Query psy7321
Match_columns 408
No_of_seqs 262 out of 833
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:48:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1497|consensus 100.0 5.5E-87 1.2E-91 633.0 35.6 396 4-400 2-397 (399)
2 KOG1498|consensus 100.0 1.1E-67 2.4E-72 513.6 30.1 342 53-395 69-432 (439)
3 COG5071 RPN5 26S proteasome re 100.0 2.4E-58 5.1E-63 435.1 25.4 340 55-395 71-432 (439)
4 KOG0687|consensus 100.0 4.5E-33 9.7E-38 266.2 23.5 310 58-386 63-384 (393)
5 KOG1463|consensus 100.0 2.9E-29 6.3E-34 241.3 23.9 324 45-382 65-407 (411)
6 COG5187 RPN7 26S proteasome re 100.0 3.2E-27 7E-32 223.2 21.8 285 83-383 94-395 (412)
7 KOG1464|consensus 99.9 1.6E-23 3.5E-28 197.2 19.4 262 110-384 149-436 (440)
8 COG5159 RPN6 26S proteasome re 99.9 5.2E-23 1.1E-27 194.7 22.2 310 67-391 86-414 (421)
9 KOG2581|consensus 99.8 1.1E-18 2.3E-23 171.9 24.9 279 101-395 164-459 (493)
10 PF01399 PCI: PCI domain; Int 99.6 1.7E-15 3.8E-20 124.9 10.9 100 261-365 1-105 (105)
11 PF10602 RPN7: 26S proteasome 99.6 3.2E-15 6.9E-20 136.3 12.5 148 98-249 28-176 (177)
12 KOG2908|consensus 99.6 2E-12 4.2E-17 125.6 31.8 272 112-390 81-378 (380)
13 KOG0686|consensus 99.6 9.6E-14 2.1E-18 137.3 23.1 254 105-366 149-411 (466)
14 smart00753 PAM PCI/PINT associ 99.4 2.9E-12 6.4E-17 103.1 10.0 67 300-366 4-70 (88)
15 smart00088 PINT motif in prote 99.4 2.9E-12 6.4E-17 103.1 10.0 67 300-366 4-70 (88)
16 KOG2582|consensus 99.1 2.2E-08 4.9E-13 98.4 21.4 212 181-405 177-406 (422)
17 KOG1076|consensus 98.5 3E-05 6.6E-10 82.0 21.9 67 301-367 695-765 (843)
18 KOG2753|consensus 98.0 0.0012 2.7E-08 64.7 21.0 152 203-364 181-338 (378)
19 KOG2688|consensus 97.6 0.00062 1.3E-08 68.9 12.5 210 147-369 163-388 (394)
20 KOG2758|consensus 97.6 0.091 2E-06 51.9 26.0 51 316-366 345-395 (432)
21 KOG2072|consensus 97.2 0.059 1.3E-06 58.7 21.6 216 147-365 232-493 (988)
22 PF14938 SNAP: Soluble NSF att 97.0 0.027 5.8E-07 55.0 15.9 186 110-300 79-270 (282)
23 COG5600 Transcription-associat 96.9 0.043 9.2E-07 55.1 15.5 237 120-369 144-407 (413)
24 PF10255 Paf67: RNA polymerase 96.6 0.042 9.1E-07 56.4 14.0 282 24-342 7-343 (404)
25 PF09976 TPR_21: Tetratricopep 96.6 0.022 4.7E-07 49.7 10.0 97 106-213 48-144 (145)
26 PF10075 PCI_Csn8: COP9 signal 96.2 0.042 9.1E-07 48.1 9.5 72 273-344 49-121 (143)
27 PF14938 SNAP: Soluble NSF att 94.8 0.41 8.8E-06 46.6 11.9 192 23-222 34-232 (282)
28 KOG2076|consensus 94.5 2 4.3E-05 47.7 17.3 145 110-271 177-327 (895)
29 PF09012 FeoC: FeoC like trans 94.1 0.09 1.9E-06 40.2 4.5 48 311-358 5-52 (69)
30 cd00189 TPR Tetratricopeptide 93.8 0.96 2.1E-05 33.3 9.9 94 109-215 3-96 (100)
31 TIGR02795 tol_pal_ybgF tol-pal 93.3 0.49 1.1E-05 38.4 8.0 102 108-216 4-105 (119)
32 PF04348 LppC: LppC putative l 92.1 0.043 9.4E-07 58.6 0.0 106 103-215 21-126 (536)
33 PF13424 TPR_12: Tetratricopep 92.0 0.53 1.1E-05 36.0 6.1 69 105-175 4-74 (78)
34 PF13424 TPR_12: Tetratricopep 91.9 0.93 2E-05 34.5 7.4 69 146-214 4-73 (78)
35 PF09976 TPR_21: Tetratricopep 91.8 5.8 0.00013 34.3 13.2 61 105-173 84-144 (145)
36 PF03399 SAC3_GANP: SAC3/GANP/ 91.7 4.2 9.2E-05 37.2 12.9 104 225-332 99-204 (204)
37 PF09756 DDRGK: DDRGK domain; 91.5 0.36 7.8E-06 44.5 5.3 52 314-365 107-158 (188)
38 PF08784 RPA_C: Replication pr 91.0 0.23 5.1E-06 40.8 3.3 37 320-356 65-101 (102)
39 COG3063 PilF Tfp pilus assembl 90.8 6.5 0.00014 37.5 13.0 140 103-257 32-172 (250)
40 COG3107 LppC Putative lipoprot 89.7 3.6 7.9E-05 43.5 11.3 117 87-214 47-163 (604)
41 PF13432 TPR_16: Tetratricopep 88.1 1.9 4.1E-05 31.6 6.1 57 111-174 2-58 (65)
42 TIGR02521 type_IV_pilW type IV 88.1 4.3 9.4E-05 36.1 9.7 99 105-216 30-128 (234)
43 KOG1840|consensus 88.0 6.1 0.00013 42.0 11.9 128 84-214 219-352 (508)
44 PF10345 Cohesin_load: Cohesin 87.9 40 0.00088 36.6 18.6 128 85-217 38-169 (608)
45 PRK11788 tetratricopeptide rep 87.7 7 0.00015 39.0 11.8 104 105-216 106-209 (389)
46 KOG2300|consensus 87.7 37 0.00079 35.9 16.7 134 70-209 12-149 (629)
47 PRK11788 tetratricopeptide rep 87.3 6.5 0.00014 39.2 11.3 101 107-216 70-170 (389)
48 PF13414 TPR_11: TPR repeat; P 86.7 1.6 3.5E-05 32.2 5.1 61 106-173 3-64 (69)
49 PF12895 Apc3: Anaphase-promot 86.0 3.4 7.3E-05 32.1 6.8 82 119-212 2-83 (84)
50 TIGR02521 type_IV_pilW type IV 85.9 6.8 0.00015 34.8 9.7 95 109-214 102-196 (234)
51 PRK02603 photosystem I assembl 85.6 5.6 0.00012 35.4 8.9 68 105-176 34-101 (172)
52 PF12802 MarR_2: MarR family; 85.6 3.2 6.9E-05 30.2 6.1 52 308-359 7-60 (62)
53 CHL00033 ycf3 photosystem I as 85.3 13 0.00028 32.7 11.1 103 105-211 34-137 (168)
54 PF14559 TPR_19: Tetratricopep 85.1 2.6 5.6E-05 31.0 5.5 53 117-176 2-54 (68)
55 KOG1585|consensus 84.9 19 0.00041 34.9 12.1 106 147-257 150-255 (308)
56 KOG3081|consensus 84.9 28 0.00061 34.0 13.4 90 110-215 112-201 (299)
57 PRK15431 ferrous iron transpor 84.3 2.6 5.5E-05 33.2 5.1 41 312-352 8-48 (78)
58 PF12895 Apc3: Anaphase-promot 84.2 4.9 0.00011 31.1 6.9 60 106-173 25-84 (84)
59 PF02082 Rrf2: Transcriptional 84.2 6.5 0.00014 30.9 7.6 53 321-373 26-78 (83)
60 TIGR02552 LcrH_SycD type III s 83.9 13 0.00028 31.0 10.0 97 107-216 18-114 (135)
61 TIGR03302 OM_YfiO outer membra 83.8 13 0.00028 34.4 10.8 109 100-216 27-144 (235)
62 KOG2003|consensus 83.3 25 0.00055 36.8 13.1 162 46-232 539-701 (840)
63 PF13412 HTH_24: Winged helix- 83.3 4.8 0.0001 27.9 5.9 34 318-351 15-48 (48)
64 KOG2003|consensus 81.2 9.9 0.00021 39.7 9.3 88 116-216 534-621 (840)
65 PF04733 Coatomer_E: Coatomer 81.1 58 0.0013 32.0 17.5 127 108-256 104-233 (290)
66 KOG1840|consensus 80.9 11 0.00024 40.1 10.0 111 104-215 281-395 (508)
67 PF04733 Coatomer_E: Coatomer 79.9 6.2 0.00013 38.8 7.3 197 27-253 51-264 (290)
68 COG2956 Predicted N-acetylgluc 79.9 72 0.0016 32.2 16.5 101 107-215 142-242 (389)
69 cd05804 StaR_like StaR_like; a 79.8 9.7 0.00021 37.5 8.9 100 107-215 115-214 (355)
70 smart00550 Zalpha Z-DNA-bindin 79.8 6.5 0.00014 29.9 5.9 32 321-352 23-54 (68)
71 COG2956 Predicted N-acetylgluc 79.8 38 0.00083 34.1 12.5 71 95-173 63-133 (389)
72 PF01047 MarR: MarR family; I 79.6 5.5 0.00012 28.8 5.3 52 308-359 5-56 (59)
73 PF08220 HTH_DeoR: DeoR-like h 79.0 6.6 0.00014 28.7 5.5 47 314-364 8-54 (57)
74 cd00090 HTH_ARSR Arsenical Res 78.7 12 0.00026 27.4 7.2 44 321-364 21-64 (78)
75 PF09295 ChAPs: ChAPs (Chs5p-A 78.6 16 0.00035 37.7 10.1 124 65-211 169-292 (395)
76 PF13414 TPR_11: TPR repeat; P 77.3 10 0.00022 27.8 6.3 64 146-215 2-66 (69)
77 PRK11189 lipoprotein NlpI; Pro 77.0 25 0.00054 34.3 10.7 101 103-216 61-161 (296)
78 TIGR02795 tol_pal_ybgF tol-pal 76.8 7.9 0.00017 31.0 6.1 67 106-176 39-105 (119)
79 KOG2076|consensus 76.6 8.5 0.00018 43.0 7.7 112 91-214 399-510 (895)
80 smart00419 HTH_CRP helix_turn_ 76.0 5.8 0.00013 27.0 4.3 32 320-351 8-39 (48)
81 KOG3785|consensus 75.1 47 0.001 33.9 11.7 105 104-215 55-179 (557)
82 PF13176 TPR_7: Tetratricopept 74.5 3.4 7.3E-05 27.0 2.6 22 110-131 3-24 (36)
83 PF13545 HTH_Crp_2: Crp-like h 74.5 7.2 0.00016 29.6 4.9 45 319-367 27-71 (76)
84 TIGR02917 PEP_TPR_lipo putativ 74.1 44 0.00095 36.4 12.7 101 103-216 122-222 (899)
85 cd00092 HTH_CRP helix_turn_hel 73.4 6.6 0.00014 28.8 4.3 34 319-352 24-57 (67)
86 PRK10370 formate-dependent nit 73.3 59 0.0013 29.8 11.6 97 107-216 74-173 (198)
87 PF03704 BTAD: Bacterial trans 73.1 10 0.00022 32.5 6.1 79 92-177 48-126 (146)
88 COG3118 Thioredoxin domain-con 72.6 1.1E+02 0.0023 30.5 15.3 122 106-243 168-291 (304)
89 smart00418 HTH_ARSR helix_turn 72.5 16 0.00035 25.8 6.2 46 318-363 8-53 (66)
90 TIGR03879 near_KaiC_dom probab 72.0 5.3 0.00012 31.1 3.5 37 314-350 26-62 (73)
91 KOG1861|consensus 71.9 95 0.0021 32.7 13.4 169 120-333 321-491 (540)
92 TIGR01610 phage_O_Nterm phage 71.7 18 0.00038 29.3 6.8 46 317-364 44-89 (95)
93 PF00325 Crp: Bacterial regula 71.4 8.2 0.00018 25.1 3.7 30 321-350 3-32 (32)
94 PF13432 TPR_16: Tetratricopep 71.1 18 0.0004 26.1 6.3 58 152-215 2-59 (65)
95 PF10345 Cohesin_load: Cohesin 70.7 86 0.0019 34.1 13.8 139 122-264 37-178 (608)
96 TIGR00990 3a0801s09 mitochondr 70.5 52 0.0011 35.5 12.2 99 105-216 330-428 (615)
97 TIGR00540 hemY_coli hemY prote 70.5 76 0.0017 32.4 12.8 98 105-211 262-359 (409)
98 TIGR02337 HpaR homoprotocatech 70.5 60 0.0013 26.8 10.1 52 308-359 30-81 (118)
99 PRK11447 cellulose synthase su 69.9 26 0.00057 41.1 10.3 98 106-216 603-700 (1157)
100 smart00344 HTH_ASNC helix_turn 69.4 14 0.00031 30.0 5.9 35 317-351 14-48 (108)
101 KOG3250|consensus 69.1 9.6 0.00021 35.9 5.1 80 316-395 105-192 (258)
102 TIGR03302 OM_YfiO outer membra 69.0 37 0.0008 31.3 9.4 106 107-216 71-195 (235)
103 PRK10747 putative protoheme IX 68.7 1.3E+02 0.0029 30.5 14.1 98 113-222 125-222 (398)
104 TIGR02917 PEP_TPR_lipo putativ 68.4 25 0.00054 38.3 9.2 99 106-216 90-188 (899)
105 PF12728 HTH_17: Helix-turn-he 68.0 8.7 0.00019 26.9 3.8 46 321-373 2-47 (51)
106 PRK14574 hmsH outer membrane p 67.9 1.2E+02 0.0026 34.4 14.5 96 107-216 103-198 (822)
107 PRK15359 type III secretion sy 67.8 30 0.00066 29.9 7.9 93 111-216 29-121 (144)
108 KOG3054|consensus 67.6 14 0.00031 35.3 6.0 52 314-365 208-259 (299)
109 smart00420 HTH_DEOR helix_turn 67.5 15 0.00033 25.1 5.0 34 319-352 13-46 (53)
110 PF13371 TPR_9: Tetratricopept 67.5 10 0.00022 28.1 4.3 55 155-215 3-57 (73)
111 TIGR02010 IscR iron-sulfur clu 67.3 22 0.00048 30.5 6.9 47 320-366 25-71 (135)
112 TIGR03504 FimV_Cterm FimV C-te 66.6 5.4 0.00012 27.9 2.3 25 109-133 2-26 (44)
113 PRK11447 cellulose synthase su 65.8 22 0.00048 41.7 8.6 91 109-216 576-666 (1157)
114 PF12688 TPR_5: Tetratrico pep 65.7 54 0.0012 27.8 8.8 100 108-214 3-102 (120)
115 KOG1129|consensus 65.6 57 0.0012 33.0 9.9 95 108-216 225-319 (478)
116 PLN03088 SGT1, suppressor of 65.6 38 0.00081 34.2 9.2 93 111-216 7-99 (356)
117 PRK11169 leucine-responsive tr 65.5 18 0.00039 32.3 6.1 45 311-355 19-66 (164)
118 PRK09782 bacteriophage N4 rece 65.2 51 0.0011 38.2 11.1 92 108-216 46-137 (987)
119 smart00345 HTH_GNTR helix_turn 65.2 17 0.00036 25.7 4.9 32 320-351 19-51 (60)
120 PF13174 TPR_6: Tetratricopept 64.7 8.4 0.00018 23.7 2.8 25 109-133 3-27 (33)
121 KOG4414|consensus 64.2 13 0.00027 33.0 4.6 40 302-341 114-153 (197)
122 PF13181 TPR_8: Tetratricopept 63.6 12 0.00026 23.3 3.5 25 107-131 2-26 (34)
123 PF04545 Sigma70_r4: Sigma-70, 63.2 23 0.00049 24.7 5.2 31 316-346 16-46 (50)
124 smart00347 HTH_MARR helix_turn 63.2 52 0.0011 25.6 8.0 41 319-359 23-63 (101)
125 PRK11179 DNA-binding transcrip 63.0 21 0.00046 31.4 6.1 38 319-356 22-62 (153)
126 PF01325 Fe_dep_repress: Iron 62.9 24 0.00052 26.1 5.4 34 318-351 20-53 (60)
127 PF13428 TPR_14: Tetratricopep 62.8 9.4 0.0002 25.9 3.0 26 108-133 3-28 (44)
128 PF04703 FaeA: FaeA-like prote 62.4 15 0.00033 27.6 4.2 34 318-351 13-46 (62)
129 KOG3060|consensus 62.2 1E+02 0.0022 30.1 10.7 114 85-218 72-185 (289)
130 PF09339 HTH_IclR: IclR helix- 61.9 14 0.0003 26.2 3.9 37 315-351 13-49 (52)
131 PF07721 TPR_4: Tetratricopept 61.0 12 0.00027 22.5 3.0 24 107-130 2-25 (26)
132 TIGR02944 suf_reg_Xantho FeS a 60.8 15 0.00033 31.2 4.6 41 319-359 24-64 (130)
133 TIGR00540 hemY_coli hemY prote 60.7 1.8E+02 0.004 29.6 13.4 94 111-216 123-216 (409)
134 PRK10049 pgaA outer membrane p 60.2 64 0.0014 36.1 10.6 102 109-216 313-422 (765)
135 TIGR00990 3a0801s09 mitochondr 60.0 56 0.0012 35.3 9.9 98 106-216 365-462 (615)
136 TIGR01764 excise DNA binding d 59.5 19 0.00041 24.3 4.2 45 321-372 2-46 (49)
137 PRK10049 pgaA outer membrane p 59.4 53 0.0011 36.7 9.8 99 105-216 358-456 (765)
138 PRK09954 putative kinase; Prov 59.4 26 0.00057 35.1 6.8 54 311-364 8-64 (362)
139 PRK11014 transcriptional repre 59.2 46 0.00099 28.8 7.4 48 319-366 24-71 (141)
140 KOG3785|consensus 58.7 99 0.0022 31.7 10.3 129 74-215 355-489 (557)
141 PRK10803 tol-pal system protei 58.6 30 0.00066 33.5 6.8 92 117-216 154-246 (263)
142 TIGR00738 rrf2_super rrf2 fami 58.5 27 0.00059 29.5 5.8 42 320-361 25-66 (132)
143 PRK11920 rirA iron-responsive 58.5 38 0.00082 30.0 6.9 42 320-361 24-65 (153)
144 KOG2300|consensus 58.2 2.6E+02 0.0057 29.9 17.8 145 86-235 345-493 (629)
145 KOG2002|consensus 57.8 77 0.0017 36.2 10.3 98 110-216 274-371 (1018)
146 PF09295 ChAPs: ChAPs (Chs5p-A 57.6 1.2E+02 0.0025 31.4 11.2 96 105-216 168-263 (395)
147 PF12569 NARP1: NMDA receptor- 57.4 2.7E+02 0.0059 29.8 16.2 62 108-176 196-257 (517)
148 cd07377 WHTH_GntR Winged helix 57.2 35 0.00075 24.5 5.5 30 322-351 27-56 (66)
149 cd00189 TPR Tetratricopeptide 56.9 54 0.0012 23.4 6.7 62 149-216 2-63 (100)
150 PRK10747 putative protoheme IX 56.9 1.7E+02 0.0036 29.9 12.3 94 111-216 89-182 (398)
151 TIGR02552 LcrH_SycD type III s 56.8 75 0.0016 26.2 8.2 65 106-177 51-115 (135)
152 cd05804 StaR_like StaR_like; a 56.3 40 0.00088 33.0 7.5 65 107-174 149-213 (355)
153 PRK10857 DNA-binding transcrip 56.2 49 0.0011 29.7 7.2 48 319-366 24-71 (164)
154 COG1959 Predicted transcriptio 56.1 36 0.00078 30.0 6.3 45 320-364 25-69 (150)
155 CHL00033 ycf3 photosystem I as 56.0 56 0.0012 28.7 7.6 89 120-216 13-101 (168)
156 COG1497 Predicted transcriptio 55.4 56 0.0012 31.4 7.6 63 319-384 24-88 (260)
157 PF07719 TPR_2: Tetratricopept 55.1 22 0.00047 21.9 3.6 26 107-132 2-27 (34)
158 PRK13777 transcriptional regul 55.0 1.6E+02 0.0034 27.1 10.5 54 307-360 46-99 (185)
159 PF13371 TPR_9: Tetratricopept 54.8 42 0.0009 24.7 5.7 16 199-214 7-22 (73)
160 COG2976 Uncharacterized protei 54.2 1.7E+02 0.0037 27.4 10.4 117 86-216 70-188 (207)
161 PF04492 Phage_rep_O: Bacterio 53.8 24 0.00052 29.2 4.4 35 316-350 50-84 (100)
162 PF13429 TPR_15: Tetratricopep 53.6 53 0.0011 31.4 7.6 22 110-131 150-171 (280)
163 PF13374 TPR_10: Tetratricopep 53.5 21 0.00046 22.9 3.5 27 106-132 2-28 (42)
164 PF04967 HTH_10: HTH DNA bindi 53.1 24 0.00053 25.6 3.9 26 320-345 23-48 (53)
165 PF14559 TPR_19: Tetratricopep 53.0 23 0.00049 25.7 3.9 30 106-135 25-54 (68)
166 PF09613 HrpB1_HrpK: Bacterial 52.8 54 0.0012 29.5 6.8 64 64-134 6-72 (160)
167 PF10300 DUF3808: Protein of u 52.8 76 0.0017 33.4 9.1 105 119-237 246-350 (468)
168 PF13429 TPR_15: Tetratricopep 52.6 33 0.00072 32.8 6.0 94 110-216 82-175 (280)
169 COG3355 Predicted transcriptio 52.5 74 0.0016 27.5 7.3 91 263-383 15-118 (126)
170 PF01022 HTH_5: Bacterial regu 52.0 34 0.00073 23.7 4.4 33 319-351 14-46 (47)
171 PF13404 HTH_AsnC-type: AsnC-t 51.7 38 0.00083 23.2 4.5 26 319-344 16-41 (42)
172 KOG1586|consensus 51.7 2.4E+02 0.0051 27.4 11.6 133 103-237 31-167 (288)
173 KOG3060|consensus 51.5 2.5E+02 0.0053 27.5 12.3 64 106-174 154-218 (289)
174 PLN03088 SGT1, suppressor of 50.3 89 0.0019 31.5 8.9 82 106-196 36-117 (356)
175 PLN03218 maturation of RBCL 1; 50.2 4.9E+02 0.011 30.6 25.8 98 110-216 546-643 (1060)
176 PF13181 TPR_8: Tetratricopept 50.0 31 0.00066 21.4 3.7 28 148-175 2-29 (34)
177 PRK10803 tol-pal system protei 49.9 72 0.0016 30.9 7.8 63 151-216 147-209 (263)
178 PF13463 HTH_27: Winged helix 49.8 54 0.0012 23.9 5.6 43 316-358 14-56 (68)
179 PF02259 FAT: FAT domain; Int 49.6 2.5E+02 0.0055 27.2 17.6 146 67-215 107-286 (352)
180 PF12854 PPR_1: PPR repeat 48.7 21 0.00045 23.0 2.7 24 110-133 11-34 (34)
181 COG1522 Lrp Transcriptional re 48.5 43 0.00092 28.9 5.5 38 319-356 21-61 (154)
182 PF12840 HTH_20: Helix-turn-he 48.2 68 0.0015 23.3 5.8 37 316-352 20-56 (61)
183 KOG1155|consensus 48.1 36 0.00079 35.8 5.6 64 110-175 470-535 (559)
184 PRK11512 DNA-binding transcrip 48.0 57 0.0012 28.1 6.2 43 318-360 52-94 (144)
185 PF05584 Sulfolobus_pRN: Sulfo 47.5 76 0.0016 24.7 5.9 43 308-352 8-50 (72)
186 PF08279 HTH_11: HTH domain; 47.1 29 0.00063 24.5 3.5 28 321-348 16-43 (55)
187 PF09986 DUF2225: Uncharacteri 46.6 1.9E+02 0.0041 27.0 9.9 79 141-221 112-199 (214)
188 PRK13509 transcriptional repre 45.8 49 0.0011 31.7 5.9 42 310-351 9-50 (251)
189 KOG0543|consensus 45.7 1.6E+02 0.0034 30.4 9.6 170 41-216 135-320 (397)
190 PF06163 DUF977: Bacterial pro 45.1 1.4E+02 0.003 25.8 7.8 62 313-379 19-81 (127)
191 PRK15174 Vi polysaccharide exp 44.5 2.6E+02 0.0056 30.7 12.0 97 107-216 285-381 (656)
192 PRK10411 DNA-binding transcrip 44.4 54 0.0012 31.2 5.9 43 310-352 8-50 (240)
193 PF12793 SgrR_N: Sugar transpo 43.2 1.7E+02 0.0037 24.6 8.2 86 318-405 17-107 (115)
194 PF01978 TrmB: Sugar-specific 43.1 36 0.00078 25.3 3.6 39 318-356 20-58 (68)
195 PRK14574 hmsH outer membrane p 42.9 5.6E+02 0.012 29.2 14.6 141 54-216 294-445 (822)
196 PRK10046 dpiA two-component re 41.4 61 0.0013 29.9 5.7 45 312-356 169-213 (225)
197 PF08281 Sigma70_r4_2: Sigma-7 40.7 58 0.0012 22.8 4.3 30 316-345 22-51 (54)
198 PF13730 HTH_36: Helix-turn-he 40.1 45 0.00098 23.5 3.6 29 322-350 27-55 (55)
199 PF13613 HTH_Tnp_4: Helix-turn 39.8 63 0.0014 23.0 4.3 40 307-346 6-45 (53)
200 PRK10434 srlR DNA-bindng trans 39.8 57 0.0012 31.3 5.4 43 308-350 7-49 (256)
201 PLN03081 pentatricopeptide (PP 39.4 1.2E+02 0.0026 33.3 8.5 89 112-215 468-556 (697)
202 KOG1125|consensus 39.1 3.2E+02 0.0069 29.6 10.9 128 108-255 432-568 (579)
203 PF08349 DUF1722: Protein of u 39.0 2E+02 0.0042 24.1 7.9 44 67-110 54-97 (117)
204 PF09743 DUF2042: Uncharacteri 38.7 59 0.0013 31.8 5.2 39 319-357 129-167 (272)
205 COG3629 DnrI DNA-binding trans 38.5 1.5E+02 0.0032 29.2 7.9 78 93-177 140-217 (280)
206 KOG2034|consensus 38.3 3.2E+02 0.007 31.1 11.2 54 153-215 364-417 (911)
207 smart00346 HTH_ICLR helix_turn 37.9 56 0.0012 25.4 4.2 34 319-352 19-52 (91)
208 PRK09782 bacteriophage N4 rece 37.7 7.2E+02 0.016 29.0 16.3 84 193-288 188-271 (987)
