BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7321
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 609 bits (1570), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/399 (73%), Positives = 340/399 (85%), Gaps = 1/399 (0%)
Query: 4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
+ ++ LA L + +GSHKD A KYR ILE ++ T E L FVEA+VNENVSLVI
Sbjct: 3 AAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGTEQL-EALKAFVEAMVNENVSLVI 61
Query: 64 SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
SRQ+LTD THL + PD AK V HFTL+K+QPRVISFEEQVASIRQHLA IYE+EE+WR
Sbjct: 62 SRQLLTDFCTHLPNLPDSTAKEVYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWR 121
Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
+AA VLVGIPLETGQKQY+VDYKL+TY+KIARLYLED+DPVQAEA+INRASLLQ E+ +E
Sbjct: 122 NAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 181
Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
LQ+HYKVCYARVLDYRRKFIEAAQRY+ELSYK I+ E+ER+ ALK AL CTILASAGQQ
Sbjct: 182 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQ 241
Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
RSRMLATLFKDERCQ L AY ILEKMYLDRIIR ++LQ+FAA+L PHQKA T DGSSIL+
Sbjct: 242 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILD 301
Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID IVHF
Sbjct: 302 RAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 361
Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
ETRE LP+WDKQI+SLC+++++++E+I PEW ++ M
Sbjct: 362 ETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM 400
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 607 bits (1564), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/399 (73%), Positives = 339/399 (84%), Gaps = 1/399 (0%)
Query: 4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
+ ++ LA L + +GSHKD A KYR ILE ++ T E L FVEA+VNENVSLVI
Sbjct: 3 AAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGTEQL-EALKAFVEAMVNENVSLVI 61
Query: 64 SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
SRQ+LTD THL + PD AK V HFTL+KVQPRVISFEEQVASIRQ LA IYE+EE+WR
Sbjct: 62 SRQLLTDFCTHLPNLPDSTAKEVYHFTLEKVQPRVISFEEQVASIRQRLASIYEKEEDWR 121
Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
+AA VLVGIPLETGQKQY+VDYKL+TY+KIARLYLED+DPVQAEA+INRASLLQ E+ +E
Sbjct: 122 NAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 181
Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
LQ+HYKVCYARVLDYRRKFIEAAQRY+ELSYK I+ E+ER+ ALK AL CTILASAGQQ
Sbjct: 182 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQ 241
Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
RSRMLATLFKDERCQ L AY ILEKMYLDRIIR ++LQ+FAA+L PHQKA T DGSSIL+
Sbjct: 242 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILD 301
Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID IVHF
Sbjct: 302 RAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 361
Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
ETRE LP+WDKQI+SLC+++++++E+I PEW ++ M
Sbjct: 362 ETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM 400
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1
Length = 406
Score = 606 bits (1563), Expect = e-173, Method: Compositional matrix adjust.
Identities = 290/399 (72%), Positives = 339/399 (84%), Gaps = 1/399 (0%)
Query: 4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
+ ++ LA L + +GSHKD A KYR ILE ++ E L FVEA+VNENVSLVI
Sbjct: 3 AAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQL-EALKAFVEAMVNENVSLVI 61
Query: 64 SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
SRQ+LTD THL + PD AK + HFTL+K+QPRVISFEEQVASIRQHLA IYE+EE+WR
Sbjct: 62 SRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWR 121
Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
+AA VLVGIPLETGQKQY+VDYKL+TY+KIARLYLED+DPVQAEA+INRASLLQ E+ +E
Sbjct: 122 NAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 181
Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
LQ+HYKVCYARVLDYRRKFIEAAQRY+ELSYK I+ E+ER+ ALK AL CTILASAGQQ
Sbjct: 182 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQ 241
Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
RSRMLATLFKDERCQ L AY ILEKMYLDRIIR ++LQ+FAA+L PHQKA T DGSSIL+
Sbjct: 242 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILD 301
Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID IVHF
Sbjct: 302 RAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 361
Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
ETRE LP+WDKQI+SLC+++++++E+I PEW ++ M
Sbjct: 362 ETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM 400
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4
PE=2 SV=1
Length = 406
Score = 606 bits (1563), Expect = e-173, Method: Compositional matrix adjust.
Identities = 290/399 (72%), Positives = 339/399 (84%), Gaps = 1/399 (0%)
Query: 4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
+ ++ LA L + +GSHKD A KYR ILE ++ E L FVEA+VNENVSLVI
Sbjct: 3 AAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQL-EALKAFVEAMVNENVSLVI 61
Query: 64 SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
SRQ+LTD THL + PD AK + HFTL+K+QPRVISFEEQVASIRQHLA IYE+EE+WR
Sbjct: 62 SRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWR 121
Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
+AA VLVGIPLETGQKQY+VDYKL+TY+KIARLYLED+DPVQAEA+INRASLLQ E+ +E
Sbjct: 122 NAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 181
Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
LQ+HYKVCYARVLDYRRKFIEAAQRY+ELSYK I+ E+ER+ ALK AL CTILASAGQQ
Sbjct: 182 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQ 241
Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
RSRMLATLFKDERCQ L AY ILEKMYLDRIIR ++LQ+FAA+L PHQKA T DGSSIL+
Sbjct: 242 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILD 301
Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID IVHF
Sbjct: 302 RAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 361
Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
ETRE LP+WDKQI+SLC+++++++E+I PEW ++ M
Sbjct: 362 ETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM 400
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 606 bits (1563), Expect = e-173, Method: Compositional matrix adjust.
Identities = 290/399 (72%), Positives = 339/399 (84%), Gaps = 1/399 (0%)
Query: 4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
+ ++ LA L + +GSHKD A KYR ILE ++ E L FVEA+VNENVSLVI
Sbjct: 3 AAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQL-EALKAFVEAMVNENVSLVI 61
Query: 64 SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
SRQ+LTD THL + PD AK + HFTL+K+QPRVISFEEQVASIRQHLA IYE+EE+WR
Sbjct: 62 SRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWR 121
Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
+AA VLVGIPLETGQKQY+VDYKL+TY+KIARLYLED+DPVQAEA+INRASLLQ E+ +E
Sbjct: 122 NAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 181
Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
LQ+HYKVCYARVLDYRRKFIEAAQRY+ELSYK I+ E+ER+ ALK AL CTILASAGQQ
Sbjct: 182 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQ 241
Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
RSRMLATLFKDERCQ L AY ILEKMYLDRIIR ++LQ+FAA+L PHQKA T DGSSIL+
Sbjct: 242 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILD 301
Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID IVHF
Sbjct: 302 RAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 361
Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
ETRE LP+WDKQI+SLC+++++++E+I PEW ++ M
Sbjct: 362 ETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM 400
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 605 bits (1561), Expect = e-172, Method: Compositional matrix adjust.
