Query psy732
Match_columns 119
No_of_seqs 162 out of 1094
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 23:47:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pm9_A Putative oxidoreductase 99.9 2.6E-26 9E-31 180.1 11.4 112 3-115 290-402 (476)
2 1e8g_A Vanillyl-alcohol oxidas 99.7 1.2E-17 4E-22 133.2 4.5 106 3-112 352-470 (560)
3 1wvf_A 4-cresol dehydrogenase 99.6 5.1E-16 1.7E-20 122.7 4.3 105 3-111 321-438 (520)
4 1f0x_A DLDH, D-lactate dehydro 99.6 5E-16 1.7E-20 124.1 2.2 105 2-114 390-502 (571)
5 2uuu_A Alkyldihydroxyacetoneph 99.4 4.4E-13 1.5E-17 107.4 7.6 103 3-113 394-510 (584)
6 2exr_A Cytokinin dehydrogenase 99.2 2.5E-12 8.6E-17 101.8 3.0 91 4-114 314-416 (524)
7 1w1o_A Cytokinin dehydrogenase 98.7 7.6E-09 2.6E-13 81.9 4.5 106 3-115 327-459 (534)
8 4bby_A Alkyldihydroxyacetoneph 98.4 2.5E-06 8.6E-11 69.1 9.9 73 40-112 496-580 (658)
9 2vfr_A Xylitol oxidase, aldito 96.8 0.00077 2.6E-08 51.7 3.3 44 66-109 291-337 (422)
10 2ns6_A Mobilization protein A; 83.0 6.2 0.00021 26.8 7.2 69 44-116 52-127 (185)
11 3n4s_A Monopolin complex subun 57.3 7.6 0.00026 24.6 2.5 27 64-90 90-116 (116)
12 2gjf_A Designed protein; proca 53.3 11 0.00037 21.4 2.6 20 67-86 48-67 (78)
13 1vjq_A Designed protein; struc 48.0 18 0.00061 20.5 3.0 20 67-86 40-59 (79)
14 3mhy_A PII-like protein PZ; PI 47.9 21 0.00071 21.9 3.5 39 65-112 58-96 (112)
15 3l7p_A Putative nitrogen regul 47.8 23 0.0008 21.9 3.7 39 65-112 61-99 (115)
16 4aff_A Nitrogen regulatory pro 46.9 19 0.00066 22.3 3.2 39 65-112 58-96 (116)
17 2p10_A MLL9387 protein; putati 46.8 55 0.0019 23.8 6.0 75 23-100 155-234 (286)
18 3ncq_A Nitrogen regulatory pro 46.5 25 0.00087 21.9 3.7 39 65-112 58-96 (119)
19 1tgl_A Triacyl-glycerol acylhy 46.0 20 0.00068 25.2 3.6 21 81-101 123-143 (269)
20 3t9z_A GLNK3, nitrogen regulat 44.0 29 0.001 21.6 3.7 40 64-112 57-96 (118)
21 1tib_A Lipase; hydrolase(carbo 42.1 27 0.00093 24.5 3.8 23 79-101 123-145 (269)
22 1ylq_A Putative nucleotidyltra 40.7 5.3 0.00018 23.8 -0.2 32 79-110 2-34 (96)
23 3g7n_A Lipase; hydrolase fold, 40.4 27 0.00093 24.6 3.5 24 78-101 108-131 (258)
24 3lxy_A 4-hydroxythreonine-4-ph 39.0 18 0.00063 26.9 2.5 39 68-107 167-221 (334)
25 3td3_A Outer membrane protein 38.8 22 0.00074 21.8 2.5 33 71-103 23-55 (123)
26 1tia_A Lipase; hydrolase(carbo 37.2 31 0.0011 24.4 3.4 23 79-101 122-144 (279)
27 1lgy_A Lipase, triacylglycerol 36.2 38 0.0013 23.8 3.8 23 79-101 122-144 (269)
28 1no5_A Hypothetical protein HI 36.1 32 0.0011 20.8 3.0 32 78-109 11-43 (114)
29 1uwc_A Feruloyl esterase A; hy 35.5 37 0.0013 23.8 3.5 23 79-101 110-132 (261)
30 2hqs_H Peptidoglycan-associate 35.4 28 0.00095 21.3 2.6 32 73-104 17-48 (118)
31 2hfq_A Hypothetical protein; A 32.9 46 0.0016 20.6 3.2 31 61-91 35-65 (109)
32 2aiz_P Outer membrane protein 32.8 32 0.0011 21.6 2.6 38 67-104 35-72 (134)
33 4emc_A Monopolin complex subun 32.7 18 0.00062 24.8 1.4 27 65-91 156-182 (190)
34 2kgw_A Outer membrane protein 32.7 31 0.0011 21.4 2.5 29 75-103 37-65 (129)
35 1xm7_A Hypothetical protein AQ 32.4 25 0.00086 23.0 2.2 20 82-102 129-148 (195)
36 3oon_A Outer membrane protein 32.4 29 0.00099 21.2 2.3 30 74-103 29-58 (123)
37 3h0g_E DNA-directed RNA polyme 31.9 7.7 0.00026 27.1 -0.5 27 40-66 3-29 (210)
38 3o0d_A YALI0A20350P, triacylgl 30.5 52 0.0018 23.7 3.7 23 79-101 139-161 (301)
39 3d03_A Phosphohydrolase; glyce 29.8 30 0.001 23.4 2.2 23 82-104 176-198 (274)
40 2nxf_A Putative dimetal phosph 29.5 33 0.0011 23.7 2.5 21 82-102 246-266 (322)
41 2dhm_A Protein BOLA; stationar 28.8 42 0.0014 20.7 2.6 13 100-113 38-50 (107)
42 2k1s_A Inner membrane lipoprot 28.4 48 0.0016 21.1 2.9 33 72-104 44-76 (149)
43 3cyp_B Chemotaxis protein MOTB 28.3 48 0.0016 20.8 2.9 32 73-104 15-47 (138)
44 3ngm_A Extracellular lipase; s 28.2 65 0.0022 23.5 3.9 24 78-101 120-143 (319)
45 1ute_A Protein (II purple acid 26.3 34 0.0012 23.5 2.1 23 79-102 200-222 (313)
46 1dzf_A DNA-directed RNA polyme 26.3 17 0.00057 25.5 0.4 24 42-65 6-29 (215)
47 3uue_A LIP1, secretory lipase 26.2 45 0.0015 23.7 2.7 24 78-101 122-145 (279)
48 1php_A 3-phosphoglycerate kina 25.5 59 0.002 24.8 3.3 37 66-104 18-62 (394)
49 1vpe_A Phosphoglycerate kinase 25.1 60 0.002 24.8 3.3 37 66-104 17-61 (398)
50 3ib7_A ICC protein; metallopho 25.1 39 0.0013 23.6 2.2 20 82-102 201-220 (330)
51 3ck2_A Conserved uncharacteriz 25.1 36 0.0012 21.9 1.9 19 83-102 96-114 (176)
52 1vk8_A Hypothetical protein TM 25.1 96 0.0033 19.0 3.7 26 71-97 22-50 (106)
53 2ibo_A Hypothetical protein SP 24.6 90 0.0031 18.9 3.5 25 72-97 10-37 (104)
54 3cki_B Metalloproteinase inhib 24.4 34 0.0012 21.2 1.6 18 93-110 76-93 (121)
55 1dp7_P MHC class II transcript 23.3 42 0.0014 19.4 1.7 17 66-82 11-27 (76)
56 1zmr_A Phosphoglycerate kinase 23.2 69 0.0024 24.3 3.3 36 66-103 18-61 (387)
57 4hl9_A Antibiotic biosynthesis 23.1 69 0.0023 19.6 2.8 41 66-115 26-66 (118)
58 16pk_A PGK, 3-phosphoglycerate 22.9 70 0.0024 24.5 3.3 37 66-104 17-61 (415)
59 2fb0_A Conserved hypothetical 22.7 77 0.0026 17.8 2.9 33 67-99 8-43 (94)
60 3hr4_A Nitric oxide synthase, 22.6 59 0.002 22.4 2.7 35 72-107 101-135 (219)
61 3k44_A Purine-rich binding pro 22.5 46 0.0016 21.8 1.9 25 67-91 41-65 (146)
62 2gw8_A PII signal transduction 22.4 92 0.0032 18.8 3.3 39 65-112 60-98 (114)
63 1v6s_A Phosphoglycerate kinase 22.3 74 0.0025 24.2 3.3 36 66-103 16-59 (390)
64 1nnw_A Hypothetical protein; s 22.1 48 0.0016 22.4 2.1 20 83-102 157-176 (252)
65 1v60_A BOLA1, riken cDNA 18100 22.0 1.1E+02 0.0036 19.3 3.6 13 100-113 55-67 (123)
66 1v54_G Cytochrome C oxidase po 21.9 26 0.0009 20.8 0.6 16 102-117 62-83 (85)
67 3lub_A Putative creatinine ami 21.9 74 0.0025 22.3 3.1 36 68-104 86-123 (254)
68 3tgh_A Glideosome-associated p 21.8 52 0.0018 24.1 2.4 23 79-102 212-234 (342)
69 2eg2_A Nitrogen regulatory pro 21.8 1.3E+02 0.0043 18.1 3.9 40 64-112 57-96 (112)
70 2ns1_B Nitrogen regulatory pro 21.8 97 0.0033 18.8 3.3 39 65-112 62-100 (116)
71 3o63_A Probable thiamine-phosp 21.5 63 0.0022 22.6 2.7 29 72-101 76-104 (243)
72 1hsk_A UDP-N-acetylenolpyruvoy 21.5 68 0.0023 23.3 2.9 28 4-31 274-301 (326)
73 3ff4_A Uncharacterized protein 21.3 49 0.0017 20.5 1.9 30 65-99 59-88 (122)
74 1kor_A Argininosuccinate synth 21.3 54 0.0018 24.7 2.4 28 82-110 97-124 (400)
75 3bdv_A Uncharacterized protein 21.3 1E+02 0.0035 19.1 3.6 27 74-101 55-81 (191)
76 3e8o_A Uncharacterized protein 21.1 72 0.0025 19.2 2.6 25 66-90 22-46 (119)
77 3m0z_A Putative aldolase; MCSG 21.0 2.3E+02 0.0078 20.1 6.6 60 37-106 19-78 (249)
78 2j8p_A Cleavage stimulation fa 21.0 40 0.0014 17.9 1.2 18 39-56 26-43 (49)
79 3ldt_A Outer membrane protein, 21.0 49 0.0017 21.7 1.9 36 68-103 60-95 (169)
80 1iv0_A Hypothetical protein; r 20.5 89 0.003 18.6 2.9 34 74-108 33-68 (98)
81 3e0x_A Lipase-esterase related 20.4 1.1E+02 0.0037 19.3 3.5 27 74-102 60-92 (245)
82 1pch_A Phosphocarrier protein; 20.2 1.1E+02 0.0039 17.7 3.3 19 2-20 58-76 (88)
83 1hwu_A PII protein; herbaspiri 20.1 1.1E+02 0.0039 18.2 3.4 39 65-112 58-96 (112)
No 1
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=99.94 E-value=2.6e-26 Score=180.09 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=99.9
Q ss_pred ceEEEecCCCchhHHHHHHHHHHHHhhcCcccceeecCCHHHHHHHHHhhhhcHHHhhcCCCceeeEeeeccchHHHHHH
Q psy732 3 PFFCCCLGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDGYIYNYDISLSLKDFYSIIP 82 (119)
Q Consensus 3 ~LlvE~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~DvaVP~~~l~~~i~ 82 (119)