209 PRK03573 transcriptional regul 37.7 2.6E+02 0.0056 23.8 8.9 42 319-360 45-86 (144)
210 PRK13918 CRP/FNR family transc 37.7 64 0.0014 29.0 5.1 49 320-372 149-197 (202)
211 PF11873 DUF3393: Domain of un 36.8 16 0.00034 34.2 0.9 68 224-293 109-177 (204)
212 COG5010 TadD Flp pilus assembl 36.6 2.2E+02 0.0047 27.7 8.6 94 110-216 70-163 (257)
213 KOG1586|consensus 36.4 4.1E+02 0.0089 25.8 14.5 57 111-169 59-115 (288)
214 PRK04841 transcriptional regul 35.5 2.1E+02 0.0045 32.2 9.8 106 109-215 494-601 (903)
215 PRK12370 invasion protein regu 35.4 3.6E+02 0.0079 28.8 11.2 97 106-215 338-434 (553)
216 PF10078 DUF2316: Uncharacteri 35.2 44 0.00096 27.1 3.1 25 318-342 21-45 (89)
217 PF00392 GntR: Bacterial regul 34.8 87 0.0019 22.9 4.6 35 318-352 21-56 (64)
218 smart00421 HTH_LUXR helix_turn 34.7 1E+02 0.0022 21.0 4.8 29 317-345 15-43 (58)
219 PF12964 DUF3853: Protein of u 34.6 28 0.0006 28.5 1.9 41 322-366 47-87 (96)
220 cd06170 LuxR_C_like C-terminal 34.6 79 0.0017 21.7 4.2 29 317-345 12-40 (57)
221 PF01726 LexA_DNA_bind: LexA D 34.5 76 0.0016 23.9 4.2 31 321-351 26-57 (65)
222 TIGR02561 HrpB1_HrpK type III 34.4 1.1E+02 0.0023 27.4 5.7 85 63-155 5-92 (153)
223 PRK04424 fatty acid biosynthes 34.3 53 0.0011 30.0 4.0 44 307-350 8-51 (185)
224 COG4235 Cytochrome c biogenesi 34.2 4.7E+02 0.01 25.8 10.9 109 111-233 161-272 (287)
225 KOG4318|consensus 34.1 4.9E+02 0.011 30.0 11.7 108 112-229 713-822 (1088)
226 PRK15174 Vi polysaccharide exp 33.8 2.2E+02 0.0047 31.3 9.3 98 106-216 246-347 (656)
227 COG3413 Predicted DNA binding 33.7 50 0.0011 30.7 3.8 27 319-345 177-203 (215)
228 KOG2002|consensus 33.7 45 0.00099 37.9 3.9 90 114-214 654-743 (1018)
229 PRK12792 flhA flagellar biosyn 33.5 2.1E+02 0.0045 31.8 8.9 75 26-119 517-591 (694)
230 KOG1585|consensus 33.3 4.7E+02 0.01 25.6 11.1 69 145-214 89-177 (308)
231 TIGR01884 cas_HTH CRISPR locus 33.0 1.8E+02 0.004 26.6 7.5 37 319-355 156-192 (203)
232 COG1729 Uncharacterized protei 32.8 74 0.0016 31.0 4.8 100 109-216 144-244 (262)
233 TIGR02702 SufR_cyano iron-sulf 32.8 3.9E+02 0.0084 24.4 10.9 37 317-353 12-48 (203)
234 PF07064 RIC1: RIC1; InterPro 32.1 4.1E+02 0.0089 25.7 9.9 125 43-171 114-244 (258)
235 PF00515 TPR_1: Tetratricopept 32.0 90 0.002 19.2 3.7 27 148-174 2-28 (34)
236 PRK14720 transcript cleavage f 31.6 2E+02 0.0042 33.1 8.5 97 105-210 30-126 (906)
237 PRK11050 manganese transport r 31.6 2.1E+02 0.0046 25.0 7.3 35 319-353 50-84 (152)
238 KOG2376|consensus 31.5 6.6E+02 0.014 27.5 11.8 106 108-215 378-486 (652)
239 PRK06012 flhA flagellar biosyn 31.4 2.1E+02 0.0045 32.0 8.5 75 26-119 519-593 (697)
240 PLN03077 Protein ECB2; Provisi 30.9 2.2E+02 0.0047 32.2 9.0 57 113-174 596-652 (857)
241 PLN03081 pentatricopeptide (PP 30.9 6.6E+02 0.014 27.5 12.6 55 110-174 364-418 (697)
242 PF13428 TPR_14: Tetratricopep 30.8 83 0.0018 21.1 3.6 29 148-176 2-30 (44)
243 PRK04778 septation ring format 30.6 7.2E+02 0.015 26.8 14.2 96 93-189 463-561 (569)
244 PF13512 TPR_18: Tetratricopep 30.5 3.8E+02 0.0082 23.6 9.8 60 111-174 15-74 (142)
245 COG4367 Uncharacterized protei 30.4 62 0.0013 26.1 3.1 25 318-342 21-45 (97)
246 PRK02603 photosystem I assembl 30.3 2E+02 0.0044 25.2 7.0 71 143-216 31-101 (172)
247 PF08679 DsrD: Dissimilatory s 30.2 70 0.0015 24.4 3.3 34 318-351 17-51 (67)
248 PF08672 APC2: Anaphase promot 29.5 62 0.0014 24.1 2.9 24 330-353 31-54 (60)
249 TIGR01398 FlhA flagellar biosy 29.4 2.9E+02 0.0063 30.7 9.1 75 26-119 503-577 (678)
250 KOG1058|consensus 29.4 2.4E+02 0.0052 31.7 8.3 113 12-130 360-476 (948)
251 PRK05910 type III secretion sy 29.1 2.8E+02 0.006 30.2 8.7 75 26-119 411-485 (584)
252 PRK10141 DNA-binding transcrip 28.9 3.6E+02 0.0077 22.8 8.8 39 320-358 30-68 (117)
253 COG1349 GlpR Transcriptional r 28.8 1E+02 0.0023 29.5 5.2 44 309-352 8-51 (253)
254 PRK10906 DNA-binding transcrip 28.6 1.2E+02 0.0025 29.2 5.5 42 310-351 9-50 (252)
255 PF00440 TetR_N: Bacterial reg 28.5 1.2E+02 0.0026 20.7 4.2 22 316-337 12-33 (47)
256 PRK12370 invasion protein regu 28.0 3.1E+02 0.0067 29.3 9.2 97 107-215 373-469 (553)
257 PRK10866 outer membrane biogen 28.0 3.9E+02 0.0084 25.3 8.9 64 105-172 174-237 (243)
258 PF02742 Fe_dep_repr_C: Iron d 27.9 1.2E+02 0.0026 22.9 4.4 19 326-344 22-40 (71)
259 TIGR01399 hrcV type III secret 27.8 3.6E+02 0.0077 30.0 9.5 74 26-119 503-576 (677)
260 PRK10402 DNA-binding transcrip 27.6 1.4E+02 0.003 27.7 5.7 49 321-373 170-218 (226)
261 PF12862 Apc5: Anaphase-promot 27.6 2.7E+02 0.0058 22.0 6.6 67 117-184 9-78 (94)
262 TIGR03697 NtcA_cyano global ni 27.4 93 0.002 27.6 4.4 33 320-352 143-175 (193)
263 KOG2376|consensus 27.4 6.4E+02 0.014 27.6 10.9 109 109-218 113-255 (652)
264 PF01984 dsDNA_bind: Double-st 27.4 33 0.00073 28.7 1.3 22 334-355 61-82 (107)
265 PF13542 HTH_Tnp_ISL3: Helix-t 27.3 95 0.0021 21.5 3.5 28 317-344 24-51 (52)
266 PF12324 HTH_15: Helix-turn-he 27.2 71 0.0015 25.2 3.0 28 318-345 36-63 (77)
267 TIGR00373 conserved hypothetic 26.7 4.5E+02 0.0098 23.3 9.6 70 319-391 27-98 (158)
268 KOG0553|consensus 26.7 5.2E+02 0.011 25.7 9.5 145 192-352 86-250 (304)
269 TIGR01889 Staph_reg_Sar staphy 26.5 2.5E+02 0.0055 22.9 6.5 41 319-359 42-82 (109)
270 PRK10681 DNA-binding transcrip 26.5 1.2E+02 0.0026 29.0 5.1 42 307-348 8-49 (252)
271 cd07311 terB_like_1 tellurium 26.4 2E+02 0.0044 25.4 6.1 101 75-177 14-120 (150)
272 PF06160 EzrA: Septation ring 26.4 8.4E+02 0.018 26.3 12.7 94 95-189 461-558 (560)
273 PF13525 YfiO: Outer membrane 26.3 4.9E+02 0.011 23.6 11.8 64 108-175 7-70 (203)
274 PRK10167 hypothetical protein; 26.2 3E+02 0.0066 24.9 7.3 61 54-114 78-142 (169)
275 KOG1070|consensus 26.1 1.6E+02 0.0034 35.3 6.6 64 108-178 1532-1595(1710)
276 PRK04217 hypothetical protein; 26.1 2.2E+02 0.0047 23.9 5.9 43 317-359 55-104 (110)
277 KOG1155|consensus 26.1 8.1E+02 0.018 26.1 11.1 101 106-215 432-535 (559)
278 PF08311 Mad3_BUB1_I: Mad3/BUB 26.0 4.1E+02 0.0088 22.5 10.1 26 105-130 98-123 (126)
279 PF13518 HTH_28: Helix-turn-he 25.8 1.1E+02 0.0023 21.0 3.6 39 317-356 9-47 (52)
280 TIGR03362 VI_chp_7 type VI sec 25.8 6.6E+02 0.014 24.9 10.3 58 113-175 220-278 (301)
281 PRK04841 transcriptional regul 25.5 5E+02 0.011 29.2 10.7 108 105-214 451-558 (903)
282 KOG2908|consensus 25.5 7.4E+02 0.016 25.3 10.6 124 44-169 54-179 (380)
283 PRK15179 Vi polysaccharide bio 25.4 9.7E+02 0.021 26.7 16.6 135 57-214 81-215 (694)
284 PF04793 Herpes_BBRF1: BRRF1-l 25.4 5E+02 0.011 25.6 9.2 106 2-115 5-111 (284)
285 PF06971 Put_DNA-bind_N: Putat 25.3 77 0.0017 22.7 2.7 25 318-342 26-50 (50)
286 KOG2796|consensus 25.3 2.7E+02 0.0059 27.5 7.1 103 107-218 178-283 (366)
287 PRK15359 type III secretion sy 25.2 2.7E+02 0.0059 23.8 6.8 64 106-176 58-121 (144)
288 KOG1126|consensus 25.0 6.3E+02 0.014 27.8 10.5 68 102-176 313-382 (638)
289 PRK11753 DNA-binding transcrip 24.9 1.1E+02 0.0024 27.6 4.4 32 320-351 168-199 (211)
290 PF04760 IF2_N: Translation in 24.8 68 0.0015 22.8 2.4 24 320-343 3-26 (54)
291 PF10743 Phage_Cox: Regulatory 24.7 3.4E+02 0.0073 21.9 6.4 57 312-380 4-70 (87)
292 COG1747 Uncharacterized N-term 24.5 9.3E+02 0.02 26.1 13.7 32 27-59 102-133 (711)
293 PRK12720 secretion system appa 24.3 4.6E+02 0.01 29.1 9.5 75 25-119 498-572 (675)
294 PF01535 PPR: PPR repeat; Int 24.3 74 0.0016 18.8 2.2 23 111-133 5-27 (31)
295 PRK09802 DNA-binding transcrip 24.3 1.6E+02 0.0034 28.6 5.5 41 311-351 22-62 (269)
296 PRK11189 lipoprotein NlpI; Pro 24.2 4.6E+02 0.01 25.4 8.9 94 107-214 99-192 (296)
297 PRK14165 winged helix-turn-hel 24.2 3.5E+02 0.0075 25.6 7.6 48 318-365 19-66 (217)
298 COG1846 MarR Transcriptional r 24.1 2.6E+02 0.0056 22.2 6.2 36 324-359 40-75 (126)
299 COG3071 HemY Uncharacterized e 24.0 8.2E+02 0.018 25.3 14.0 99 106-216 84-182 (400)
300 PF00771 FHIPEP: FHIPEP family 23.9 3.1E+02 0.0067 30.4 8.2 74 27-119 490-563 (658)
301 smart00028 TPR Tetratricopepti 23.9 1.2E+02 0.0026 16.6 3.1 24 109-132 4-27 (34)
302 PF04327 DUF464: Protein of un 23.7 1.5E+02 0.0033 24.2 4.6 49 350-398 53-101 (103)
303 PF13431 TPR_17: Tetratricopep 23.7 94 0.002 19.9 2.7 21 106-126 13-33 (34)
304 PF13601 HTH_34: Winged helix 23.6 2.4E+02 0.0053 21.9 5.5 42 318-359 12-53 (80)
305 cd04761 HTH_MerR-SF Helix-Turn 23.4 1.2E+02 0.0026 20.4 3.4 38 322-364 2-39 (49)
306 PRK15337 type III secretion sy 23.4 4.2E+02 0.009 29.5 9.0 74 26-119 513-586 (686)
307 PHA02943 hypothetical protein; 23.2 5.5E+02 0.012 23.1 8.7 48 318-366 22-69 (165)
308 PF12569 NARP1: NMDA receptor- 22.9 9.5E+02 0.021 25.7 19.4 72 144-224 191-262 (517)
309 PRK11161 fumarate/nitrate redu 22.9 1.2E+02 0.0026 28.0 4.3 32 320-351 184-215 (235)
310 PF14493 HTH_40: Helix-turn-he 22.7 1.1E+02 0.0025 24.2 3.5 31 319-349 12-42 (91)
311 KOG3616|consensus 22.3 1.1E+02 0.0023 34.3 4.1 77 90-175 1028-1107(1636)
312 PF12755 Vac14_Fab1_bd: Vacuol 22.2 2.3E+02 0.005 23.0 5.3 50 166-215 21-71 (97)
313 PF07749 ERp29: Endoplasmic re 22.2 4.1E+02 0.0089 21.4 6.8 67 45-113 4-73 (95)
314 PF07848 PaaX: PaaX-like prote 22.0 1.2E+02 0.0026 23.2 3.4 30 324-353 27-56 (70)
315 PF08280 HTH_Mga: M protein tr 22.0 2.5E+02 0.0054 20.3 5.0 28 318-345 17-44 (59)
316 KOG2047|consensus 22.0 3.1E+02 0.0067 30.4 7.4 100 22-131 170-273 (835)
317 COG2976 Uncharacterized protei 21.8 6.7E+02 0.015 23.5 9.1 65 105-177 125-189 (207)
318 COG2345 Predicted transcriptio 21.8 2.9E+02 0.0062 26.2 6.5 40 314-353 19-58 (218)
319 PF13384 HTH_23: Homeodomain-l 21.8 83 0.0018 21.6 2.3 34 315-348 12-45 (50)
320 PF02002 TFIIE_alpha: TFIIE al 21.7 1.2E+02 0.0026 24.6 3.6 35 319-353 26-60 (105)
321 PF04539 Sigma70_r3: Sigma-70 21.7 1E+02 0.0022 23.3 3.0 25 319-343 19-43 (78)
322 PF03081 Exo70: Exo70 exocyst 21.5 98 0.0021 31.0 3.6 63 281-344 304-371 (371)
323 PF04079 DUF387: Putative tran 21.5 1.8E+02 0.0038 26.1 4.9 64 306-373 2-68 (159)
324 KOG2072|consensus 21.2 1.1E+03 0.024 27.0 11.5 197 147-352 152-384 (988)
325 COG1321 TroR Mn-dependent tran 20.7 2E+02 0.0043 25.6 5.0 35 317-351 21-55 (154)
326 PRK06266 transcription initiat 20.6 6.1E+02 0.013 23.0 8.3 36 319-354 35-70 (178)
327 KOG3617|consensus 20.4 3.9E+02 0.0084 30.6 7.9 104 107-213 913-1034(1416)
328 cd06171 Sigma70_r4 Sigma70, re 20.4 2.1E+02 0.0046 18.8 4.2 28 318-345 24-51 (55)
329 PRK09334 30S ribosomal protein 20.2 2.7E+02 0.0058 22.4 5.1 43 317-360 38-80 (86)
330 PF07079 DUF1347: Protein of u 20.1 1.1E+03 0.023 25.2 18.5 79 141-234 457-539 (549)
331 smart00342 HTH_ARAC helix_turn 20.1 1.5E+02 0.0032 21.8 3.6 25 320-344 1-25 (84)
No 1
>KOG1497|consensus
Probab=100.00 E-value=5.5e-87 Score=633.05 Aligned_cols=396 Identities=65% Similarity=1.000 Sum_probs=383.7
Q ss_pred HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcch
Q psy7321 4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVA 83 (408)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~ 83 (408)
+.+++++.....+.|+||++.++|+.+|+..++++.. ++.+.+|.|+++++++++++|+|||+++.+...|+.+|++.+
T Consensus 2 ~~~r~eev~~~~~~g~hk~~~~qyr~~l~~~lt~~~~-el~e~~k~~id~~~~~~vslvvsrqllsl~~~~l~~l~~e~~ 80 (399)
T KOG1497|consen 2 AAERSEEVVLIFAEGDHKDQAEQYRQLLAKVLTNNGM-ELLEALKRFIDAIVNENVSLVVSRQLLSLFDVELSILEDELR 80 (399)
T ss_pred hhHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHhccCCHHHH
Confidence 4567777777777889999999999999999988765 489999999999999999999999999999999999999999
Q ss_pred hchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCCh
Q psy7321 84 KPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDP 163 (408)
Q Consensus 84 ~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~ 163 (408)
|+...++|..|+|+.|+||+|++.+|.+||.+||++++|+.||.+|.+|+.+||.+..+.+.|+..|+++.|+||+++|.
T Consensus 81 Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~ 160 (399)
T KOG1497|consen 81 KEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDK 160 (399)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCcc
Q psy7321 164 VQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243 (408)
Q Consensus 164 ~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~~~ILa~~~~~ 243 (408)
+.|+.|+||++.++.+..++++++.|++|+||++|++|+|+|||++||+++.+..+++.++.++|+.++.|++||.+||+
T Consensus 161 veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~~~~~aL~~a~~CtlLA~~gpq 240 (399)
T KOG1497|consen 161 VEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDESERLEALKKALQCTLLASAGPQ 240 (399)
T ss_pred HHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHhheeecCCChH
Confidence 99999999999888777899999999999999999999999999999999998888999999999999999999999999
Q ss_pred hhHHHHhhhcCcccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchhhhHHHHHHHHHHHHHHhccccCCh
Q psy7321 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASKLYNNISF 323 (408)
Q Consensus 244 rs~ll~~l~~d~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~ViEhNi~~isk~Ys~Itl 323 (408)
|+|+|+.+++|||++++|.|..+.|||++++|+.+++++|...|.|||++.+.||+++|.++++||||+.+|++|++|||
T Consensus 241 rsr~Latlfkder~~~l~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~dgssil~ra~~EhNlls~Skly~nisf 320 (399)
T KOG1497|consen 241 RSRMLATLFKDERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMDGSSILDRAVIEHNLLSASKLYNNISF 320 (399)
T ss_pred HHHHHHHHhcCcccccccchHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccCcchhhhhHHHHHhHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhHHHHHHHHHHHHHHHHHHHHhhChhhhhh
Q psy7321 324 PELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSK 400 (408)
Q Consensus 324 ~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W~~~I~~l~~~v~~v~~~i~~~~p~~~~~ 400 (408)
+.||++|++|++++|+++++||.+||++|.|||.+|+|+|++++.++.||.+|+++|+.||++.+.|+..+|+|..-
T Consensus 321 ~~Lg~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~e~l~~wdkqi~sl~~qvNki~~~i~~~~s~~~~~ 397 (399)
T KOG1497|consen 321 EELGALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFEDREELPQWDKQIQSLCNQVNKILDKISHYGSEWAEF 397 (399)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeecchhhhhhhhHHHHHHHHHHHHHHHHHHHhCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999753
No 2
>KOG1498|consensus
Probab=100.00 E-value=1.1e-67 Score=513.58 Aligned_cols=342 Identities=23% Similarity=0.335 Sum_probs=318.7
Q ss_pred HHhhccchhhchHH---------HHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHH
Q psy7321 53 AIVNENVSLVISRQ---------ILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123 (408)
Q Consensus 53 ~~~~e~v~~~~~r~---------iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~ 123 (408)
..|||+|.++++|+ ||+++|.+++++||...+..+++||+.||+||||+|+||||+|..||+++|.+||+.
T Consensus 69 ~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~ 148 (439)
T KOG1498|consen 69 DLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIA 148 (439)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHH
Confidence 57889999999977 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccC-CcHHHHHHHHHHHHHHHHHHHH
Q psy7321 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAET-KDETLQVHYKVCYARVLDYRRK 202 (408)
Q Consensus 124 eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~-~~~~lk~~y~~~~a~i~~~~r~ 202 (408)
+||++|+++|||| +|+|+.++|++++|+||||||..+||++|.++..|++..+++. ...++|++||.+|.++..+.+.
T Consensus 149 ~Aa~il~el~VET-ygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~ 227 (439)
T KOG1498|consen 149 EAADILCELQVET-YGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRA 227 (439)
T ss_pred HHHHHHHhcchhh-hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999 9999999999999999999999999999999999999887754 4579999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChH--HHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHHH-hhcCcch
Q psy7321 203 FIEAAQRYSELSYKPIIDEA--ERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLD-RIIRKSE 279 (408)
Q Consensus 203 f~eAa~~y~e~~~t~~i~~~--e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~~-~ii~~~~ 279 (408)
|+++|++|++++.+|.+.++ .|...|..++++++|||++++++++++++..|+.+.++|.|..++++|.+ ++++|+.
T Consensus 228 Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~dKkL~e~p~~k~lLklfv~~EL~rw~s 307 (439)
T KOG1498|consen 228 YLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISNDKKLSELPDYKELLKLFVTMELIRWVS 307 (439)
T ss_pred hhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhcccccccCccHHHHHHHHHhcceeeehh
Confidence 99999999999999887664 49999999999999999999999999999999999999999999999987 8999985
Q ss_pred H-HHHHHHhchhhhh-hhcch---hhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEe
Q psy7321 280 L-QDFAALLKPHQKA-ITVDG---SSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYV 354 (408)
Q Consensus 280 l-~~F~~~L~~h~~~-~~~d~---~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akI 354 (408)
+ +.|...+.....+ .+.+| |+.|+.||+|||++++++||++||+.||+.++|+|++++|+++|.||..|.+.|||
T Consensus 308 ~~~~yg~~l~~~~~~~~~~~gek~~~dL~~RIiEHNiRiiA~yYSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKi 387 (439)
T KOG1498|consen 308 LVESYGDELRTNDFFDGGEEGEKRWSDLKLRIIEHNIRIIAKYYSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKI 387 (439)
T ss_pred HhhhhHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEe
Confidence 5 5677777644221 12223 78999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEecCC----CchhhHHHHHHHHHHHHHHHHHHHHhhCh
Q psy7321 355 DQIDSIVHFETR----EILPSWDKQIESLCYRIDHIMEQIETVQP 395 (408)
Q Consensus 355 Dqv~giV~F~~~----~~l~~W~~~I~~l~~~v~~v~~~i~~~~p 395 (408)
|||.|+|.|..+ +.+|.|+.++.+++..+++++|+|+||..