Identities = 289/399 (72%), Positives = 339/399 (84%), Gaps = 1/399 (0%)
Query: 4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
+ ++ LA L + +GSHKD A KYR ILE ++ E L FVEA+VNENVSLVI
Sbjct: 3 AAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQL-EALKAFVEAMVNENVSLVI 61
Query: 64 SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
SRQ+LTD THL + PD AK + HFTL+K+QPRVISFEEQVAS+RQHLA IYE+EE+WR
Sbjct: 62 SRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASVRQHLASIYEKEEDWR 121
Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
+AA VLVGIPLETGQKQY+VDYKL+TY+KIARLYLED+DPVQAEA+INRASLLQ E+ +E
Sbjct: 122 NAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 181
Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
LQ+HYKVCYARVLDYRRKFIEAAQRY+ELSYK I+ E+ER+ ALK AL CTILASAGQQ
Sbjct: 182 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQ 241
Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
RSRMLATLFKDERCQ L AY ILEKMYLDRIIR ++LQ+FAA+L PHQKA T DGSSIL+
Sbjct: 242 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILD 301
Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID IVHF
Sbjct: 302 RAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 361
Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
ETRE LP+WDKQI+SLC+++++++E+I PEW ++ M
Sbjct: 362 ETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM 400
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1
Length = 406
Score = 605 bits (1560), Expect = e-172, Method: Compositional matrix adjust.
Identities = 289/399 (72%), Positives = 339/399 (84%), Gaps = 1/399 (0%)
Query: 4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
+ ++ LA L + +GSHKD A KYR ILE ++ E L FVE++VNENVSLVI
Sbjct: 3 AAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQL-EALKAFVESMVNENVSLVI 61
Query: 64 SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
SRQ+LTD THL + PD AK + HFTL+K+QPRVISFEEQVASIRQHLA IYE+EE+WR
Sbjct: 62 SRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWR 121
Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
+AA VLVGIPLETGQKQY+VDYKL+TY+KIARLYLED+DPVQAEA+INRASLLQ E+ +E
Sbjct: 122 NAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 181
Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
LQ+HYKVCYARVLDYRRKFIEAAQRY+ELSYK I+ E+ER+ ALK AL CTILASAGQQ
Sbjct: 182 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQ 241
Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
RSRMLATLFKDERCQ L AY ILEKMYLDRIIR ++LQ+FAA+L PHQKA T DGSSIL+
Sbjct: 242 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILD 301
Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID IVHF
Sbjct: 302 RAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 361
Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
ETRE LP+WDKQI+SLC+++++++E+I PEW ++ M
Sbjct: 362 ETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM 400
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2
SV=1
Length = 406
Score = 603 bits (1556), Expect = e-172, Method: Compositional matrix adjust.
Identities = 290/399 (72%), Positives = 339/399 (84%), Gaps = 1/399 (0%)
Query: 4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
S ++ +LA L + +GSHKD A KYR ILE L+ D E L FVEA+VNENVSLVI
Sbjct: 3 SGVRQELAQLMNSSGSHKDLAGKYRQILEKALQFTDAEQL-EALKAFVEAMVNENVSLVI 61
Query: 64 SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
SRQ+LTD HL + PD++AK V HFTL+K+QPRVISFEEQVASIRQHLA IYE++E+WR
Sbjct: 62 SRQLLTDFCAHLPNLPDDIAKVVCHFTLEKIQPRVISFEEQVASIRQHLATIYEKQEDWR 121
Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
+AA VLVGIPLETGQKQY+VDYKL TY+KIARLYLED+DPVQAEA+INRASLLQ E+ +E
Sbjct: 122 NAAQVLVGIPLETGQKQYNVDYKLDTYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 181
Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
LQ+HYKVCYARVLDYRRKFIEAAQRY+ELSYK I+ E ER+ ALK AL CTILASAGQQ
Sbjct: 182 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKSIVHETERLEALKHALHCTILASAGQQ 241
Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
RSRMLATLFKDERCQ L AY ILEKMYLDRIIR ++LQ+FAA+L PHQKA T DGSSIL+
Sbjct: 242 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILD 301
Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
RAV EHNLLSASKLYNNI+F ELGALL+I AKAEKIAS MI EGRMNG++DQID IVHF
Sbjct: 302 RAVIEHNLLSASKLYNNITFEELGALLEIPPAKAEKIASQMITEGRMNGFIDQIDGIVHF 361
Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
ETRE LP+WDKQI+SLC+++++++E+I PEW ++ +
Sbjct: 362 ETREPLPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAI 400
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 595 bits (1534), Expect = e-169, Method: Compositional matrix adjust.