.||||++|++ +.++++++++.+.+.+.+...+..++++++++++||++|+.++++++..++.+++|++||+++|++|++
T Consensus 290 ~llve~~g~~-~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~vP~~~l~~~~~ 368 (476)
T 3pm9_A 290 YVLIELSSPR-DDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIE 368 (476)
T ss_dssp EEEEEEEESS-SCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTHHHHTGGGCCEECCEEECCGGGHHHHHH
T ss_pred EEEEEEccCc-HHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHHHHHHHHHHHhhcCCceeEEEEeeHHHHHHHHH
Confidence 4789999986 456777777777666666567889999999999999999999999888777899999999999999999
Q ss_pred HHHHHHhcC-CCCeEEeeeeeCCCCcceeeecCC
Q psy732 83 IMKERLKDQ-PVVTVCGYGHLERLKDQPVVTVCG 115 (119)
Q Consensus 83 ~~~~~~~~~-p~~~~~~~GH~GDGNlH~~i~~~~ 115 (119)
+++++++++ |++++++|||+||||+|++|+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~gH~gdGnlH~~i~~~~ 402 (476)
T 3pm9_A 369 QANAAVVALIPGARPVPFGHLGDGNIHYNVSQPV 402 (476)
T ss_dssp HHHHHHHHHSTTCEEEEEEEGGGTEEEEEEECCT
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCceEEEEecCC
Confidence 999999998 899999999999999999999854
No 2
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=99.69 E-value=1.2e-17 Score=133.18 Aligned_cols=106 Identities=9% Similarity=0.047 Sum_probs=82.9
Q ss_pred ceEEEecCCCchhHHHHHHHHHHHHhhcCcccceeecCCHHHHHHHHHhhhhcH---HHhhcC--------CCceeeEee
Q psy732 3 PFFCCCLGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIV---ESCLKD--------GYIYNYDIS 71 (119)
Q Consensus 3 ~LlvE~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~lW~~R~~~~---~~~~~~--------~~~~~~Dva 71 (119)
.|++|++|+ ++.++++++.+.+ +++..++.++.++.++++.+.+|. |+.++ +++... +..+++|++
T Consensus 352 ~l~~e~~g~-~~~v~~~~~~i~~-i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~ 428 (560)
T 1e8g_A 352 NFYGALYGP-EPIRRVLWETIKD-AFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPI 428 (560)
T ss_dssp EEEEEEESC-HHHHHHHHHHHHH-HHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBE
T ss_pred EEEEEEeCC-HHHHHHHHHHHHH-HHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeee
Confidence 478999996 4556666655444 555554566667777777778886 88876 544332 124778999
Q ss_pred ecc--chHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeee
Q psy732 72 LSL--KDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVT 112 (119)
Q Consensus 72 VP~--~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~ 112 (119)
||+ ++|+++++.++++++++ ++.+++|||+||||+|++++
T Consensus 429 vP~~~~~l~~~~~~~~~~~~~~-g~~~~~~gH~gdGnlH~~i~ 470 (560)
T 1e8g_A 429 AKVSGEDAMMQYAVTKKRCQEA-GLDFIGTFTVGMREMHHIVC 470 (560)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHH-TCCCCEEEEECSSCEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc-CCceEEEEEecCCeEEEEec
Confidence 999 99999999999999999 99999999999999999993
No 3
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=99.59 E-value=5.1e-16 Score=122.66 Aligned_cols=105 Identities=8% Similarity=-0.027 Sum_probs=78.5
Q ss_pred ceEEEecCCCchhHHHHHHHHHHHHhhcCcccceeecCCHHHHHHHHHhhhhcH---HHhhcC--------CCceeeEee
Q psy732 3 PFFCCCLGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIV---ESCLKD--------GYIYNYDIS 71 (119)
Q Consensus 3 ~LlvE~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~lW~~R~~~~---~~~~~~--------~~~~~~Dva 71 (119)
.|++|++|+. +.++++++.+.+ +++..+...+..+.++ +++.+|.+|+.++ ++.... +..+++|++
T Consensus 321 ~l~~~~~g~~-~~v~~~~~~i~~-~~~~~~~~~~~~~~~~-~~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 397 (520)
T 1wvf_A 321 NLYAALYGTQ-EQVDVNWKIVTD-VFKKLGKGRIVTQEEA-GDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPV 397 (520)
T ss_dssp EEEEEEEESH-HHHHHHHHHHHH-HHHHHTCCEEEEHHHH-TTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBE
T ss_pred EEEEEEeCCH-HHHHHHHHHHHH-HHHHcCCeEEEecccc-hhhhHHHHHHHhhccCchhhhhccccccCCCceEEeccc
Confidence 3678899964 456666655444 4443334455554444 5689999999877 332221 224779999
Q ss_pred ecc--chHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceee
Q psy732 72 LSL--KDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVV 111 (119)
Q Consensus 72 VP~--~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i 111 (119)
||+ ++|+++++.++++++++ ++++++|||+||||+|+++
T Consensus 398 vp~~~~~l~~~~~~~~~~~~~~-~~~~~~~gh~gdGnlH~~i 438 (520)
T 1wvf_A 398 SEARGSECKKQAAMAKRVLHKY-GLDYVAEFIVAPRDMHHVI 438 (520)
T ss_dssp EESCHHHHHHHHHHHHHHHHHT-TCCCCEEEEECSSEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc-CCCeeEeecccCcceeeee
Confidence 999 99999999999999999 9999999999999999988
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=99.57 E-value=5e-16 Score=124.13 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=78.1
Q ss_pred CceEEEecCCCchhHHHHHHHHHHHHhhcCcccceeecCCHHHHHHHHHhhhhcHHH---hhcC-----CCceeeEeeec
Q psy732 2 DPFFCCCLGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVES---CLKD-----GYIYNYDISLS 73 (119)
Q Consensus 2 ~~LlvE~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~lW~~R~~~~~~---~~~~-----~~~~~~DvaVP 73 (119)
+.||||++|++.+...+.++++++.. .+ ..+..++++.++.|..|++..++ ++.. +..+++|++||
T Consensus 390 ~~llve~~g~~~~~~~~~l~~~~~~~--~g----~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g~~~~~Dvavp 463 (571)
T 1f0x_A 390 HHLLLKMAGDGVGEAKSWLVDYFKQA--EG----DFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALR 463 (571)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHS--SC----EEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEEEEEEEEEECC
T ss_pred eEEEEEEecCcHHHHHHHHHHHHHHc--CC----CeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcCCceEEEEEec
Confidence 35899999986554545555544422 12 12223677888888888877643 3321 12488999999
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeeecC
Q psy732 74 LKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVTVC 114 (119)
Q Consensus 74 ~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~~~ 114 (119)
++++++| +++++.++++ ++...+|||+||||+|++++..
T Consensus 464 ~~~l~~~-~~~~~~l~~~-~~~~~~~GH~g~g~~H~~~~~~ 502 (571)
T 1f0x_A 464 RNDTEWY-EHLPPEIDSQ-LVHKLYYGHFMCYVFHQDYIVK 502 (571)
T ss_dssp TTCSCCS-CCCCHHHHTT-EEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHhHHH-HHHHHHHHhh-CccceeEEEEcCCceEEeeecC
Confidence 9999999 9999999999 8999999999999999999874
No 5
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.40 E-value=4.4e-13 Score=107.39 Aligned_cols=103 Identities=11% Similarity=-0.019 Sum_probs=74.1
Q ss_pred ceEEEecCCCchhHHHHHHHHHHHHhhcCcccceeecCCHHHHHHHHHhhhhcHHHhhcC----CC-ceeeEeeeccchH
Q psy732 3 PFFCCCLGSCVDHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKD----GY-IYNYDISLSLKDF 77 (119)
Q Consensus 3 ~LlvE~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~----~~-~~~~DvaVP~~~l 77 (119)
.|++|++|+. +.++++++.+.+.+.+.+ .... + ++++++|+.|+..+++++.. +. ..++|++||+++|
T Consensus 394 ~llve~~g~~-~~v~~~~~~~~~~~~~~g-~~~~--~---~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l 466 (584)
T 2uuu_A 394 LSIIGFEGPK-KVVDFHRTSVFDILSKNA-AFGL--G---SAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANL 466 (584)
T ss_dssp EEEEEEEECH-HHHHHHHHHHHHHHHTTT-CEEE--E---EESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHH
T ss_pred EEEEEEecCh-HHHHHHHHHHHHHHHHCC-Cccc--h---HHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHH
Confidence 3789999974 456677766666444444 3321 2 25678999999999988653 22 3678999999999
Q ss_pred HHHHHHHHHH----HhcCCCCeEEeeeee---CCCC--cceeeec
Q psy732 78 YSIIPIMKER----LKDQPVVTVCGYGHL---ERLK--DQPVVTV 113 (119)
Q Consensus 78 ~~~i~~~~~~----~~~~p~~~~~~~GH~---GDGN--lH~~i~~ 113 (119)
++++++++++ +.++ ++++.+|||+ |||| +|+++..