T Consensus 388 drpsgII~F~k~K~~~~~LneW~~nve~L~~ll~K~~HLI~KEem 432 (439)
T KOG1498|consen 388 DRPSGIINFQKVKDSNEILNEWASNVEKLLGLLEKVSHLIHKEEM 432 (439)
T ss_pred cCCCceEEEEecccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999976 58999999999999999999999999864
No 3
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-58 Score=435.12 Aligned_cols=340 Identities=20% Similarity=0.326 Sum_probs=312.1
Q ss_pred hhccchhhchHH---------HHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHH
Q psy7321 55 VNENVSLVISRQ---------ILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDA 125 (408)
Q Consensus 55 ~~e~v~~~~~r~---------iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eA 125 (408)
||+.+.++++++ |++.+|++++...|-..+...+++|+.|++|+||+|+||+++|..|..+|+.+||+.+|
T Consensus 71 Lneql~~L~kKhGQlk~sI~~MIq~vmEylKg~~dl~t~i~~ietlr~VtEgkIFvEvERariT~~L~~ikee~Gdi~sA 150 (439)
T COG5071 71 LNEQLVSLFKKHGQLKQSITSMIQHVMEYLKGIDDLKTKINLIETLRTVTEGKIFVEVERARLTQLLSQIKEEQGDIKSA 150 (439)
T ss_pred hhhHHHHHHHHcchHHHHHHHHHHHHHHhccCcccccchHhHHHHHHHHhcCceEEehhHHHHHHHHHHHHHHhcchhHH
Confidence 445566666644 99999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccC-CcHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 126 ANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAET-KDETLQVHYKVCYARVLDYRRKFI 204 (408)
Q Consensus 126 a~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~-~~~~lk~~y~~~~a~i~~~~r~f~ 204 (408)
++++.++|||| +++++..+|+.++|+|+|||+..+||.+|.++..|+..+.++. .-+.++++||.+..++..++|.|+
T Consensus 151 ~Dilcn~pVET-ygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl 229 (439)
T COG5071 151 QDILCNEPVET-YGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYYELKVRIGLHDRAYL 229 (439)
T ss_pred HHHHhcCchhh-ccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHhheeecccHHHH
Confidence 99999999999 9999999999999999999999999999999999998766643 457999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChH--HHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHH-HhhcCcchHH
Q psy7321 205 EAAQRYSELSYKPIIDEA--ERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYL-DRIIRKSELQ 281 (408)
Q Consensus 205 eAa~~y~e~~~t~~i~~~--e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~-~~ii~~~~l~ 281 (408)
++|++|.+++.|..+.++ .|..+|++.+++++|+|+++++.++++++..|-.+.++|.-..+.++|. +++++|+-++
T Consensus 230 ~v~~y~~~vY~t~~~~~d~Akwk~VLS~~v~F~iLtpy~neq~dlvhKi~~d~kl~sl~~~~~lVk~f~vNelmrwp~V~ 309 (439)
T COG5071 230 DVCKYYRAVYDTAVVQEDPAKWKEVLSNVVCFALLTPYDNEQADLLHKINADHKLNSLPLLQQLVKCFIVNELMRWPKVA 309 (439)
T ss_pred HHHHHHHHHHHHHHhccCcccccchhhcceeeEEecccccHHHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHhhhHHH
Confidence 999999999998655444 5999999999999999999999999999999999999999999999995 6999999886
Q ss_pred H-HHHHhchhhhhhhcc----hhhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEecc
Q psy7321 282 D-FAALLKPHQKAITVD----GSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQ 356 (408)
Q Consensus 282 ~-F~~~L~~h~~~~~~d----~~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDq 356 (408)
+ +++.|.....++..| .|.+|.++|+|||+|+|++|||+|+..+|+.++++|++++|+.+|.||..|-++|||+|
T Consensus 310 ~~y~~~l~~~~faF~~e~~~~~w~DL~krviEHN~RvI~~yYSrI~~~rl~~lld~~~s~te~~ISdlVN~G~~yaKiNr 389 (439)
T COG5071 310 EIYGSALRSNVFAFNDEKGEKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLDMSPSETEQFISDLVNKGHFYAKINR 389 (439)
T ss_pred HHhHHHHHhhhhhhccchhhhhHHHHHHHHHHhhHhHHHHHhhhhhHHHHHHHHcCCHHHHHHHHHHHHhcCcEEEEecC
Confidence 4 677777665666443 37899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCC----CchhhHHHHHHHHHHHHHHHHHHHHhhCh
Q psy7321 357 IDSIVHFETR----EILPSWDKQIESLCYRIDHIMEQIETVQP 395 (408)
Q Consensus 357 v~giV~F~~~----~~l~~W~~~I~~l~~~v~~v~~~i~~~~p 395 (408)
|.|||.|+++ +.||.|++|+..++..++++.|+|.||+.
T Consensus 390 pa~Ii~FEK~~n~~~~lneW~~NV~ellgklek~~HLI~KEe~ 432 (439)
T COG5071 390 PAQIISFEKSQNVQEQLNEWGSNVTELLGKLEKVRHLIIKEEM 432 (439)
T ss_pred ccceEEeeccccHHHHHHHhcccHHHHHHHHHHHhHHHhHHHH
Confidence 9999999987 68999999999999999999999999864
No 4
>KOG0687|consensus
Probab=100.00 E-value=4.5e-33 Score=266.24 Aligned_cols=310 Identities=17% Similarity=0.161 Sum_probs=241.8
Q ss_pred cchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccc
Q psy7321 58 NVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETG 137 (408)
Q Consensus 58 ~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~ 137 (408)
+..+..-+..+..+++. ++.....+-+.++...+. -=|.|....-.++|++|++.||.+.|.+.+.. |+
T Consensus 63 ~~~i~~D~~~l~~m~~~-----neeki~eld~~iedaeen--lGE~ev~ea~~~kaeYycqigDkena~~~~~~----t~ 131 (393)
T KOG0687|consen 63 SLVIKLDQDLLNSMKKA-----NEEKIKELDEKIEDAEEN--LGESEVREAMLRKAEYYCQIGDKENALEALRK----TY 131 (393)
T ss_pred hcceeccHHHHHHHHHh-----hHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHH----HH
Confidence 33344445555444432 122223344444444432 22777899999999999999999999999887 55
Q ss_pred cccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7321 138 QKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKP 217 (408)
Q Consensus 138 ~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~ 217 (408)
.++++.+.|+++.+..+|+.+...|..-....+.||+.++.+++||+++++||+|+|.+.++.|||.+||..|.++..|.
T Consensus 132 ~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 132 EKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999998772
Q ss_pred -CCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCccc----CCChhHHHHHHHHHHhhcCcchHHHHHHHhchh-h
Q psy7321 218 -IIDEAERITALKSALICTILASAGQQRSRMLATLFKDERC----QHLPAYSILEKMYLDRIIRKSELQDFAALLKPH-Q 291 (408)
Q Consensus 218 -~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~----~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h-~ 291 (408)
+..--.+..+..|+|+|+++ ..+|.++.+++.+.|++ .++|....++.++++ +++..|...|..- .
T Consensus 212 tS~El~~Y~~~v~Ytv~~g~i---~leR~dlktKVi~~~Evl~vl~~l~~~~q~l~SLY~-----C~Y~~Ff~~L~~~~~ 283 (393)
T KOG0687|consen 212 TSYELMSYETFVRYTVITGLI---ALERVDLKTKVIKCPEVLEVLHKLPSVSQLLNSLYE-----CDYSDFFNDLAAVEA 283 (393)
T ss_pred cceecccHHHHHHHHHHHhhh---eeccchHHhhhcCcHHHHHHhhcCchHHHHHHHHHh-----ccHHHHHHHHHHHHH
Confidence 22222467788888888888 56899999999998875 568888888887766 5666666555211 1
Q ss_pred hhhhcchh--hhHHHHHHHHHHHHHHhc---cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 292 KAITVDGS--SILERAVTEHNLLSASKL---YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 292 ~~~~~d~~--~~L~~~ViEhNi~~isk~---Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
..+..|-. .-.+-.++|.++++++|+ |++++++.||+.||+|++.+++.++++|.+|+|+|+||+++|+|+.++|
T Consensus 284 ~~lk~D~~l~~h~~yyvREMR~rvY~QlLESYrsl~l~~MA~aFgVSVefiDreL~rFI~~grL~ckIDrVnGVVEtNrp 363 (393)
T KOG0687|consen 284 KQLKDDRYLGPHYRYYVREMRRRVYAQLLESYRSLTLESMAKAFGVSVEFIDRELGRFIAAGRLHCKIDRVNGVVETNRP 363 (393)
T ss_pred HhhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHhHHHHhhccCceeeeeecccceeecCCc
Confidence 11111211 234455999999999985 9999999999999999999999999999999999999999999999998
Q ss_pred Cchh-hHHHHHHHHHHHHHHH
Q psy7321 367 EILP-SWDKQIESLCYRIDHI 386 (408)
Q Consensus 367 ~~l~-~W~~~I~~l~~~v~~v 386 (408)
+.-| .+..-|..=+..+|++
T Consensus 364 D~KN~qyq~vikqGd~LLnri 384 (393)
T KOG0687|consen 364 DEKNAQYQAVIKQGDLLLNRI 384 (393)
T ss_pred cccchHHHHHHhhhHHHHHHH
Confidence 6544 4666666555555543
No 5
>KOG1463|consensus
Probab=99.97 E-value=2.9e-29 Score=241.29 Aligned_cols=324 Identities=15% Similarity=0.206 Sum_probs=261.9
Q ss_pred HHHHHHHHHHhhccchhhch---HHHHHHHHHHhcCCCCc--chhchHHHHHhhhc-CccchHHHHHHHHHHHHHHHHHh
Q psy7321 45 ECLNLFVEAIVNENVSLVIS---RQILTDVSTHLVSQPDE--VAKPVSHFTLDKVQ-PRVISFEEQVASIRQHLALIYER 118 (408)
Q Consensus 45 ~~l~~~~~~~~~e~v~~~~~---r~iv~~~~~~l~~l~~~--~~~~~~~~~L~~i~-~~~i~~E~e~a~l~~~LA~~~e~ 118 (408)
++|..+|.++- +-...+++ -.+|+.+++.+..+|+. .+..+|.++++|.+ +++.|+ |..|.-+|+.+|..
T Consensus 65 ~~lr~li~~~R-pf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFL---Rq~Learli~Ly~d 140 (411)
T KOG1463|consen 65 EELRDLITSLR-PFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFL---RQSLEARLIRLYND 140 (411)
T ss_pred hHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHh
Confidence 44555555443 22233333 23999999999999974 67889999999995 888999 99999999999999
Q ss_pred hccHHHHHHHHhcCccccccccCCchh-HHHHHHHHHHHhhhcCChHHHHHHHHHhc---cccccCCcHHHHHHHHHHHH
Q psy7321 119 EENWRDAANVLVGIPLETGQKQYSVDY-KLQTYMKIARLYLEDEDPVQAEAFINRAS---LLQAETKDETLQVHYKVCYA 194 (408)
Q Consensus 119 ~gd~~eAa~~L~~i~~Et~~~~~~~~~-Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~---~~~~~~~~~~lk~~y~~~~a 194 (408)
.++|.+|......+.-|- +.++++. -+++++...+.|...++..+|++.+.-|. +.++ .+|.++...-..-|
T Consensus 141 ~~~YteAlaL~~~L~rEl--KKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY--cpPqlQa~lDLqSG 216 (411)
T KOG1463|consen 141 TKRYTEALALINDLLREL--KKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY--CPPQLQATLDLQSG 216 (411)
T ss_pred hHHHHHHHHHHHHHHHHH--HhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc--cCHHHHHHHHHhcc
Confidence 999999999999988876 7788875 79999999999999999999998854443 4344 46788887544444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCChH-HHHHHHHHHHHHHHhCCCCcchhHHHHhhhc-CcccCCChhHHHHHHHHH
Q psy7321 195 RVLDYRRKFIEAAQRYSELSYK-PIIDEA-ERITALKSALICTILASAGQQRSRMLATLFK-DERCQHLPAYSILEKMYL 271 (408)
Q Consensus 195 ~i~~~~r~f~eAa~~y~e~~~t-~~i~~~-e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~-d~~~~~lp~~~~L~k~f~ 271 (408)
.++..++||..|+.+|+|+|+. .+++.+ .....|+|+++|.|+..-..+-..++..-.. --..+.+.+++....+|-
T Consensus 217 Ilha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~ 296 (411)
T KOG1463|consen 217 ILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFG 296 (411)
T ss_pred ceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhc
Confidence 4455689999999999999987 355554 5789999999999998765555544432211 111245788999999985
Q ss_pred HhhcCcchHHHHHHHhchhhhhhhcch-----hhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 272 DRIIRKSELQDFAALLKPHQKAITVDG-----SSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 272 ~~ii~~~~l~~F~~~L~~h~~~~~~d~-----~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
+ ..++.|...|..|...+..|+ +..|.+.+.|.||..+..||++|.++++|+.+|+|...+|+.+++||.
T Consensus 297 n-----RSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~lLEknl~riIEPyS~Vei~hIA~~IGl~~~~VEkKLsqMIL 371 (411)
T KOG1463|consen 297 N-----RSLKDFEKALADYKKELAEDPIVRSHLQSLYDNLLEKNLCRIIEPYSRVEISHIAEVIGLDVPQVEKKLSQMIL 371 (411)
T ss_pred C-----CcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHHHHHhHHHHcCchhhhhHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 5 689999999999998888886 458999999999999999999999999999999999999999999999
Q ss_pred cCceEEEeccCCcE-EEecCCCchhhHHHHHHHHHHH
Q psy7321 347 EGRMNGYVDQIDSI-VHFETREILPSWDKQIESLCYR 382 (408)
Q Consensus 347 ~grl~akIDqv~gi-V~F~~~~~l~~W~~~I~~l~~~ 382 (408)
++.+.|.+||.+|. |.|+.|.+-+.++..+ ++.+.
T Consensus 372 DKkf~G~LDQg~g~Liv~~e~~~d~~y~~aL-etI~~ 407 (411)
T KOG1463|consen 372 DKKFYGTLDQGEGCLIVFEEPPADNTYDAAL-ETIQN 407 (411)
T ss_pred HHHhhcccccCCCeEEEeCCCCcchHHHHHH-HHHHh
Confidence 99999999999996 8999998888888776 44333
No 6
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.2e-27 Score=223.24 Aligned_cols=285 Identities=15% Similarity=0.141 Sum_probs=222.2
Q ss_pred hhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCC
Q psy7321 83 AKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDED 162 (408)
Q Consensus 83 ~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D 162 (408)
....+-+.|+..++.. =|.|-++.-..+|++|...+|.+.+.+.+.+.- .+.++.+.|+++.|.++||.+..+|
T Consensus 94 ki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~----~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 94 KIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLM----RDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HHHHhcccchhhHHHHHHHHHhhcc
Confidence 3344556666665433 367789999999999999999999999988754 4568899999999999999999999
Q ss_pred hHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChH---HHHHHHHHHHHHHHhCC
Q psy7321 163 PVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEA---ERITALKSALICTILAS 239 (408)
Q Consensus 163 ~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~---e~~~~L~~av~~~ILa~ 239 (408)
-.-.+..+.+++..+..++||+++++||.|+|.+.++.|+|.+||..+.++..| +... .+..+..||++|+++
T Consensus 168 ~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t--F~S~El~sY~~~vrYa~~~Gl~-- 243 (412)
T COG5187 168 RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT--FESSELISYSRAVRYAIFCGLL-- 243 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc--ccccccccHHHHHHHHHHhhhh--
Confidence 999999999999999999999999999999999999999999999999999876 3333 367788899999988
Q ss_pred CCcchhHHHHhhhcCccc----CCChhHH---HHHHHHHH-hh--cCcchHHHHHHHhchhhhhhhcchhhhHHHHHHHH
Q psy7321 240 AGQQRSRMLATLFKDERC----QHLPAYS---ILEKMYLD-RI--IRKSELQDFAALLKPHQKAITVDGSSILERAVTEH 309 (408)
Q Consensus 240 ~~~~rs~ll~~l~~d~~~----~~lp~~~---~L~k~f~~-~i--i~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~ViEh 309 (408)
..+|.++.+++.+.|++ .+-..+. .|..+.+. .. .-+..+.-|...|++.+.-. ...+-.|+|.
T Consensus 244 -~leR~diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~-----rh~d~fvREM 317 (412)
T COG5187 244 -RLERRDIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLG-----RHVDLFVREM 317 (412)
T ss_pred -eeehhhhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHH-----HHHHHHHHHH
Confidence 67999999999999864 2222333 33333222 00 00112334445555443211 1234459999
Q ss_pred HHHHHHhc---cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCc-hhhHHHHHHHHHHHH
Q psy7321 310 NLLSASKL---YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREI-LPSWDKQIESLCYRI 383 (408)
Q Consensus 310 Ni~~isk~---Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~-l~~W~~~I~~l~~~v 383 (408)
+.+++.+. |...+++.||+.||+|++.++.-+.++|-+|+++|.|||++|+|+.++|+. -++++.-+..=|..+
T Consensus 318 RrrvYaQlLESYr~lsl~sMA~tFgVSV~yvdrDLg~FIp~~~LncvIDRvnGvVetnrpdekn~qy~~vVkqGd~ll 395 (412)
T COG5187 318 RRRVYAQLLESYRLLSLESMAQTFGVSVEYVDRDLGEFIPEGRLNCVIDRVNGVVETNRPDEKNQQYSSVVKQGDDLL 395 (412)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCccHHHHhhhHHhhCCCCceeeeeecccceEeccCcchhhhhHHHHHhcchHHH
Confidence 99999985 999999999999999999999999999999999999999999999999854 344555444333333
No 7
>KOG1464|consensus
Probab=99.91 E-value=1.6e-23 Score=197.23 Aligned_cols=262 Identities=20% Similarity=0.303 Sum_probs=219.8
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCcccccccc-CCch-----hHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQ-YSVD-----YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~-~~~~-----~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
..|+++|...|+|.+--++|..++..| +.. -.++ ..+|+|-..+++|-+.+|-.+.+....++-..-+...+|
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SC-q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSC-QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHh-ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 568899999999999999999998877 321 1122 359999999999999999999999988776544455678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHhC-----CCCcchhHHHHhhhc-Ccc
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKP-IIDEAERITALKSALICTILA-----SAGQQRSRMLATLFK-DER 256 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~-~i~~~e~~~~L~~av~~~ILa-----~~~~~rs~ll~~l~~-d~~ 256 (408)
-+....+.|.|.+++.++.|.+|+--|.|+|... .-+...|.+||+|.|++.+|. |++.+.. +-|+ ||+
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA----KPyKNdPE 303 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA----KPYKNDPE 303 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc----CCCCCCHH
Confidence 8899999999999999999999999999999752 223346899999999999997 4444443 5665 343
Q ss_pred cCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchh-----hhHHHHHHHHHHHHHHhccccCChHHHHHHhC
Q psy7321 257 CQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGS-----SILERAVTEHNLLSASKLYNNISFPELGALLQ 331 (408)
Q Consensus 257 ~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~-----~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLg 331 (408)
+-++..|..+|.+ .++.+|++.|+.|+..++.|++ ..|-+.|+-+-+....+||++|.+..+++.|+
T Consensus 304 ---IlAMTnlv~aYQ~-----NdI~eFE~Il~~~~~~IM~DpFIReh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Ln 375 (440)
T KOG1464|consen 304 ---ILAMTNLVAAYQN-----NDIIEFERILKSNRSNIMDDPFIREHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELN 375 (440)
T ss_pred ---HHHHHHHHHHHhc-----ccHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHhhcC
Confidence 4567888888855 7899999999999999998884 58889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC--------CchhhHHHHHHHHHHHHH
Q psy7321 332 ISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR--------EILPSWDKQIESLCYRID 384 (408)
Q Consensus 332 ls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~--------~~l~~W~~~I~~l~~~v~ 384 (408)
+|+.++|..+..+|.+.+|.|+||++++++...+. +.+..|++++.++-..|-
T Consensus 376 v~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~~~s~~k~~~al~kW~~ql~Sl~~~i~ 436 (440)
T KOG1464|consen 376 VPEADVESLLVSCILDDTIDGRIDEVNQYLELDKSKNSGSKLYKALDKWNNQLKSLQSNIV 436 (440)
T ss_pred CCHHHHHHHHHHHHhccccccchHHhhhHhccCccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988753 478899999988766553
No 8
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.2e-23 Score=194.69 Aligned_cols=310 Identities=14% Similarity=0.203 Sum_probs=250.7
Q ss_pred HHHHHHHHhcCCCCc--chhchHHHHHhhh-cCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCc
Q psy7321 67 ILTDVSTHLVSQPDE--VAKPVSHFTLDKV-QPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSV 143 (408)
Q Consensus 67 iv~~~~~~l~~l~~~--~~~~~~~~~L~~i-~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~ 143 (408)
|++.+++.++.-|+. .+..+|..+++|. .+++.|+ |..+.-.|+.+|.+.|.|.+|...+..+.-|- +.+++
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fL---r~~Le~Kli~l~y~~~~YsdalalIn~ll~El--Kk~DD 160 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFL---RLELECKLIYLLYKTGKYSDALALINPLLHEL--KKYDD 160 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--HhhcC
Confidence 899999999988874 6778899999998 6999999 99999999999999999999999988877665 77887
Q ss_pred h-hHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC
Q psy7321 144 D-YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA-ETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKP-IID 220 (408)
Q Consensus 144 ~-~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~-~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~-~i~ 220 (408)
+ .-+++++...+.|.+.++..+++..+.-|..... --.+|.++...-..-|.++.-++||..|+.+|+|+++.. ..+
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~ 240 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK 240 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence 6 4689999999999999999999887654432211 124778887754444444555899999999999999863 222
Q ss_pred h-HHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCccc------CCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhh
Q psy7321 221 E-AERITALKSALICTILASAGQQRSRMLATLFKDERC------QHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKA 293 (408)
Q Consensus 221 ~-~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~------~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~ 293 (408)
. .+....|+|+++..|+... |.++. .+..++.. +.+.++.....+|-+ .++..|...|+++...
T Consensus 241 ~d~kAc~sLkYmlLSkIMlN~---~~evk-~vl~~K~t~~~y~~r~I~am~avaea~~N-----RsL~df~~aL~qY~~e 311 (421)
T COG5159 241 MDVKACVSLKYMLLSKIMLNR---REEVK-AVLRNKNTLKHYDDRMIRAMLAVAEAFGN-----RSLKDFSDALAQYSDE 311 (421)
T ss_pred chHHHHHHHHHHHHHHHHHhh---HHHHH-HHHccchhHhhhhhhhHHHHHHHHHHhCC-----CcHhhHHHHHHHhhHH
Confidence 2 3477899999999998553 34432 23333321 246677777777755 6788999999887777
Q ss_pred hhcch-----hhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE-EEecCCC
Q psy7321 294 ITVDG-----SSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI-VHFETRE 367 (408)
Q Consensus 294 ~~~d~-----~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi-V~F~~~~ 367 (408)
+..|+ ...|...+.|.||..|..||+++.++.+|+.+|++...+|..+++||.++-.+|..||.+|. |.++.|.
T Consensus 312 l~~D~~iRsHl~~LYD~LLe~Nl~kiiEPfs~VeishIa~viGldt~qvEgKLsqMILDKifyG~LDqg~gcLivy~ep~ 391 (421)
T COG5159 312 LHQDSFIRSHLQYLYDVLLEKNLVKIIEPFSVVEISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYGEPA 391 (421)
T ss_pred hccCHHHHHHHHHHHHHHHHhhhhhhcCcceeeehhHHHHHhcccHHHHHHHHHHHHHHHHHHhhhccCCceEEEeCCcc
Confidence 66665 45889999999999999999999999999999999999999999999999999999999996 7778888
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q psy7321 368 ILPSWDKQIESLCYRIDHIMEQIE 391 (408)
Q Consensus 368 ~l~~W~~~I~~l~~~v~~v~~~i~ 391 (408)
.-+.+++.+ +..+.++.|++..-
T Consensus 392 qd~tyd~al-e~v~~l~~vVd~l~ 414 (421)
T COG5159 392 QDNTYDEAL-EQVEALDCVVDSLY 414 (421)
T ss_pred ccchHHHHH-HHHHHhhhHHHHHH
Confidence 888899888 78888888888654
No 9
>KOG2581|consensus
Probab=99.83 E-value=1.1e-18 Score=171.89 Aligned_cols=279 Identities=19% Similarity=0.286 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccC--CchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc
Q psy7321 101 FEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQY--SVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA 178 (408)
Q Consensus 101 ~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~--~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~ 178 (408)
+..=.+.+-.-++-.||..|+...-...|.... -| .++ +...+.-++-...|.||-.+-|.+|...+.|+...-.
T Consensus 164 lD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~l-rt--AtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~ 240 (493)
T KOG2581|consen 164 LDLIAAKLYFYLYLSYELEGRLADIRSFLHALL-RT--ATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEA 240 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH-HH--hhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccc
Confidence 444467888889999999998665555555432 22 122 2334666777899999999999999999999986433
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCh-HHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcc
Q psy7321 179 ETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY-KPIIDE-AERITALKSALICTILASAGQQRSRMLATLFKDER 256 (408)
Q Consensus 179 ~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~-t~~i~~-~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~ 256 (408)
.. +. ...+|.-|.|+|...+.+|.+|..+|+.+.- +|.... .-+.++-+.+++..+|.+..|+|+ ++..|.
