPVVTVCGYGHLERLKD 107
           ++ E LKD+ VVTV   G +E+ KD
Sbjct: 297 VINENLKDEIVVTVIATGFIEQEKD 321


>pdb|2RHH|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Bound
           Sulfate Ion
 pdb|2RHJ|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Two
           Sulfate Ions And Sodium Ion In The Nucleotide Pocket
 pdb|2RHL|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
           With Bound Gdp
 pdb|2RHL|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
           With Bound Gdp
 pdb|2RHO|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
           With Bound Gdp And Gtp-Gamma-S
 pdb|2RHO|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
           With Bound Gdp And Gtp-Gamma-S
          Length = 325

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 83  IMKERLKDQPVVTVCGYGHLERL 105
           ++ E LKD+ VVTV   G LE L
Sbjct: 287 VINENLKDEIVVTVIATGFLENL 309


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.144    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,904,089
Number of Sequences: 62578
Number of extensions: 149067
Number of successful extensions: 389
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)