T Consensus 467 ~~~~~~~~~~l~~~~~~~-g~~~~~~~h~gH~gd~G~~~~~~~~~ 510 (584)
T 2uuu_A 467 QTLWKDAKQTFVKHFKDQ-GIPAWICAHISHTYTNGVCLYFIFAS 510 (584)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhHHHhc-CCeeEEEEEEEeecCCCcEEEEEecc
Confidence 9999999988 7888 8888776666 5754 5555654
No 6
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=99.24 E-value=2.5e-12 Score=101.77 Aligned_cols=91 Identities=7% Similarity=-0.057 Sum_probs=65.8
Q ss_pred eEEEe-----cCCCchhHHHHHHHHHHHHhhcCccccee-------ecCCHHHHHHHHHhhhhcHHHhhcCCCceeeEee
Q psy732 4 FFCCC-----LGSCVDHDAEKLNTFLQDGIENNIILDAV-------MCSEESKIQKIWPLRERIVESCLKDGYIYNYDIS 71 (119)
Q Consensus 4 LlvE~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~Dva 71 (119)
|++|+ +|++++.++++++.+.+. ++..+..... ++++..+.+ |++|+..++++.. . ..|++
T Consensus 314 llve~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~--W~~R~~~~~a~~~---~-~~Dv~ 386 (524)
T 2exr_A 314 YCLELGLHYRDSDSNSTIDKRVERLIGR-LRFNEGLRFEVDLPYVDFLLRVKRSE--EIAKENGTWETPH---P-WLNLF 386 (524)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHTT-CCCCTTCEEEEEEEHHHHHTTTHHHH--HHHHHTTCSSSCC---C-CEEEE
T ss_pred EEEEEEeecCCCCCHHHHHHHHHHHHHH-HHhCCCeEeecccchhhhhhhhhhHH--HHhhhhcccccCC---C-eeEEE
Confidence 68999 887777777787766653 3433333322 444444433 9999998886643 2 24999
Q ss_pred eccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeeecC
Q psy732 72 LSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVTVC 114 (119)
Q Consensus 72 VP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~~~ 114 (119)
||+++|+++++.+++ ||+||||+|++++++
T Consensus 387 VP~s~l~~~~~~v~~-------------~~~gdgn~h~~i~~~ 416 (524)
T 2exr_A 387 VSKRDIGDFNRTVFK-------------ELVKNGVNGPMLVYP 416 (524)
T ss_dssp EEHHHHHHHHHHCCC-------------CCTTTCCSSCEEEEE
T ss_pred ECHHHHHHHHHHHHH-------------HHhCCCCcceEEEEe
Confidence 999999999987654 799999999999973
No 7
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=98.73 E-value=7.6e-09 Score=81.90 Aligned_cols=106 Identities=5% Similarity=-0.168 Sum_probs=65.1
Q ss_pred ceEEEec----CCCc--hhHHHHHHHHHHHHhhcCccccee-------ecCCHHHHHHHHHhhhhcHHHhhcCCCceeeE
Q psy732 3 PFFCCCL----GSCV--DHDAEKLNTFLQDGIENNIILDAV-------MCSEESKIQKIWPLRERIVESCLKDGYIYNYD 69 (119)
Q Consensus 3 ~LlvE~~----g~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~D 69 (119)
.+++|+. |.+. +.+++.++.+++.+.+.+ ..... ++++ ..+.+|++|+..++++.+ .+. |
T Consensus 327 ~l~ie~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~y~~~~~~--~~~~~w~~r~~~~~~~~~---~~~-d 399 (534)
T 1w1o_A 327 VYSIEATLNYDNATAAAAAVDQELASVLGTLSYVE-GFAFQRDVAYAAFLDR--VHGEEVALNKLGLWRVPH---PWL-N 399 (534)
T ss_dssp EEEEEEEEEC-------CHHHHHHHHHHTTCCCCT-TCEEEEEEEHHHHHTH--HHHHHHHHHHTTCSSSCC---CCE-E
T ss_pred EEEEEEEEecCCCccchhhhHHHHHHHHHhhcccC-CcceeccchHHHHhhh--hhhhHHHHhhccccccCC---ccc-c
Confidence 3578886 7554 556666766665333333 22211 1222 134679999988775543 244 9
Q ss_pred eeeccchHHHHHHHHHHHHhc-CCCCe----EEeeee---------eCCCCcceeeecCC
Q psy732 70 ISLSLKDFYSIIPIMKERLKD-QPVVT----VCGYGH---------LERLKDQPVVTVCG 115 (119)
Q Consensus 70 vaVP~~~l~~~i~~~~~~~~~-~p~~~----~~~~GH---------~GDGNlH~~i~~~~ 115 (119)
++||+++|+++++++.+.+.+ .+... ..++|| +||||+|+++....
T Consensus 400 ~~vP~s~l~~~~~~~~~~l~~~~~~~~~~~~~~~~gh~~~~~~s~v~~dgn~h~~v~~~~ 459 (534)
T 1w1o_A 400 MFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLF 459 (534)
T ss_dssp EEEEGGGHHHHHHHHTTTTTTTSCCCSCEEEEEEEGGGSCTTSSCCCCSSSEEEEEEECC
T ss_pred EEecHHHHHhHHHHHHHHHhhccCCcccEEEeecccccccccccccCCCccEEEEEEEec
Confidence 999999999999999874444 32212 233489 79999999998743
No 8
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=98.35 E-value=2.5e-06 Score=69.11 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHhhhhcHHH--hhc-CC-CceeeEeeeccchHHHHHHHHHHHHhc--------CCCCeEEeeeeeCCCCc
Q psy732 40 SEESKIQKIWPLRERIVES--CLK-DG-YIYNYDISLSLKDFYSIIPIMKERLKD--------QPVVTVCGYGHLERLKD 107 (119)
Q Consensus 40 ~~~~e~~~lW~~R~~~~~~--~~~-~~-~~~~~DvaVP~~~l~~~i~~~~~~~~~--------~p~~~~~~~GH~GDGNl 107 (119)
..+...+..|..|...... ... .+ ...++|++||+++++++++.+++.+.+ +|.+..+.|||++|||.
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~~l~~~~~~~g~~~~~~~~~~~~h~~dg~~ 575 (658)
T 4bby_A 496 AGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGA 575 (658)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEEECSSEE
T ss_pred hhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEEEeccCc
Confidence 4555566666666543322 111 12 136789999999999999998887754 24667889999999996
Q ss_pred ceeee
Q psy732 108 QPVVT 112 (119)
Q Consensus 108 H~~i~ 112 (119)
|+.+.
T Consensus 576 ~l~~~ 580 (658)
T 4bby_A 576 CIYFY 580 (658)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 65544
No 9
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=96.80 E-value=0.00077 Score=51.67 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=36.1
Q ss_pred eeeEeeeccchHHHHHHHHHHHHhc-CCCCeE--EeeeeeCCCCcce
Q psy732 66 YNYDISLSLKDFYSIIPIMKERLKD-QPVVTV--CGYGHLERLKDQP 109 (119)
Q Consensus 66 ~~~DvaVP~~~l~~~i~~~~~~~~~-~p~~~~--~~~GH~GDGNlH~ 109 (119)
+.+|++||+++++++++++++++++ ++..-. +.|||+++|.||+
T Consensus 291 ~~~e~avP~e~~~~~l~~l~~~~~~~~~~~~~v~~r~~~~~~~~Ls~ 337 (422)
T 2vfr_A 291 LQSEYLMPREHALAALHAMDAIRETLAPVLQTCEIRTVAADAQWLSP 337 (422)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHTHHHHGGGEEEEEEEEECCBCSTTCT
T ss_pred EEEEEEEEHHHHHHHHHHHHHHHHhCCCceeeEEEEeecCCccccCC
Confidence 4569999999999999999999887 322111 5699999999998
No 10
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=83.00 E-value=6.2 Score=26.82 Aligned_cols=69 Identities=7% Similarity=0.025 Sum_probs=44.4
Q ss_pred HHHHHHHhhhhcHHHhhcCCC-ceeeEeeeccc-----hHHHHHHHHHHHHhcCCCCeEEeeeee-CCCCcceeeecCCC
Q psy732 44 KIQKIWPLRERIVESCLKDGY-IYNYDISLSLK-----DFYSIIPIMKERLKDQPVVTVCGYGHL-ERLKDQPVVTVCGY 116 (119)
Q Consensus 44 e~~~lW~~R~~~~~~~~~~~~-~~~~DvaVP~~-----~l~~~i~~~~~~~~~~p~~~~~~~GH~-GDGNlH~~i~~~~~ 116 (119)
.++.||..=+.. + ++.+. .-...+++|.+ ++.=+-+++++.+.++ |+.+-+.=|- |++|.|+=|+...+
T Consensus 52 dr~~lWn~vE~~-E--R~na~lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~-G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 52 RPADYWDAADLY-E--RANGRLFKEVEFALPVELTLDQQKALASEFAQHLTGAE-RLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp SHHHHHHHHHHH-S--CTTSCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTT-TCCEEEEEEEETTTEEEEEEEECCB
T ss_pred hHHHHHHHHHhh-c--ccCCeEEEEEEEECCccCCHHHHHHHHHHHHHHHHHhc-CCEEEEEEEcCCCCCceEEEEEeec
Confidence 478899884432 1 23333 24578999976 3333444555566667 7766666687 99999998886543
No 11
>3n4s_A Monopolin complex subunit CSM1; meiosis, rDNA, replication; HET: 1PE; 2.35A {Saccharomyces cerevisiae} PDB: 3n4r_A*
Probab=57.27 E-value=7.6 Score=24.57 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=23.2
Q ss_pred CceeeEeeeccchHHHHHHHHHHHHhc
Q psy732 64 YIYNYDISLSLKDFYSIIPIMKERLKD 90 (119)
Q Consensus 64 ~~~~~DvaVP~~~l~~~i~~~~~~~~~ 90 (119)
.-+.+++++|...++.|..++-+.+.+
T Consensus 90 dYL~d~lsFP~~~l~qFY~Kv~kaLnk 116 (116)
T 3n4s_A 90 EYLFETLSFPLSSLNQFYNKIAKSLNK 116 (116)
T ss_dssp GGGGSCEEEEGGGHHHHHHHHHHHHCC
T ss_pred HhheeeEEecHHHHHHHHHHHHHHhcC
Confidence 357899999999999999999887653
No 12
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=53.29 E-value=11 Score=21.40 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=16.5
Q ss_pred eeEeeeccchHHHHHHHHHH
Q psy732 67 NYDISLSLKDFYSIIPIMKE 86 (119)
Q Consensus 67 ~~DvaVP~~~l~~~i~~~~~ 86 (119)
.-||-||++.+.+|...+++
T Consensus 48 ~vdI~V~p~~~~~f~~~L~~ 67 (78)
T 2gjf_A 48 PVVILIPSDMVEWFLEMLKA 67 (78)
T ss_dssp CEEEEECTTSHHHHHHHHHH
T ss_pred eEEEEECHHHHHHHHHHHHH
Confidence 45999999999988777664
No 13
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=47.97 E-value=18 Score=20.45 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=15.7
Q ss_pred eeEeeeccchHHHHHHHHHH
Q psy732 67 NYDISLSLKDFYSIIPIMKE 86 (119)
Q Consensus 67 ~~DvaVP~~~l~~~i~~~~~ 86 (119)
.-||-||++.+.+|...+++
T Consensus 40 ~~di~V~p~~~~~f~~~L~~ 59 (79)
T 1vjq_A 40 PVVILIPSDMVEWFLEMLKA 59 (79)
T ss_dssp CEEEEECGGGHHHHHHHHHH
T ss_pred cEEEEECHHHHHHHHHHHHH
Confidence 35999999999887666554
No 14
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=47.89 E-value=21 Score=21.95 Aligned_cols=39 Identities=8% Similarity=0.124 Sum_probs=31.9
Q ss_pred ceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeee
Q psy732 65 IYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVT 112 (119)
Q Consensus 65 ~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~ 112 (119)
...-.+.||-+...+.++.+.+.+.. |+.|||-+-+...