T Consensus 241 ~s-nn-e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers-----~F~Qp~ 313 (493)
T KOG2581|consen 241 AS-NN-EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERS-----VFRQPG 313 (493)
T ss_pred cc-cH-HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchh-----hhcCcc
Confidence 22 22 4478888999999999999999999998764 453211 136778888888889999999998 566554
Q ss_pred cCCChhHHHHHHHH-HHhhcCcchHHHHHHHhchhhhhhhcchh----hhHHHHHHHHHHHHHHhccccCChHHHHHHhC
Q psy7321 257 CQHLPAYSILEKMY-LDRIIRKSELQDFAALLKPHQKAITVDGS----SILERAVTEHNLLSASKLYNNISFPELGALLQ 331 (408)
Q Consensus 257 ~~~lp~~~~L~k~f-~~~ii~~~~l~~F~~~L~~h~~~~~~d~~----~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLg 331 (408)
+++ .|.-.| +.+.++.++++.|...+..+...+..||. -.|+.+||...||.||-.|++|++.++|..||
T Consensus 314 ~~k-----sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~ 388 (493)
T KOG2581|consen 314 MRK-----SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNVIKTGIRKISLSYSRISLQDIAKKLG 388 (493)
T ss_pred HHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhheeeeeeeccHHHHHHHhc
Confidence 321 233333 44566779999999999988888888884 37899999999999999999999999999999
Q ss_pred C-CHHHHHHHHHHHHhcCceEEEeccCCcEEEecC-------CCchhhHHHHHHHHHHHHHHHHHHHHhhCh
Q psy7321 332 I-SAAKAEKIASHMICEGRMNGYVDQIDSIVHFET-------REILPSWDKQIESLCYRIDHIMEQIETVQP 395 (408)
Q Consensus 332 l-s~e~~E~~ls~mI~~grl~akIDqv~giV~F~~-------~~~l~~W~~~I~~l~~~v~~v~~~i~~~~p 395 (408)
+ |++++|.++++.|.+|.|.|+||..+|.+.... .++-..|+.+| +.|.++.+..-.-.+-.|
T Consensus 389 l~Seed~EyiVakAIRDGvIea~Id~~~g~m~skE~~diy~t~epQ~~f~~rI-~fCl~LhN~~vkamRyPp 459 (493)
T KOG2581|consen 389 LNSEEDAEYIVAKAIRDGVIEAKIDHEDGFMQSKETFDIYSTREPQTAFDERI-RFCLQLHNEAVKAMRYPP 459 (493)
T ss_pred CCCchhHHHHHHHHHHhccceeeeccccCceehhhhhhhhccCCchhhHhHHH-HHHHHHHHHHHHHhcCCC
Confidence 9 566799999999999999999999999886653 36888899999 888888876655555444
No 10
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.64 E-value=1.7e-15 Score=124.92 Aligned_cols=100 Identities=29% Similarity=0.479 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHhhcCcchHHHHHHHhchh-hhhhhcch----hhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHH
Q psy7321 261 PAYSILEKMYLDRIIRKSELQDFAALLKPH-QKAITVDG----SSILERAVTEHNLLSASKLYNNISFPELGALLQISAA 335 (408)
Q Consensus 261 p~~~~L~k~f~~~ii~~~~l~~F~~~L~~h-~~~~~~d~----~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e 335 (408)
|.|..|.++|.. +++..|.+.+..| ...+..++ .+.|.+.+++++++.++++|++|++++||+.++++.+
T Consensus 1 ~~~~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~~~ 75 (105)
T PF01399_consen 1 PPYSELLRAFRS-----GDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLSEE 75 (105)
T ss_dssp HHHHHHHHHHHC-----T-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCCHH
T ss_pred CHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccchH
Confidence 778899999865 7899999999988 33333333 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCceEEEeccCCcEEEecC
Q psy7321 336 KAEKIASHMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 336 ~~E~~ls~mI~~grl~akIDqv~giV~F~~ 365 (408)
++|..+++||.+|.|.|+|||++|+|+|++
T Consensus 76 ~vE~~l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 76 EVESILIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence 999999999999999999999999999974
No 11
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=99.63 E-value=3.2e-15 Score=136.35 Aligned_cols=148 Identities=19% Similarity=0.077 Sum_probs=125.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc
Q psy7321 98 VISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ 177 (408)
Q Consensus 98 ~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~ 177 (408)
.-..+++..+....||++|.+.||+++|.+.+..++-. ..+.++++++++.++|++++.+||..+..+++|+...+
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~----~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDY----CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999997654 47899999999999999999999999999999999988
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHhCCCCcchhHHHH
Q psy7321 178 AETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPI-IDEAERITALKSALICTILASAGQQRSRMLA 249 (408)
Q Consensus 178 ~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~-i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~ 249 (408)
..++||+++++++.+.|.+++..|+|.+||+.|.++..+.. ..-.+.+..-..++++++++.++.+|++|..
T Consensus 104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~R~eLk~ 176 (177)
T PF10602_consen 104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLDRSELKK 176 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCCHHHHcc
Confidence 88899999999999999999999999999999999987632 1124444444455555566666889988754
No 12
>KOG2908|consensus
Probab=99.62 E-value=2e-12 Score=125.63 Aligned_cols=272 Identities=17% Similarity=0.200 Sum_probs=185.4
Q ss_pred HHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc-CC-cHHHHHHH
Q psy7321 112 LALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE-TK-DETLQVHY 189 (408)
Q Consensus 112 LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~-~~-~~~lk~~y 189 (408)
+-.+.+..+|..+|.+.|.++.-.+ ...-.+..-+.+...++|++|+.+|...++..+...+..... .+ ++-....|
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~-~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKL-KEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3345567779999999999886555 222223456777789999999999999999998888754432 22 34588999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCcchhHHHH-hhhcCcccCCChhHHH
Q psy7321 190 KVCYARVLDYRRKFIEAA---QRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRMLA-TLFKDERCQHLPAYSI 265 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa---~~y~e~~~t~~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~-~l~~d~~~~~lp~~~~ 265 (408)
|..-+.||-..++|...+ ..|..+++....+++++.+...-..++++|+..--.=..+++ -+++.=...+-.....
T Consensus 160 Y~lssqYyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~d 239 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKD 239 (380)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHH
Confidence 999999999998876554 456666665566777776666667889999863222223322 2222111112233445
Q ss_pred HHHHHHHhhcCcchHHHHHHHhchhhh--hhhcchhhhHHHHHHHHHH--HHHHhc--cccCChHHHHHHhCCCHHHHHH
Q psy7321 266 LEKMYLDRIIRKSELQDFAALLKPHQK--AITVDGSSILERAVTEHNL--LSASKL--YNNISFPELGALLQISAAKAEK 339 (408)
Q Consensus 266 L~k~f~~~ii~~~~l~~F~~~L~~h~~--~~~~d~~~~L~~~ViEhNi--~~isk~--Ys~Itl~~La~lLgls~e~~E~ 339 (408)
++.+| +.+++..|+.....|-. .+.+ ....|..-+.-.-+ .++++| =+.|||+.||+...+|.+++|.
T Consensus 240 ll~Af-----n~Gdl~~f~~l~~~~~~~p~L~~-~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE~ 313 (380)
T KOG2908|consen 240 LLIAF-----NSGDLKRFESLKGVWGKQPDLAS-NEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEVEL 313 (380)
T ss_pred HHHHh-----ccCCHHHHHHHHHHhccCchHHH-HHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHHH
Confidence 55565 44889998876655532 1110 01122222211111 123453 5679999999999999999999
Q ss_pred HHHHHHhcCceEEEeccCCcEEEecCC--------------CchhhHHHHHHHHHHHHHHHHHHH
Q psy7321 340 IASHMICEGRMNGYVDQIDSIVHFETR--------------EILPSWDKQIESLCYRIDHIMEQI 390 (408)
Q Consensus 340 ~ls~mI~~grl~akIDqv~giV~F~~~--------------~~l~~W~~~I~~l~~~v~~v~~~i 390 (408)
.+.+.++-|-|.|.|||++|+|++.+- +.+..|+.+|.++-..|+.-.+.|
T Consensus 314 LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~~~qI~~Mk~rl~~W~~~v~~me~~ve~~~~~i 378 (380)
T KOG2908|consen 314 LVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIVKMKDRLDEWNKDVKSMEGLVEHRGHEI 378 (380)
T ss_pred HHHHHHhccceeeeecccccEEEEecccccccCHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999863 357789999988888887766654
No 13
>KOG0686|consensus
Probab=99.62 E-value=9.6e-14 Score=137.35 Aligned_cols=254 Identities=15% Similarity=0.139 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc--CCc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE--TKD 182 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~--~~~ 182 (408)
..+....|+++|..-|++..|.+.+..++--| .+.++-+.+|+.-||+.+..+||.+.-.|++||...... ...
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC----Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~ 224 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYC----TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLA 224 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhh----cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHH
Confidence 45667889999999999999999999987766 567889999999999999999999999999999765321 112
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCccc----
Q psy7321 183 ETLQVHYKVCYARV-LDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERC---- 257 (408)
Q Consensus 183 ~~lk~~y~~~~a~i-~~~~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~---- 257 (408)
++.-.+.+ |.++. +...++|..|+++|.....+.. +-++...--..+++.++.|.++.+|.+++..+.++..+
T Consensus 225 q~v~~kl~-C~agLa~L~lkkyk~aa~~fL~~~~~~~-d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fl 302 (466)
T KOG0686|consen 225 QEVPAKLK-CAAGLANLLLKKYKSAAKYFLLAEFDHC-DYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFL 302 (466)
T ss_pred HhcCcchH-HHHHHHHHHHHHHHHHHHHHHhCCCCcc-CccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHH
Confidence 23333333 55555 5667899999999998764321 11111111224567777778899999999888887665
Q ss_pred CCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhh--hhhcchhhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHH
Q psy7321 258 QHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQK--AITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAA 335 (408)
Q Consensus 258 ~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~--~~~~d~~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e 335 (408)
.-.|..+.++..|++.=. ...-+..+..+||.. ....+..+.|..-|++.-+..+-.||+++.+.+||..||.|+.
T Consensus 303 el~Pqlr~il~~fy~sky--~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~~sv~ 380 (466)
T KOG0686|consen 303 ELEPQLREILFKFYSSKY--ASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFNTSVA 380 (466)
T ss_pred hcChHHHHHHHHHhhhhH--HHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhcccHH
Confidence 347788888888865100 111111111222211 0011122345556777777777789999999999999999999
Q ss_pred HHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 336 KAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 336 ~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
..|..+-++|.+|.|+||||+.++++.-...
T Consensus 381 ~le~~l~~LI~~~~i~~rIDs~~ki~~~~~~ 411 (466)
T KOG0686|consen 381 ILESELLELILEGKISGRIDSHNKILYARDA 411 (466)
T ss_pred HHHHHHHHHHHccchheeeccccceeeeccc
Confidence 9999999999999999999999999987654
No 14
>smart00753 PAM PCI/PINT associated module.
Probab=99.38 E-value=2.9e-12 Score=103.13 Aligned_cols=67 Identities=36% Similarity=0.577 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 300 SILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 300 ~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
..|.+.++++++..++++|++|++++|++.|++|.+++|..+++||.+|.|.|+|||.+|+|.|.+.
T Consensus 4 ~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~ 70 (88)
T smart00753 4 ERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEV 70 (88)
T ss_pred HHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCC
Confidence 4577889999999999999999999999999999999999999999999999999999999999875
No 15
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=99.38 E-value=2.9e-12 Score=103.13 Aligned_cols=67 Identities=36% Similarity=0.577 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 300 SILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 300 ~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
..|.+.++++++..++++|++|++++|++.|++|.+++|..+++||.+|.|.|+|||.+|+|.|.+.
T Consensus 4 ~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~ 70 (88)
T smart00088 4 ERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEV 70 (88)
T ss_pred HHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCC
Confidence 4577889999999999999999999999999999999999999999999999999999999999875
No 16
>KOG2582|consensus
Probab=99.08 E-value=2.2e-08 Score=98.43 Aligned_cols=212 Identities=21% Similarity=0.306 Sum_probs=144.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHH-HHH-HHHHHHHHHHhCCCCcc----hhHHHHhhhcC
Q psy7321 181 KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAE-RIT-ALKSALICTILASAGQQ----RSRMLATLFKD 254 (408)
Q Consensus 181 ~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e-~~~-~L~~av~~~ILa~~~~~----rs~ll~~l~~d 254 (408)
.++..-+.|.-|.|-++..-++|-.|--.|..+..+|...-.. -.. .=++..++.|+.+.-.+ -+..-.+.++.
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ 256 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKP 256 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhccc
Confidence 3567777777677777888889988888888888777543322 122 22455677777653211 11111222331
Q ss_pred cccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchhhhHHH----HHHHHHHHHHHhccccCChHHHHHHh
Q psy7321 255 ERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILER----AVTEHNLLSASKLYNNISFPELGALL 330 (408)
Q Consensus 255 ~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~----~ViEhNi~~isk~Ys~Itl~~La~lL 330 (408)
-.|+|..+.++|.++ ...+.......|-..++.|+.+-|-+ ..-.|||....|-|+++++++||++.
T Consensus 257 ----ms~pY~ef~~~Y~~~-----~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~v 327 (422)
T KOG2582|consen 257 ----MSNPYHEFLNVYLKD-----SSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRV 327 (422)
T ss_pred ----CCchHHHHHHHHhcC-----CcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 256899999999762 33345667778888889998764443 35579999999999999999999988
Q ss_pred CC-CHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC-C--chhhHHH-HHHHHHHHHHHHHHHHHh---hChhhhhhhh
Q psy7321 331 QI-SAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR-E--ILPSWDK-QIESLCYRIDHIMEQIET---VQPEWLSKKM 402 (408)
Q Consensus 331 gl-s~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~-~--~l~~W~~-~I~~l~~~v~~v~~~i~~---~~p~~~~~~~ 402 (408)
.+ +++++|+++-+||.+|++.+.|| |-|.|... + .-....+ .| .+|.+++...+.... -.|-++.+.|
T Consensus 328 QLa~~qevek~Ilqmie~~~i~a~iN---G~v~f~~n~e~~~SpeM~~nk~-~~~~~L~e~l~~~e~si~l~s~~~~K~m 403 (422)
T KOG2582|consen 328 QLASAQEVEKYILQMIEDGEIFASIN---GMVFFTDNPEKYNSPEMHENKI-DLCIQLIEALKAMEESIRLNSVYVSKSM 403 (422)
T ss_pred HhcchHHHHHHHHHHhccCceEEEec---ceEEEecCcccCCCHHHHhhHH-HHHHHHHHHHHhcchheeeCceeeehhh
Confidence 88 68999999999999999999999 88888642 2 2222222 44 667777666665543 3677776666
Q ss_pred hhh
Q psy7321 403 ADY 405 (408)
Q Consensus 403 ~~~ 405 (408)
-++
T Consensus 404 ~~~ 406 (422)
T KOG2582|consen 404 GSQ 406 (422)
T ss_pred hhh
Confidence 543
No 17
>KOG1076|consensus
Probab=98.46 E-value=3e-05 Score=81.99 Aligned_cols=67 Identities=22% Similarity=0.413 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHH----HHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCC
Q psy7321 301 ILERAVTEHNLLS----ASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETRE 367 (408)
Q Consensus 301 ~L~~~ViEhNi~~----isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~ 367 (408)
-|.++|.|.-||. +|.+|++|+++.||++|+||+..+-.++++||.+.-|.|+.|||.++|.|++.+
T Consensus 695 Ml~~rIqEEsLRTYLftYss~Y~SvSl~~LA~mFdLp~~~VhsIiSkmiineEl~AslDqpt~~iv~hrvE 765 (843)
T KOG1076|consen 695 MLTERIQEESLRTYLFTYSSVYDSVSLAKLADMFDLPEPKVHSIISKMIINEELHASLDQPTQCIVMHRVE 765 (843)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHhCCCchhHHHHHHHHHHHHHhhhccCCCcceEEEeecc
Confidence 5667888877765 678899999999999999999999999999999999999999999999999754
No 18
>KOG2753|consensus
Probab=98.02 E-value=0.0012 Score=64.73 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCCCCCh-HH-HHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCC--hhHHHHHHHHHHhhcCcc
Q psy7321 203 FIEAAQRYSELSYKPIIDE-AE-RITALKSALICTILASAGQQRSRMLATLFKDERCQHL--PAYSILEKMYLDRIIRKS 278 (408)
Q Consensus 203 f~eAa~~y~e~~~t~~i~~-~e-~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~l--p~~~~L~k~f~~~ii~~~ 278 (408)
--++++-+-++..|..-++ ++ +-.+. .+|+-++-+|....=..++ .-|-++++ ..+..|++.|...-+ +
T Consensus 181 ~~~s~kvmt~lLgtyt~dnas~AredA~-rcV~~av~dP~~F~fD~Ll----~L~pV~qLE~d~i~qLL~IF~s~~L--~ 253 (378)
T KOG2753|consen 181 VDESSKVMTELLGTYTEDNASEAREDAM-RCVVEAVKDPKIFLFDHLL----TLPPVKQLEGDLIHQLLKIFVSGKL--D 253 (378)
T ss_pred hhhHHHHHHHHHHHhcccchhHHHHHHH-HHHHHHHcCCceeccchhc----cCchHHHhccchHHHHHHHHHhcch--H
Confidence 4466666666665522222 22 33333 3456666666543322221 11211111 114567777766211 3
Q ss_pred hHHHHHHHhchhhhhhhcchh--hhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEecc
Q psy7321 279 ELQDFAALLKPHQKAITVDGS--SILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQ 356 (408)
Q Consensus 279 ~l~~F~~~L~~h~~~~~~d~~--~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDq 356 (408)
++.+|. +.|..+...-|. ...-+.++---+...+..=..|+++.|++-|.+.++++|-.+.+.|..|-+.|||||
T Consensus 254 aYveF~---~~N~~Fvqs~gl~~E~~~~KMRLLTlm~LA~es~eisy~~l~k~LqI~edeVE~fVIdaI~aklV~~kidq 330 (378)
T KOG2753|consen 254 AYVEFV---AANSGFVQSQGLVHEQNMAKMRLLTLMSLAEESNEISYDTLAKELQINEDEVELFVIDAIRAKLVEGKIDQ 330 (378)
T ss_pred HHHHHH---HhChHHHHHhcccHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhHHh
Confidence 444443 333333322232 122223333334444557889999999999999999999999999999999999999
Q ss_pred CCcEEEec
Q psy7321 357 IDSIVHFE 364 (408)
Q Consensus 357 v~giV~F~ 364 (408)
.++.|+..
T Consensus 331 ~~~~viVs 338 (378)
T KOG2753|consen 331 MNRTVIVS 338 (378)
T ss_pred hcceEEee
Confidence 99987554
No 19
>KOG2688|consensus
Probab=97.64 E-value=0.00062 Score=68.90 Aligned_cols=210 Identities=18% Similarity=0.235 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChHH
Q psy7321 147 LQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD--ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK-PIIDEAE 223 (408)
Q Consensus 147 le~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~--~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t-~~i~~~e 223 (408)
+.+....-++|+..+...-++..++-.........+ -.-...|+-+.|++.+++.||.+|.....+.+.. |.---..
T Consensus 163 ~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af~~cp~~~~~n 242 (394)
T KOG2688|consen 163 LYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAFRLCPDLLLKN 242 (394)
T ss_pred HHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHHHhCcHHHHhh
Confidence 344446677788888777777765433332111111 1223556667789999999999999999999864 3110011
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchh--hh
Q psy7321 224 RITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGS--SI 301 (408)
Q Consensus 224 ~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~--~~ 301 (408)
....+.+.+-++++-...|... ++.+.- +..|.-|.+ .++.+++..|...+++|+..+..-|. +.
T Consensus 243 ~~~iliylip~~~llg~~Pt~~-lL~~~~-------~~~~~~lv~-----aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l 309 (394)
T KOG2688|consen 243 KRLILIYLIPTGLLLGRIPTKE-LLDFYT-------LDKYSPLVQ-----AVRSGNLRLFDLALADNERFFIRSGIYLTL 309 (394)
T ss_pred hhhHHHHHhHHHHHhccCcchh-hHhHhh-------HHhHHHHHH-----HHHhccHHHHHHHHhhhHHHHHHhccHHHh
Confidence 2236677888887776655543 111110 223333333 45568999999999999976544442 11
Q ss_pred H-HHHHHHHH-HHHHHhcc---ccCChHHHHHHhCCC------HHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCch
Q psy7321 302 L-ERAVTEHN-LLSASKLY---NNISFPELGALLQIS------AAKAEKIASHMICEGRMNGYVDQIDSIVHFETREIL 369 (408)
Q Consensus 302 L-~~~ViEhN-i~~isk~Y---s~Itl~~La~lLgls------~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l 369 (408)
. -+-+.=+| ++.+.+.- +++.++++-..+..+ .+++|-+++.+|.+|+|.|.|+.....++|.+.++.
T Consensus 310 ~~l~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~pf 388 (394)
T KOG2688|consen 310 EKLPLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDPF 388 (394)
T ss_pred hhhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCCC
Confidence 1 12233344 34455666 889999998888764 699999999999999999999999999988876543
No 20
>KOG2758|consensus
Probab=97.60 E-value=0.091 Score=51.90 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=48.1
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
+.-.+||++-||..|+++++++|.-+..+|.+.||.||||...|-|..+.+
T Consensus 345 RIHqcIti~mLA~kLnm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~ 395 (432)
T KOG2758|consen 345 RIHQCITIDMLADKLNMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHP 395 (432)
T ss_pred HHHHheeHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCC
Confidence 457899999999999999999999999999999999999999999988875
No 21
>KOG2072|consensus
Probab=97.23 E-value=0.059 Score=58.70 Aligned_cols=216 Identities=20% Similarity=0.168 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhccccc---cCCcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh-cC-CC
Q psy7321 147 LQTYMKIARLYLEDEDPVQAEAFINRASLLQA---ETKDETLQVHYKVCYARVLDYRRKFI---EAAQRYSELS-YK-PI 218 (408)
Q Consensus 147 le~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~---~~~~~~lk~~y~~~~a~i~~~~r~f~---eAa~~y~e~~-~t-~~ 218 (408)
++.-+.|+-...+.+-|..|-..+.-+..++. ...-+.+...||.-.+.++--.++++ .|-..|+.++ +. ++
T Consensus 232 LDtRf~QLdvAi~lELWQEAyrSiEDIhgLm~lSKrtPkp~~laNYY~KL~~VF~~sgn~LfHAaAw~k~f~l~k~~~K~ 311 (988)
T KOG2072|consen 232 LDTRFQQLDVAIELELWQEAYRSIEDIHGLMKLSKRTPKPSTLANYYEKLAKVFWKSGNPLFHAAAWLKLFKLYKNMNKN 311 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhccc
Confidence 55556677777888888888877777765442 23446777888888888877777766 3334455555 22 45
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCcchhH----------------HHHhhhcCcccCCChhHHHHHHHHHH-hhcCc--ch
Q psy7321 219 IDEAERITALKSALICTILASAGQQRSR----------------MLATLFKDERCQHLPAYSILEKMYLD-RIIRK--SE 279 (408)
Q Consensus 219 i~~~e~~~~L~~av~~~ILa~~~~~rs~----------------ll~~l~~d~~~~~lp~~~~L~k~f~~-~ii~~--~~ 279 (408)
.+.++....-..++++++=-|-++.+++ .|+.|+.= +.-|.=..|++--.. .++.. .+
T Consensus 312 ~Tqde~q~~as~VlLaaLSIP~~~~~~~~~r~~e~e~~~~ek~~rla~LL~L---~~~PTR~~ll~e~v~~gV~~~v~qe 388 (988)
T KOG2072|consen 312 LTQDELQRMASRVLLAALSIPIPDARSDSARLIEIEDIGKEKNLRLANLLGL---PAPPTRKGLLKEAVREGVLSKVDQE 388 (988)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCcccccccccccccchhhHHHHHHHHhCC---CCCccHHHHHHHHHHhccHhhhhHH
Confidence 6666655444445555544453333332 22222221 111222222222111 01100 12
Q ss_pred HHHHHHHhc-------------hhhhhhhcch-----hhhHHHHHHHHHHHHHHhccccCChHHHHHHhCC-CHHHHHHH
Q psy7321 280 LQDFAALLK-------------PHQKAITVDG-----SSILERAVTEHNLLSASKLYNNISFPELGALLQI-SAAKAEKI 340 (408)
Q Consensus 280 l~~F~~~L~-------------~h~~~~~~d~-----~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgl-s~e~~E~~ 340 (408)
++....+|. |--..+...| ..-|...++-.-+..+|+.|.+|++++|-++.-+ +.-++|+.
T Consensus 389 ~kdLY~iLEveF~PL~l~k~lq~ll~~ls~~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~~~~~lEk~ 468 (988)
T KOG2072|consen 389 VKDLYNILEVEFHPLKLCKKLQPLLDKLSESPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFFSAFELEKL 468 (988)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHH
Confidence 222222221 1111111111 1356666777778889999999999999998775 89999999
Q ss_pred HHHHHhcCceEEEeccCCcEEEecC
Q psy7321 341 ASHMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 341 ls~mI~~grl~akIDqv~giV~F~~ 365 (408)
+.+....+-+..+||...+.|.|.+
T Consensus 469 ~v~a~k~~~v~iriDH~~~~v~Fgs 493 (988)
T KOG2072|consen 469 LVEAAKHNDVSIRIDHESNSVSFGS 493 (988)
T ss_pred HHHHHhccceeEEeccccceeeecc
Confidence 9999999999999999999999984
No 22
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.04 E-value=0.027 Score=54.95 Aligned_cols=186 Identities=14% Similarity=0.179 Sum_probs=105.8
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCC-chhHHHHHHHHHHHhhhc-CChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYS-VDYKLQTYMKIARLYLED-EDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~-~~~Kle~~L~i~RL~L~~-~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
...|.+|.+. ++.+|.+.+... ++. +...+ ...-...+.++.++|-.. +|+.+|-.+..+|.......+.+..-.
T Consensus 79 ~~Aa~~~k~~-~~~~Ai~~~~~A-~~~-y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 79 EEAANCYKKG-DPDEAIECYEKA-IEI-YREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHH-HHH-HHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHhh-CHHHHHHHHHHH-HHH-HHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 3344444333 555555555442 222 22222 223355555678888888 899999999999987765545555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhh-cCcccCCChhH
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELSYKP---IIDEAERITALKSALICTILASAGQQRSRMLATLF-KDERCQHLPAY 263 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~---~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~-~d~~~~~lp~~ 263 (408)
..+.-.|.++...++|.+|...|.++.... ....-.....+-.+++|-+..+....=.+.+.+.. .||.+..-..+
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 666777888888899999999999876542 11111233344456778777654323333344433 46777666666
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchhh
Q psy7321 264 SILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSS 300 (408)
Q Consensus 264 ~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~ 300 (408)
+.+.... +.+...+.+.|...+..+.....-|+|.
