BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy732
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46681|DLD2_YEAST D-lactate dehydrogenase [cytochrome] 2, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=DLD2 PE=1 SV=1
Length = 530
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Query: 10 GSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDGYIYNYD 69
GS DHD KL TFL++ +E I+ D V+ +E+++Q +W RE I E+ +G +Y YD
Sbjct: 348 GSNKDHDDSKLETFLENVMEEGIVTDGVVAQDETELQNLWKWREMIPEASQANGGVYKYD 407
Query: 70 ISLSLKDFYSIIPIMKERLKD--------QPVVTVCGYGHL 102
+SL LKD YS++ RL + +PVV GYGH+
Sbjct: 408 VSLPLKDLYSLVEATNARLSEAELVGDSPKPVVGAIGYGHV 448
>sp|Q8N465|D2HDH_HUMAN D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens
GN=D2HGDH PE=1 SV=3
Length = 521
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 10 GSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDGYIYNYD 69
GS HDAEKL FL+ + + ++ D M +++ K++ +W LRERI E+ +DGY+Y YD
Sbjct: 344 GSNAGHDAEKLGHFLEHALGSGLVTDGTMATDQRKVKMLWALRERITEALSRDGYVYKYD 403
Query: 70 ISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHL 102
+SL ++ Y I+ ++ RL V GYGHL
Sbjct: 404 LSLPVERLYDIVTDLRARLGPH-AKHVVGYGHL 435
>sp|Q1JPD3|D2HDH_BOVIN D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus
GN=D2HGDH PE=2 SV=2
Length = 544
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 3 PFFCC--CLGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCL 60
PF+ GS HDAEKL FL+ +++ ++ D + S+E +I+ +W LRERI E+
Sbjct: 358 PFYVLIETAGSGPGHDAEKLGCFLEQVLDSGLVTDGTLGSDERRIKMLWALRERITEALS 417
Query: 61 KDGYIYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHL 102
+DGY+Y YD+SL L Y ++ ++ RL V GYGHL
Sbjct: 418 RDGYVYKYDLSLPLDRLYDLVGDLRARLGPS-AKHVVGYGHL 458
>sp|P84850|D2HDH_RAT D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=D2hgdh PE=3 SV=1
Length = 535
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 10 GSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDGYIYNYD 69
GS HDAEKL L+ + + +++D M +++ K+Q +W LRERI E+ +DGY++ YD
Sbjct: 358 GSSAGHDAEKLTNVLEQVLNSGLVIDGTMATDQRKVQMLWALRERITEALSRDGYVFKYD 417
Query: 70 ISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHL 102
+SL ++ Y ++ ++ RL + V GYGHL
Sbjct: 418 LSLPVERLYDLVIDLRTRLGPR-AKHVVGYGHL 449
>sp|Q8CIM3|D2HDH_MOUSE D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus
GN=D2hgdh PE=2 SV=3
Length = 535
Score = 82.0 bits (201), Expect = 9e-16, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 10 GSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDGYIYNYD 69
GS HDAEKL L+ + + ++ D M +++ K+Q +W LRERI E+ +DGY++ YD
Sbjct: 358 GSSAGHDAEKLTNVLEQVLNSGLVTDGTMATDQRKVQMLWALRERITEALSRDGYVFKYD 417
Query: 70 ISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHL 102
+SL ++ Y ++ ++ RL + V GYGHL
Sbjct: 418 LSLPVERLYDLVIDLRTRLGPR-AKHVVGYGHL 449
>sp|A1L258|D2HDH_DANRE D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Danio rerio
GN=d2hgdh PE=2 SV=1
Length = 533
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 3 PFFCC--CLGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCL 60
PF+ GS HD EKL+ FL++ + ++++ D + +E +KI+ +W LRER+ E+
Sbjct: 346 PFYIVIETAGSNATHDEEKLHQFLEEVMTSSLVTDGTVATEATKIKALWSLRERVTEALT 405
Query: 61 KDGYIYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHL 102
+GY Y YDISL ++ Y ++ M+ L V GYGH+
Sbjct: 406 HEGYTYKYDISLPVEKIYDLVQDMRRHLGGM-AKNVVGYGHV 446
>sp|P39976|DLD3_YEAST D-lactate dehydrogenase [cytochrome] 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DLD3 PE=1 SV=1
Length = 496
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 10 GSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDGYIYNYD 69
GS HD EKL FL+D ++ +I + +M +++ ++W R+ + +C G +Y YD
Sbjct: 314 GSNKRHDDEKLTAFLKDTTDSKLISEGMMAKDKADFDRLWTWRKSVPTACNSYGGMYKYD 373