T Consensus 58 K~kieivV~d~~v~~vv~~I~~~~~t---------g~~GdGkIfV~~v 96 (112)
T 3mhy_A 58 KVKVEVAVSDDQYEQVVEAIQKAANT---------GRIGDGKIFVLDI 96 (112)
T ss_dssp EEEEEEEECTTTHHHHHHHHHHHHCC---------SSTTCCEEEEEEC
T ss_pred eEEEEEEEchHHHHHHHHHHHHHhcC---------CCCCCeEEEEEEh
Confidence 46789999999999999999987622 8999998766543
No 15
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=47.81 E-value=23 Score=21.93 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=28.0
Q ss_pred ceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeee
Q psy732 65 IYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVT 112 (119)
Q Consensus 65 ~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~ 112 (119)
...-.+.||-+...+.++.+.+.+.. |+.|||-+-+...
T Consensus 61 k~kieivV~d~~ve~vv~~I~~~a~t---------g~~GDGkIFV~~v 99 (115)
T 3l7p_A 61 KVKVEIVAHDAAVEEMITTISQAVKT---------GEVGDGKIFVSPV 99 (115)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCC---------C----CEEEEEEC
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcC---------CCCCCcEEEEEEh
Confidence 46779999999999999999987622 8999998766543
No 16
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=46.91 E-value=19 Score=22.34 Aligned_cols=39 Identities=10% Similarity=-0.011 Sum_probs=32.1
Q ss_pred ceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeee
Q psy732 65 IYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVT 112 (119)
Q Consensus 65 ~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~ 112 (119)
...-.+.||-+...+.++.+.+.+.. |+.|||-+-+...
T Consensus 58 K~kieivV~d~~ve~vv~~I~~~a~T---------g~~GDGkIFV~~V 96 (116)
T 4aff_A 58 KLKLEIVVEDAQVDTVIDKIVAAART---------GENGDGKIFVSPV 96 (116)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCC---------SSTTCEEEEEEEC
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcC---------CCCCCeEEEEEEh
Confidence 46789999999999999999987632 8999998776554
No 17
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=46.82 E-value=55 Score=23.84 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=44.5
Q ss_pred HHHHHhhcCcccceeecCCHHHHHHHHHhhhhcHHHhhcCC----CceeeEeeeccchHHHHHHHHHHHHhcC-CCCeEE
Q psy732 23 FLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESCLKDG----YIYNYDISLSLKDFYSIIPIMKERLKDQ-PVVTVC 97 (119)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~~----~~~~~DvaVP~~~l~~~i~~~~~~~~~~-p~~~~~ 97 (119)
++..+.+.+ ......+.|++|.+.+=++.-.+. +..-+ ..+..+++|-.++-++++.++.+..++. |++.+.
T Consensus 155 ~I~~A~~~g-L~Ti~~v~~~eeA~amA~agpDiI--~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivL 231 (286)
T 2p10_A 155 MIAEAHKLD-LLTTPYVFSPEDAVAMAKAGADIL--VCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIIL 231 (286)
T ss_dssp HHHHHHHTT-CEECCEECSHHHHHHHHHHTCSEE--EEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEE
T ss_pred HHHHHHHCC-CeEEEecCCHHHHHHHHHcCCCEE--EECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 344344444 555667788888877655554332 11122 2356699999999999999999999988 666555
Q ss_pred eee
Q psy732 98 GYG 100 (119)
Q Consensus 98 ~~G 100 (119)
++|
T Consensus 232 c~g 234 (286)
T 2p10_A 232 SHG 234 (286)
T ss_dssp EES
T ss_pred ecC
Confidence 543
No 18
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=46.53 E-value=25 Score=21.94 Aligned_cols=39 Identities=10% Similarity=-0.011 Sum_probs=31.7
Q ss_pred ceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeee
Q psy732 65 IYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVT 112 (119)
Q Consensus 65 ~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~ 112 (119)
...-.+.||-+...+.++.+.+.+.. |+.|||-+=+..+
T Consensus 58 K~kieivV~de~ve~vv~~I~~~a~T---------G~~GDGkIFV~~V 96 (119)
T 3ncq_A 58 KVKLEIVVKDDAVEEVIGLIVNSAFT---------GSPGDGKIFIIPV 96 (119)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCC---------SSTTCCEEEEEEC
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcC---------CCCCCCEEEEEEh
Confidence 46789999999999999999987632 8999998766543
No 19
>1tgl_A Triacyl-glycerol acylhydrolase; carboxylic esterase; 1.90A {Rhizomucor miehei} SCOP: c.69.1.17 PDB: 4tgl_A 5tgl_A* 3tgl_A
Probab=45.97 E-value=20 Score=25.18 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCCCeEEeeee
Q psy732 81 IPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 81 i~~~~~~~~~~p~~~~~~~GH 101 (119)
...++++++++|+.+.+++||
T Consensus 123 ~~~l~~~~~~~p~~~i~~~GH 143 (269)
T 1tgl_A 123 VATVLDQFKQYPSYKVAVTGH 143 (269)
T ss_pred HHHHHHHHHHCCCceEEEEee
Confidence 344555566677899999999
No 20
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=43.97 E-value=29 Score=21.60 Aligned_cols=40 Identities=5% Similarity=0.029 Sum_probs=32.1
Q ss_pred CceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeee
Q psy732 64 YIYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVT 112 (119)
Q Consensus 64 ~~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~ 112 (119)
+...-.+.||-+...+.++.+.+.+.. |+.|||-+=+..+
T Consensus 57 pK~~ieivV~de~ve~Vv~~I~~~a~T---------G~~GDGkIFV~~V 96 (118)
T 3t9z_A 57 QKTKVEVVVSDDAVDEVVEAIVSSART---------GKFGDGRIFVIPV 96 (118)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHHCC---------SSTTCCEEEEEEC
T ss_pred ceEEEEEEEChHHHHHHHHHHHHHhcC---------CCCCCeEEEEEEh
Confidence 356789999999999999999987632 7999998765543
No 21
>1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A 1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A*
Probab=42.11 E-value=27 Score=24.52 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCCeEEeeee
Q psy732 79 SIIPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 79 ~~i~~~~~~~~~~p~~~~~~~GH 101 (119)
++...++++.+++|+.++.+.||
T Consensus 123 ~~~~~~~~~~~~~~~~~i~l~GH 145 (269)
T 1tib_A 123 TLRQKVEDAVREHPDYRVVFTGH 145 (269)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEecC
Confidence 44455566666778899999999
No 22
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=40.75 E-value=5.3 Score=23.80 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhc-CCCCeEEeeeeeCCCCccee
Q psy732 79 SIIPIMKERLKD-QPVVTVCGYGHLERLKDQPV 110 (119)
Q Consensus 79 ~~i~~~~~~~~~-~p~~~~~~~GH~GDGNlH~~ 110 (119)
++++.+.+.+++ +|...+++||-...|..+..
T Consensus 2 ~~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~ 34 (96)
T 1ylq_A 2 GHMKEIKEITKKDVQDAEIYLYGSVVEGDYSIG 34 (96)
T ss_dssp CHHHHHHHHHHHHCTTCEEEEESHHHHCCSSSC
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCC
Confidence 456777777776 45589999999998887654
No 23
>3g7n_A Lipase; hydrolase fold, hydrolase; HET: 1PE; 1.30A {Penicillium expansum}
Probab=40.44 E-value=27 Score=24.61 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCCCeEEeeee
Q psy732 78 YSIIPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 78 ~~~i~~~~~~~~~~p~~~~~~~GH 101 (119)
.++...++++++++|+.++.+.||
T Consensus 108 ~~~~~~l~~~~~~~p~~~i~vtGH 131 (258)
T 3g7n_A 108 DTIITEVKALIAKYPDYTLEAVGH 131 (258)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCeEEEecc
Confidence 355667778888888999999999
No 24
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=39.01 E-value=18 Score=26.87 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=25.5
Q ss_pred eEeeeccchH---------HHHHHHHHHHHhc-CCCC---eEEeee---eeCCCCc
Q psy732 68 YDISLSLKDF---------YSIIPIMKERLKD-QPVV---TVCGYG---HLERLKD 107 (119)
Q Consensus 68 ~DvaVP~~~l---------~~~i~~~~~~~~~-~p~~---~~~~~G---H~GDGNl 107 (119)
-+.-||+.+. .+.++-+.+.+++ + |+ ++.+.| |+|+|-+
T Consensus 167 vTtHipL~~v~~~it~e~i~~~i~~~~~~l~~~f-Gi~~PrIAV~gLNPHAGE~G~ 221 (334)
T 3lxy_A 167 ATTHLPLLAVPGAITQASLHEVITILDNDLKTKF-GITQPQIYVCGLNPHAGEGGH 221 (334)
T ss_dssp SSCSCCGGGHHHHCCHHHHHHHHHHHHHHHHHTS-CCSSCCEEEECSSGGGGGGGT
T ss_pred ecCCCcHHHHhhhCCHHHHHHHHHHHHHHHHHHc-CCCCCCEEEEecCCCCCCCCC
Confidence 3566676554 4555555565665 5 54 899999 9998643
No 25
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=38.76 E-value=22 Score=21.84 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=24.1
Q ss_pred eeccchHHHHHHHHHHHHhcCCCCeEEeeeeeC
Q psy732 71 SLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLE 103 (119)
Q Consensus 71 aVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~G 103 (119)
+.....-...+..+-+.++++|+..+.+.||.-
T Consensus 23 ~~l~~~~~~~L~~~a~~l~~~~~~~i~I~GhtD 55 (123)
T 3td3_A 23 SNIKDQYKPEIAKVAEKLSEYPNATARIEGHTD 55 (123)
T ss_dssp CCCCGGGHHHHHHHHHHHHHSTTCEEEEEECCC
T ss_pred hhcCHHHHHHHHHHHHHHHhCCCceEEEEEEeC
Confidence 333444555677777778888888999999984
No 26
>1tia_A Lipase; hydrolase(carboxylic esterase); 2.10A {Penicillium camemberti} SCOP: c.69.1.17
Probab=37.24 E-value=31 Score=24.40 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCCCeEEeeee
Q psy732 79 SIIPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 79 ~~i~~~~~~~~~~p~~~~~~~GH 101 (119)
++...++++.+++|+.++.+.||
T Consensus 122 ~~~~~l~~~~~~~p~~~i~vtGH 144 (279)
T 1tia_A 122 DIIKELKEVVAQNPNYELVVVGH 144 (279)
T ss_pred HHHHHHHHHHHHCCCCeEEEEec
Confidence 44555666667788899999999
No 27
>1lgy_A Lipase, triacylglycerol lipase; hydrolase (carboxylic ester); 2.20A {Rhizopus niveus} SCOP: c.69.1.17 PDB: 1tic_A
Probab=36.24 E-value=38 Score=23.79 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCCCeEEeeee
Q psy732 79 SIIPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 79 ~~i~~~~~~~~~~p~~~~~~~GH 101 (119)
++...++++.+++|+.++.+.||
T Consensus 122 ~~~~~l~~~~~~~~~~~i~vtGH 144 (269)
T 1lgy_A 122 DYFPVVQEQLTAHPTYKVIVTGH 144 (269)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEecc
Confidence 44555666667788899999999
No 28
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=36.11 E-value=32 Score=20.82 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcC-CCCeEEeeeeeCCCCcce
Q psy732 78 YSIIPIMKERLKDQ-PVVTVCGYGHLERLKDQP 109 (119)
Q Consensus 78 ~~~i~~~~~~~~~~-p~~~~~~~GH~GDGNlH~ 109 (119)
.+.++.+++.++++ +...+++||-...|+.+.