T Consensus 236 ~~~~~l~--~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 236 KFLEDLL--EAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHH--HHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHH--HHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 6444433 1223367778888887776666667764
No 23
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.043 Score=55.13 Aligned_cols=237 Identities=18% Similarity=0.222 Sum_probs=137.3
Q ss_pred ccHHHHHHHHhcCcccc-c--cccCCchhHHH-HH--HHHHHHhhhcCChHHHHHHHHHhccccc--cC--CcHHHHHHH
Q psy7321 120 ENWRDAANVLVGIPLET-G--QKQYSVDYKLQ-TY--MKIARLYLEDEDPVQAEAFINRASLLQA--ET--KDETLQVHY 189 (408)
Q Consensus 120 gd~~eAa~~L~~i~~Et-~--~~~~~~~~Kle-~~--L~i~RL~L~~~D~~~A~~~i~Ka~~~~~--~~--~~~~lk~~y 189 (408)
...+++.+.+..+---+ . .-...+..|.- +| -....+|+..+.+..++.++ |+..... +. ..-.-...|
T Consensus 144 d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~l-ka~~~vs~~Di~~~~~sq~v~f 222 (413)
T COG5600 144 DNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFL-KASKEVSMPDISEYQKSQVVVF 222 (413)
T ss_pred hhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHH-Hhcccccccccchhhhcceeeh
Confidence 34666666666532111 0 11123333433 22 24667899999999998765 3332211 10 011223556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHhCC-CCcchhHHHHhhhcCcccCCChhHHHHH
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELSYK-PIIDEAERITALKSALICTILAS-AGQQRSRMLATLFKDERCQHLPAYSILE 267 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~~t-~~i~~~e~~~~L~~av~~~ILa~-~~~~rs~ll~~l~~d~~~~~lp~~~~L~ 267 (408)
.-|.|+++.+.++|-+|.-.+.++|.. |..-.-.+...+.+.+..++|.. ..|-+. +|.+ -++ ...|.-|.
T Consensus 223 ~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~~Ptk~-~L~r---~~~---~s~~~~Lv 295 (413)
T COG5600 223 HYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFPPTKD-LLER---FKR---CSVYSPLV 295 (413)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCCCCchH-HHHh---ccc---cchhHHHH
Confidence 668999999999999999999999853 32100012334455565555543 344444 4433 222 23455566
Q ss_pred HHHHHhhcCcchHHHHHHHhchhhhhhhcchh--hhHH--HHHHHHHHHH--HHhccc--cCChHH--HHHHhCC-C---
Q psy7321 268 KMYLDRIIRKSELQDFAALLKPHQKAITVDGS--SILE--RAVTEHNLLS--ASKLYN--NISFPE--LGALLQI-S--- 333 (408)
Q Consensus 268 k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~--~~L~--~~ViEhNi~~--isk~Ys--~Itl~~--La~lLgl-s--- 333 (408)
+. ++.++++.|...++.|...+-.-|. +.+. .-|.=.|+.. ..--.. ++.++- .+..+.. +
T Consensus 296 ka-----vrsGni~~~~~~l~~ner~~~~~~l~ltl~~~~~~V~~RNL~rk~w~~~~~qsrlp~sil~~~~qls~~dn~~ 370 (413)
T COG5600 296 KA-----VRSGNIEDFDLALSRNERKFAKRGLYLTLLAHYPLVCFRNLFRKIWRLHGKQSRLPLSILLIVLQLSAIDNFH 370 (413)
T ss_pred HH-----HHcCCHHHHHHHHHHhHHHHHHcchHHHHHhhccHHHHHHHHHHHHhhccccccCcHHHHHHHHHccCCCccc
Confidence 55 3558999999999988865533331 2111 1122233322 111122 322333 3333332 3
Q ss_pred -HHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCch
Q psy7321 334 -AAKAEKIASHMICEGRMNGYVDQIDSIVHFETREIL 369 (408)
Q Consensus 334 -~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l 369 (408)
.+++|-.++.||..|.|.|.|=.-...|+|.+.++.
T Consensus 371 ~~~~VEciL~tlI~~G~lrgYis~s~~~vV~sk~~pF 407 (413)
T COG5600 371 SFKEVECILVTLIGLGLLRGYISHSRRTVVFSKKDPF 407 (413)
T ss_pred ChHHHHHHHHHHHhhhhhhheecccceEEEEecCCCC
Confidence 789999999999999999999999999999876543
No 24
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=96.63 E-value=0.042 Score=56.38 Aligned_cols=282 Identities=16% Similarity=0.161 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccc----
Q psy7321 24 ADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVI---- 99 (408)
Q Consensus 24 ~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i---- 99 (408)
-+.|..|++-++++..|- ..+==+.++=++++|=|-. .+.||.+=.++..... +. +..|....++.=
T Consensus 7 w~nYc~LF~~iL~s~~p~-~l~LPn~WlwDiiDEFvYQ------fqsfc~yr~~~~~~~~-~e-~~~l~~~~~~~W~~~~ 77 (404)
T PF10255_consen 7 WDNYCELFNYILNSDGPV-NLELPNQWLWDIIDEFVYQ------FQSFCQYRSKLKKKTE-EE-IQLLKENNPDVWNVYS 77 (404)
T ss_pred HHHHHHHHHHHhCCCCCc-ccCCCcHHHHHHHHHHHHH------hhhHHHHhhhccCCCH-HH-HHHHHhhccCcccHHH
Confidence 356999999999755441 1111125666666665543 3556666444443321 11 111111111111
Q ss_pred -----hHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHH--HHHHHHHhhhcCChHHHHHHHHH
Q psy7321 100 -----SFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQT--YMKIARLYLEDEDPVQAEAFINR 172 (408)
Q Consensus 100 -----~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~--~L~i~RL~L~~~D~~~A~~~i~K 172 (408)
+=-++..++...|+..... ++..+.+.- +++-+....+-+ ++-..|++...|||..|-..+.-
T Consensus 78 VLnvL~sLv~kS~I~e~l~~~~~~-~~~~~~~~~---------~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~ 147 (404)
T PF10255_consen 78 VLNVLYSLVDKSQINEQLEAEKRG-EDPDEVAGE---------YGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLEN 147 (404)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhcc-CCchhhhcc---------cccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhc
Confidence 1113445555555544333 222222211 222222222322 34578999999999999877655
Q ss_pred hcc----ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C------CCC------hHHHHHHHHHHH
Q psy7321 173 ASL----LQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK----P------IID------EAERITALKSAL 232 (408)
Q Consensus 173 a~~----~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t----~------~i~------~~e~~~~L~~av 232 (408)
+.. ....+ +.-.+..+-+.|.-+++-|+|.+|.+.|..+... . +.+ -.|++.+ .+.
T Consensus 148 idl~~~~l~~~V--~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMya--LlA 223 (404)
T PF10255_consen 148 IDLNKKGLYTKV--PACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYA--LLA 223 (404)
T ss_pred cCcccchhhccC--cchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHH--HHH
Confidence 532 11222 3333444446677788899999999999876531 1 111 1233333 467
Q ss_pred HHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhh-hhh---------------c
Q psy7321 233 ICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQK-AIT---------------V 296 (408)
Q Consensus 233 ~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~-~~~---------------~ 296 (408)
+|..|+|.-.+.+ +....+++.. ..+.+ +..++++.|++.+..--+ ++. .
T Consensus 224 ic~~l~p~~lde~--i~~~lkeky~------ek~~k------mq~gd~~~f~elF~~acPKFIsp~~pp~~~~~~~~~~~ 289 (404)
T PF10255_consen 224 ICLSLCPQRLDES--ISSQLKEKYG------EKMEK------MQRGDEEAFEELFSFACPKFISPVSPPDYDGPSQNKNK 289 (404)
T ss_pred HHHHhCCCCCCHH--HHHHHHHHHH------HHHHH------HHccCHHHHHHHHHhhCCCccCCCCCCCcccccchhhh
Confidence 8888887421111 1111111100 00000 111344444433311000 000 0
Q ss_pred chh----hhHHHH----HHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHH
Q psy7321 297 DGS----SILERA----VTEHNLLSASKLYNNISFPELGALLQISAAKAEKIAS 342 (408)
Q Consensus 297 d~~----~~L~~~----ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls 342 (408)
|+. ..+.+. ..--+||.+-|.|++|+++-||.+++++++.+-..+.
T Consensus 290 e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKLYtti~l~KLA~fl~vd~~~lr~~Ll 343 (404)
T PF10255_consen 290 EPYRRQLKLFLDEVKQQQKLPTLRSYLKLYTTIPLEKLASFLDVDEEELRSQLL 343 (404)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCHHHHHHHcCCCHHHHHHHHH
Confidence 121 123333 3345789999999999999999999999986555443
No 25
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.55 E-value=0.022 Score=49.74 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
......+|+.+...|++++|...|..+.-.+ -++..+--..++.+++++..+++..|...+..+.. +..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-------~~~ 116 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANA----PDPELKPLARLRLARILLQQGQYDEALATLQQIPD-------EAF 116 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC-------cch
Confidence 4556779999999999999999999975322 34455667788899999999999999998866322 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSEL 213 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~ 213 (408)
...+..+.|.++...+++-+|-..|...
T Consensus 117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 117 KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 4556778899999999999999999764
No 26
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=96.15 E-value=0.042 Score=48.13 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=48.6
Q ss_pred hhcCcchHHHHHHHhchhhh-hhhcchhhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHH
Q psy7321 273 RIIRKSELQDFAALLKPHQK-AITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHM 344 (408)
Q Consensus 273 ~ii~~~~l~~F~~~L~~h~~-~~~~d~~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~m 344 (408)
+.+-.+++.+|...++.+.. .........|...|++.=+..+++.|++|+++.+++.||++++++++.+.+-
T Consensus 49 ~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~~~el~~~~~~~ 121 (143)
T PF10075_consen 49 QALWEGDYSKFWQALRSNPWSPDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLSEEELEKFIKSR 121 (143)
T ss_dssp HHHHTT-HHHHHHHS-TT----HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCCHHHHHHHHHHc
Confidence 33334778888877764411 0111123568889999999999999999999999999999988887777765
No 27
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.75 E-value=0.41 Score=46.64 Aligned_cols=192 Identities=14% Similarity=0.090 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHh-hccchh-hchHHHHHHHHHHhcCCCCcchhchHHHHHhhh-cCccc
Q psy7321 23 QADKYRSILELILKNQDTTTCTECLNLFVEAIV-NENVSL-VISRQILTDVSTHLVSQPDEVAKPVSHFTLDKV-QPRVI 99 (408)
Q Consensus 23 ~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~e~v~~-~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i-~~~~i 99 (408)
-++.|...-+.....++. .+...+|..+.- .+...- -..-+..........+.........+..+++-. ..|..
T Consensus 34 Aa~~y~~Aa~~fk~~~~~---~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDW---EKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHTT-C---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcH
Confidence 355677766666555543 345566655432 111111 011123333444444442222223334444433 34543
Q ss_pred hHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc
Q psy7321 100 SFEEQVASIRQHLALIYERE-ENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA 178 (408)
Q Consensus 100 ~~E~e~a~l~~~LA~~~e~~-gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~ 178 (408)
. +.+++...+|++|+.. |++++|.+.++.. .+.+...-....-.+.++..+.++...++|..|-....++.....
T Consensus 111 ~---~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A-~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 111 S---QAAKCLKELAEIYEEQLGDYEKAIEYYQKA-AELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp H---HHHHHHHHHHHHHCCTT--HHHHHHHHHHH-HHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred H---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 3 3689999999999999 9999999998874 344222223455688889999999999999999998888764322
Q ss_pred c--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChH
Q psy7321 179 E--TKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK-PIIDEA 222 (408)
Q Consensus 179 ~--~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t-~~i~~~ 222 (408)
+ ...+..+ .|+...+..+...+|+..|-+.|.+.-.. |.+..+
T Consensus 187 ~~~l~~~~~~-~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 187 ENNLLKYSAK-EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp CHCTTGHHHH-HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred cccccchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 1 1222222 23344455677788998888888776543 555544
No 28
>KOG2076|consensus
Probab=94.52 E-value=2 Score=47.73 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=96.1
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHY 189 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y 189 (408)
..||.+||..||.++|...-.-. -.+.++.. ++|..-.-+....+++.+|..+.+||-.. ...+|++..+
T Consensus 177 ~tL~~IyEqrGd~eK~l~~~llA------AHL~p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~e- 246 (895)
T KOG2076|consen 177 YTLGEIYEQRGDIEKALNFWLLA------AHLNPKDY-ELWKRLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYE- 246 (895)
T ss_pred HHHHHHHHHcccHHHHHHHHHHH------HhcCCCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHH-
Confidence 67999999999999997653221 13445555 99999999999999999999999999653 2346665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHH-HHHHHHHhCCCCcchhHHHHhhhcC----cccCCChhH
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELSYK-PIIDEAERITALK-SALICTILASAGQQRSRMLATLFKD----ERCQHLPAY 263 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~~t-~~i~~~e~~~~L~-~av~~~ILa~~~~~rs~ll~~l~~d----~~~~~lp~~ 263 (408)
.+-++.-.+++..|...|..++.. |.+ +-+|...+. .++-+=+- ..+|.+.++.+..- ...-.+|.+
T Consensus 247 ---rs~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~---~~~~e~a~~~le~~~s~~~~~~~~ed~ 319 (895)
T KOG2076|consen 247 ---RSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAHYFIT---HNERERAAKALEGALSKEKDEASLEDL 319 (895)
T ss_pred ---HHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHhhccccccccHH
Confidence 466677779999999999999975 321 123433332 22222222 23445555555431 122357777
Q ss_pred HHHHHHHH
Q psy7321 264 SILEKMYL 271 (408)
Q Consensus 264 ~~L~k~f~ 271 (408)
..+..+|+
T Consensus 320 ni~ael~l 327 (895)
T KOG2076|consen 320 NILAELFL 327 (895)
T ss_pred HHHHHHHH
Confidence 77777775
No 29
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=94.08 E-value=0.09 Score=40.20 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCC
Q psy7321 311 LLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQID 358 (408)
Q Consensus 311 i~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~ 358 (408)
|+.+-+--.++|+.+||..||+|++.+|.++..+|..|+|.-.-+...
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred HHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 344445667899999999999999999999999999999985554443
No 30
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=93.80 E-value=0.96 Score=33.32 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVH 188 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~ 188 (408)
...+|..+...|++.+|.+.+....-.. +... ..+.....++...+++..|..+++++..... .++ .
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~ 69 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-----PDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNA----K 69 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-----CccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cch----h
Confidence 3568889999999999999998753221 1111 6677889999999999999999888765332 222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 189 YKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 189 y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.....+.++...+++..|...|..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 344567777778888888888877654
No 31
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.33 E-value=0.49 Score=38.40 Aligned_cols=102 Identities=9% Similarity=-0.000 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
....+|..+.+.|++.+|.+.+..+.-.. -+.....+.++...++++..+++..|..+..++...... ... ..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~--~~ 76 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK-SPK--AP 76 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC-CCc--cc
Confidence 34678899999999999999998864221 112234567788999999999999999999888643221 110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
......+.++...+++.+|.+.|.++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 12335677788889999999999988765
No 32
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=92.08 E-value=0.043 Score=58.59 Aligned_cols=106 Identities=25% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
.++..+...-|+.+.++|++..|..+|..+... .++...+.+..|..+++.+..+++..|...++...... -.
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~----~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~---l~ 93 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQ----QLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQ---LP 93 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccc----cCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCccc---CC
Confidence 567888888899999999999999999998743 37788899999999999999999999999887644322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.....+|+...+.++...+++++|++.+..+..
T Consensus 94 ~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 94 PEQQARYHQLRAQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 466788999999999999999999999887654
No 33
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.02 E-value=0.53 Score=35.96 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCch--hHHHHHHHHHHHhhhcCChHHHHHHHHHhcc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVD--YKLQTYMKIARLYLEDEDPVQAEAFINRASL 175 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~ 175 (408)
.+.+-..+|.+|...|+|++|.+.+.... +. .+.+++. ..+..+..+.++|...+|+..|..+..|+-.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al-~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKAL-DI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777899999999999999999988742 22 2333333 3588888999999999999999999888753
No 34
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.87 E-value=0.93 Score=34.55 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 146 KLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD-ETLQVHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 146 Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~-~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
-...+..+..+|...++|.+|..+.+|+-......++ .......+..+|.++...++|-+|-.+|.+++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567788999999999999999999999866433333 33347778889999999999999999998876
No 35
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.75 E-value=5.8 Score=34.25 Aligned_cols=61 Identities=25% Similarity=0.264 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHh
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRA 173 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka 173 (408)
+...+.+||.++...|++++|...|..++- ...+-.+......+|+..||+..|.....++
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~--------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQIPD--------EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccC--------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 455677899999999999999999977532 2234456677899999999999999887665
No 36
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=91.72 E-value=4.2 Score=37.17 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhh-hhhhcchhhhHH
Q psy7321 225 ITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQ-KAITVDGSSILE 303 (408)
Q Consensus 225 ~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~-~~~~~d~~~~L~ 303 (408)
..+..+.+++.++....++-...+..+ .+....-|.++...+.. +.+..+++..|.+.++... .....--...+-
T Consensus 99 ~ef~~y~lL~~l~~~~~~~~~~~l~~l--~~~~~~~~~i~~al~l~--~a~~~gny~~ff~l~~~~~~~~l~~~l~~~~~ 174 (204)
T PF03399_consen 99 AEFIAYYLLYLLCQNNIPDFHMELELL--PSEILSSPYIQFALELC--RALMEGNYVRFFRLYRSKSAPYLFACLMERFF 174 (204)
T ss_dssp HHHHHHHHHHTT-T---THHHHHHTTS---HHHHTSHHHHHHHHHH--HHH--TTHHHHHHHHT-TTS-HHHHHHHGGGH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHC--chhhhcCHHHHHHHHHH--HHHHcCCHHHHHHHHhccCCChHHHHHHHHHH
Confidence 445556666655444333333333333 11233445555444332 2334478888888772111 111111123466
Q ss_pred HHHHHHHHHHHHhcccc-CChHHHHHHhCC
Q psy7321 304 RAVTEHNLLSASKLYNN-ISFPELGALLQI 332 (408)
Q Consensus 304 ~~ViEhNi~~isk~Ys~-Itl~~La~lLgl 332 (408)
..|+.+-+..+++.|.+ |+++.++++||.
T Consensus 175 ~~iR~~al~~i~~ay~~~i~l~~l~~~L~F 204 (204)
T PF03399_consen 175 NRIRLRALQSISKAYRSSIPLSFLAELLGF 204 (204)
T ss_dssp HHHHHHHHHHHHHHS-T-EEHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHcCC
Confidence 78999999999999999 999999999984
No 37
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=91.48 E-value=0.36 Score=44.49 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=36.6
Q ss_pred HHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecC
Q psy7321 314 ASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 314 isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~ 365 (408)
+.+-=+.+.|++||..||++.+++-.-|-.+..+|+|.|-||--...|+...
T Consensus 107 yIK~~Kvv~ledla~~f~l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~ 158 (188)
T PF09756_consen 107 YIKEHKVVNLEDLAAEFGLRTQDVINRIQELEAEGRLTGVIDDRGKFIYISE 158 (188)
T ss_dssp HHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE---
T ss_pred HHHHcceeeHHHHHHHcCCCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecH
Confidence 3455677999999999999999999999999999999999999666666554
No 38
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=91.01 E-value=0.23 Score=40.79 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=34.1
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEecc
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQ 356 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDq 356 (408)
=|+++.|++.|+++.+++++.+-.|+.+|.|+..||-
T Consensus 65 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 101 (102)
T PF08784_consen 65 GVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTIDD 101 (102)
T ss_dssp TEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESSST
T ss_pred cccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecccCC
Confidence 4889999999999999999999999999999999984
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.84 E-value=6.5 Score=37.52 Aligned_cols=140 Identities=20% Similarity=0.202 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
.+++..+..||-=|.+.||+..|.+-|.+. ++. ++ .-...++-.+-+|-..++.+.|.....||-.+.. ++
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekA-L~~-----DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~ 102 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKA-LEH-----DP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NN 102 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh-----Cc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--Cc
Confidence 458889999999999999999999888774 222 22 2235566677888899999999999999876543 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhCCC-CcchhHHHHhhhcCccc
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASA-GQQRSRMLATLFKDERC 257 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~~~ILa~~-~~~rs~ll~~l~~d~~~ 257 (408)
-++.+-| |-.+-.++.|-+|-+.|......|...+. -..+.++.+|++=+.. +..+..+...+..||..
T Consensus 103 GdVLNNY----G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~--s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 103 GDVLNNY----GAFLCAQGRPEEAMQQFERALADPAYGEP--SDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred cchhhhh----hHHHHhCCChHHHHHHHHHHHhCCCCCCc--chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 4555554 77777778999999999999988765432 3467788999996654 34555555667777763
No 40
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=89.75 E-value=3.6 Score=43.49 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=94.0
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHH
Q psy7321 87 SHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQA 166 (408)
Q Consensus 87 ~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A 166 (408)
..+-|..++.- =++|.+.....=++...++|+...|..+|..+++ .+++..|.+.-|..+++.+..+++..|
T Consensus 47 s~~yl~qa~qs---~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~-----~Ltd~Q~~~~~LL~ael~la~~q~~~A 118 (604)
T COG3107 47 SQFYLQQAQQS---SGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQ-----ELTDAQRAEKSLLAAELALAQKQPAAA 118 (604)
T ss_pred HHHHHHHHhhc---CchhhhhHHHHHHHHHHHcCChHHHHHHHHhccc-----cCCHHHHHHHHHHHHHHHHhccChHHH
Confidence 44445555321 1367788888888999999999999999999986 378999999999999999999999999
Q ss_pred HHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 167 EAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 167 ~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
..++.+...-.. .+--+.+|+...+.....+++-++|++......
T Consensus 119 l~~L~~~~~~~l---s~~Qq~Ry~q~~a~a~ea~~~~~~a~rari~~~ 163 (604)
T COG3107 119 LQQLAKLLPADL---SQNQQARYYQARADALEARGDSIDAARARIAQD 163 (604)
T ss_pred HHHHhhcchhhc---CHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 999988775332 223478999988988888889999999887654
No 41
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.12 E-value=1.9 Score=31.55 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=46.2
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhc
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRAS 174 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~ 174 (408)
.+|..+...|++++|.+.+..+.-. . ..-.+.+....+++...+++..|..+..++-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~------~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ------D-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC------S-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5789999999999999999986421 1 2267888899999999999999998888774
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=88.12 E-value=4.3 Score=36.10 Aligned_cols=99 Identities=22% Similarity=0.205 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.+.....+|..|...|++++|...+....- . . ......+.....++...+|+..|..+..++-.... .+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~-----~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~ 100 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE-H-----D-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGD 100 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-----C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHH
Confidence 467778899999999999999999887531 1 1 11246777889999999999999999988865322 2322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...+.++...++|.+|-..|..+...
T Consensus 101 ----~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 101 ----VLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred ----HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 2334577788889999999999998764
No 43
>KOG1840|consensus
Probab=88.01 E-value=6.1 Score=42.04 Aligned_cols=128 Identities=19% Similarity=0.166 Sum_probs=90.5
Q ss_pred hchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCc---cccccccCCchhHHHHHHHHHHHhhhc
Q psy7321 84 KPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIP---LETGQKQYSVDYKLQTYMKIARLYLED 160 (408)
Q Consensus 84 ~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~---~Et~~~~~~~~~Kle~~L~i~RL~L~~ 160 (408)
...|..+|+.+..++-.-...++.....+|.+|-..+++.+|..++++.. .++ +|.+ ...-..++...+-+|...
T Consensus 219 ~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~-~G~~-h~~va~~l~nLa~ly~~~ 296 (508)
T KOG1840|consen 219 EPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV-FGED-HPAVAATLNNLAVLYYKQ 296 (508)
T ss_pred HHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHHhcc
Confidence 34677788877443332233356666789999999999999999998742 222 4433 334677777899999999
Q ss_pred CChHHHHHHHHHhcccccc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 161 EDPVQAEAFINRASLLQAE---TKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 161 ~D~~~A~~~i~Ka~~~~~~---~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
+++..|+.++.+|-.+... ...+++... ....+-++.+.++|-+|..+|...+
T Consensus 297 GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~-l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 297 GKFAEAEEYCERALEIYEKLLGASHPEVAAQ-LSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred CChHHHHHHHHHHHHHHHHhhccChHHHHHH-HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999999998755432 345566544 3445666777888999998887654
No 44
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.91 E-value=40 Score=36.58 Aligned_cols=128 Identities=17% Similarity=0.121 Sum_probs=86.9
Q ss_pred chHHHHHhhhc-CccchHHHHHHHHHHHHHHHHH-hhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCC
Q psy7321 85 PVSHFTLDKVQ-PRVISFEEQVASIRQHLALIYE-REENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDED 162 (408)
Q Consensus 85 ~~~~~~L~~i~-~~~i~~E~e~a~l~~~LA~~~e-~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D 162 (408)
..++.+|+.+. ..+..- ++.++++.+||.++. ...++++|-..|..-..-+ .+.-=.+.|.......+|++...+-
T Consensus 38 ~~ai~CL~~~~~~~~l~p-~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~-~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSP-RQEARVRLRLASILLEETENLDLAETYLEKAILLC-ERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHhccCCCCH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHhcCH
Confidence 34677777775 666666 456899999999965 6678999999988654444 2222234466666666999998888
Q ss_pred hHHHHHHHHHhcccccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7321 163 PVQAEAFINRASLLQAE--TKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKP 217 (408)
Q Consensus 163 ~~~A~~~i~Ka~~~~~~--~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~ 217 (408)
.. |..+++++-..... ...|....+| +.+.++...+|+..|...+..+...+
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frl--l~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRL--LKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHH--HHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 77 88888886543322 2345555444 44444433489999999999888654
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=87.71 E-value=7 Score=38.99 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.......||..|...|++++|.+.+....-. .......+...+.++...+++.+|.....+...... ...+.
