RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy732
         (119 letters)



>d1tvla_ c.1.16.4 (A:) Putative monooxygenase YtnJ {Bacillus
           subtilis [TaxId: 1423]}
          Length = 430

 Score = 26.8 bits (58), Expect = 0.76
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 53  ERIVESCLKDGYIYNYDISLSLKDFYS-IIPIMKER 87
           E    +   DG+I   DI  +L  F   +IPI++ER
Sbjct: 373 ETWFNAEAADGFIVGSDIPGTLDAFVEKVIPILQER 408


>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR),
          C-terminal domain {Bacillus subtilis [TaxId: 1423]}
          Length = 202

 Score = 24.6 bits (53), Expect = 3.3
 Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 2/61 (3%)

Query: 40 SEESKIQKIWPLRERIVES--CLKDGYIYNYDISLSLKDFYSIIPIMKERLKDQPVVTVC 97
           +    + +  L + +      L  GY+Y  DI         +  +      ++ +  V 
Sbjct: 2  KQAEAEEFVQTLGQSLANPERILPGGYVYLTDILGKPSVLSKVGKLFASVFAEREIDVVM 61

Query: 98 G 98
           
Sbjct: 62 T 62


>d2o8ra2 d.322.1.2 (A:113-317) Polyphosphate kinase, PPK
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 205

 Score = 24.5 bits (53), Expect = 3.6
 Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 14  DHDAEKLNTFLQDGIENNIILDAVMCSEESKIQKIWPLRERIVESC-LKDGYIYNYDISL 72
               E L   ++  ++   +        + ++     +   I  SC +           +
Sbjct: 130 AQRPEDLPGEIRKKVKTRKLGAPTRFMYDGRMPD--EVLRYICSSCDIDPEEAIRSGNYV 187

Query: 73  SLKDFYSIIPIMKERLK 89
           +L+D   +      RL+
Sbjct: 188 NLQDLAMLPNPFAPRLE 204


>d1j27a_ d.58.50.1 (A:) Hypothetical protein TT1725 {Thermus
           thermophilus [TaxId: 274]}
          Length = 98

 Score = 23.1 bits (50), Expect = 8.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 73  SLKDFYSIIPIMKERLKDQPVVTVCGYGHLERLK 106
           SLK+  ++I    ERLK +  V+      L+   
Sbjct: 18  SLKEKRALIKPALERLKARFPVSAARLYGLDAWG 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.460 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 499,572
Number of extensions: 21948
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 12
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)