T Consensus 11 ~~~~~~i~~~l~~~~~v~~v~LFGS~ArG~~~~ 43 (114)
T 1no5_A 11 SEELAIVKTILQQLVPDYTVWAFGSRVKGKAKK 43 (114)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEGGGTTTCCCT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeccCCCCCCC
Confidence 34556677777665 457899999999998764
No 29
>1uwc_A Feruloyl esterase A; hydrolase, serine esterase, xylan degradation; HET: NAG FER; 1.08A {Aspergillus niger} SCOP: c.69.1.17 PDB: 1uza_A* 2hl6_A* 2ix9_A* 1usw_A* 2bjh_A*
Probab=35.46 E-value=37 Score=23.79 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCCCeEEeeee
Q psy732 79 SIIPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 79 ~~i~~~~~~~~~~p~~~~~~~GH 101 (119)
++...++++.+++|+.++.+.||
T Consensus 110 ~~~~~l~~~~~~~p~~~i~vtGH 132 (261)
T 1uwc_A 110 QVESLVKQQASQYPDYALTVTGH 132 (261)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEec
Confidence 44556667777788899999999
No 30
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=35.42 E-value=28 Score=21.33 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEeeeeeCC
Q psy732 73 SLKDFYSIIPIMKERLKDQPVVTVCGYGHLER 104 (119)
Q Consensus 73 P~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GD 104 (119)
........+..+-+.++++|+..+.+.||...
T Consensus 17 l~~~~~~~L~~ia~~l~~~p~~~i~I~GhtD~ 48 (118)
T 2hqs_H 17 IRSDFAQMLDAHANFLRSNPSYKVTVEGHADE 48 (118)
T ss_dssp CCGGGHHHHHHHHHHHHHCTTCCEEEEECCCS
T ss_pred cCHHHHHHHHHHHHHHHhCCCcEEEEEEECCC
Confidence 33444566677777777777888999999853
No 31
>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Nitrosomonas europaea} SCOP: d.375.1.1
Probab=32.93 E-value=46 Score=20.65 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=26.7
Q ss_pred cCCCceeeEeeeccchHHHHHHHHHHHHhcC
Q psy732 61 KDGYIYNYDISLSLKDFYSIIPIMKERLKDQ 91 (119)
Q Consensus 61 ~~~~~~~~DvaVP~~~l~~~i~~~~~~~~~~ 91 (119)
+.|..+=+||-||-......+...++-|+..
T Consensus 35 k~G~~MHFDVlv~~~n~eka~~yaK~yL~si 65 (109)
T 2hfq_A 35 KDGHVMHFDVFTDVRDDKKAIEFAKQWLSSI 65 (109)
T ss_dssp SSSCCEEEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEeCCcCHHHHHHHHHHHHHhc
Confidence 3556688999999999999999999999875
No 32
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=32.80 E-value=32 Score=21.62 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=26.9
Q ss_pred eeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCC
Q psy732 67 NYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLER 104 (119)
Q Consensus 67 ~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GD 104 (119)
..|-+.........+..+-+.++++|+..+.+.||.-.
T Consensus 35 ~~~sa~L~~~~~~~L~~ia~~L~~~p~~~i~I~GhtD~ 72 (134)
T 2aiz_P 35 GFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDE 72 (134)
T ss_dssp CTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCS
T ss_pred cCCCceeCHHHHHHHHHHHHHHHHCCCceEEEEEEECC
Confidence 33444445556667777777888887889999999853
No 33
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.71 E-value=18 Score=24.77 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=22.8
Q ss_pred ceeeEeeeccchHHHHHHHHHHHHhcC
Q psy732 65 IYNYDISLSLKDFYSIIPIMKERLKDQ 91 (119)
Q Consensus 65 ~~~~DvaVP~~~l~~~i~~~~~~~~~~ 91 (119)
.+.+++++|...++.|+..+-+.+.+.
T Consensus 156 YL~d~ltFP~~~l~qFY~Kv~kaLnK~ 182 (190)
T 4emc_A 156 YLFETLSFPLSSLNQFYNKIAKSLNKK 182 (190)
T ss_dssp GGGSCEEEETTHHHHHHHHHHHTTC--
T ss_pred HhhceeeecHHHHHHHHHHHHHHhccc
Confidence 578999999999999999998887664
No 34
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=32.71 E-value=31 Score=21.35 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEeeeeeC
Q psy732 75 KDFYSIIPIMKERLKDQPVVTVCGYGHLE 103 (119)
Q Consensus 75 ~~l~~~i~~~~~~~~~~p~~~~~~~GH~G 103 (119)
..-...+..+-+.++++|+..+.+.||.-
T Consensus 37 ~~~~~~L~~ia~~l~~~~~~~i~I~GhtD 65 (129)
T 2kgw_A 37 PADYEILNRVADKLKACPDARVTINGYTD 65 (129)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEeC
Confidence 34445566666666777677888888873
No 35
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=32.44 E-value=25 Score=23.03 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCCeEEeeeee
Q psy732 82 PIMKERLKDQPVVTVCGYGHL 102 (119)
Q Consensus 82 ~~~~~~~~~~p~~~~~~~GH~ 102 (119)
+.+.+.++++ ++..++|||.
T Consensus 129 ~~l~~~~~~~-~~~~vi~GHt 148 (195)
T 1xm7_A 129 EMVREIYFKE-NCDLLIHGHV 148 (195)
T ss_dssp HHHHHHHHHT-TCSEEEECCC
T ss_pred HHHHHHHHHc-CCcEEEECCc
Confidence 5666677778 8999999996
No 36
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=32.42 E-value=29 Score=21.21 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEeeeeeC
Q psy732 74 LKDFYSIIPIMKERLKDQPVVTVCGYGHLE 103 (119)
Q Consensus 74 ~~~l~~~i~~~~~~~~~~p~~~~~~~GH~G 103 (119)
...-...+..+-+.++++|+..+.+.||.-
T Consensus 29 ~~~~~~~L~~~a~~l~~~~~~~i~I~GhtD 58 (123)
T 3oon_A 29 LQKEYKKIDLIAKLLEKFKKNNILIEGHTE 58 (123)
T ss_dssp CGGGHHHHHHHHHHHHHSCSCCEEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHCCCceEEEEEEeC
Confidence 334456677777788888788999999984
No 37
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.94 E-value=7.7 Score=27.06 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHhhhhcHHHhhcCCCce
Q psy732 40 SEESKIQKIWPLRERIVESCLKDGYIY 66 (119)
Q Consensus 40 ~~~~e~~~lW~~R~~~~~~~~~~~~~~ 66 (119)
.+..+..+||.+|+.+.+-++..|+.+
T Consensus 3 ~~~~e~~rl~rirrTv~eMl~DRGY~v 29 (210)
T 3h0g_E 3 AEEKNIVRVFRAWKTAHQLVHDRGYGV 29 (210)
T ss_dssp -CTHHHHHHHGGGSSSSSTTTTTTEEC
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 355678899999999999998888743
No 38
>3o0d_A YALI0A20350P, triacylglycerol lipase; alpha/beta-hydrolase, lipids binding, glycosylation, extracellular, hydrolase; HET: NAG; 1.70A {Yarrowia lipolytica} SCOP: c.69.1.0
Probab=30.47 E-value=52 Score=23.69 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCCCeEEeeee
Q psy732 79 SIIPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 79 ~~i~~~~~~~~~~p~~~~~~~GH 101 (119)
++...++++++++|+.++.+.||
T Consensus 139 ~i~~~l~~~~~~~p~~~i~vtGH 161 (301)
T 3o0d_A 139 QIGPKLDSVIEQYPDYQIAVTGH 161 (301)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEecc
Confidence 45566777778888899999999
No 39
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=29.77 E-value=30 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCCeEEeeeeeCC
Q psy732 82 PIMKERLKDQPVVTVCGYGHLER 104 (119)
Q Consensus 82 ~~~~~~~~~~p~~~~~~~GH~GD 104 (119)
..+.++++++|++..+++||.=.
T Consensus 176 ~~l~~~l~~~~~v~~vl~GH~H~ 198 (274)
T 3d03_A 176 HRLLALVERFPSLTRIFCGHNHS 198 (274)
T ss_dssp HHHHHHHHHCTTEEEEEECSSSS
T ss_pred HHHHHHHHhCCCceEEEeCCCCC
Confidence 34556677776799999999643
No 40
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=29.55 E-value=33 Score=23.66 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCCeEEeeeee
Q psy732 82 PIMKERLKDQPVVTVCGYGHL 102 (119)
Q Consensus 82 ~~~~~~~~~~p~~~~~~~GH~ 102 (119)
+.+.+++.+++++..+++||.
T Consensus 246 ~~~~~ll~~~~~v~~~~~GH~ 266 (322)
T 2nxf_A 246 EAVLSVLRSHQSVLCFIAGHD 266 (322)
T ss_dssp HHHHHHHHTCTTEEEEEECSC
T ss_pred HHHHHHHhcCCCeEEEEcCCc
Confidence 456677777766888999996
No 41
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}
Probab=28.82 E-value=42 Score=20.66 Aligned_cols=13 Identities=8% Similarity=-0.202 Sum_probs=8.9
Q ss_pred eeeCCCCcceeeec
Q psy732 100 GHLERLKDQPVVTV 113 (119)
Q Consensus 100 GH~GDGNlH~~i~~ 113 (119)
||.|+| -|+.+..
T Consensus 38 ~~~G~g-sHf~v~I 50 (107)
T 2dhm_A 38 VPAGSE-SHFKVVL 50 (107)
T ss_dssp SCCCSC-CCEEEEE
T ss_pred CCCCCC-ceEEEEE
Confidence 567765 4887764
No 42
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=28.43 E-value=48 Score=21.08 Aligned_cols=33 Identities=15% Similarity=0.002 Sum_probs=24.1
Q ss_pred eccchHHHHHHHHHHHHhcCCCCeEEeeeeeCC
Q psy732 72 LSLKDFYSIIPIMKERLKDQPVVTVCGYGHLER 104 (119)
Q Consensus 72 VP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GD 104 (119)
.....-...+..+-+.++++|+..+.+.||...
T Consensus 44 ~L~~~~~~~L~~ia~~L~~~~~~~i~I~GhtD~ 76 (149)
T 2k1s_A 44 TLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDS 76 (149)
T ss_dssp CBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHHhCCCceEEEEEEcCC
Confidence 334445566777777788887889999999853
No 43
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=28.33 E-value=48 Score=20.81 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHHHhcCC-CCeEEeeeeeCC
Q psy732 73 SLKDFYSIIPIMKERLKDQP-VVTVCGYGHLER 104 (119)
Q Consensus 73 P~~~l~~~i~~~~~~~~~~p-~~~~~~~GH~GD 104 (119)
....-...+..+-+.+..+| ...+.+.||.-.
