BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7321
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UFM|A Chain A, Solution Structure Of The Pci Domain
Length = 84
Score = 114 bits (286), Expect = 7e-26, Method: Composition-based stats.
Identities = 56/67 (83%), Positives = 61/67 (91%)
Query: 301 ILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360
IL+RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID I
Sbjct: 11 ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGI 70
Query: 361 VHFETRE 367
VHFETRE
Sbjct: 71 VHFETRE 77
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 24/116 (20%)
Query: 257 CQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASK 316
C+ LP +I + + E+ DF +L + A T DGS +++ +V L AS+
Sbjct: 164 CRVLPTGTITKGR------KGKEIADFYSLKEAGCVAFTDDGSPVMDSSVMRKALELASQ 217
Query: 317 L--------------YNNISFPELGALLQISAAKAE----KIASHMICEGRMNGYV 354
L Y I+ E+ ALL +S+ E +IA I R G+V
Sbjct: 218 LGVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHV 273
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 24/116 (20%)
Query: 257 CQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASK 316
C+ LP +I + + E+ DF +L + A T DGS +++ +V L AS+
Sbjct: 119 CRVLPTGTITKGR------KGKEIADFYSLKEAGCVAFTDDGSPVMDSSVMRKALELASQ 172
Query: 317 L--------------YNNISFPELGALLQISAAKAE----KIASHMICEGRMNGYV 354
L Y I+ E+ ALL +S+ E +IA I R G+V
Sbjct: 173 LGVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHV 228
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 230 SALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKP 289
+ L+CT + G A ER H + + + L + +S Q +A LL P
Sbjct: 866 NVLVCTTIIETGIDIP--TANTIIIERADH---FGLAQLHQLRGRVGRSHHQAYAWLLTP 920
Query: 290 HQKAITVDGSSILE 303
H KA+T D LE
Sbjct: 921 HPKAMTTDAQKRLE 934
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 150 YMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRK 202
Y +A +Y E AE +A L+ T D Q+HY Y R ++ RK
Sbjct: 341 YTDLANMYAEGGQYSNAEDIFRKALRLENITDDHKHQIHYH--YGRFQEFHRK 391
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 81 EVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVL 129
EVA P+ L+ ++ VA++ LAL+Y + ++DAAN+L
Sbjct: 44 EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92
>pdb|3TZG|A Chain A, Crystal Structure Of A Hypothetical Protein Bvu_2266
(Bvu_2266) From Bacteroides Vulgatus Atcc 8482 At 2.80 A
Resolution
pdb|3TZG|B Chain B, Crystal Structure Of A Hypothetical Protein Bvu_2266
(Bvu_2266) From Bacteroides Vulgatus Atcc 8482 At 2.80 A
Resolution
Length = 252
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 132 IPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176
+P + G Y ++ L TY A L+DE+PV+ E N LL
Sbjct: 200 LPNDIG---YCXNHGLSTYNVHANYRLDDENPVRIEVLYNYTKLL 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,414,254
Number of Sequences: 62578
Number of extensions: 380028
Number of successful extensions: 1047
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 15
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)