Identities = 287/395 (72%), Positives = 332/395 (84%), Gaps = 1/395 (0%)
Query: 4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
+ L++QL L + G+HKDQADKYR +L+ +L N + L LFVEAIVNE+VSLVI
Sbjct: 10 AALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQE-LIDGLRLFVEAIVNEHVSLVI 68
Query: 64 SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
SRQIL DV + L PD+++K +SHFTL+KV PRVISFEEQVA IR HLA IYER + WR
Sbjct: 69 SRQILNDVGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQWR 128
Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
DAA VLVGIPLETGQKQYSV+ KL TY+KIARLYLED D VQAE FINRASLLQAET E
Sbjct: 129 DAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSE 188
Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
LQV YKVCYARVLDYRRKFIEAAQRY+ELSY+ I+D+ ER+TALK ALICT+LASAGQQ
Sbjct: 189 ELQVLYKVCYARVLDYRRKFIEAAQRYNELSYRKIVDQGERMTALKKALICTVLASAGQQ 248
Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
RSRMLATLFKDERCQHLPAY ILEKMYL+RIIR+SELQ+F ALL+ HQKA T DGSSIL+
Sbjct: 249 RSRMLATLFKDERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAATSDGSSILD 308
Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
RAV EHNLLSASKLYNNI+F ELGALL I A KAEKIAS MI EGRMNG++DQI +IVHF
Sbjct: 309 RAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQISAIVHF 368
Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWL 398
E RE+LP WD+QI+SLCY+++ I+E+I +P+W+
Sbjct: 369 ENRELLPQWDRQIQSLCYQVNSIIEKISVAEPDWM 403
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum
GN=csn4 PE=2 SV=1
Length = 393
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/399 (46%), Positives = 283/399 (70%), Gaps = 8/399 (2%)
Query: 1 MDISTLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVS 60
MD++ LK Q+ +S HK + +KY+SIL+ +++++ L +F+ + +E+
Sbjct: 1 MDVNNLK-QILEETSALSDHKTKTEKYKSILQQLVESKQVAP----LKVFITHLTDESTP 55
Query: 61 LVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREE 120
LVISR IL ++ + P+++ + F LD++Q RV++FEEQV+ IR +LA +YER+E
Sbjct: 56 LVISRTILLSFTSSHKTLPEDIQMELGIFVLDRIQNRVVAFEEQVSEIRYNLAKLYERQE 115
Query: 121 NWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAET 180
NWR++A L+ IPL++ Q+ S +YK++ Y+KIARL+LE+E+ QAE +INRAS
Sbjct: 116 NWRESARCLIAIPLDSSQRVISPEYKVKIYVKIARLFLEEEESGQAETYINRASDSLHLV 175
Query: 181 KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASA 240
K++ L + +K C+AR++DY+R F++A+ RY +LS + + + ER+ AL A++C IL A
Sbjct: 176 KNQKLILAHKTCFARIMDYKRMFLKASLRYYDLS-QCLPKDTERMHALSCAIVCAILDKA 234
Query: 241 GQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSS 300
G QRSR LATL+KDER Q L Y+ LEKM+L+RI++K+E++ FA LKPHQ A+ DG++
Sbjct: 235 GPQRSRTLATLYKDERSQQLGVYTFLEKMFLERILKKTEVKKFAEQLKPHQMALLSDGNT 294
Query: 301 ILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360
+L+RAV EHNLLSASKLYNNI+F ELG+LL+I A KAEK+AS M+CE R+ G +DQI+ +
Sbjct: 295 VLDRAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQIERL 354
Query: 361 VHFET-REILPSWDKQIESLCYRIDHIMEQIETVQPEWL 398
+ FE + L WDK+IE LC +++I+E I PE++
Sbjct: 355 IQFENVGDSLTQWDKKIEGLCIHMNNIIESISKY-PEFI 392
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4
PE=1 SV=2
Length = 397
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 182/383 (47%), Positives = 257/383 (67%), Gaps = 12/383 (3%)
Query: 14 SSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVST 73
+S G + + ++Y+ IL +L + D F++ I++++V LV+SRQ+L +
Sbjct: 8 ASAIGDQRQKIEQYKLILSSVLSSNDLLQAQR----FIDHILSDDVPLVVSRQLLQSFAQ 63
Query: 74 HLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIP 133
L E K ++ FTL ++QPRV+SFEEQ IR+ LA +YE E+ W AA +L GI
Sbjct: 64 ELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLSGID 123
Query: 134 LETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCY 193
L++G + ++KL ++IARLYLED+D V AEAFIN+AS L + +++E L + YKVCY
Sbjct: 124 LDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYKVCY 183
Query: 194 ARVLDYRRKFIEAAQRY---SELSYKPI----IDEAERITALKSALICTILASAGQQRSR 246
AR+LD +RKF+EAA RY S++ + I IDE AL +A+ CTILA AG QRSR
Sbjct: 184 ARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSR 243
Query: 247 MLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAV 306
+LATL+KDERC L Y IL+K+YL+RI+R+ E+ F+ L+PHQKA D S++L+RA+
Sbjct: 244 VLATLYKDERCSKLKIYPILQKVYLERILRRPEIDAFSEELRPHQKASLPDKSTVLDRAM 303
Query: 307 TEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366
EHNLLSASKLY NI F ELG LL I KAEKIA++MI + RM G +DQ ++++HFE
Sbjct: 304 IEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAVIHFEDD 363
Query: 367 -EILPSWDKQIESLCYRIDHIME 388
E L WD+QI LC ++ I++
Sbjct: 364 VEELQQWDQQISGLCQALNDILD 386
>sp|Q9C467|CSN4_EMENI COP9 signalosome complex subunit 4 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnD PE=1 SV=2
Length = 408
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/353 (39%), Positives = 221/353 (62%), Gaps = 12/353 (3%)
Query: 50 FVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIR 109
+++++++E++S+V +R IL L E V+ ++ +Q R S EEQ A IR
Sbjct: 49 YLDSVLSEDLSIVAARPILDSFIYTLRKLSSETQIKVAQHAVNLLQSRSASVEEQDAQIR 108