T Consensus 15 l~~~~~~~L~~ia~~l~~~p~~~~i~I~GhtD~ 47 (138)
T 3cyp_B 15 INQDMMLYIERIAKIIQKLPKRVHINVRGFTDD 47 (138)
T ss_dssp CCHHHHHHHHHHHHHHTTSCTTCEEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 34455667778888888888 899999999853
No 44
>3ngm_A Extracellular lipase; secret lipase, hydrolase; 2.80A {Gibberella zeae}
Probab=28.21 E-value=65 Score=23.52 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEeeee
Q psy732 78 YSIIPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 78 ~~~i~~~~~~~~~~p~~~~~~~GH 101 (119)
.++...++++++++|+.++++.||
T Consensus 120 ~~l~~~l~~~~~~~p~~~i~vtGH 143 (319)
T 3ngm_A 120 AAATAAVAKARKANPSFKVVSVGH 143 (319)
T ss_dssp HHHHHHHHHHHHSSTTCEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCceEEeec
Confidence 355667777778888999999999
No 45
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=26.35 E-value=34 Score=23.51 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCCeEEeeeee
Q psy732 79 SIIPIMKERLKDQPVVTVCGYGHL 102 (119)
Q Consensus 79 ~~i~~~~~~~~~~p~~~~~~~GH~ 102 (119)
.+.+.+.++++++ ++..+++||.
T Consensus 200 ~~~~~l~~~l~~~-~v~~~l~GH~ 222 (313)
T 1ute_A 200 CLVKQLLPLLTTH-KVTAYLCGHD 222 (313)
T ss_dssp HHHHHTHHHHHHT-TCSEEEECSS
T ss_pred HHHHHHHHHHHHc-CCcEEEECCh
Confidence 3456777788888 8999999995
No 46
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=26.34 E-value=17 Score=25.46 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhhcHHHhhcCCCc
Q psy732 42 ESKIQKIWPLRERIVESCLKDGYI 65 (119)
Q Consensus 42 ~~e~~~lW~~R~~~~~~~~~~~~~ 65 (119)
+.+..+||++|+.+.+-++..|+.
T Consensus 6 ~~e~~rl~r~rrTv~eMl~DRGY~ 29 (215)
T 1dzf_A 6 ERNISRLWRAFRTVKEMVKDRGYF 29 (215)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Confidence 356678999999999999888874
No 47
>3uue_A LIP1, secretory lipase (family 3); LID-domain, hydrolase; HET: NAG BMA MAN; 1.45A {Malassezia globosa} PDB: 3uuf_A*
Probab=26.17 E-value=45 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCCeEEeeee
Q psy732 78 YSIIPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 78 ~~~i~~~~~~~~~~p~~~~~~~GH 101 (119)
.+++..++++++++|+.++.+.||
T Consensus 122 ~~~~~~l~~~~~~~p~~~l~vtGH 145 (279)
T 3uue_A 122 DDIFTAVKKYKKEKNEKRVTVIGH 145 (279)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEccc
Confidence 345666777777778899999999
No 48
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Probab=25.47 E-value=59 Score=24.79 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=30.4
Q ss_pred eeeEeeeccc--------hHHHHHHHHHHHHhcCCCCeEEeeeeeCC
Q psy732 66 YNYDISLSLK--------DFYSIIPIMKERLKDQPVVTVCGYGHLER 104 (119)
Q Consensus 66 ~~~DvaVP~~--------~l~~~i~~~~~~~~~~p~~~~~~~GH~GD 104 (119)
+--|.=||+. ||...+..++.++++ |.++++..|.|-
T Consensus 18 vRvD~NVPl~~g~Itdd~RI~aalpTI~~ll~~--gakvil~SHlGR 62 (394)
T 1php_A 18 CRVDFNVPMEQGAITDDTRIRAALPTIRYLIEH--GAKVILASHLGR 62 (394)
T ss_dssp EECCCCCCEETTEESCCHHHHHHHHHHHHHHHT--TCEEEEECCCSC
T ss_pred EEecCCCcccCCccCChHHHHHHHHHHHHHHHC--CCEEEEEecCCC
Confidence 4567777875 488899999999877 889999999993
No 49
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=25.15 E-value=60 Score=24.77 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=30.3
Q ss_pred eeeEeeeccc--------hHHHHHHHHHHHHhcCCCCeEEeeeeeCC
Q psy732 66 YNYDISLSLK--------DFYSIIPIMKERLKDQPVVTVCGYGHLER 104 (119)
Q Consensus 66 ~~~DvaVP~~--------~l~~~i~~~~~~~~~~p~~~~~~~GH~GD 104 (119)
+--|.=||+. ||...+..++.++++ |.++++..|.|-
T Consensus 17 vRvD~NVPl~~g~Itdd~RI~a~lpTI~~ll~~--gakvil~SHlGR 61 (398)
T 1vpe_A 17 MRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQ--GAKVILLSHLGR 61 (398)
T ss_dssp EECCCCCCEETTEESCCHHHHHHHHHHHHHHHT--TCEEEEECCCSC
T ss_pred EEecCCCcccCCccCChHHHHHHHHHHHHHHHC--CCEEEEEccCCC
Confidence 4567777775 488899999999877 889999999983
No 50
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=25.14 E-value=39 Score=23.59 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCCCeEEeeeee
Q psy732 82 PIMKERLKDQPVVTVCGYGHL 102 (119)
Q Consensus 82 ~~~~~~~~~~p~~~~~~~GH~ 102 (119)
..+.++++++ ++..+++||.
T Consensus 201 ~~l~~~l~~~-~v~~v~~GH~ 220 (330)
T 3ib7_A 201 AALGRVLRGT-DVRAILAGHL 220 (330)
T ss_dssp HHHHHHHTTS-SEEEEEECSS
T ss_pred HHHHHHHhcc-CceEEEECCC
Confidence 3466777788 8999999996
No 51
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=25.13 E-value=36 Score=21.91 Aligned_cols=19 Identities=26% Similarity=0.615 Sum_probs=14.1
Q ss_pred HHHHHHhcCCCCeEEeeeee
Q psy732 83 IMKERLKDQPVVTVCGYGHL 102 (119)
Q Consensus 83 ~~~~~~~~~p~~~~~~~GH~ 102 (119)
.+.+.+++. ++..+++||.
T Consensus 96 ~l~~~~~~~-~~d~vi~GHt 114 (176)
T 3ck2_A 96 KLDYWAQEE-EAAICLYGHL 114 (176)
T ss_dssp HHHHHHHHT-TCSEEECCSS
T ss_pred HHHHHHHhc-CCCEEEECCc
Confidence 345555667 8999999995
No 52
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=25.10 E-value=96 Score=18.97 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=20.8
Q ss_pred eeccc---hHHHHHHHHHHHHhcCCCCeEE
Q psy732 71 SLSLK---DFYSIIPIMKERLKDQPVVTVC 97 (119)
Q Consensus 71 aVP~~---~l~~~i~~~~~~~~~~p~~~~~ 97 (119)
.+|+. .+.++++++.+.+++. |++..
T Consensus 22 v~Plg~~~svs~~Va~~i~vi~~s-GL~y~ 50 (106)
T 1vk8_A 22 VVPAVEDGRLHEVIDRAIEKISSW-GMKYE 50 (106)
T ss_dssp EEESSCGGGHHHHHHHHHHHHHTT-CSCEE
T ss_pred EEeCCCCCchHHHHHHHHHHHHHc-CCCeE
Confidence 34654 8999999999999988 77664
No 53
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=24.61 E-value=90 Score=18.93 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=19.8
Q ss_pred eccc---hHHHHHHHHHHHHhcCCCCeEE
Q psy732 72 LSLK---DFYSIIPIMKERLKDQPVVTVC 97 (119)
Q Consensus 72 VP~~---~l~~~i~~~~~~~~~~p~~~~~ 97 (119)
+|+. .+.++++.+.+.+++. |++..
T Consensus 10 ~Plg~~~svs~~Va~~i~vl~~s-Gl~y~ 37 (104)
T 2ibo_A 10 LPLVQGIDRIAVIDQVIAYLQTQ-EVTMV 37 (104)
T ss_dssp EECSCSHHHHHHHHHHHHHHHHS-SSEEE
T ss_pred EcCCCCCcHHHHHHHHHHHHHHc-CCCeE
Confidence 4664 8889999999999887 77664
No 54
>3cki_B Metalloproteinase inhibitor 3; extra-cellular matrix, catalytic zinc, SA-SB loop, alternative splicing, cleavage on PAIR of basic residues; 2.30A {Homo sapiens}
Probab=24.43 E-value=34 Score=21.19 Aligned_cols=18 Identities=11% Similarity=-0.271 Sum_probs=15.7
Q ss_pred CCeEEeeeeeCCCCccee
Q psy732 93 VVTVCGYGHLERLKDQPV 110 (119)
Q Consensus 93 ~~~~~~~GH~GDGNlH~~ 110 (119)
+-...+.|+.-||++|++
T Consensus 76 ~~~YLI~G~~~dg~l~i~ 93 (121)
T 3cki_B 76 KYQYLLTGRVYDGKMYTG 93 (121)
T ss_dssp CCCEEEEEEECSSCEECC
T ss_pred CeEEEEEEEecCCEEEEe
Confidence 357889999999999987
No 55
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=23.25 E-value=42 Score=19.38 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=12.5
Q ss_pred eeeEeeeccchHHHHHH
Q psy732 66 YNYDISLSLKDFYSIIP 82 (119)
Q Consensus 66 ~~~DvaVP~~~l~~~i~ 82 (119)
+.+|++||.+.+.+-..
T Consensus 11 ~~~~~svpR~~vY~~Y~ 27 (76)
T 1dp7_P 11 TAEGVSLPRSTLYNHYL 27 (76)
T ss_dssp EEEEEEEEHHHHHHHHH
T ss_pred ECCCceechHHHHHHHH
Confidence 56799999998855433
No 56
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=23.22 E-value=69 Score=24.34 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=30.0
Q ss_pred eeeEeeeccc--------hHHHHHHHHHHHHhcCCCCeEEeeeeeC
Q psy732 66 YNYDISLSLK--------DFYSIIPIMKERLKDQPVVTVCGYGHLE 103 (119)
Q Consensus 66 ~~~DvaVP~~--------~l~~~i~~~~~~~~~~p~~~~~~~GH~G 103 (119)
+--|.=||+. ||...+..++.++++ |.++++..|.|
T Consensus 18 vRvD~NVP~~~g~Itdd~RI~aalpTI~~ll~~--gakvil~SHlG 61 (387)
T 1zmr_A 18 IRADLNVPVKDGKVTSDARIRASLPTIELALKQ--GAKVMVTSHLG 61 (387)
T ss_dssp EECCCCCCEETTEESCCHHHHHHHHHHHHHHHT--TCEEEEECCCS
T ss_pred EEecCCCcccCCccCChHHHHHHHHHHHHHHHC--CCEEEEEccCC
Confidence 4567777775 488889999999877 88999999999
No 57
>4hl9_A Antibiotic biosynthesis monooxygenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.93A {Rhodospirillum rubrum}
Probab=23.09 E-value=69 Score=19.63 Aligned_cols=41 Identities=12% Similarity=0.013 Sum_probs=28.6
Q ss_pred eeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeeecCC
Q psy732 66 YNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVTVCG 115 (119)
Q Consensus 66 ~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~~~~ 115 (119)
+.--+-|-+++..+|.+.++++.+.. ..-.||+.+.+..+.