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 177 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE-------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRV 177 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchH
Confidence 4456678899999999999999988875321 112345677788899999999999888777654221 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
....++...+..+...+++.+|-..|.++...
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 23345555677777788899999998887753
No 46
>KOG2300|consensus
Probab=87.70 E-value=37 Score=35.95 Aligned_cols=134 Identities=19% Similarity=0.077 Sum_probs=89.6
Q ss_pred HHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHhcCccccccccCCc--hhH
Q psy7321 70 DVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYERE-ENWRDAANVLVGIPLETGQKQYSV--DYK 146 (408)
Q Consensus 70 ~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~-gd~~eAa~~L~~i~~Et~~~~~~~--~~K 146 (408)
.+.+++++..+ ....+|+.||+.+-+-.|++++| ++.+.+|+.+...- .+++-|-.-|+.--.-. ++++. +-|
T Consensus 12 GlAe~~rt~~P-PkIkk~IkClqA~~~~~is~~ve-art~LqLg~lL~~yT~N~elAksHLekA~~i~--~~ip~fydvK 87 (629)
T KOG2300|consen 12 GLAEHFRTSGP-PKIKKCIKCLQAIFQFQISFLVE-ARTHLQLGALLLRYTKNVELAKSHLEKAWLIS--KSIPSFYDVK 87 (629)
T ss_pred HHHHHHhhcCC-hhHHHHHHHHHHHhccCChHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--cccccHHhhh
Confidence 35566665432 33567999999999889998876 66778888875532 34444444333311111 12222 458
Q ss_pred HHHHHHHHHHhhhcC-ChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 147 LQTYMKIARLYLEDE-DPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQR 209 (408)
Q Consensus 147 le~~L~i~RL~L~~~-D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~ 209 (408)
.+.+-..+.+|+..+ .++.++..+.|+-..-....-|-.+ +-...|.++..++||-.|+..
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsck--llfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCK--LLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHH--HHHHHHHHHhhhccchhHHHH
Confidence 888888999998777 8999999999886544333345444 444678888889999999887
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=87.27 E-value=6.5 Score=39.21 Aligned_cols=101 Identities=10% Similarity=0.049 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....++.++...|++++|...+..+.- . ...+...+...+...+++|...+++..|..+..++.... ..+
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~-~--~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~--~~~---- 140 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLS-R--PDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG--DFA---- 140 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhc-C--CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC--cch----
Confidence 3456789999999999999999887642 2 223344566788899999999999999999998886431 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
...+...+.++...++|-+|-..|..+...
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 223445678888899999999999888754
No 48
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.69 E-value=1.6 Score=32.24 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcC-ChHHHHHHHHHh
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDE-DPVQAEAFINRA 173 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~-D~~~A~~~i~Ka 173 (408)
+..-..+|..+...|++++|...+...- + +++. -..++......|...+ ++.+|.....++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai-~-----~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAI-E-----LDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHH-H-----HSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-H-----cCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3344555666666666666666655421 1 1111 2445555666666665 466665555554
No 49
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=85.97 E-value=3.4 Score=32.07 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=57.3
Q ss_pred hccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHH
Q psy7321 119 EENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLD 198 (408)
Q Consensus 119 ~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~ 198 (408)
.|+|++|...+..+.-.. +....-.+++..++.|+..++|.+|-.++.+.. . ...+ ....| ..|+.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-----~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~--~-~~~~--~~~~~--l~a~~~~ 69 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-----PTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK--L-DPSN--PDIHY--LLARCLL 69 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-----CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT--H-HHCH--HHHHH--HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC--C-CCCC--HHHHH--HHHHHHH
Confidence 689999999988875332 112256688889999999999999999998821 1 1122 22333 4588888
Q ss_pred HHHHHHHHHHHHHH
Q psy7321 199 YRRKFIEAAQRYSE 212 (408)
Q Consensus 199 ~~r~f~eAa~~y~e 212 (408)
..++|-+|-..|.+
T Consensus 70 ~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 70 KLGKYEEAIKALEK 83 (84)
T ss_dssp HTT-HHHHHHHHHH
T ss_pred HhCCHHHHHHHHhc
Confidence 88999999888764
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=85.93 E-value=6.8 Score=34.81 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVH 188 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~ 188 (408)
...++.++...|++++|.+.+....- . .........+......+...+++..|..++.++..... .+.+
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---- 170 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIE-D----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPE---- 170 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh-c----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChH----
Confidence 34455666666666666666555321 0 00111223344455556666666666666555543211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 189 YKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 189 y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.+...+.++...++|.+|...|.+..
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12234555555555655555555444
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=85.60 E-value=5.6 Score=35.37 Aligned_cols=68 Identities=9% Similarity=0.035 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
.+.....+|..+...|++++|...+....-.. -+.......+.....++...+++..|..++.++-..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56677889999999999999999988753111 112235678889999999999999999998888653
No 52
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=85.58 E-value=3.2 Score=30.20 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHHHHHHHhcccc--CChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 308 EHNLLSASKLYNN--ISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 308 EhNi~~isk~Ys~--Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
+..++.+-..+.. ++..+||+.+|+++..+-..+.+|+..|-+.-.-|..++
T Consensus 7 q~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 7 QFRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp HHHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 4455555555555 999999999999999999999999999999877766553
No 53
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=85.29 E-value=13 Score=32.73 Aligned_cols=103 Identities=7% Similarity=-0.135 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccC-CcH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAET-KDE 183 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~-~~~ 183 (408)
.+.....++..+...|++++|...+....-.. .+.......+..+..++...+++..|..+..++-...... ..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 56667888999999999999999988753211 1122345678889999999999999999998886542211 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYS 211 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~ 211 (408)
-.....+...++.+...++|.+|-..|.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 2223333334444445555554444433
No 54
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=85.14 E-value=2.6 Score=30.96 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=41.0
Q ss_pred HhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 117 EREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 117 e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
.+.|++++|.+.+..+.-.. + .-.++++..+++|+..|++.+|...+.++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-----p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-----P--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-----T--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46799999999999864221 1 14577778899999999999999999888764
No 55
>KOG1585|consensus
Probab=84.87 E-value=19 Score=34.91 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Q psy7321 147 LQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERIT 226 (408)
Q Consensus 147 le~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e~~~ 226 (408)
.+++=.-.|++...+-+..|...+.|-.....+...-.-.-+-++..+.++.+..||..|=++|.+.+..|.+..++-..
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r 229 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR 229 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH
Confidence 44444566666666666666655544432221111101112223344555667889999999999998887665544333
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHhhhcCccc
Q psy7321 227 ALKSALICTILASAGQQRSRMLATLFKDERC 257 (408)
Q Consensus 227 ~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~ 257 (408)
++.. +|..+..+-.+..+++.+.|-+
T Consensus 230 ~len-----LL~ayd~gD~E~~~kvl~sp~~ 255 (308)
T KOG1585|consen 230 SLEN-----LLTAYDEGDIEEIKKVLSSPTV 255 (308)
T ss_pred HHHH-----HHHHhccCCHHHHHHHHcChHh
Confidence 3333 4444444444455556655543
No 56
>KOG3081|consensus
Probab=84.85 E-value=28 Score=34.01 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=57.3
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHY 189 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y 189 (408)
..=|.+|...|++++|.+.+.. . +-+|.....+.+.+..+-++-|+.-+.+....- +...-...
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~--~----------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id----ed~tLtQL 175 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHL--G----------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID----EDATLTQL 175 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhc--c----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----hHHHHHHH
Confidence 3446889999999999999765 2 235666667777777777777777776665421 11222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
-.....+.....++.+|.-.|.|.+.
T Consensus 176 A~awv~la~ggek~qdAfyifeE~s~ 201 (299)
T KOG3081|consen 176 AQAWVKLATGGEKIQDAFYIFEELSE 201 (299)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhc
Confidence 23333444445567777777777776
No 57
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=84.31 E-value=2.6 Score=33.25 Aligned_cols=41 Identities=7% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 312 LSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 312 ~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
+.+-..+-+.+..+||..|+.|++-+|.++.+++.-|++.-
T Consensus 8 Rd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkver 48 (78)
T PRK15431 8 RDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVR 48 (78)
T ss_pred HHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 33445678999999999999999999999999999999864
No 58
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=84.24 E-value=4.9 Score=31.15 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHh
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRA 173 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka 173 (408)
...-..||..|...|++.+|..++.... . +++. .+.....+|.+++.++|..|...+.|+
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~~~--~-----~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQKLK--L-----DPSN-PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHCHT--H-----HHCH-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhC--C-----CCCC-HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 3345668999999999999999998822 2 2222 344445599999999999999888764
No 59
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=84.16 E-value=6.5 Score=30.87 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=42.1
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhHH
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWD 373 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W~ 373 (408)
++.++||+.+|+|+..+++++.++...|-+..+=-+..|+.-..+++...-||
T Consensus 26 ~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~~~Itl~d 78 (83)
T PF02082_consen 26 VSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLARPPEEITLLD 78 (83)
T ss_dssp BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-CCGSBHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeecCCHHHCCHHH
Confidence 99999999999999999999999999999877655556666666666665554
No 60
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=83.94 E-value=13 Score=31.01 Aligned_cols=97 Identities=12% Similarity=-0.021 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|..+...|++.+|...++.+. +. .+ .-.+++......++..+++..|..++.++.... ..+++.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~-----~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~- 87 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLA-AY-----DP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRP- 87 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH-Hh-----CC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHH-
Confidence 445778999999999999999988752 11 11 124777788999999999999999998876532 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+...|.++...++|.+|...|..+...
T Consensus 88 ---~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 88 ---YFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234677888889999999999888764
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=83.83 E-value=13 Score=34.45 Aligned_cols=109 Identities=17% Similarity=0.079 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc
Q psy7321 100 SFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE 179 (408)
Q Consensus 100 ~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~ 179 (408)
++.++.......++..+...|++++|...+..+.-.- -+.....+.++.....+...+++..|.....++-....+
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 4556777888999999999999999999998863211 111234467788899999999999999999888653322
Q ss_pred CCcHHHH-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcC
Q psy7321 180 TKDETLQ-VHYKVCYARVLDYR--------RKFIEAAQRYSELSYK 216 (408)
Q Consensus 180 ~~~~~lk-~~y~~~~a~i~~~~--------r~f~eAa~~y~e~~~t 216 (408)
++... ..| ..+..+... +++-+|-..|..+...
T Consensus 103 --~~~~~~a~~--~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 103 --HPDADYAYY--LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred --CCchHHHHH--HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 22211 122 223333322 6788888888877654
No 62
>KOG2003|consensus
Probab=83.31 E-value=25 Score=36.78 Aligned_cols=162 Identities=16% Similarity=0.224 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcch-hchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHH
Q psy7321 46 CLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVA-KPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRD 124 (408)
Q Consensus 46 ~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~-~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~e 124 (408)
.|..-++.++.=+-.++-+-+++-.+...-..+.+..+ .+.+..+... .|. .-.+--.||++|-++||.+.
T Consensus 539 ~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~-------dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPN-------DPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCC-------CHHHHHHHHHHhhcccchhh
Confidence 34444555555555566666666666655555554433 1222222221 222 23344689999999999999
Q ss_pred HHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 125 AANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFI 204 (408)
Q Consensus 125 Aa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~ 204 (408)
|.++.-+ + ++-.+- -+|.+-=..-.|++..=|.+|-.|..|++..+.....|.+. .+.-+--.++|.
T Consensus 611 afq~~yd----s-yryfp~--nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm------iasc~rrsgnyq 677 (840)
T KOG2003|consen 611 AFQCHYD----S-YRYFPC--NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM------IASCFRRSGNYQ 677 (840)
T ss_pred hhhhhhh----c-ccccCc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH------HHHHHHhcccHH
Confidence 9887443 4 332222 34555556778999999999999999999877554556553 233333468999
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHH
Q psy7321 205 EAAQRYSELSYKPIIDEAERITALKSAL 232 (408)
Q Consensus 205 eAa~~y~e~~~t~~i~~~e~~~~L~~av 232 (408)
.|...|.++-.. ++++ ..||+..|
T Consensus 678 ka~d~yk~~hrk--fped--ldclkflv 701 (840)
T KOG2003|consen 678 KAFDLYKDIHRK--FPED--LDCLKFLV 701 (840)
T ss_pred HHHHHHHHHHHh--Cccc--hHHHHHHH
Confidence 999999988654 2332 45665433
No 63
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=83.28 E-value=4.8 Score=27.94 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=29.1
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
=..+|..+||+.+|+|...+-..+.+|+..|-|.
T Consensus 15 ~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 15 NPRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp CTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 4569999999999999999999999999999763
No 64
>KOG2003|consensus
Probab=81.18 E-value=9.9 Score=39.66 Aligned_cols=88 Identities=20% Similarity=0.151 Sum_probs=66.0
Q ss_pred HHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHH
Q psy7321 116 YEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYAR 195 (408)
Q Consensus 116 ~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~ 195 (408)
+++.|+.++|++++..++--. ..-+++...++-+|=...|..+|-..+-.++.++. +||.+.-+ .+.
T Consensus 534 ~e~~~~ldeald~f~klh~il-------~nn~evl~qianiye~led~aqaie~~~q~~slip--~dp~ilsk----l~d 600 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAIL-------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP--NDPAILSK----LAD 600 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--CCHHHHHH----HHH
Confidence 666666666666665554211 22467788889999999999999888888877664 46666444 588
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q psy7321 196 VLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 196 i~~~~r~f~eAa~~y~e~~~t 216 (408)
+|+.+++=..|.+|||+.+.-
T Consensus 601 lydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred Hhhcccchhhhhhhhhhcccc
Confidence 899999999999999999865
No 65
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=81.14 E-value=58 Score=31.96 Aligned_cols=127 Identities=20% Similarity=0.196 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
+....|.++..+|++++|.+.|.+. .-+|.....+.+||..+.++.|+..+++....- .| .+-.
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD-~~l~ 167 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG------------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---ED-SILT 167 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CC-HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---Cc-HHHH
Confidence 4556678899999999998776541 236888889999999999999999888776531 23 3333
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCcchhHHH-HhhhcCcc
Q psy7321 188 HYKVCYARVLDYR--RKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRML-ATLFKDER 256 (408)
Q Consensus 188 ~y~~~~a~i~~~~--r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll-~~l~~d~~ 256 (408)
. ...+-+..+. .+|.+|...|.|+.++.. ++ ...+....+|.+....-++=..+| ..+-+||.
T Consensus 168 q--La~awv~l~~g~e~~~~A~y~f~El~~~~~--~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 168 Q--LAEAWVNLATGGEKYQDAFYIFEELSDKFG--ST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp H--HHHHHHHHHHTTTCCCHHHHHHHHHHCCS----S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred H--HHHHHHHHHhCchhHHHHHHHHHHHHhccC--CC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 3 3455555554 469999999999887632 11 233444455555555434333333 33445554
No 66
>KOG1840|consensus
Probab=80.89 E-value=11 Score=40.08 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCcccccccc--CCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc--c
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQ--YSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA--E 179 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~--~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~--~ 179 (408)
.++..-..||..|.+.|++.+|...+... ++-..+. .+..+-...+...+-++--.+++..|..+..++..... .
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~A-l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERA-LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHH-HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 46778899999999999999988776553 2221221 22334455566777788888999999999888864433 2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 180 TKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 180 ~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+.+.-.-..+|.-+|+.+...|+|.+|-..|.++..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 233324567788889999999999999999988764
No 67
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=79.89 E-value=6.2 Score=38.83 Aligned_cols=197 Identities=17% Similarity=0.093 Sum_probs=112.5
Q ss_pred HHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcch--h-----------chHHHHHhh
Q psy7321 27 YRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVA--K-----------PVSHFTLDK 93 (408)
Q Consensus 27 y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~--~-----------~~~~~~L~~ 93 (408)
|...+.++...++| ....++.+.+.+-+.. .+-.++..+-+.+.+-.+... . ....++|+.
T Consensus 51 ~~~vl~ei~~~~~~--~l~av~~la~y~~~~~----~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~ 124 (290)
T PF04733_consen 51 YDSVLSEIKKSSSP--ELQAVRLLAEYLSSPS----DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKL 124 (290)
T ss_dssp HHHHHHHS-TTSSC--CCHHHHHHHHHHCTST----THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCC
T ss_pred hhHHHHHhccCCCh--hHHHHHHHHHHHhCcc----chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455666555544 3567777776665422 123367777676654322111 0 112223333
Q ss_pred hcCccchHHHHHHHHHHH--HHHHHHhhccHHHHHHHHhcCccccccccCCch-hHHHHHHHHHHHhhhcCChHHHHHHH
Q psy7321 94 VQPRVISFEEQVASIRQH--LALIYEREENWRDAANVLVGIPLETGQKQYSVD-YKLQTYMKIARLYLEDEDPVQAEAFI 170 (408)
Q Consensus 94 i~~~~i~~E~e~a~l~~~--LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~-~Kle~~L~i~RL~L~~~D~~~A~~~i 170 (408)
+..+ -.+.-. ...+|.+.|.++.|.+.+..++ ..+++ -...+..-.+.++...+.+..|--+.
T Consensus 125 l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~------~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 125 LHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQ------QIDEDSILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp CTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH------CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH------hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3222 235433 4588999999999999998863 23333 33333333455555556788887777
Q ss_pred HHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhCCCC-cchhHHHH
Q psy7321 171 NRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAG-QQRSRMLA 249 (408)
Q Consensus 171 ~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~~~ILa~~~-~~rs~ll~ 249 (408)
...+... +..+.+ ...++..++..++|-+|-..+.++....+ .. -.+|-+.++|..+.+.+ ..-.+.+.
T Consensus 191 ~El~~~~--~~t~~~----lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~---~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 191 EELSDKF--GSTPKL----LNGLAVCHLQLGHYEEAEELLEEALEKDP-ND---PDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp HHHHCCS----SHHH----HHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CH---HHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHhcc--CCCHHH----HHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CC---HHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 7766543 234444 34678889999999999999999876432 11 34677778887776654 44556777
Q ss_pred hhhc
Q psy7321 250 TLFK 253 (408)
Q Consensus 250 ~l~~ 253 (408)
.+..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7664
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=79.87 E-value=72 Score=32.21 Aligned_cols=101 Identities=18% Similarity=0.164 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....|..+|....+|++|.++=..+..-+ +.--.-+...+|-+.+.-++..+|..+|...+.||-....++-
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv----- 214 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV----- 214 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce-----
Confidence 346788999999999999988866543322 2222345788999999999999999999999999865322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+=-...|++...+++|-.|-..|..+..
T Consensus 215 -RAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 215 -RASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred -ehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 1122468999999999999999988764
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=79.81 E-value=9.7 Score=37.46 Aligned_cols=100 Identities=14% Similarity=-0.032 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|.++...|++++|...+...-- - .++. ...+.....++.+.|++..|..++.++...... ++...
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~-~-----~p~~-~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~ 185 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALE-L-----NPDD-AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLR 185 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-----CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--Ccchh
Confidence 3445788899999999999999887421 1 1111 455667789999999999999999888654322 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
...+...++++...+++-+|-..|.+...
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 55566789999999999999999988753
No 70
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=79.78 E-value=6.5 Score=29.85 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=30.4
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
++..+||+.||++...+.+.+.+|...|.+..
T Consensus 23 ~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~ 54 (68)
T smart00550 23 STALQLAKNLGLPKKEVNRVLYSLEKKGKVCK 54 (68)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999998755
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=79.77 E-value=38 Score=34.06 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=57.7
Q ss_pred cCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHh
Q psy7321 95 QPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRA 173 (408)
Q Consensus 95 ~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka 173 (408)
+..+-.||.+ ..|+++|-+.|+.+.|.++=|.+. ++ ..++..+|+-...+..|-|+..|=+++|+...+--
T Consensus 63 ~~d~~t~e~~-----ltLGnLfRsRGEvDRAIRiHQ~L~-~s--pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L 133 (389)
T COG2956 63 QEDPETFEAH-----LTLGNLFRSRGEVDRAIRIHQTLL-ES--PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQL 133 (389)
T ss_pred hcCchhhHHH-----HHHHHHHHhcchHHHHHHHHHHHh-cC--CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3555566644 459999999999999999998864 33 35778899999999999999999999999886544
No 72
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=79.63 E-value=5.5 Score=28.75 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=42.0
Q ss_pred HHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 308 EHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 308 EhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
|..++.+..-+..++..+||+.+|++...+=..+.+|+..|-|.-..|.-|+
T Consensus 5 q~~iL~~l~~~~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~~~~D~ 56 (59)
T PF01047_consen 5 QFRILRILYENGGITQSELAEKLGISRSTVTRIIKRLEKKGLIERERDPDDR 56 (59)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTET
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 3344444445677999999999999999999999999999999888877654
No 73
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=79.03 E-value=6.6 Score=28.70 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=37.8
Q ss_pred HHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 314 ASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 314 isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
+-+--..+++++||+.||+|+.-+-..+..+-..|. |.++-|-+.+.
T Consensus 8 ~l~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~----i~r~~GG~~~~ 54 (57)
T PF08220_consen 8 LLKEKGKVSVKELAEEFGVSEMTIRRDLNKLEKQGL----IKRTHGGAVLN 54 (57)
T ss_pred HHHHcCCEEHHHHHHHHCcCHHHHHHHHHHHHHCCC----EEEEcCEEEeC
Confidence 334568899999999999999999999999999997 44555554443
No 74
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=78.72 E-value=12 Score=27.35 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=37.5
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
++.+++++.+|++...+-..+..|...|-+...-+...+...+.
T Consensus 21 ~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~ 64 (78)
T cd00090 21 LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLT 64 (78)
T ss_pred cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeC
Confidence 99999999999999999999999999999988766644444444
No 75
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=78.64 E-value=16 Score=37.65 Aligned_cols=124 Identities=15% Similarity=0.015 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCch
Q psy7321 65 RQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVD 144 (408)
Q Consensus 65 r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~ 144 (408)
-.++..++.++...+. -..+++.++.+....-. . -..||+++-..++-.+|.++|.+.-.+. ..+
T Consensus 169 NyLv~~Ll~~l~~t~~---~~~ai~lle~L~~~~pe----v---~~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d-- 233 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQR---YDEAIELLEKLRERDPE----V---AVLLARVYLLMNEEVEAIRLLNEALKEN---PQD-- 233 (395)
T ss_pred hHHHHHHHHHHhhccc---HHHHHHHHHHHHhcCCc----H---HHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCC--
Confidence 4477777777754432 23455555555433321 1 2337777777778888888887754322 111
Q ss_pred hHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 145 YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYS 211 (408)
Q Consensus 145 ~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~ 211 (408)
.++...|++.++..+++..|.....++...... + .......+.+|...++|.+|-....
T Consensus 234 --~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~----~--f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 234 --SELLNLQAEFLLSKKKYELALEIAKKAVELSPS----E--FETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch----h--HHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 677778888888888888888888887654321 1 1222346777777788877764443
No 76
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=77.27 E-value=10 Score=27.76 Aligned_cols=64 Identities=11% Similarity=0.188 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy7321 146 KLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRR-KFIEAAQRYSELSY 215 (408)
Q Consensus 146 Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r-~f~eAa~~y~e~~~ 215 (408)
..+.|......++..+|+..|..+..++-... ..++. .+..+|..+...+ +|.+|-..|..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~----~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAE----AYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHH----HHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHH----HHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45788999999999999999999999997642 23433 3445788888877 89999999887653
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=76.99 E-value=25 Score=34.35 Aligned_cols=101 Identities=12% Similarity=0.021 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
++++..-..+|.+|...|++.+|...+....- ..++ -.+.+.....++...+++..|.....++-.... ++
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~~ 131 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALA------LRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP--TY 131 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------cCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC
Confidence 45677788899999999999999887766321 1221 257888899999999999999999988875322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.. .+...|.++...++|.+|...|......
T Consensus 132 ~~----a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 132 NY----AYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 22 1223566667778999999999887753
No 78
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=76.79 E-value=7.9 Score=31.05 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
......+|.++.+.|++.+|.+.+..+.-.. -+.....+.+....+++...+++..|..+++++...
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKY----PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHC----CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4456779999999999999999999864221 111234567788889999999999999999888654
No 79
>KOG2076|consensus
Probab=76.62 E-value=8.5 Score=42.99 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=76.9
Q ss_pred HhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHH
Q psy7321 91 LDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFI 170 (408)
Q Consensus 91 L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i 170 (408)
|.........-..++..+-..+|+.|-..|.+.+|.+.|..|.-. +.-.-..+|..++|+|.+.+.+..|..+.
T Consensus 399 ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y 472 (895)
T KOG2076|consen 399 LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR------EGYQNAFVWYKLARCYMELGEYEEAIEFY 472 (895)
T ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC------ccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 333333334446778899999999999999999999999887421 22223789999999999999999999999
Q ss_pred HHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 171 NRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 171 ~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.|+-..... +-+.+.+ .+-++...+++-+|-.....++
T Consensus 473 ~kvl~~~p~--~~D~Ri~----Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 473 EKVLILAPD--NLDARIT----LASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhcCCC--chhhhhh----HHHHHHhcCCHHHHHHHHhccc
Confidence 999765432 2333333 3444444555555544444443
No 80
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=76.00 E-value=5.8 Score=27.00 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=30.0
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
.++..+||+.+|+|...+-+.+.+|...|-+.
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999986
No 81
>KOG3785|consensus
Probab=75.05 E-value=47 Score=33.92 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc------
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ------ 177 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~------ 177 (408)
|-..+...+|..+..-||+++|+..+..+.-+ -+...++.+.| +=.++..+.|..|+....|+....