Query: 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAF 169
+ LA YE EE + AA L GI +++ Q+ S K++ +++I RLYLE++D AEAF
Sbjct: 109 EILADAYEAEEEYIAAARALQGIHIDSSQRLVSDSAKVKLWIRIVRLYLEEDDTTSAEAF 168
Query: 170 INRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALK 229
+NR L ++ +D L++H+++ AR+ D RR+F++A+Q Y +S +DE++R+ AL
Sbjct: 169 LNRIKNLPSKIEDHELKLHFRLSQARIQDARRRFLDASQEYFAVSLAAGVDESDRLQALA 228
Query: 230 SALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKP 289
+A+ C +LA AG QRSR LATL+KD+R + + ILEKM+LDR++ E+ FA L P
Sbjct: 229 AAIRCAVLAPAGPQRSRTLATLYKDDRATSVEEFGILEKMFLDRLLTPEEVSAFAQRLAP 288
Query: 290 HQKAITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAA-------KAEKIAS 342
HQ A T DG+++L++AV EHNL++ASKLY NI LGA+L + A+ KAE A+
Sbjct: 289 HQLAQTADGTTVLDKAVVEHNLVAASKLYENIKTDALGAILGLQASGDLTAGEKAEAYAA 348
Query: 343 HMICEGRMNGYVDQIDSIVHFE-----TREILPSWDKQIESLCYRIDHIMEQI 390
M+ +GR++G +DQID I++FE T + WD ++ L ++ + I
Sbjct: 349 RMVEQGRLSGSIDQIDGIIYFESNTTATGRHIRQWDAGVQGLSEGVERVATNI 401
>sp|Q7S0P8|CSN4_NEUCR COP9 signalosome complex subunit 4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-4 PE=1 SV=1
Length = 440
Score = 239 bits (609), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 212/367 (57%), Gaps = 20/367 (5%)
Query: 19 SHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVS- 77
S D+ +R+I+ I + D + L +AI E++ +V +R ++ D+ L S
Sbjct: 17 SQADRPAAFRTIITTITSSPDPSHFAADLKAVTDAIFLESLGVVATRALVIDLIDALKSL 76
Query: 78 -----QPDEVAKPVSHFTLD---------KVQPRV-ISFEEQVASIRQHL-ALIYEREEN 121
D + S LD + P + S +Q A+I + L A +E + +
Sbjct: 77 ASGGPSADSINSTTSSIWLDVGKAIQQHIQSNPTLATSLVDQTATIYEELLAAAHESQNS 136
Query: 122 WRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK 181
+ DAA L IPL++ Q++ + YK +++I R YLED+D AE ++N+ +
Sbjct: 137 FTDAAKTLAAIPLDSSQRRVTDKYKADLWIRIIRNYLEDDDATSAETYLNKLKNIIHNVA 196
Query: 182 DET--LQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILAS 239
D+ L +H+K+ AR+ D R+F+ A+Q Y E+S P I E ER+ L A+ C +LA
Sbjct: 197 DDNPVLNLHFKLSAARIQDSNRQFLAASQSYYEISLSPAIAEEERLHTLSMAIKCAVLAP 256
Query: 240 AGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGS 299
AG RSR+LA L+KDER L + ILEKM+LDR++ ++E++ FA L PHQ A T DGS
Sbjct: 257 AGPPRSRVLARLYKDERSASLEEFGILEKMFLDRLLARAEVEKFAQGLAPHQLATTSDGS 316
Query: 300 SILERAVTEHNLLSASKLYNNISFPELGALLQI-SAAKAEKIASHMICEGRMNGYVDQID 358
++L +A+ EHNLL+ S+LY NI F LG+ L + S KAE+I + MI +GR+ G +DQID
Sbjct: 317 TVLAKAMVEHNLLAVSRLYRNIGFDALGSWLGLDSGNKAEEITARMIEQGRLAGSIDQID 376
Query: 359 SIVHFET 365
I++FE+
Sbjct: 377 RIIYFES 383
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans
GN=csn-4 PE=1 SV=1
Length = 412
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 207/361 (57%), Gaps = 9/361 (2%)
Query: 45 ECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQ--PDEVAKPVSHFTLDKVQPRVISFE 102
E + + I E S+V+SRQ ++ ++ L +Q E K +S L ++ R IS+E
Sbjct: 48 EIIKIIDTVIALETGSMVVSRQFVSLITERLDNQHLESECVKAISEGILAIIKTRTISYE 107
Query: 103 EQVASIRQHLALIYEREENWRDAANVLVGI-----PLETGQKQYSVDYKLQTYMKIARLY 157
+QV +R LA +YE+E +DAA L+ I P G + K Q ++I +L
Sbjct: 108 DQVCILRLMLASLYEKEGRIKDAAQALIAINSDTSPKFNGPQAAKEGAKAQLCIRITKLL 167
Query: 158 LEDEDPVQAEAFINRASLLQAE-TKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216
L+ + +AE ++NR S+L + + +Q+ +K ARV D +R+F+EAAQRY ELS
Sbjct: 168 LDCSEIDEAEQYVNRTSILMVDLGANPDIQIEHKALQARVSDAKRRFVEAAQRYYELSAT 227
Query: 217 PIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIR 276
+ ++++TAL A++C +LA G QRSR+L +FKDER ++ ++ KMYL ++I
Sbjct: 228 EQLPNSDKLTALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPKCASFELIAKMYLTKVIH 287
Query: 277 KSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAK 336
K EL++F L+ HQKA G SIL+ + EHN+ + S+LY NISF LG LL +
Sbjct: 288 KDELEEFEHQLQDHQKA-DEHGESILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEA 346
Query: 337 AEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIETVQPE 396
AE +A MI R++GY+DQ + I+HFE + WD QI S +I+ + + I E
Sbjct: 347 AESMAGEMISSERLHGYIDQTNGILHFEDSNPMRVWDSQILSTLEQINKVSDMIVARHSE 406
Query: 397 W 397
+
Sbjct: 407 F 407
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium
discoideum GN=psmD12 PE=2 SV=1
Length = 447
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 148/328 (45%), Gaps = 24/328 (7%)
Query: 90 TLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQT 149
TL + I E + A + + L+ I E E + AA +L + +ET + K+
Sbjct: 128 TLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKRE-KITF 186
Query: 150 YMKIARLYLEDEDPVQAEAF---INRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEA 206
++ R+ + ++D ++A+ +NR +L + E +D L++ Y R + +IE
Sbjct: 187 FIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQD--LKIDYFKQMIRYFSHSANYIEI 244
Query: 207 AQRYSELSYKPII--DEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAY- 263
A+ Y + P + D + + LK I IL+++ ++S +L +++ + + Y
Sbjct: 245 ARCYLSIYDTPSVEKDTPQLLQTLKYICIYVILSASSNEQSDLLNRVYEFKPLTDIQNYK 304
Query: 264 SILEKMYLDRIIRKSELQDFAALLKPHQKAITV-----DGSSILERAVTEHNLLSASKLY 318