T Consensus 26 viA~~~vkP~~~d~~~~~~~~l~~~t---------r~EpGcl~y~l~~d~ 66 (118)
T 4hl9_A 26 VIAQDFIKPEAIDIVLPLYRELVEKT---------RQEPLCLAYDLFVDQ 66 (118)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHHH---------HTSTTCCEEEEEEET
T ss_pred EEEEEEECchhHHHHHHHHHHHHHHH---------hcCCCcEEEEEEEcC
Confidence 45678889999999999999887664 234555555555443
No 58
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=22.89 E-value=70 Score=24.54 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=30.6
Q ss_pred eeeEeeeccc--------hHHHHHHHHHHHHhcCCCCeEEeeeeeCC
Q psy732 66 YNYDISLSLK--------DFYSIIPIMKERLKDQPVVTVCGYGHLER 104 (119)
Q Consensus 66 ~~~DvaVP~~--------~l~~~i~~~~~~~~~~p~~~~~~~GH~GD 104 (119)
+--|.=||+. ||...+-.++.++++ |.++++..|.|.
T Consensus 17 vRvD~NVPl~~g~Itdd~RI~aalpTI~~ll~~--Gakvil~SHlGR 61 (415)
T 16pk_A 17 IRVDFNVPVKNGKITNDYRIRSALPTLKKVLTE--GGSCVLMSHLGR 61 (415)
T ss_dssp EEECCCCCEETTEESCCHHHHHHHHHHHHHHHT--TCEEEEECCCSC
T ss_pred EEeccCCcccCCccCchHHHHHHHHHHHHHHHC--CCEEEEEecCCC
Confidence 4567778875 488899999999887 889999999993
No 59
>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}
Probab=22.67 E-value=77 Score=17.77 Aligned_cols=33 Identities=12% Similarity=-0.063 Sum_probs=21.3
Q ss_pred eeEeeeccchHHHHHHHHHHHHhc---CCCCeEEee
Q psy732 67 NYDISLSLKDFYSIIPIMKERLKD---QPVVTVCGY 99 (119)
Q Consensus 67 ~~DvaVP~~~l~~~i~~~~~~~~~---~p~~~~~~~ 99 (119)
.--+.|.+++..+|.+.++++... .||+....+
T Consensus 8 ~~~~~vkpg~~~~~~~~~~~~~~~~~~epG~l~~~~ 43 (94)
T 2fb0_A 8 NVFVRVNETNREKAIEAAKELTACSLKEEGCIAYDT 43 (94)
T ss_dssp EEEEECCTTTHHHHHHHHHHHHHHHTTSTTEEEEEE
T ss_pred EEEEEECcccHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 345677888888888888776543 256544433
No 60
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=22.64 E-value=59 Score=22.43 Aligned_cols=35 Identities=6% Similarity=-0.203 Sum_probs=23.6
Q ss_pred eccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCc
Q psy732 72 LSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKD 107 (119)
Q Consensus 72 VP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNl 107 (119)
-|+.....|++.+...-....++++.+|| .||.+.
T Consensus 101 e~Pdna~~F~~~L~~~~~~l~~~~~aVfG-lGdssY 135 (219)
T 3hr4_A 101 DCPGNGEKLKKSLFMLKELNNKFRYAVFG-LGSSMY 135 (219)
T ss_dssp BCCGGGHHHHHHHHHCCCCSSCCEEEEEE-EECTTS
T ss_pred cCCHHHHHHHHHHHhcchhhcCCEEEEEe-CCCcch
Confidence 46677888888777532112378899998 677663
No 61
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=22.51 E-value=46 Score=21.77 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=21.0
Q ss_pred eeEeeeccchHHHHHHHHHHHHhcC
Q psy732 67 NYDISLSLKDFYSIIPIMKERLKDQ 91 (119)
Q Consensus 67 ~~DvaVP~~~l~~~i~~~~~~~~~~ 91 (119)
..=+.+|.+-+.+|.+.+.++++.+
T Consensus 41 rs~I~lp~~~~~efrd~L~~~ie~~ 65 (146)
T 3k44_A 41 RSQIYLALSTAAEFRDHLSSFSDYY 65 (146)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEhhHHHHHHHHHHHHHHHH
Confidence 3468999999999999999887764
No 62
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=22.39 E-value=92 Score=18.80 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=31.7
Q ss_pred ceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeee
Q psy732 65 IYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVT 112 (119)
Q Consensus 65 ~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~ 112 (119)
...--+.||-+...+.++.+++.+.. |+.|||-+-+...
T Consensus 60 K~~ieivv~d~~v~~vv~~I~~~~~t---------g~~GdGkiFV~pV 98 (114)
T 2gw8_A 60 KIKIELVLADDAVERAIDVIVEVARS---------GKIGDGKIFVLPV 98 (114)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHCC---------SSTTCCEEEEEEE
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhCC---------CCCCCEEEEEEEh
Confidence 46779999999999999999988733 6899998766554
No 63
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=22.32 E-value=74 Score=24.21 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=29.8
Q ss_pred eeeEeeeccc--------hHHHHHHHHHHHHhcCCCCeEEeeeeeC
Q psy732 66 YNYDISLSLK--------DFYSIIPIMKERLKDQPVVTVCGYGHLE 103 (119)
Q Consensus 66 ~~~DvaVP~~--------~l~~~i~~~~~~~~~~p~~~~~~~GH~G 103 (119)
+--|.=||+. ||...+..++.++++ |.++++..|.|
T Consensus 16 vRvD~NVPl~~g~Itdd~RI~aalpTI~~ll~~--gakvil~SHlG 59 (390)
T 1v6s_A 16 VRVDYNVPVQDGKVQDETRILESLPTLRHLLAG--GASLVLLSHLG 59 (390)
T ss_dssp EECCCCCCEETTEESCCHHHHHHHHHHHHHHHT--TCEEEEECCCS
T ss_pred EEecCCCcccCCccCChHHHHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 4467777775 588889999999877 88999999999
No 64
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=22.13 E-value=48 Score=22.38 Aligned_cols=20 Identities=0% Similarity=-0.180 Sum_probs=14.3
Q ss_pred HHHHHHhcCCCCeEEeeeee
Q psy732 83 IMKERLKDQPVVTVCGYGHL 102 (119)
Q Consensus 83 ~~~~~~~~~p~~~~~~~GH~ 102 (119)
.+.++++++|+...+++||.
T Consensus 157 ~l~~~~~~~~~~~~vi~GHt 176 (252)
T 1nnw_A 157 YYEAIMRPVKDYEMLIVASP 176 (252)
T ss_dssp HHHHHHGGGTTSSEEEESTT
T ss_pred HHHHHHhcCCCCCEEEECCc
Confidence 44555555557899999995
No 65
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=22.00 E-value=1.1e+02 Score=19.33 Aligned_cols=13 Identities=15% Similarity=-0.166 Sum_probs=8.6
Q ss_pred eeeCCCCcceeeec
Q psy732 100 GHLERLKDQPVVTV 113 (119)
Q Consensus 100 GH~GDGNlH~~i~~ 113 (119)
||.|+| -|+.+..
T Consensus 55 ~~~G~g-sHf~v~I 67 (123)
T 1v60_A 55 VPAGSE-THFRVAV 67 (123)
T ss_dssp CCTTCC-SEEEEEE
T ss_pred CCCCCC-CeEEEEE
Confidence 566765 4887764
No 66
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=21.93 E-value=26 Score=20.79 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=12.3
Q ss_pred eCCC------CcceeeecCCCC
Q psy732 102 LERL------KDQPVVTVCGYG 117 (119)
Q Consensus 102 ~GDG------NlH~~i~~~~~~ 117 (119)
-||| |-|+|.++++|-
T Consensus 62 WGdGd~tLFhN~~~N~lp~gyE 83 (85)
T 1v54_G 62 WGDGNHTFFHNPRVNPLPTGYE 83 (85)
T ss_dssp STTSSSCTTCCTTTCCBTTBCC
T ss_pred CCCCCcCcccCCCcCCCCCCCC
Confidence 4788 788888887764
No 67
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=21.88 E-value=74 Score=22.34 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=29.8
Q ss_pred eEeeeccchHHHHHHHHHHHHhcCCCCe--EEeeeeeCC
Q psy732 68 YDISLSLKDFYSIIPIMKERLKDQPVVT--VCGYGHLER 104 (119)
Q Consensus 68 ~DvaVP~~~l~~~i~~~~~~~~~~p~~~--~~~~GH~GD 104 (119)
--++++.+-+..++.++-+-+.++ |++ +++-||-|.
T Consensus 86 GTisl~~~tl~~~l~di~~sl~~~-G~rrlvivNgHGGN 123 (254)
T 3lub_A 86 FCIHTRYATQQAILEDIVSSLHVQ-GFRKLLILSGHGGN 123 (254)
T ss_dssp TCCBCCHHHHHHHHHHHHHHHHHT-TCCEEEEEESCTTC
T ss_pred CeEEeCHHHHHHHHHHHHHHHHHc-CCCEEEEEeCCchH
Confidence 358899999999999999988888 776 567799873
No 68
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=21.79 E-value=52 Score=24.14 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCCCeEEeeeee
Q psy732 79 SIIPIMKERLKDQPVVTVCGYGHL 102 (119)
Q Consensus 79 ~~i~~~~~~~~~~p~~~~~~~GH~ 102 (119)
.+.+.+..++.++ ++..++.||.
T Consensus 212 ~l~~~l~~ll~~~-~VdlvlsGH~ 234 (342)
T 3tgh_A 212 YLAYYLLPLLKDA-EVDLYISGHD 234 (342)
T ss_dssp HHHHHTHHHHHHT-TCCEEEECSS
T ss_pred HHHHHHHHHHHHc-CCCEEEECCC
Confidence 4567888899999 9999999995
No 69
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=21.78 E-value=1.3e+02 Score=18.05 Aligned_cols=40 Identities=8% Similarity=0.051 Sum_probs=32.2
Q ss_pred CceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeee
Q psy732 64 YIYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVT 112 (119)
Q Consensus 64 ~~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~ 112 (119)
+...--+.||-+...+.++.+++.+.. |+.|||-+-+...