T Consensus 55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-----~~~~~el~vnL--Acc~FyLg~Y~eA~~~~~ka~k~pL~~RLl 127 (557)
T KOG3785|consen 55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-----DDAPAELGVNL--ACCKFYLGQYIEAKSIAEKAPKTPLCIRLL 127 (557)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-----CCCCcccchhH--HHHHHHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 33678889999999999999999999887532 12333455544 444555578999999988875321
Q ss_pred ----ccCCcHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 178 ----AETKDETLQVHYKV----------CYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 178 ----~~~~~~~lk~~y~~----------~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+.-+|++.-+.|.. +.|.++-.+--|.||-.-|-.+..
T Consensus 128 fhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 128 FHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23345544444443 345666666677777777776664
No 82
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=74.48 E-value=3.4 Score=26.99 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=19.1
Q ss_pred HHHHHHHHhhccHHHHHHHHhc
Q psy7321 110 QHLALIYEREENWRDAANVLVG 131 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~ 131 (408)
..||.+|.+.|+|++|.+.++.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4689999999999999999886
No 83
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=74.46 E-value=7.2 Score=29.57 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=35.7
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCC
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETRE 367 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~ 367 (408)
-.+|-+.||..+|+|.+.+-+.+.+|..+|-|. -..|.|...+++
T Consensus 27 ~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~----~~~~~i~I~d~~ 71 (76)
T PF13545_consen 27 LPLTQEEIADMLGVSRETVSRILKRLKDEGIIE----VKRGKIIILDPE 71 (76)
T ss_dssp EESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESSHH
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE----EcCCEEEECCHH
Confidence 457899999999999999999999999999876 234455544433
No 84
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=74.07 E-value=44 Score=36.40 Aligned_cols=101 Identities=15% Similarity=0.012 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
...+.+...++..+...|++++|.+.+..+.-.. + .-.+.++..+++++..+++..|...+.++.... ..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~ 192 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAID------P-RSLYAKLGLAQLALAENRFDEARALIDEVLTAD--PGN 192 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------C-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 3456667778888888889999888887753111 1 123567778888888888888888887774321 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
. ..+...+.++...++|.+|...|..+...
T Consensus 193 ~----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 193 V----DALLLKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred h----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 2 22334567777778888888888777653
No 85
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=73.43 E-value=6.6 Score=28.82 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=31.3
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
..++..+||+.+|+|...+.+.+.+|...|-|..
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4589999999999999999999999999998864
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=73.30 E-value=59 Score=29.82 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHH-hhhcCC--hHHHHHHHHHhccccccCCcH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARL-YLEDED--PVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL-~L~~~D--~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
..-..||.+|...|++++|...+...-. ..+ ...+++...+.. +...++ +..|...++++-.... ++.
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~------l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP--~~~ 144 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQ------LRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA--NEV 144 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC--CCh
Confidence 3557789999999999999999886421 222 256777777774 566666 5899999999876432 232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+ .+...|..+...++|-+|-.+|..+...
T Consensus 145 ~----al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 145 T----ALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred h----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2 2345688888899999999999998765
No 87
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=73.14 E-value=10 Score=32.49 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=60.4
Q ss_pred hhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHH
Q psy7321 92 DKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFIN 171 (408)
Q Consensus 92 ~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~ 171 (408)
.|+.+.+-.++.....+...++..+...|++++|...+..+-- . -+ .-=+.+...||.|...|+...|.....
T Consensus 48 ~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~-~----dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 48 EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA-L----DP--YDEEAYRLLMRALAAQGRRAEALRVYE 120 (146)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-H----ST--T-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-c----CC--CCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4666666778888889999999999999999999999887532 1 11 123577788999999999999999988
Q ss_pred Hhcccc
Q psy7321 172 RASLLQ 177 (408)
Q Consensus 172 Ka~~~~ 177 (408)
+.....
T Consensus 121 ~~~~~l 126 (146)
T PF03704_consen 121 RYRRRL 126 (146)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886544
No 88
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.59 E-value=1.1e+02 Score=30.49 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
..+...||+.|...|+.++|..+|..+|.+. . ++.... .-.++.+.....+.........+... +.+|.+.
T Consensus 168 ~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~---~~~~~~--l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~a 238 (304)
T COG3118 168 SEAKLLLAECLLAAGDVEAAQAILAALPLQA-Q---DKAAHG--LQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEA 238 (304)
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHhCcccc-h---hhHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHH
Confidence 4556778999999999999999999988765 1 111111 11234444444454444444444432 2234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CChH-HHHHHHHHHHHHHHhCCCCcc
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYKPI-IDEA-ERITALKSALICTILASAGQQ 243 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~-i~~~-e~~~~L~~av~~~ILa~~~~~ 243 (408)
.+. .+..+...+++-+|..++..+..... ...+ -|.+.+. ++..+.|.+|-
T Consensus 239 a~~----lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle---~f~~~g~~Dp~ 291 (304)
T COG3118 239 ALA----LADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLE---LFEAFGPADPL 291 (304)
T ss_pred HHH----HHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHH---HHHhcCCCCHH
Confidence 433 57788889999999999999987532 2223 3666654 66677776663
No 89
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=72.55 E-value=16 Score=25.81 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=37.3
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEe
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F 363 (408)
-..+++.+|++.+|++...+-+.+.+|...|-+.-.-+...+...+
T Consensus 8 ~~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~ 53 (66)
T smart00418 8 EGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYSL 53 (66)
T ss_pred cCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEEE
Confidence 4678999999999999999999999999999998655444334443
No 90
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=72.03 E-value=5.3 Score=31.09 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=32.9
Q ss_pred HHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCce
Q psy7321 314 ASKLYNNISFPELGALLQISAAKAEKIASHMICEGRM 350 (408)
Q Consensus 314 isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl 350 (408)
+++++...|..+||+.+|+|+.-+...+.++...|++
T Consensus 26 L~R~~eGlS~kEIAe~LGIS~~TVk~~l~~~~~~~~~ 62 (73)
T TIGR03879 26 LAREEAGKTASEIAEELGRTEQTVRNHLKGETKAGGL 62 (73)
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHhcCcccchH
Confidence 3467899999999999999999999999988888865
No 91
>KOG1861|consensus
Probab=71.91 E-value=95 Score=32.73 Aligned_cols=169 Identities=14% Similarity=0.117 Sum_probs=84.6
Q ss_pred ccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHH
Q psy7321 120 ENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDY 199 (408)
Q Consensus 120 gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~ 199 (408)
.+|.=+.+-+..|+-+-.--.+-...=+++|=.-+|+.||.||.......-++...+...+
T Consensus 321 ~~Y~y~CdQ~KSiRQDLTVQ~IrneFTveVYEtHARIALEkGD~~EfNQCQtQLk~LY~eg------------------- 381 (540)
T KOG1861|consen 321 ANYAYLCDQFKSIRQDLTVQRIRNEFTVEVYETHARIALEKGDLEEFNQCQTQLKALYSEG------------------- 381 (540)
T ss_pred ccHHHHHHHHHHHhhhhhhheeccceeeeeehhhhHHHHhcCCHHHHHHHHHHHHHHHccC-------------------
Confidence 4666666665555443311123344557778888999999888765443333333222211
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHHHhhcCcch
Q psy7321 200 RRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSE 279 (408)
Q Consensus 200 ~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~~~ii~~~~ 279 (408)
+... ..+++.|-|+|-|+..-.++-..+|..+-. +.++-|.....+.. .-...-++
T Consensus 382 -------------------ipg~-~~EF~AYriLY~i~tkN~~di~sll~~lt~--E~ked~~V~hAL~v--R~A~~~GN 437 (540)
T KOG1861|consen 382 -------------------IPGA-YLEFTAYRILYYIFTKNYPDILSLLRDLTE--EDKEDEAVAHALEV--RSAVTLGN 437 (540)
T ss_pred -------------------CCCc-hhhHHHHHHHHHHHhcCchHHHHHHHhccH--hhccCHHHHHHHHH--HHHHHhcc
Confidence 1111 344445555555555444433333333322 22223333321111 01112255
Q ss_pred HHHHHHHhc-hhhhhhhcchhhhHHHHHHHHHHHHHHhccc-cCChHHHHHHhCCC
Q psy7321 280 LQDFAALLK-PHQKAITVDGSSILERAVTEHNLLSASKLYN-NISFPELGALLQIS 333 (408)
Q Consensus 280 l~~F~~~L~-~h~~~~~~d~~~~L~~~ViEhNi~~isk~Ys-~Itl~~La~lLgls 333 (408)
+..|..... .|-.. .--...+..+-+..-+.++.|.|. +|+++-|++.|.+.
T Consensus 438 Y~kFFrLY~~AP~M~--~yLmdlF~erER~~Al~ii~KsyrP~i~~~fi~~~laf~ 491 (540)
T KOG1861|consen 438 YHKFFRLYLTAPNMS--GYLMDLFLERERKKALTIICKSYRPTITVDFIASELAFD 491 (540)
T ss_pred HHHHHHHHhhcccch--hHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHhhhhhhc
Confidence 566655432 11100 000233445556667888999999 99999999988774
No 92
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=71.69 E-value=18 Score=29.34 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=37.7
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
.-..++-.+||+++|++.+-+-+.+.+|...|-|.- ++..|.+-.+
T Consensus 44 ~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r--~~~~~~~~~n 89 (95)
T TIGR01610 44 KQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFR--QGMMGIVGVN 89 (95)
T ss_pred cCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee--ecCCceeecC
Confidence 567889999999999999999999999999999962 3334555444
No 93
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=71.36 E-value=8.2 Score=25.10 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=24.8
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCce
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRM 350 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl 350 (408)
+|-.+||..+|++++-+=+.+.++-.+|-|
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 566899999999999999999999988865
No 94
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=71.13 E-value=18 Score=26.14 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=44.4
Q ss_pred HHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 152 KIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 152 ~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
...+.++..+|+..|...+.++-.... .+.+ .....|.++...++|-+|...|.++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~----a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDP--DNPE----AWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCST--THHH----HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999988875331 2333 344579999999999999999888764
No 95
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.66 E-value=86 Score=34.06 Aligned_cols=139 Identities=17% Similarity=0.108 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhh-hcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHH
Q psy7321 122 WRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYL-EDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYR 200 (408)
Q Consensus 122 ~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L-~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~ 200 (408)
+.-|.++|+.+-- ..+++++..+.+.++.+++++ +.+++..|+.+++|+-......+-.++|..-....++++...
T Consensus 37 I~~ai~CL~~~~~---~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~ 113 (608)
T PF10345_consen 37 IATAIKCLEAVLK---QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT 113 (608)
T ss_pred HHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Confidence 4566777776532 356899999999999999999 889999999999999765544445666666555666665543
Q ss_pred HHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHhCCCCc-chhHHHHhhhcCcccCCChhHH
Q psy7321 201 RKFIEAAQRYSELSY-KPIIDEAERITALKSALICTILASAGQ-QRSRMLATLFKDERCQHLPAYS 264 (408)
Q Consensus 201 r~f~eAa~~y~e~~~-t~~i~~~e~~~~L~~av~~~ILa~~~~-~rs~ll~~l~~d~~~~~lp~~~ 264 (408)
+... |-+.-.+... ........|..++..+=+...+...++ .--+.+..+...++-+.-|...
T Consensus 114 ~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 114 NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 3322 4444434332 222233456666655423333332222 2233444554444333444443
No 96
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=70.50 E-value=52 Score=35.52 Aligned_cols=99 Identities=21% Similarity=0.131 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.+.....++.+|...|++++|...+.... +. ++ .-...++....+++..+++..|..++.++-.. ...+++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal-~l-----~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~ 400 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSI-EL-----DP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPD 400 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc-----CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 34556778899999999999999988752 22 11 12457788899999999999999999888543 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
. +...|.++...++|-+|-.+|..+...
T Consensus 401 ~----~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 401 I----YYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred H----HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2 345688888899999999999988764
No 97
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=70.50 E-value=76 Score=32.41 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
..++...+|..+...|++++|.+.+.+..- ..++.....+.+...-..+..+|...+...+.++.... .++++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~-----~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~~~ 334 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK-----KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DDKPK 334 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh-----hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--CCChh
Confidence 456778899999999999999999988542 22222222111111222234577888877777765422 23443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYS 211 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~ 211 (408)
..+..++|+++...++|-+|-.+|.
T Consensus 335 --~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 335 --CCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4566789999999999998888666
No 98
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=70.48 E-value=60 Score=26.85 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=42.4
Q ss_pred HHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 308 EHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 308 EhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
+..++.+-.-...++..+||+.+|++...+=..+.+|...|-|...-|..++
T Consensus 30 q~~iL~~l~~~~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~ 81 (118)
T TIGR02337 30 QWRILRILAEQGSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQ 81 (118)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCC
Confidence 3333333334568999999999999999999999999999999998877665
No 99
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=69.87 E-value=26 Score=41.07 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
..+...||.+|.+.|++++|...+..+..- ++ .-.+.++..++++...+++..|...+.++.... ..+...
T Consensus 603 ~~~~~~La~~~~~~g~~~~A~~~y~~al~~------~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~ 673 (1157)
T PRK11447 603 TRIDLTLADWAQQRGDYAAARAAYQRVLTR------EP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNT 673 (1157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHH
Confidence 345678999999999999999999986421 11 135778889999999999999999998775432 123332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
....+.++...+++-+|...|..+...
T Consensus 674 ----~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 674 ----QRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred ----HHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 334688888999999999999998763
No 100
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=69.40 E-value=14 Score=30.01 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=32.3
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
...++++.+||+.+|+|+..+-+.+.+|..+|-+.
T Consensus 14 ~~~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 14 KDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 34689999999999999999999999999999876
No 101
>KOG3250|consensus
Probab=69.10 E-value=9.6 Score=35.88 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=56.6
Q ss_pred hccccCChHHHHHHhCC-CHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC-------CchhhHHHHHHHHHHHHHHHH
Q psy7321 316 KLYNNISFPELGALLQI-SAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR-------EILPSWDKQIESLCYRIDHIM 387 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgl-s~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~-------~~l~~W~~~I~~l~~~v~~v~ 387 (408)
.+-+.|.-.-|-.++.+ +.-++|.++.+.+-.+-+.|||||-+...+.... ..++..-..+...|+--+++.
T Consensus 105 s~~k~lpy~~Ll~~l~~~nvrelEd~iieamya~IlrGkldqr~q~leV~faigRdlr~k~i~nm~~TL~~w~~~cenvL 184 (258)
T KOG3250|consen 105 SFEKCLPYLVLLRLLPSRNVRELEDLIIEAMYADILRGKLDQRNQTLEVDFAIGRDLRSKDIDNMKYTLDEWCEGCENVL 184 (258)
T ss_pred hhchhhhHHHHHhhccCCchhHHHHHHHHHHHHHHHHhhHHhhcceEeechhhcccccHhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677778887 5789999999999999999999999999766532 334444444445555555666
Q ss_pred HHHHhhCh
Q psy7321 388 EQIETVQP 395 (408)
Q Consensus 388 ~~i~~~~p 395 (408)
-.|...-|
T Consensus 185 ~~ie~qv~ 192 (258)
T KOG3250|consen 185 FGIEAQVP 192 (258)
T ss_pred HHHHhccc
Confidence 66665544
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=68.99 E-value=37 Score=31.28 Aligned_cols=106 Identities=10% Similarity=0.046 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhc--------CChHHHHHHHHHhccccc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLED--------EDPVQAEAFINRASLLQA 178 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~--------~D~~~A~~~i~Ka~~~~~ 178 (408)
.....+|..|.+.|++++|...+..+.-.. . +.....+.+......+... +++..|....+++.....
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p---~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLH-P---NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-c---CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 345778999999999999999999864222 1 1111122333444444433 788888888888754322
Q ss_pred cCC-cHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 179 ETK-DETLQVH----------YKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 179 ~~~-~~~lk~~----------y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+.. .++.... .....+.++...++|.+|-..|.++...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 211 1111111 1123455566667777777777776643
No 103
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=68.66 E-value=1.3e+02 Score=30.54 Aligned_cols=98 Identities=9% Similarity=0.012 Sum_probs=60.2
Q ss_pred HHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHH
Q psy7321 113 ALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVC 192 (408)
Q Consensus 113 A~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~ 192 (408)
|..-...|++++|...|....- .+++..+...+...++++..+|+..|...+.+...... +++.. ...
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~------~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P--~~~~a----l~l 192 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAE------LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP--RHPEV----LRL 192 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHH----HHH
Confidence 3444777888888777776521 23334445555667888888888888888777754321 22221 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChH
Q psy7321 193 YARVLDYRRKFIEAAQRYSELSYKPIIDEA 222 (408)
Q Consensus 193 ~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~ 222 (408)
.+..+...++|-+|-..+..+......+++
T Consensus 193 l~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 193 AEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 466667778888887777777655444433
No 104
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=68.39 E-value=25 Score=38.31 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
......+|..+...|++++|...+..... .++....+.+......+...+++..|...+.++-.... .+.+
T Consensus 90 ~~~~~~~a~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~- 160 (899)
T TIGR02917 90 NQVLPLLARAYLLQGKFQQVLDELPGKTL------LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP--RSLY- 160 (899)
T ss_pred hhhHHHHHHHHHHCCCHHHHHHhhccccc------CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChh-
Confidence 44556677777777777777777655321 12344567777788888888888888888887754321 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
-+...+..+...++|-+|-..+.++...
T Consensus 161 ---~~~~la~~~~~~~~~~~A~~~~~~~~~~ 188 (899)
T TIGR02917 161 ---AKLGLAQLALAENRFDEARALIDEVLTA 188 (899)
T ss_pred ---hHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2334677777778888888888877653
No 105
>PF12728 HTH_17: Helix-turn-helix domain
Probab=67.98 E-value=8.7 Score=26.95 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=33.0
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhHH
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWD 373 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W~ 373 (408)
+|.+++|+.||+|... +-+++.+|.|.+. ++.+.+.|.. +.+..|-
T Consensus 2 lt~~e~a~~l~is~~t----v~~~~~~g~i~~~--~~g~~~~~~~-~~l~~~~ 47 (51)
T PF12728_consen 2 LTVKEAAELLGISRST----VYRWIRQGKIPPF--KIGRKWRIPK-SDLDRWL 47 (51)
T ss_pred CCHHHHHHHHCcCHHH----HHHHHHcCCCCeE--EeCCEEEEeH-HHHHHHH
Confidence 4789999999999876 5577789999776 3556566654 3455553
No 106
>PRK14574 hmsH outer membrane protein; Provisional
Probab=67.90 E-value=1.2e+02 Score=34.39 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|.+|...|++.+|.+++..+.- . -+.. .++++-.+.++...+...+|...++++..... +
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~-~----dP~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-----~-- 168 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLK-K----DPTN--PDLISGMIMTQADAGRGGVVLKQATELAERDP-----T-- 168 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-h----CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-----c--
Confidence 4455678999999999999999999742 1 1222 45556669999999999999999988876422 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+.++...+.++....++.+|...|.+++..
T Consensus 169 ~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 169 VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 333334454554467777799999998875
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=67.80 E-value=30 Score=29.89 Aligned_cols=93 Identities=11% Similarity=0.017 Sum_probs=71.4
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHH
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYK 190 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~ 190 (408)
.+|..+...|++++|...+....- .++ .-.+.+.....++...+++..|.....++..... ++.+. +
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~------~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--~~~~a----~ 95 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM------AQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--SHPEP----V 95 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH------cCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHH----H
Confidence 468889999999999999887421 111 2468888899999999999999999999986432 33333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 191 VCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 191 ~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
...|..+...+++-+|...|..+..-
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34577788889999999999988753
No 108
>KOG3054|consensus
Probab=67.61 E-value=14 Score=35.26 Aligned_cols=52 Identities=12% Similarity=0.234 Sum_probs=46.6
Q ss_pred HHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecC
Q psy7321 314 ASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 314 isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~ 365 (408)
|.|--+.|.|++||..|||-.+.+-.-+-.++.+|.|.|-||--...|+...
T Consensus 208 YIk~nKvV~ledLas~f~Lrtqd~inriq~~l~eg~ltGVmDDRGKfIYIS~ 259 (299)
T KOG3054|consen 208 YIKKNKVVPLEDLASEFGLRTQDSINRIQELLAEGLLTGVMDDRGKFIYISM 259 (299)
T ss_pred HHHhcCeeeHHHHHHHhCccHHHHHHHHHHHHHhhhheeeecCCCceEEecH
Confidence 3455788999999999999999999999999999999999999999888764
No 109
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=67.53 E-value=15 Score=25.13 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=31.0
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
..++..+|++.||+++..+.+.+..|...|.|..
T Consensus 13 ~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 13 GKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 3489999999999999999999999999998764
No 110
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=67.48 E-value=10 Score=28.12 Aligned_cols=55 Identities=27% Similarity=0.273 Sum_probs=30.8
Q ss_pred HHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 155 RLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 155 RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+|+..+||..|...+.++-.... .++.. +...|.++...++|.+|...|.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~----~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPEL----WLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchh----hHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 355666666666666666654321 12222 22356666666666666666666554
No 111
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=67.27 E-value=22 Score=30.55 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=38.7
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
.++.++||+.+++|+..+++++.++...|-+...=....|+.--.++
T Consensus 25 ~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~ 71 (135)
T TIGR02010 25 PVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPA 71 (135)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCH
Confidence 59999999999999999999999999999998754555565544444
No 112
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.60 E-value=5.4 Score=27.86 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCc
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIP 133 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~ 133 (408)
+..||..|.+.||.+.|.++|.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 4679999999999999999999986
No 113
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=65.81 E-value=22 Score=41.68 Aligned_cols=91 Identities=14% Similarity=0.044 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVH 188 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~ 188 (408)
...+|..+...|++++|..+|..-|- + ...++....++...+|+..|...+.++-... ..+.+..+
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~~p~-------~----~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~- 641 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQQPP-------S----TRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARL- 641 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC-------C----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH-
Confidence 34678899999999999999884221 1 1345677899999999999999998887543 23444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 189 YKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 189 y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
..++++...++|-+|-..|..+...
T Consensus 642 ---~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 642 ---GLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred ---HHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 4688888889999999999988765
No 114
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=65.66 E-value=54 Score=27.82 Aligned_cols=100 Identities=16% Similarity=0.005 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
+...+|..+-..|+.++|...+..-. + ..++.....+.++....-+-..|++..|...+.+...... +.++..
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al-~---~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p---~~~~~~ 75 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRAL-A---AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP---DDELNA 75 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH-H---cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccH
Confidence 45678999999999999999998753 2 2245566778889999999999999999999987764322 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
......+..+...+++.+|-..+....
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333445666666788888888887765
No 115
>KOG1129|consensus
Probab=65.62 E-value=57 Score=33.02 Aligned_cols=95 Identities=20% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
-..++++.|.+-|-+.+|-+.|+.- ++...-.|.++...|.|-..+...+|-..+...-..+. .+ .
T Consensus 225 Wk~Q~gkCylrLgm~r~Aekqlqss--------L~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~----V 290 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSS--------LTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FD----V 290 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHH--------hhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--ch----h
Confidence 3567899999999999999998862 33345678899999999999999999777655443321 12 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.|..-++|++..-+++.+|.++|....+.
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKL 319 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence 55667899999999999999999998865
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=65.61 E-value=38 Score=34.21 Aligned_cols=93 Identities=11% Similarity=-0.057 Sum_probs=69.8
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHH
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYK 190 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~ 190 (408)
..|.-....|+|.+|...+....- . ++ .-...+......|+..+++..|...+.++-.+.. .+... +
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~-~-----~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a----~ 73 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID-L-----DP-NNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKA----Y 73 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-h-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHH----H
Confidence 447778889999999999887532 1 11 1246788889999999999999999999865432 23322 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 191 VCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 191 ~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
...|.++...++|-+|...|..+...
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34578888899999999999988754
No 117
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=65.52 E-value=18 Score=32.29 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=38.0
Q ss_pred HHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE---EEec
Q psy7321 311 LLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMN---GYVD 355 (408)
Q Consensus 311 i~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~---akID 355 (408)
|+.+-+--.++++.+||+.+|+|+.-+-+-+.+|..+|.|. +.+|
T Consensus 19 IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~~~~v~ 66 (164)
T PRK11169 19 ILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLN 66 (164)
T ss_pred HHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEEC
Confidence 33344557899999999999999999999999999999985 4566
No 118
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=65.21 E-value=51 Score=38.17 Aligned_cols=92 Identities=14% Similarity=0.076 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
-....|..+...||+.+|...+.... + .+++. .++++..+++|+..+++.+|..++.|+-.... .|.
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al-~-----~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~---- 112 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIH-Q-----QVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDA---- 112 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH-H-----hCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccH----
Confidence 34556778888899999999998863 2 34444 78889999999999999999999999976422 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.|+...+.+ ++|-+|+..|.++...
T Consensus 113 ~~~~~La~i----~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 113 RLERSLAAI----PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHHh----ccChhHHHHHHHHHHh
Confidence 233333544 8999999999999865
No 119
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=65.18 E-value=17 Score=25.70 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=29.7
Q ss_pred cC-ChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 320 NI-SFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 320 ~I-tl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
.+ |..+||+.+|+|..-+.+.+.+|..+|.+.