+L + +IR S F L KP + TV + L + V EHN+ S Y
Sbjct: 305 DLLNQFKTLELIRWST---FFELNKPELDSQTVFKTEPNAWEDLRKRVIEHNIRVISTYY 361
Query: 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFET----REILPSWDK 374
IS L LL +S ++EK S ++ + +D+ I F T ++L +W
Sbjct: 362 QKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKIDRPAGIATFTTTNDPNKVLNAWAN 421
Query: 375 QIESLCYRIDHIMEQIETVQPEWLSKKM 402
I SL +D + + VQ E++ K+
Sbjct: 422 NITSL---LDLVEKTNHLVQREFMLHKI 446
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 164/359 (45%), Gaps = 38/359 (10%)
Query: 54 IVNENVSLVISRQI-LTDVSTHLVSQPDEVAKPVSHF--------TLDKVQPRVISFEEQ 104
++NEN+ L+ R+ L +V Q + ++ TL V I E +
Sbjct: 82 LLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIE 141
Query: 105 VASIRQHLALIYEREENWRDAANVLVGIPLET---GQKQYSVDYKLQTYMKIARLYLEDE 161
A + + LA I E+ + ++AA++L + +ET +K+ V++ L+ RL L +
Sbjct: 142 RARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQ----MRLCLAVK 197
Query: 162 DPVQAEAFINR--ASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPII 219
D ++ + + Q E E L++ Y ++ + ++ + Y + P I
Sbjct: 198 DYIRTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCI 256
Query: 220 D-EAERIT-ALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLD-RIIR 276
E+E+ ALKS ++ ILA ++S ++ + D++ + +P Y L K++ ++R
Sbjct: 257 QAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMR 316
Query: 277 KSEL-QDFAALLKP---HQKAITVDGSS--------ILERAVTEHNLLSASKLYNNISFP 324
S L +D+ L+ A V GS+ L+ V EHN+ +K Y I+
Sbjct: 317 WSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMK 376
Query: 325 ELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE----TREILPSWDKQIESL 379
+ LL +S ++E S+++ + VD++ I++F+ +L W +++ SL
Sbjct: 377 RMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSL 435
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens
GN=PSMD12 PE=1 SV=3
Length = 456
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 164/359 (45%), Gaps = 38/359 (10%)
Query: 54 IVNENVSLVISRQI-LTDVSTHLVSQPDEVAKPVSHF--------TLDKVQPRVISFEEQ 104
++NEN+ L+ R+ L +V Q + ++ TL V I E +
Sbjct: 82 LLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIE 141
Query: 105 VASIRQHLALIYEREENWRDAANVLVGIPLET---GQKQYSVDYKLQTYMKIARLYLEDE 161
A + + LA I E+ + ++AA++L + +ET +K+ V++ L+ RL L +
Sbjct: 142 RARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQ----MRLCLAVK 197
Query: 162 DPVQAEAFINR--ASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPII 219
D ++ + + Q E E L++ Y ++ + ++ + Y + P I
Sbjct: 198 DYIRTQIISKKINTKFFQEEN-TEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCI 256
Query: 220 D-EAERIT-ALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLD-RIIR 276
E+E+ ALKS ++ ILA ++S ++ + D++ + +P Y L K++ ++R
Sbjct: 257 QAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMR 316
Query: 277 KSEL-QDFAALLKP---HQKAITVDGSS--------ILERAVTEHNLLSASKLYNNISFP 324
S L +D+ L+ A V GS+ L+ V EHN+ +K Y I+
Sbjct: 317 WSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMK 376
Query: 325 ELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE----TREILPSWDKQIESL 379
+ LL +S ++E S+++ + VD++ I++F+ +L W +++ SL
Sbjct: 377 RMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSL 435
>sp|O13895|CSN4_SCHPO COP9 signalosome complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn4 PE=1 SV=1
Length = 377
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 121/275 (44%), Gaps = 12/275 (4%)
Query: 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDED 162
E + S LA IYE E+N+ + L + + G + ++ L +++ YL+
Sbjct: 92 EYLVSCCLQLATIYEAEQNFELLCSSLEAVE-KHGHFENDLEQLLLLRIRLGDAYLKLGK 150
Query: 163 PVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSE-LSYKPIIDE 221
+A + + L + ++ L + ++C AR LD +F+EAA+ Y L YK +E
Sbjct: 151 AEKAILTVRTSIPLAFKVSNDQLLMELQLCNARALDETGQFLEAAKCYYRVLQYKVPGNE 210
Query: 222 AERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQ 281
L S C +LA + L + + +P YS++EK + I K +
Sbjct: 211 LIYRENLCSVAQCLLLAIPSPIVLQFLQEISLQPSVREIPFYSLVEKYLKRKFIGKEDGA 270
Query: 282 DFAALLKPHQKAITVDGSSILE--RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEK 339
L PHQ + + ++E R E N+L S+ + S L ++S + +
Sbjct: 271 FLLPFLLPHQ---VIHMNRLIEDGRHFLETNILFLSEFFEVSSTSILAKHFKLSEEQVDT 327
Query: 340 IASHMICEGRMNGYVDQIDSIVHFETREILPSWDK 374
+ + M+ + R+N +DQ + + F LP + K
Sbjct: 328 VVADMVIQERLNASIDQCEGYITF-----LPEYGK 357
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 163/359 (45%), Gaps = 38/359 (10%)
Query: 54 IVNENVSLVISRQI-LTDVSTHLVSQPDEVAKPVSHF--------TLDKVQPRVISFEEQ 104
++NEN+ L+ R+ L +V Q + ++ TL V I E +
Sbjct: 82 LLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIE 141
Query: 105 VASIRQHLALIYEREENWRDAANVLVGIPLET---GQKQYSVDYKLQTYMKIARLYLEDE 161
A + + LA I E+ + ++AA++L + +ET +K+ V++ L+ RL L +
Sbjct: 142 RARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQ----MRLCLAVK 197
Query: 162 DPVQAEAFINR--ASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPII 219
D ++ + + Q E E L++ Y ++ + ++ + Y + P I