Query: 70 ISLSLKDFYSIIPIMKERLK--------DQPVVTVCGYGHL 102
+SL LKD YS+ + ERL +PVV CGYGH+
Sbjct: 374 MSLQLKDLYSVSAAVTERLNAAGLIGDAPKPVVKSCGYGHV 414
>sp|Q9C1X2|YN53_SCHPO Putative D-lactate dehydrogenase C713.03, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC713.03 PE=3 SV=1
Length = 526
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 11/120 (9%)
Query: 3 PFFCC--CLGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCL 60
PF+ GS +HD +K+ ++D +E II D V+ +ES+++ +W RE I E
Sbjct: 333 PFYVLVETQGSNKEHDEQKITALVEDLLEKEIISDGVLAQDESQLRVLWERREGITECLA 392
Query: 61 KDGY-IYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVTVCGYGHL 119
K G +Y YD+SL L Y ++ K+RL + + L+ + PV+ V G+GH+
Sbjct: 393 KAGSGVYKYDVSLPLPVLYDLVNDTKKRLIE--------FNLLDDTPEHPVIDVVGFGHM 444
>sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis
thaliana GN=D2HGDH PE=1 SV=3
Length = 559
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 10 GSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDGYIYNYD 69
GS +D EKL FL +E ++ D V+ + ++ W +RE I E+ K G +Y YD
Sbjct: 380 GSDETNDREKLEAFLLKSLEKGLVSDGVIAQDINQASSFWRIREGITEALQKAGAVYKYD 439
Query: 70 ISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHL 102
+SL +++ Y+I+ ++ RL D + V GYGHL
Sbjct: 440 LSLPVEEIYNIVNDLRGRLGD--LANVMGYGHL 470
>sp|Q7XI14|D2HDH_ORYSJ Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza
sativa subsp. japonica GN=D2HGDH PE=3 SV=1
Length = 559
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 10 GSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDGYIYNYD 69
GS +D KL FL +E+ ++ D V+ + S+ W +RE I E+ +K G +Y YD
Sbjct: 382 GSDESYDKAKLEAFLLRSMEDGLVADGVIAQDISQASNFWRIREGISEASVKVGAVYKYD 441
Query: 70 ISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHL 102
+S+ ++ Y I+ M+ R+ D + V GYGHL
Sbjct: 442 LSIPVEKLYDIVEEMRSRVGD--MGQVLGYGHL 472
>sp|B8B7X6|D2HDH_ORYSI Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza
sativa subsp. indica GN=D2HGDH PE=3 SV=1
Length = 559
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 10 GSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDGYIYNYD 69
GS +D KL FL +E+ ++ D V+ + S+ W +RE I E+ +K G +Y YD
Sbjct: 382 GSDESYDKAKLEAFLLRSMEDGLVADGVIAQDISQASNFWRIREGISEASVKVGAVYKYD 441
Query: 70 ISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHL 102
+S+ ++ Y I+ M+ R+ D + V GYGHL
Sbjct: 442 LSIPVEKLYDIVEEMRSRVGD--MGQVLGYGHL 472
>sp|Q42527|PAI2_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 2, chloroplastic
OS=Arabidopsis thaliana GN=PAI2 PE=2 SV=1
Length = 275
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 63 GYIYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCG 98
GY N +S S+ + ++ P ER KD+P+V +CG
Sbjct: 37 GYAQNRKLSCSVSNTENVAPKDDERGKDRPLVKMCG 72
>sp|Q42440|PAI1_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic
OS=Arabidopsis thaliana GN=PAI1 PE=1 SV=1
Length = 275
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 63 GYIYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCG 98
GY N +S S+ + ++ P ER KD+P+V +CG
Sbjct: 37 GYAQNRKLSCSVSNTENVAPKDDERGKDRPLVKMCG 72
>sp|Q99KL7|RAB28_MOUSE Ras-related protein Rab-28 OS=Mus musculus GN=Rab28 PE=2 SV=1
Length = 221
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 47 KIWPLRERIVESCLKDGYIY------------NYDISLSLKDFYSIIPIMKERLKDQPVV 94
++W + + + + D YIY NY +L+D+YS++ + E + QP+V
Sbjct: 65 QVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLV 124
Query: 95 TVCG 98
+ G
Sbjct: 125 ALVG 128
>sp|P51158|RAB28_RAT Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2 SV=1
Length = 221
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 47 KIWPLRERIVESCLKDGYIY------------NYDISLSLKDFYSIIPIMKERLKDQPVV 94
++W + + + + D YIY NY +L+D+YS++ + E + QP+V