T Consensus 57 ~k~~ieivv~d~~v~~vv~~I~~~~~t---------g~~GdGkiFV~pV 96 (112)
T 2eg2_A 57 PKVKIEVVVRDEDVEKVVETIVKTAQT---------GRVGDGKIFIIPV 96 (112)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHHCC---------SSTTCCEEEEEEC
T ss_pred cEEEEEEEEcHHHHHHHHHHHHHHhcC---------CCCCCEEEEEEEh
Confidence 356789999999999999999988733 6889998766544
No 70
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=21.76 E-value=97 Score=18.80 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=31.6
Q ss_pred ceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeee
Q psy732 65 IYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVT 112 (119)
Q Consensus 65 ~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~ 112 (119)
...--+.||-+...+.++.+++.+.. |+.|||-+-+...
T Consensus 62 k~~ieivv~de~v~~vv~~I~~~~~t---------g~~GdGkiFV~pV 100 (116)
T 2ns1_B 62 KVKIDVAIADDQLDEVIDIVSKAAYT---------GKIGDGKIFVAEL 100 (116)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHCC---------SSTTCCEEEEEEE
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHhcC---------CCCCCEEEEEEEh
Confidence 46778999999999999999987643 5889998766554
No 71
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=21.49 E-value=63 Score=22.56 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=17.3
Q ss_pred eccchHHHHHHHHHHHHhcCCCCeEEeeee
Q psy732 72 LSLKDFYSIIPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 72 VP~~~l~~~i~~~~~~~~~~p~~~~~~~GH 101 (119)
.+...+.++...++++++++ ++..++-.|
T Consensus 76 l~~~~~~~~a~~l~~l~~~~-~~~liInd~ 104 (243)
T 3o63_A 76 LQARDELAACEILADAAHRY-GALFAVNDR 104 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHHT-TCEEEEESC
T ss_pred CCHHHHHHHHHHHHHHHHhh-CCEEEEeCH
Confidence 34445555666666666666 666666444
No 72
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=21.49 E-value=68 Score=23.28 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=19.6
Q ss_pred eEEEecCCCchhHHHHHHHHHHHHhhcC
Q psy732 4 FFCCCLGSCVDHDAEKLNTFLQDGIENN 31 (119)
Q Consensus 4 LlvE~~g~~~~~~~~~~~~~~~~~~~~~ 31 (119)
+||+++|.+.+++.+.++.+.+.+.+.+
T Consensus 274 ~lvn~~ga~~~~v~~~~~~v~~~v~~~~ 301 (326)
T 1hsk_A 274 FMVNVDNGTATDYENLIHYVQKTVKEKF 301 (326)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhh
Confidence 7899999766667777766666555543
No 73
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=21.34 E-value=49 Score=20.53 Aligned_cols=30 Identities=3% Similarity=-0.065 Sum_probs=22.0
Q ss_pred ceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEee
Q psy732 65 IYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGY 99 (119)
Q Consensus 65 ~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~ 99 (119)
.-.-++++|.+..+++++++-+. |++.+++
T Consensus 59 vDlavi~~p~~~v~~~v~e~~~~-----g~k~v~~ 88 (122)
T 3ff4_A 59 VDTVTLYINPQNQLSEYNYILSL-----KPKRVIF 88 (122)
T ss_dssp CCEEEECSCHHHHGGGHHHHHHH-----CCSEEEE
T ss_pred CCEEEEEeCHHHHHHHHHHHHhc-----CCCEEEE
Confidence 33568899999999999887764 5555443
No 74
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=21.26 E-value=54 Score=24.73 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCCeEEeeeeeCCCCccee
Q psy732 82 PIMKERLKDQPVVTVCGYGHLERLKDQPV 110 (119)
Q Consensus 82 ~~~~~~~~~~p~~~~~~~GH~GDGNlH~~ 110 (119)
..+.+.+++. |...+..||-+|||=+..
T Consensus 97 ~~L~~~A~~~-G~~~IatG~~~d~nDq~~ 124 (400)
T 1kor_A 97 KHLVRIAEEE-GAEAIAHGATGKGNDQVR 124 (400)
T ss_dssp HHHHHHHHHH-TCSEEECCCCTTSSHHHH
T ss_pred HHHHHHHHHc-CCCEEEECCCCCcccHHH
Confidence 4556666777 999999999999886543
No 75
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043}
Probab=21.26 E-value=1e+02 Score=19.13 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEeeee
Q psy732 74 LKDFYSIIPIMKERLKDQPVVTVCGYGH 101 (119)
Q Consensus 74 ~~~l~~~i~~~~~~~~~~p~~~~~~~GH 101 (119)
...+.++++.+.+.++.. +-+++++||
T Consensus 55 ~~~~~~~~~~~~~~~~~~-~~~~~l~G~ 81 (191)
T 3bdv_A 55 QADLDRWVLAIRRELSVC-TQPVILIGH 81 (191)
T ss_dssp SCCHHHHHHHHHHHHHTC-SSCEEEEEE
T ss_pred CcCHHHHHHHHHHHHHhc-CCCeEEEEE
Confidence 456888899999998888 678899999
No 76
>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}
Probab=21.11 E-value=72 Score=19.25 Aligned_cols=25 Identities=8% Similarity=-0.009 Sum_probs=19.6
Q ss_pred eeeEeeeccchHHHHHHHHHHHHhc
Q psy732 66 YNYDISLSLKDFYSIIPIMKERLKD 90 (119)
Q Consensus 66 ~~~DvaVP~~~l~~~i~~~~~~~~~ 90 (119)
+.--+.|.+++..+|.+.+++....
T Consensus 22 via~~~vkpg~~~~~~~~l~~~~~~ 46 (119)
T 3e8o_A 22 SHGTLSASAEHAAHLRQLLVHIAQA 46 (119)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHH
Confidence 5566778889999998888877654
No 77
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=21.02 E-value=2.3e+02 Score=20.09 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=41.2
Q ss_pred eecCCHHHHHHHHHhhhhcHHHhhcCCCceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCC
Q psy732 37 VMCSEESKIQKIWPLRERIVESCLKDGYIYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLK 106 (119)
Q Consensus 37 ~~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGN 106 (119)
++|.|.+-++++|++=++ ..+.-=++=..+...+.++++++..+..|+.-.+..| +||=|
T Consensus 19 vLA~d~~NAkei~eAaeG---------hv~vGVlskny~tve~av~~mk~y~~~~~~avSVGLG-aGDp~ 78 (249)
T 3m0z_A 19 VLAGSKDNAREIYDAAEG---------HVLVGVLSKNYPDVASAVVDMRDYAKLIDNALSVGLG-AGDPN 78 (249)
T ss_dssp EECSSHHHHHHHHHHTTT---------CEEEEEEGGGSSSHHHHHHHHHHHHHHTTTCEEEECS-SSCGG
T ss_pred eecCChhhHHHHHHHhcC---------cEEEEEEeCCCCCHHHHHHHHHHHHHhCCCceEEecC-CCCHH
Confidence 567888888888887653 2333334445566788888888888887445666677 77754
No 78
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=20.99 E-value=40 Score=17.86 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHHhhhhcH
Q psy732 39 CSEESKIQKIWPLRERIV 56 (119)
Q Consensus 39 a~~~~e~~~lW~~R~~~~ 56 (119)
+--++++..+|.+|..+.
T Consensus 26 ~LPp~qR~qI~~LR~q~~ 43 (49)
T 2j8p_A 26 MLPPEQRQSILILKEQIQ 43 (49)
T ss_dssp TSCHHHHTHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHH
Confidence 347899999999998653
No 79
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=20.99 E-value=49 Score=21.65 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=25.5
Q ss_pred eEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeC
Q psy732 68 YDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLE 103 (119)
Q Consensus 68 ~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~G 103 (119)
.|-+.........+..+-+.++++|+..+.+.||.-
T Consensus 60 ~~sa~L~~~~~~~L~~la~~l~~~~~~~i~I~GhTD 95 (169)
T 3ldt_A 60 FSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTD 95 (169)
T ss_dssp -CCHHHHHHHCHHHHHHHHHHTTCTTSCEEEEEECT
T ss_pred CCCceeCHHHHHHHHHHHHHHHhCCCCeEEEEeEeC
Confidence 344444445556677777888888888999999984
No 80
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=20.50 E-value=89 Score=18.59 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEeeeee--CCCCcc
Q psy732 74 LKDFYSIIPIMKERLKDQPVVTVCGYGHL--ERLKDQ 108 (119)
Q Consensus 74 ~~~l~~~i~~~~~~~~~~p~~~~~~~GH~--GDGNlH 108 (119)
.......++.+.++++++ ++..++.|-= .||..+
T Consensus 33 ~~~~~~~~~~l~~li~e~-~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 33 RKTLEEDVEALLDFVRRE-GLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp CCCHHHHHHHHHHHHHHH-TCCEEEEECCCCCCSSSC
T ss_pred ccCcHHHHHHHHHHHHHc-CCCEEEEeeccCCCCCcC
Confidence 445678889999999999 8888888832 245444
No 81
>3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum}
Probab=20.42 E-value=1.1e+02 Score=19.31 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHH------hcCCCCeEEeeeee
Q psy732 74 LKDFYSIIPIMKERL------KDQPVVTVCGYGHL 102 (119)
Q Consensus 74 ~~~l~~~i~~~~~~~------~~~p~~~~~~~GH~ 102 (119)
...+.++.+.+.+.+ +.. + +++++||-
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~G~S 92 (245)
T 3e0x_A 60 PSTVYGYIDNVANFITNSEVTKHQ-K-NITLIGYS 92 (245)
T ss_dssp CSSHHHHHHHHHHHHHHCTTTTTC-S-CEEEEEET
T ss_pred CcCHHHHHHHHHHHHHhhhhHhhc-C-ceEEEEeC
Confidence 346888899999999 888 7 99999993
No 82
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=20.18 E-value=1.1e+02 Score=17.71 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=11.2
Q ss_pred CceEEEecCCCchhHHHHH
Q psy732 2 DPFFCCCLGSCVDHDAEKL 20 (119)
Q Consensus 2 ~~LlvE~~g~~~~~~~~~~ 20 (119)
+.+-|..+|.++++..+.+
T Consensus 58 ~~i~i~a~G~De~~Al~~l 76 (88)
T 1pch_A 58 TEITIQADGNDADQAIQAI 76 (88)
T ss_dssp CEEEEEEESTTHHHHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHH
Confidence 3567888887654333333
No 83
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=20.08 E-value=1.1e+02 Score=18.24 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=31.2
Q ss_pred ceeeEeeeccchHHHHHHHHHHHHhcCCCCeEEeeeeeCCCCcceeee
Q psy732 65 IYNYDISLSLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLKDQPVVT 112 (119)
Q Consensus 65 ~~~~DvaVP~~~l~~~i~~~~~~~~~~p~~~~~~~GH~GDGNlH~~i~ 112 (119)
...--+.||-+...+.++.+++.+.. |+.|||-+-+...
T Consensus 58 k~~ieivv~d~~v~~vv~~I~~~~~t---------g~~GdGkiFV~~V 96 (112)
T 1hwu_A 58 KVKIEVVVDDKVVEQAVDAIIKAART---------GKIGDGKIFVQEV 96 (112)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCC---------SSTTCCEEEEEEC
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHhcC---------CCCCCEEEEEEEh
Confidence 46779999999999999999988733 6899998765443
Done!