Sbjct: 198 DYIRTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCI 256
Query: 220 D-EAERIT-ALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLD-RIIR 276
E+E+ ALKS ++ ILA ++S ++ + D++ + +P Y L K++ ++R
Sbjct: 257 QAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMR 316
Query: 277 KSEL-QDFAALLKP---HQKAITVDGSS--------ILERAVTEHNLLSASKLYNNISFP 324
S L +D+ L+ A V G + L+ V EHN+ +K Y I+
Sbjct: 317 WSTLVEDYGMELRKGSLESPATDVFGYTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMK 376
Query: 325 ELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE----TREILPSWDKQIESL 379
+ LL +S ++E S+++ + VD++ I++F+ +L W +++ SL
Sbjct: 377 RMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSL 435
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus
GN=Psmd12 PE=1 SV=4
Length = 456
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 161/359 (44%), Gaps = 38/359 (10%)
Query: 54 IVNENVSLVISRQI-LTDVSTHLVSQPDEVAKPVSHF--------TLDKVQPRVISFEEQ 104
++NEN+ L+ R+ L +V Q + ++ TL V I E +
Sbjct: 82 LLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIE 141
Query: 105 VASIRQHLALIYEREENWRDAANVLVGIPLET---GQKQYSVDYKLQTYMKIARLYLEDE 161
A + + LA I E+ + ++AA++L + +ET +K+ V++ L+ RL L +
Sbjct: 142 RARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQ----MRLCLAVK 197
Query: 162 DPVQAEAFINR--ASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPII 219
D ++ + + Q E E L++ Y ++ + ++ + Y + P I
Sbjct: 198 DYIRTQIISKKINTKFFQEENT-ENLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCI 256
Query: 220 D-EAERIT-ALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLD-RIIR 276
E+++ ALKS ++ ILA ++S ++ + D++ + +P Y L K++ ++R
Sbjct: 257 QAESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMR 316
Query: 277 KSEL-QDFAA-LLKPHQKAITVDGSSILERA----------VTEHNLLSASKLYNNISFP 324
S L +D+ L K + D S E V EHN+ +K Y I+
Sbjct: 317 WSTLVEDYGVELRKGSSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMAKYYTRITMK 376
Query: 325 ELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE----TREILPSWDKQIESL 379
+ LL +S ++E S+++ + VD++ +++F+ +L W +++ SL
Sbjct: 377 RMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSL 435
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 214 SYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDR 273
Y I D+ ALK ++C I+ + +Q ML+T E + + I+ +
Sbjct: 225 GYGSIGDKVNATGALKYMILCKIMLNETEQIPAMLST---KEVLPYNTSPRIVAIRAMAD 281
Query: 274 IIRKSELQDFAALLKPHQKAITVDG-----SSILERAVTEHNLLSASKLYNNISFPELGA 328
RK L+DF L+ H+K + D S LER + E + + Y+ I +
Sbjct: 282 AFRKRSLKDFMKALEEHKKELVEDKVVAVHSQNLERTMLEKEISRVIEPYSEIELSYIAR 341
Query: 329 LLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILP 370
++ ++ EK + MI + ++ G +DQ H +T I P
Sbjct: 342 VIGMTVPPTEKAIARMILDKKLMGSIDQ-----HGDTVVIYP 378
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 24/193 (12%)
Query: 203 FIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPA 262
F EA + Y E S P R T LK ++ +L +G + E +
Sbjct: 259 FFEAFKNYDE-SGSP-----RRTTCLKYLVLANMLMKSG------INPFDSQEAKPYKND 306
Query: 263 YSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGS-----SILERAVTEHNLLSASKL 317
IL L + +++ +F +L+ H+ I D L R + L+ +
Sbjct: 307 PEILAMTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRP 366
Query: 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFET-------REILP 370
Y NI+ P + L I A+ E + I + + G +DQ++ ++ + L
Sbjct: 367 YKNIAIPFIANALNIEPAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINSSASRYNALE 426
Query: 371 SWDKQIESLCYRI 383
W QI+SL + +
Sbjct: 427 KWSNQIQSLQFAV 439
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 214 SYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDR 273
+ I D+ +ALK ++C I+ + +Q + +LA E + + I+ +
Sbjct: 230 GFASIGDKINATSALKYMILCKIMLNETEQLAGLLAA---KEIVAYQKSPRIIAIRSMAD 286
Query: 274 IIRKSELQDFAALLKPHQKAITVDG-----SSILERAVTEHNLLSASKLYNNISFPELGA 328
RK L+DF L H+ + D S LER + E + + Y+ I +
Sbjct: 287 AFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIAR 346
Query: 329 LLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWD 373
++ ++ E+ + MI + ++ G +DQ H +T + P D
Sbjct: 347 VIGMTVPPVERAIARMILDKKLMGSIDQ-----HGDTVVVYPKAD 386
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 27/186 (14%)
Query: 244 RSRMLATLFKDERCQHLPAYS---------ILEKMY--LDRIIRKSELQDFAALLKPHQK 292
+ +L +L + Q LP Y+ L Y L +I + + AL+ H +
Sbjct: 225 KKYILVSLILHGKVQQLPKYTSQIVGRFIKPLSNAYHELAQIYATNNPAELRALVNKHSE 284
Query: 293 AITVDGSSILER----AVTEHNLLSASKLYNNISFPELGALLQISAAK-AEKIASHMICE 347
T D ++ L + ++ + N+ +K + +S ++ + +Q+S + AEK HMI +
Sbjct: 285 TFTRDNNTGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIED 344
Query: 348 GRMNGYVDQIDSIVHFETRE-------ILPSWDKQIESLCYRIDH---IMEQIETVQPEW 397
G + ++Q D +V F +L D+++ C +D M+Q TV P++
Sbjct: 345 GEIYASINQKDGMVCFHDNPEKYNNPAMLHKIDQEMLK-CIELDEKLKSMDQEITVNPQF 403
Query: 398 LSKKMA 403
+ K M
Sbjct: 404 VQKSMG 409
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 262 AYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILER----AVTEHNLLSASKL 317