Sbjct: 65 QVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLV 124
Query: 95 TVCG 98
+ G
Sbjct: 125 ALVG 128
>sp|Q54NZ8|ISC1B_DICDI Isochorismatase family protein 1B OS=Dictyostelium discoideum
GN=DDB_G0284901 PE=3 SV=1
Length = 206
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 6 CCCLGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEES-KIQKIWPLRERIVESCLKDGY 64
C L S +D FL++G + +I+ DAV + + ++ + +R+ +
Sbjct: 117 VCVLQSTLD--------FLENGYDVHILSDAVSSNNNNDRLIALERMRQSGAFITTTESI 168
Query: 65 IYNYDISLSLKDFYSIIPIMKERLKD 90
I+ + K F SI+PI K+R D
Sbjct: 169 IFQLTRDATHKSFKSIVPITKQRRDD 194
>sp|Q3SWY9|RAB28_BOVIN Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 PE=2 SV=1
Length = 221
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 47 KIWPLRERIVESCLKDGYIY------------NYDISLSLKDFYSIIPIMKERLKDQPVV 94
++W + + + + D YIY NY +L+D+YS++ + E + QP+V
Sbjct: 65 QVWDIGGQTIGGKMLDKYIYGAQGVLLVYDVTNYQSFENLEDWYSVVKKVSEESETQPLV 124
Query: 95 TVCG 98
+ G
Sbjct: 125 ALVG 128
>sp|Q168U9|SYT_ROSDO Threonine--tRNA ligase OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=thrS PE=3 SV=1
Length = 648
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 45 IQKIWPLRERIVESCLKDGYIYNYDI--SLSLKDFYSIIPIMKERL-KDQPVVT 95
+Q+IWP + + +KDG+ Y++D + S +D I MKE + K PV T
Sbjct: 86 VQEIWPETKVTIGPVIKDGWYYDFDRAEAFSPEDLGLIEKKMKEIINKRDPVRT 139
>sp|P51157|RAB28_HUMAN Ras-related protein Rab-28 OS=Homo sapiens GN=RAB28 PE=1 SV=2
Length = 221
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 47 KIWPLRERIVESCLKDGYIY------------NYDISLSLKDFYSIIPIMKERLKDQPVV 94
+IW + + + + D YIY NY +L+D+Y+++ + E + QP+V
Sbjct: 65 QIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV 124
Query: 95 TVCG 98
+ G
Sbjct: 125 ALVG 128
>sp|Q8LPI9|PAI3_ARATH N-(5'-phosphoribosyl)anthranilate isomerase 3, chloroplastic
OS=Arabidopsis thaliana GN=PAI3 PE=2 SV=1
Length = 244
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 63 GYIYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCG 98
GY N +S S+ ++ P +R KD+P+V +CG
Sbjct: 37 GYAQNRKLSCSVSSTENVAPKDDDRGKDRPLVKMCG 72
>sp|C0LGN2|Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein
kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1
SV=1
Length = 1020
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 3 PFFCCCLGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERI 55
P G CV+ D L + + +ENN + A+ +E++I WP+R++I
Sbjct: 726 PHLVKLYGCCVEGDQLLL---VYEYLENNSLARALFGPQETQIPLNWPMRQKI 775
>sp|P25644|PAT1_YEAST DNA topoisomerase 2-associated protein PAT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PAT1 PE=1
SV=4
Length = 796
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 13 VDHDAEKLNTFLQDGIEN-NIILDAVMCSEESKIQKIWPLRE------RIV-ESCLKDGY 64
+ D+ + N I N I D + S ESKIQ I+P RE R+ + + + Y
Sbjct: 644 IKQDSSRSNILSSPEISTWNEIYDKLFTSLESKIQLIFPPREYNDHIMRLQNDKFMDEAY 703
Query: 65 IYNYDISLSLKDFYSIIPIMKERLKDQPVVTV 96
I+ + SL+L + I+ + ++D+ T+
Sbjct: 704 IWQFLASLALSGKLNHQRIIIDEVRDEIFATI 735
>sp|Q8CP18|DNAJ_STAES Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
12228) GN=dnaJ PE=3 SV=1
Length = 373
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 62 DGYIYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCG---YGHLERLKDQPVVTVCGYGH 118
D YN DIS S I I LK V+T+ G RLKD+ V V GYGH
Sbjct: 264 DDIYYNLDISFSQAALGDEIKI--PTLKSNVVLTIPAGTQTGKQFRLKDKGVKNVHGYGH 321
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.144 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,799,896
Number of Sequences: 539616
Number of extensions: 1875342
Number of successful extensions: 5310
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5283
Number of HSP's gapped (non-prelim): 36
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)