AY L ++Y + SEL++ L+ H + T D + L + ++ + N+ +K
Sbjct: 259 AYHELAQVYSTN--KPSELRN---LVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKT 313
Query: 318 YNNISFPELGALLQISAAK-AEKIASHMICEGRMNGYVDQIDSIVHFETRE-------IL 369
+ +S ++ + +Q+S + AEK HMI +G + ++Q D +V F +L
Sbjct: 314 FLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVCFHDNPEKYNNPAML 373
Query: 370 PSWDKQIESLCYRIDH---IMEQIETVQPEWLSKKMA 403
+ D+++ C +D M+Q TV P+++ K M
Sbjct: 374 HNIDQEMLK-CIELDERLKAMDQEITVNPQFVQKSMG 409
>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2
SV=1
Length = 423
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 278 SELQDFAALLKPHQKAITVDGSSILER----AVTEHNLLSASKLYNNISFPELGALLQIS 333
SEL++ L+ H + T D + L + ++ + N+ +K + +S ++ + +Q+S
Sbjct: 273 SELRN---LVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLS 329
Query: 334 AAK-AEKIASHMICEGRMNGYVDQIDSIVHFETRE-------ILPSWDKQIESLCYRIDH 385
+ AEK HMI +G + ++Q D +V F +L + D+++ C +D
Sbjct: 330 GPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLK-CIELDE 388
Query: 386 ---IMEQIETVQPEWLSKKMA 403
M+Q TV P+++ K M
Sbjct: 389 RLKAMDQEITVNPQFVQKSMG 409
>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3
PE=2 SV=1
Length = 423
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 278 SELQDFAALLKPHQKAITVDGSSILER----AVTEHNLLSASKLYNNISFPELGALLQIS 333
SEL++ L+ H + T D + L + ++ + N+ +K + +S ++ + +Q+S
Sbjct: 273 SELRN---LVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLS 329
Query: 334 AAK-AEKIASHMICEGRMNGYVDQIDSIVHFETRE-------ILPSWDKQIESLCYRIDH 385
+ AEK HMI +G + ++Q D +V F +L + D+++ C +D
Sbjct: 330 GPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLK-CIELDE 388
Query: 386 ---IMEQIETVQPEWLSKKMA 403
M+Q TV P+++ K M
Sbjct: 389 RLKAMDQEITVNPQFVQKSMG 409
>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1
SV=3
Length = 423
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 278 SELQDFAALLKPHQKAITVDGSSILER----AVTEHNLLSASKLYNNISFPELGALLQIS 333
SEL++ L+ H + T D + L + ++ + N+ +K + +S ++ + +Q+S
Sbjct: 273 SELRN---LVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLS 329
Query: 334 AAK-AEKIASHMICEGRMNGYVDQIDSIVHFETRE-------ILPSWDKQIESLCYRIDH 385
+ AEK HMI +G + ++Q D +V F +L + D+++ C +D
Sbjct: 330 GPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLK-CIELDE 388
Query: 386 ---IMEQIETVQPEWLSKKMA 403
M+Q TV P+++ K M
Sbjct: 389 RLKAMDQEITVNPQFVQKSMG 409
>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3
PE=2 SV=1
Length = 423
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 278 SELQDFAALLKPHQKAITVDGSSILER----AVTEHNLLSASKLYNNISFPELGALLQIS 333
SEL++ L+ H + T D + L + ++ + N+ +K + +S ++ + +Q+S
Sbjct: 273 SELRN---LVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLS 329
Query: 334 AAK-AEKIASHMICEGRMNGYVDQIDSIVHFETRE-------ILPSWDKQIESLCYRIDH 385
+ AEK HMI +G + ++Q D +V F +L + D+++ C +D
Sbjct: 330 GPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLK-CIELDE 388
Query: 386 ---IMEQIETVQPEWLSKKMA 403
M+Q TV P+++ K M
Sbjct: 389 RLKAMDQEITVNPQFVQKSMG 409
>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1
SV=3
Length = 423
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 278 SELQDFAALLKPHQKAITVDGSSILER----AVTEHNLLSASKLYNNISFPELGALLQIS 333
SEL++ L+ H + T D + L + ++ + N+ +K + +S ++ + +Q+S
Sbjct: 273 SELRN---LVSKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLS 329
Query: 334 AAK-AEKIASHMICEGRMNGYVDQIDSIVHFETRE-------ILPSWDKQIESLCYRIDH 385
+ AEK HMI +G + ++Q D +V F +L + D+++ C +D
Sbjct: 330 GPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLK-CIELDE 388
Query: 386 ---IMEQIETVQPEWLSKKMA 403
M+Q TV P+++ K M
Sbjct: 389 RLKAMDQEITVNPQFVQKSMG 409
>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1
Length = 423
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 27/186 (14%)
Query: 244 RSRMLATLFKDERCQHLPAYS---------ILEKMY--LDRIIRKSELQDFAALLKPHQK 292
+ +L +L + Q LP Y+ L Y L ++ + + +L+ H +
Sbjct: 225 KKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRSLVTKHSE 284
Query: 293 AITVDGSSILER----AVTEHNLLSASKLYNNISFPELGALLQISAAK-AEKIASHMICE 347
T D + L + ++ + N+ +K + +S ++ + +Q+S + AEK HMI +
Sbjct: 285 IFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIED 344
Query: 348 GRMNGYVDQIDSIVHFETRE-------ILPSWDKQIESLCYRIDH---IMEQIETVQPEW 397
G + ++Q D +V F +L + D+++ C +D M+Q TV P++
Sbjct: 345 GEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAMDQEITVNPQF 403
Query: 398 LSKKMA 403
+ K M
Sbjct: 404 VQKSMG 409
>sp|P54576|MCPC_BACSU Methyl-accepting chemotaxis protein McpC OS=Bacillus subtilis
(strain 168) GN=mcpC PE=1 SV=2
Length = 655
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 339 KIASHMICEG-RMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIETVQPEW 397
K ASH + E RMN D+ +S +H ET E+L + +++SL IDHI +I+ + E
Sbjct: 539 KEASHAMVEASRMN---DEQNSAIH-ETGEVLNTITAEMQSLVQGIDHIYAEIQRMSEEQ 594
Query: 398 LS 399
L+
Sbjct: 595 LA 596
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 26/190 (13%)
Query: 203 FIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPA 262
F EA + Y E S P R T LK ++ +L +G + E +
Sbjct: 258 FFEAFKNYDE-SGSP-----RRTTCLKYLVLANMLMKSG------INPFDSQEAKPYKND 305
Query: 263 YSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE------RAVTEHNLLSASK 316
IL L + +++ +F +LK + I +D I E R + L+ K
Sbjct: 306 PEILAMTNLVSAYQNNDITEFEKILKTNHSNI-MDDPFIREHIEELLRNIRTQVLIKLIK 364
Query: 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETRE-------IL 369
Y I P + L I A E + I + +NG +DQ++ ++ + ++ L
Sbjct: 365 PYTRIHIPFISKELNIDVADVESLLVQCILDNTINGRIDQVNQLLELDHQKRGGARYTAL 424
Query: 370 PSWDKQIESL 379
W Q+ SL
Sbjct: 425 DKWTNQLNSL 434
>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3
PE=2 SV=1
Length = 423
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 27/186 (14%)
Query: 244 RSRMLATLFKDERCQHLPAYS---------ILEKMY--LDRIIRKSELQDFAALLKPHQK 292
+ +L +L + Q LP Y+ L Y L ++ + + L+ H +
Sbjct: 225 KKYILVSLILHGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNE 284
Query: 293 AITVDGSSILER----AVTEHNLLSASKLYNNISFPELGALLQISAAK-AEKIASHMICE 347
T D + L + ++ + N+ +K + +S ++ + +Q+S A+ AEK +MI +
Sbjct: 285 TFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIED 344
Query: 348 GRMNGYVDQIDSIVHFETRE-------ILPSWDKQIESLCYRID---HIMEQIETVQPEW 397
G + ++Q D +V F +L + D+++ C +D M+Q TV P++
Sbjct: 345 GEIFASINQKDGMVCFHDNPEKYNNPAMLHNIDQEMLR-CIDLDDRLKAMDQEITVNPQF 403
Query: 398 LSKKMA 403
+ K M
Sbjct: 404 VQKSMG 409
>sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2
SV=1
Length = 423
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 27/186 (14%)
Query: 244 RSRMLATLFKDERCQHLPAYSI---------LEKMY--LDRIIRKSELQDFAALLKPHQK 292
+ +L +L + Q LP Y+ L Y L ++ + + L+ H +
Sbjct: 225 KKYILVSLILHGKVQQLPKYTSQVVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNE 284
Query: 293 AITVDGSSILER----AVTEHNLLSASKLYNNISFPELGALLQISAAK-AEKIASHMICE 347
T D + L + ++ + N+ +K + +S ++ + +Q+S A+ AEK +MI +
Sbjct: 285 TFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIED 344
Query: 348 GRMNGYVDQIDSIVHF-------ETREILPSWDKQIESLCYRID---HIMEQIETVQPEW 397
G + ++Q D +V F +L + D+++ C +D M+Q TV P++
Sbjct: 345 GEIFASINQKDGMVCFHDSPEKYNNPAMLHNIDQEMLR-CIDLDDRLKAMDQEITVNPQF 403
Query: 398 LSKKMA 403
+ K M
Sbjct: 404 VQKSMG 409
>sp|Q92BB4|EZRA_LISIN Septation ring formation regulator EzrA OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=ezrA PE=3 SV=1
Length = 571
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 326 LGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQ---IESLCYR 382
LG L AK +A ++ R + DQ D H E REI+ S K+ IE+ R
Sbjct: 162 LGETLPYVEAKLNSLAENL---NRYDSLTDQAD---HLEAREIVISVQKEMAVIEAQMER 215
Query: 383 IDHIMEQIETVQPEWLSKKMADY 405
I ++ + +T+ PE ++K A Y
Sbjct: 216 IPSLLHETDTILPEEMNKLRAGY 238
>sp|O70739|CAPSD_TTVA1 Capsid protein OS=Torque teno virus 1 (isolate TA278) GN=ORF1 PE=3
SV=1
Length = 770
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 151 MKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRY 210
+K A+LYLE + F N +D TL+ H + + L R + E Y
Sbjct: 379 IKAAKLYLEATKTLLGNTFTN---------EDYTLEYHGGLYSSIWLSPGRSYFETTGAY 429
Query: 211 SELSYKPIIDEAE 223
+++ Y P D E
Sbjct: 430 TDIKYNPFTDRGE 442
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 203 FIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQR----SRMLATLFKDERCQ 258
F EA + Y ID +TALK L+C I+ S ++ S L + +
Sbjct: 232 FFEAFEGYDS------IDSPRAVTALKYMLLCKIMLSLPEEVQALISGKLGLRYAGRQTD 285
Query: 259 HLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGS-----SILERAVTEHNLLS 313
L + + + L DF L + K + D + L + E NL+
Sbjct: 286 ALKCIA--------QASKNRSLADFEKALTEYTKELRDDPIINTHLAKLYDNLLEQNLIR 337
Query: 314 ASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQI-DSIVHFETREILPSW 372
+ ++ + + L+++S E+ S MI + + +G +DQ D ++ FE P
Sbjct: 338 VIEPFSRVQITHIAGLIKLSKNDVERKLSQMILDKKFHGILDQGEDVLIIFEE----PPV 393
Query: 373 DKQIESLCYRIDHIMEQIETV 393
DK E+ I ++ + ++++
Sbjct: 394 DKTYEAALETIQNMSKVVDSL 414
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 81/189 (42%), Gaps = 28/189 (14%)
Query: 203 FIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQR----SRMLATLFKDERCQ 258
F EA + Y ID ITALK L+C I+ ++ + S LA + + +
Sbjct: 231 FYEAFEGYDS------IDSPRAITALKYMLLCKIMLNSPEDVQSLISGKLALRYAGRQTE 284
Query: 259 HLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVT-------EHNL 311
L + + + L DF L ++ + D I+ +T E NL
Sbjct: 285 ALKCVA--------QASKNRSLADFEKALTEYKAELRDD--PIISTHLTKLYDNLLEQNL 334
Query: 312 LSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI-VHFETREILP 370
+ + ++ + + L+++S E+ S MI + + +G +DQ + + + F+ +
Sbjct: 335 IRVIEPFSRVQIEHISELIKLSKGDVERKLSQMILDQKFHGILDQGEGVLIVFDEPPVDK 394
Query: 371 SWDKQIESL 379
+++ +E++
Sbjct: 395 TYEASLETI 403
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,261,253
Number of Sequences: 539616
Number of extensions: 4998806
Number of successful extensions: 14787
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 14734
Number of HSP's gapped (non-prelim): 55
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)