T Consensus 19 ~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~ 51 (60)
T smart00345 19 KLPSERELAAQLGVSRTTVREALSRLEAEGLVQ 51 (60)
T ss_pred cCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 46 899999999999999999999999999875
No 120
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=64.68 E-value=8.4 Score=23.68 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCc
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIP 133 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~ 133 (408)
...+|.+|.+.|++++|.+.++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4678999999999999999998864
No 121
>KOG4414|consensus
Probab=64.22 E-value=13 Score=32.98 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHH
Q psy7321 302 LERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIA 341 (408)
Q Consensus 302 L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~l 341 (408)
++.+-+..-..-+++.|++|+.+++|..+|++++++-+.+
T Consensus 114 f~D~~~kR~FaLl~qAYssI~~~D~A~FlGl~~ddAtk~i 153 (197)
T KOG4414|consen 114 FRDATRKRAFALLLQAYSSIIADDFAAFLGLPEDDATKGI 153 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3333333334446788999999999999999999887654
No 122
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.59 E-value=12 Score=23.33 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVG 131 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~ 131 (408)
++-..+|.+|...|++++|.+.+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567899999999999999998876
No 123
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=63.18 E-value=23 Score=24.72 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=25.9
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
.||...|+.++|+.+|+|...+-....+.+.
T Consensus 16 ~y~~~~t~~eIa~~lg~s~~~V~~~~~~al~ 46 (50)
T PF04545_consen 16 RYFEGLTLEEIAERLGISRSTVRRILKRALK 46 (50)
T ss_dssp HHTST-SHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 3699999999999999999998888777653
No 124
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=63.17 E-value=52 Score=25.61 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=36.2
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..++..+|++.++++...+-..+.+|...|-+...-|+.++
T Consensus 23 ~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~ 63 (101)
T smart00347 23 GPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDR 63 (101)
T ss_pred CCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCC
Confidence 46899999999999999999999999999999887775443
No 125
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=62.97 E-value=21 Score=31.37 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=34.7
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE---EEecc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMN---GYVDQ 356 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~---akIDq 356 (408)
.++++.+||+.+|+|+..+-.-+-+|..+|-|. +-+|.
T Consensus 22 ~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~~~~~~v~~ 62 (153)
T PRK11179 22 ARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTRVDVNP 62 (153)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeEEEEECH
Confidence 899999999999999999999999999999996 45663
No 126
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=62.92 E-value=24 Score=26.10 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=30.2
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
=..|+..+||+.||+++.-+=+++.+|-..|-+.
T Consensus 20 ~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 20 GGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp TSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 4779999999999999999999999999999774
No 127
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=62.84 E-value=9.4 Score=25.90 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCc
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIP 133 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~ 133 (408)
....||..|...|++++|.++++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45789999999999999999999863
No 128
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=62.38 E-value=15 Score=27.62 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=30.2
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
..-++..++|+.+|+|.-.+-.+|..+..+|++.
T Consensus 13 ~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~ 46 (62)
T PF04703_consen 13 NGPLKTREIADALGLSIYQARYYLEKLEKEGKVE 46 (62)
T ss_dssp TS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 6678999999999999999999999999999985
No 129
>KOG3060|consensus
Probab=62.19 E-value=1e+02 Score=30.07 Aligned_cols=114 Identities=15% Similarity=0.051 Sum_probs=69.1
Q ss_pred chHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChH
Q psy7321 85 PVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPV 164 (408)
Q Consensus 85 ~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~ 164 (408)
..|+..|+.=-||. .|+...-|..+|..|.|.+|.+.+..+.-|-.-..+.-+-|+- +....|...
T Consensus 72 q~C~~~L~~~fp~S-------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA-------ilka~GK~l 137 (289)
T KOG3060|consen 72 QKCINQLRDRFPGS-------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA-------ILKAQGKNL 137 (289)
T ss_pred HHHHHHHHHhCCCC-------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH-------HHHHcCCcH
Confidence 45666665444664 3445667899999999999999999875443111111122333 223334444
Q ss_pred HHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy7321 165 QAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPI 218 (408)
Q Consensus 165 ~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~ 218 (408)
.|-.-+|.=-..+. +|++. .-..+.+|...++|..||-||-|+.-+.+
T Consensus 138 ~aIk~ln~YL~~F~--~D~EA----W~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 138 EAIKELNEYLDKFM--NDQEA----WHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHHHHHHhc--CcHHH----HHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 44333433333232 34443 23468899999999999999999887643
No 130
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=61.95 E-value=14 Score=26.19 Aligned_cols=37 Identities=11% Similarity=0.299 Sum_probs=30.9
Q ss_pred HhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 315 SKLYNNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 315 sk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
+..=..+++.+||+.+|+|..-+-.++..|...|-+.
T Consensus 13 ~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 13 AESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp HCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCee
Confidence 3444558999999999999999999999999999764
No 131
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.04 E-value=12 Score=22.48 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHh
Q psy7321 107 SIRQHLALIYEREENWRDAANVLV 130 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~ 130 (408)
+.+..||..+...||+++|...+.
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456789999999999999998865
No 132
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=60.79 E-value=15 Score=31.23 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=34.9
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..++..+||+.+|+|+..+.+.+..|...|-+.+.-....|
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g~~gg 64 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRGVEGG 64 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCCCCCC
Confidence 46899999999999999999999999999999775333334
No 133
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=60.68 E-value=1.8e+02 Score=29.61 Aligned_cols=94 Identities=7% Similarity=0.014 Sum_probs=51.7
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHH
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYK 190 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~ 190 (408)
..|.+....|++++|.+.|.... + ..++..+.+-+..+++++..+++..|...+.+..... ..++.. .
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~-~-----~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~----l 190 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAA-E-----LAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEV----L 190 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-H-----hCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH----H
Confidence 34566666677777776666531 1 1122333444445777777777777776666554422 122222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 191 VCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 191 ~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
...+.++...++|-+|-..+..+...
T Consensus 191 ~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 191 KLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 24566666677776666666555543
No 134
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=60.22 E-value=64 Score=36.05 Aligned_cols=102 Identities=19% Similarity=0.072 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccc--------cccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccC
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETG--------QKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAET 180 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~--------~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~ 180 (408)
...|+..+.+.|++++|...+..+.-... ....+.....+.++..+.++...+|+..|...+.++.... .
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P 390 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--P 390 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 45567778999999999999887653221 0122334577888899999999999999999999886533 2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 181 KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 181 ~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
++.++. ...|.++...+++-+|-..|..+...
T Consensus 391 ~n~~l~----~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 391 GNQGLR----IDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred CCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 344543 34688888889999999999988764
No 135
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=59.97 E-value=56 Score=35.29 Aligned_cols=98 Identities=9% Similarity=-0.063 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
......+|.++...|++++|...+... ++. ++ .-.+++.....+++..+|+..|.....++-.... .+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~a-l~~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P--~~~~~ 435 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKA-LKL-----NS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP--DFIFS 435 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc--cCHHH
Confidence 345567888899999999999988875 222 11 1246778888899999999999998888865322 12221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+...|.++...++|-+|-..|.++...
T Consensus 436 ----~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 436 ----HIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred ----HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 224566666778888888888877654
No 136
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=59.48 E-value=19 Score=24.28 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=31.7
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhH
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSW 372 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W 372 (408)
+|++++|+.||+|... +-+++.+|.|.+... .+...|.. +.+..|
T Consensus 2 lt~~e~a~~lgis~~t----i~~~~~~g~i~~~~~--g~~~~~~~-~~l~~~ 46 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDT----VYRLIHEGELPAYRV--GRHYRIPR-EDVDEY 46 (49)
T ss_pred CCHHHHHHHHCCCHHH----HHHHHHcCCCCeEEe--CCeEEEeH-HHHHHH
Confidence 5789999999999875 455678999987543 45555643 344455
No 137
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=59.43 E-value=53 Score=36.73 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.......+|.++...|++++|.+.|.++.. . .++. .++++..+.++...+++.+|...+.++..... .+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-~-----~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P--d~~~ 428 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAY-N-----APGN-QGLRIDYASVLQARGWPRAAENELKKAEVLEP--RNIN 428 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CChH
Confidence 345667899999999999999999998742 2 2222 57889999999999999999999999876432 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
++...+..+...++|-+|-..+.++...
T Consensus 429 ----l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 429 ----LEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3345677777788999999999998865
No 138
>PRK09954 putative kinase; Provisional
Probab=59.41 E-value=26 Score=35.10 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE---EEeccCCcEEEec
Q psy7321 311 LLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMN---GYVDQIDSIVHFE 364 (408)
Q Consensus 311 i~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~---akIDqv~giV~F~ 364 (408)
|+.+-+--.+++..+||+.||+|...+-+.+.+|..+|.+. ..+|+..+++.+.
T Consensus 8 il~~l~~~~~~s~~~la~~l~~s~~~v~~~i~~L~~~g~i~~~~~~l~~~~~v~viG 64 (362)
T PRK09954 8 ILAILRRNPLIQQNEIADILQISRSRVAAHIMDLMRKGRIKGKGYILTEQEYCVVVG 64 (362)
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCcEEEEcCCccEEEEE
Confidence 33333344689999999999999999999999999999884 3677777776553
No 139
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=59.16 E-value=46 Score=28.77 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=41.4
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
..++.++||+.+|+|...+.+.+.++...|-+..+=-...|+.....+
T Consensus 24 ~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~ 71 (141)
T PRK11014 24 RMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPA 71 (141)
T ss_pred CccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecCCH
Confidence 468999999999999999999999999999998877777777665544
No 140
>KOG3785|consensus
Probab=58.65 E-value=99 Score=31.66 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=84.0
Q ss_pred HhcCCCCcchhchHHHHHhhhcCccchHHHH------HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHH
Q psy7321 74 HLVSQPDEVAKPVSHFTLDKVQPRVISFEEQ------VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKL 147 (408)
Q Consensus 74 ~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e------~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kl 147 (408)
.-++||+.+....+.+.....-+--+|+-.= .-..-..+|+.+...|++.+|-+.+..|. .++.+.|.
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is------~~~ikn~~ 428 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS------GPEIKNKI 428 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc------ChhhhhhH
Confidence 3456787666666665554443333322111 12234789999999999999999998763 24556677
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 148 QTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 148 e~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
-+..-.+|.|+..+.+..|-...-|.+..-. ..--|+ ..|.-+---+.|--||+.|.++-.
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e--~fsLLq-----lIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKTNTPSE--RFSLLQ-----LIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCchh--HHHHHH-----HHHHHHHHHHHHHHHHHhhhHHHc
Confidence 7777889999999999998776655554211 111222 334444446789999999987754
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.64 E-value=30 Score=33.50 Aligned_cols=92 Identities=10% Similarity=0.078 Sum_probs=66.0
Q ss_pred HhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc-CCcHHHHHHHHHHHHH
Q psy7321 117 EREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE-TKDETLQVHYKVCYAR 195 (408)
Q Consensus 117 e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~-~~~~~lk~~y~~~~a~ 195 (408)
.+.|+|.+|...+..+.- . + -+..+.-..+.....+|+..+|+..|..+..+.-....+ ...++- .| ..|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~-~-y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA--l~--klg~ 225 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK-K-Y--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA--MF--KVGV 225 (263)
T ss_pred HhcCCHHHHHHHHHHHHH-H-C--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH--HH--HHHH
Confidence 445899999999988642 2 1 122344566778899999999999999999888654322 122333 22 3678
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q psy7321 196 VLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 196 i~~~~r~f~eAa~~y~e~~~t 216 (408)
++...+++-+|...|.++...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999999998865
No 142
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=58.51 E-value=27 Score=29.51 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=35.3
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIV 361 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV 361 (408)
.++.++||+.+|+|+..+.+.+..|...|-+...-....|+.
T Consensus 25 ~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy~ 66 (132)
T TIGR00738 25 PVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGYR 66 (132)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCcc
Confidence 689999999999999999999999999999876434444543
No 143
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=58.50 E-value=38 Score=29.97 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=36.2
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIV 361 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV 361 (408)
.++.++||+..|+|+..+++++..+...|-+...==...|+.
T Consensus 24 ~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~ 65 (153)
T PRK11920 24 LSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVR 65 (153)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCee
Confidence 479999999999999999999999999999877665555554
No 144
>KOG2300|consensus
Probab=58.18 E-value=2.6e+02 Score=29.87 Aligned_cols=145 Identities=17% Similarity=0.096 Sum_probs=98.9
Q ss_pred hHHHHHhhh--cCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCCh
Q psy7321 86 VSHFTLDKV--QPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDP 163 (408)
Q Consensus 86 ~~~~~L~~i--~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~ 163 (408)
......+|+ +||..-+-.--+.+...++-+-..-|-+++|..-..+..-.| -+.+-++-.-+..+=.||..+|-
T Consensus 345 ~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t----~~~dl~a~~nlnlAi~YL~~~~~ 420 (629)
T KOG2300|consen 345 EIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT----ESIDLQAFCNLNLAISYLRIGDA 420 (629)
T ss_pred HHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh----hHHHHHHHHHHhHHHHHHHhccH
Confidence 344556666 367655555567777888888889999999988776644333 12233455555667778888887
Q ss_pred HHHHHHHHHhcccc-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHHHH
Q psy7321 164 VQAEAFINRASLLQ-AETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEA-ERITALKSALICT 235 (408)
Q Consensus 164 ~~A~~~i~Ka~~~~-~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~-e~~~~L~~av~~~ 235 (408)
..-...+..++... +.....-++.-++..+|.....+++|.||-+..+|..+... .++ -|+.++....+.-
T Consensus 421 ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman-aed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 421 EDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN-AEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHH
Confidence 77777777776542 23345678888888889999999999999999999987532 222 2666665444443
No 145
>KOG2002|consensus
Probab=57.78 E-value=77 Score=36.18 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHY 189 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y 189 (408)
..||.+|...||+..+..+....-.- +.....+.+-+....|.|...|||.+|..|.-.+...-. +. --+.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~----t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~---d~-~~l~- 344 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKN----TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN---DN-FVLP- 344 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC---CC-cccc-
Confidence 34555555555555555443332111 122233445555556666666666666555433322110 00 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+.-.|.++.+++++.+|..+|..++..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 112345555555666666665555543
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=57.64 E-value=1.2e+02 Score=31.39 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.-.|+.-|-+++...+.++.|.+++.++...- + ++...++|+++..++-.+|-..++++-... ..+.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~------p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~ 235 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD------P----EVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSE 235 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC------C----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHH
Confidence 46777888899999999999999999975321 1 356668999999999999988888886422 12333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+ ...+++++..+++|..|-.....+...
T Consensus 236 L----L~~Qa~fLl~k~~~~lAL~iAk~av~l 263 (395)
T PF09295_consen 236 L----LNLQAEFLLSKKKYELALEIAKKAVEL 263 (395)
T ss_pred H----HHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3 346899999999998888888877654
No 147
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=57.37 E-value=2.7e+02 Score=29.82 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
+..-||.+|...|++++|...+...---| -..+|+|+.-+|++=..||+..|-..++.|..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT-------PTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 44668999999999999998877532112 125789999999999999999999988888764
No 148
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=57.16 E-value=35 Score=24.52 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=28.0
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 322 SFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 322 tl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
+..+||..+|+|...+-+.+.+|...|-|.
T Consensus 27 ~~~~la~~~~is~~~v~~~l~~L~~~G~i~ 56 (66)
T cd07377 27 SERELAEELGVSRTTVREALRELEAEGLVE 56 (66)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 489999999999999999999999999875
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=56.93 E-value=54 Score=23.41 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 149 TYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 149 ~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+..++..+...+++..|..+..++-.... .++ ......+.++...++|.+|-..|..+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP--DNA----DAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC--ccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456778888999999999998888754322 232 23345678888889999999988887653
No 150
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=56.89 E-value=1.7e+02 Score=29.87 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=67.0
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHH
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYK 190 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~ 190 (408)
.-+-+...+|||.+|.+.+..-+-. + +...-.++.-++.....||+..|..++.++..... +.. ....
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~------~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~---~~~--~~~~ 156 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADH------A-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELAD---NDQ--LPVE 156 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc------c-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---cch--HHHH
Confidence 3455566689999999888863321 1 12445577888999999999999999999865321 211 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 191 VCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 191 ~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
...++++...++|-.|-..+......
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~ 182 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEV 182 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 24588899999999999999888765
No 151
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=56.79 E-value=75 Score=26.21 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ 177 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~ 177 (408)
......+|..+...|++.+|...+..... ++ ..-.+.+.....+|...+|+.+|..+..++....
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAA------LD-PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34556789999999999999998886421 11 1235667778889999999999999998887643
No 152
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=56.27 E-value=40 Score=33.00 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRAS 174 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~ 174 (408)
.....+|.+|...|++++|...+....... . . +.......+...+++++..||+..|...++++.
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~-~-~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTW-D-C-SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-C-C-CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 455778999999999999999998753211 1 1 334456678889999999999999999998874
No 153
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=56.23 E-value=49 Score=29.73 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=40.1
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
..++.++||+.+|+|+..+++++..+...|-+...=....|+.--.++
T Consensus 24 ~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p 71 (164)
T PRK10857 24 GPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDA 71 (164)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCH
Confidence 359999999999999999999999999999998865666666544443
No 154
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=56.07 E-value=36 Score=30.04 Aligned_cols=45 Identities=20% Similarity=0.102 Sum_probs=39.0
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
-++.+.||+..|+|+..++++++.+...|-+...==...|+.--.
T Consensus 25 ~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar 69 (150)
T COG1959 25 PVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYRLAR 69 (150)
T ss_pred cccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCccCCC
Confidence 688999999999999999999999999999988766666665443
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=55.98 E-value=56 Score=28.65 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=63.2
Q ss_pred ccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHH
Q psy7321 120 ENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDY 199 (408)
Q Consensus 120 gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~ 199 (408)
.++..+...|..+- +..+...+...++....++...+++..|.....++-....+ +.+ ...-+...|.++..
T Consensus 13 ~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~-~~~~~~~lg~~~~~ 84 (168)
T CHL00033 13 KTFTIVADILLRIL-----PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYD-RSYILYNIGLIHTS 84 (168)
T ss_pred cccccchhhhhHhc-----cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chh-hHHHHHHHHHHHHH
Confidence 34556666665541 23455568899999999999999999999999988654321 111 12234457888888
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy7321 200 RRKFIEAAQRYSELSYK 216 (408)
Q Consensus 200 ~r~f~eAa~~y~e~~~t 216 (408)
.++|-+|-..|..+...
T Consensus 85 ~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 85 NGEHTKALEYYFQALER 101 (168)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999888754
No 156
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=55.35 E-value=56 Score=31.38 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=47.4
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc-EEEecCC-CchhhHHHHHHHHHHHHH
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS-IVHFETR-EILPSWDKQIESLCYRID 384 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g-iV~F~~~-~~l~~W~~~I~~l~~~v~ 384 (408)
-+++-+++|..+|++++.+-.++-+||.+|-+.- ...| +....+. +-+-+|-++++.+.+.+.
T Consensus 24 p~v~q~eIA~~lgiT~QaVsehiK~Lv~eG~i~~---~gR~~Y~iTkkG~e~l~~~~~dlr~f~~ev~ 88 (260)
T COG1497 24 PRVKQKEIAKKLGITLQAVSEHIKELVKEGLIEK---EGRGEYEITKKGAEWLLEQLSDLRRFSEEVE 88 (260)
T ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHHhccceee---cCCeeEEEehhHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999997754 1221 3333332 567777777777777764
No 157
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=55.06 E-value=22 Score=21.93 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcC
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGI 132 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i 132 (408)
..-..+|.+|...|++++|.+.+...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45578999999999999999988763
No 158
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=54.99 E-value=1.6e+02 Score=27.06 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=44.0
Q ss_pred HHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 307 TEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 307 iEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
.|+.++.+......++..+||+.++++..-+=..+.+|...|-|.=..|..|+-
T Consensus 46 ~q~~iL~~L~~~~~itq~eLa~~l~l~~sTvtr~l~rLE~kGlI~R~~~~~DrR 99 (185)
T PRK13777 46 NEHHILWIAYHLKGASISEIAKFGVMHVSTAFNFSKKLEERGYLTFSKKEDDKR 99 (185)
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCC
Confidence 455555555456689999999999999999999999999999998777776663
No 159
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=54.83 E-value=42 Score=24.65 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q psy7321 199 YRRKFIEAAQRYSELS 214 (408)
Q Consensus 199 ~~r~f~eAa~~y~e~~ 214 (408)
..++|.+|-..+..+.
T Consensus 7 ~~~~~~~A~~~~~~~l 22 (73)
T PF13371_consen 7 QQEDYEEALEVLERAL 22 (73)
T ss_pred hCCCHHHHHHHHHHHH
Confidence 3344444444444333
No 160
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.25 E-value=1.7e+02 Score=27.41 Aligned_cols=117 Identities=15% Similarity=0.050 Sum_probs=83.8
Q ss_pred hHHHHHhhh--cCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCCh
Q psy7321 86 VSHFTLDKV--QPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDP 163 (408)
Q Consensus 86 ~~~~~L~~i--~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~ 163 (408)
..+..+.+. ..|+..+ -.--...+|+.+.+.|++++|...|.-..- .+.+...|.=.-++.+|+.+..+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Y---a~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~ 142 (207)
T COG2976 70 KSIAAAEKFVQANGKTIY---AVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKA 142 (207)
T ss_pred hhHHHHHHHHhhccccHH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhH
Confidence 345555555 2445544 234457899999999999999999886421 2234556777888999999999999
Q ss_pred HHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 164 VQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 164 ~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+.|-..++-... +....++-...|-++...+|=-+|-..|-.....
T Consensus 143 D~AL~~L~t~~~-------~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 143 DAALKTLDTIKE-------ESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHhcccc-------ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 999776643332 2223445566789999999999999999888765
No 161
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=53.81 E-value=24 Score=29.15 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=33.4
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHHhcCce
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMICEGRM 350 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl 350 (408)
|....|+.+.++++.|+++..+.+.+..+|..|.|
T Consensus 50 Kk~d~Is~sq~~e~tg~~~~~V~~al~~Li~~~vI 84 (100)
T PF04492_consen 50 KKMDRISNSQIAEMTGLSRDHVSKALNELIRRGVI 84 (100)
T ss_pred CccceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 56789999999999999999999999999999998
No 162
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=53.61 E-value=53 Score=31.35 Aligned_cols=22 Identities=27% Similarity=0.114 Sum_probs=11.1
Q ss_pred HHHHHHHHhhccHHHHHHHHhc
Q psy7321 110 QHLALIYEREENWRDAANVLVG 131 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~ 131 (408)
..+|.++.+.|++++|.+.+..
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4445555555555555555444
No 163
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=53.55 E-value=21 Score=22.95 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcC
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGI 132 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i 132 (408)
+.....||.+|...|++++|.+.+.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 455678999999999999999998875
No 164
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=53.14 E-value=24 Score=25.62 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.9
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
.+++++||+.||+|+.-+...+-+..
T Consensus 23 ~~tl~elA~~lgis~st~~~~LRrae 48 (53)
T PF04967_consen 23 RITLEELAEELGISKSTVSEHLRRAE 48 (53)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999998888877654
No 165
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=53.02 E-value=23 Score=25.71 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLE 135 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~E 135 (408)
..++..||.+|.+.|++++|..+|..+...
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678999999999999999999998643
No 166
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=52.83 E-value=54 Score=29.48 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhc---CCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCcc
Q psy7321 64 SRQILTDVSTHLV---SQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPL 134 (408)
Q Consensus 64 ~r~iv~~~~~~l~---~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~ 134 (408)
+..+|..+++.+. ...+....+.++.+|+.+.|+..-+ ..--+-++-..|+|.+|..+|.++.-
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~-------~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL-------DLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH-------HHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3445555555432 1223344567889999999985543 45567889999999999999999743
No 167
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=52.82 E-value=76 Score=33.39 Aligned_cols=105 Identities=18% Similarity=0.095 Sum_probs=69.1
Q ss_pred hccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHH
Q psy7321 119 EENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLD 198 (408)
Q Consensus 119 ~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~ 198 (408)
.++...|-++|...+- ..+.+ .=+.+...|++...+|.+.|-..++++-.... .-++++.-.+-=.+-.+.
T Consensus 246 ~~~~~~a~~lL~~~~~-----~yP~s--~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK-----RYPNS--ALFLFFEGRLERLKGNLEEAIESFERAIESQS--EWKQLHHLCYFELAWCHM 316 (468)
T ss_pred CCCHHHHHHHHHHHHH-----hCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHhccchh--hHHhHHHHHHHHHHHHHH
Confidence 5577778888777542 23332 23456789999999999999999998764222 122333322223456677
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q psy7321 199 YRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTIL 237 (408)
Q Consensus 199 ~~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~~~IL 237 (408)
...+|.+|+.+|..+.. ++.|.+++...+.++.+
T Consensus 317 ~~~~w~~A~~~f~~L~~-----~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLK-----ESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHchHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHH
Confidence 89999999999999974 34566666544444443
No 168
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=52.64 E-value=33 Score=32.77 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=42.4
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHY 189 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y 189 (408)
..|+.+ ...|++.+|.+++... +.... .-+.+...+.++...+++.++...++++........+ ..|
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~-----~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~ 148 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKA-----YERDG---DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS----ARF 148 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-----HHH
T ss_pred cccccc-cccccccccccccccc-----ccccc---ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC----HHH
Confidence 456677 6889999999987652 22111 2344556677889999999999999997642211122 445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+...|.++...+++.+|-..|..+...
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 667899999999999999999988864
No 169
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=52.50 E-value=74 Score=27.45 Aligned_cols=91 Identities=14% Similarity=0.220 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchhhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHH
Q psy7321 263 YSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIAS 342 (408)
Q Consensus 263 ~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls 342 (408)
...++++++. |+..|+.-|...|+++ .-.|.++||+.|+.+..-+.+-+-
T Consensus 15 ~~dvl~c~~G--Ls~~Dv~v~~~LL~~~----------------------------~~~tvdelae~lnr~rStv~rsl~ 64 (126)
T COG3355 15 CEDVLKCVYG--LSELDVEVYKALLEEN----------------------------GPLTVDELAEILNRSRSTVYRSLQ 64 (126)
T ss_pred HHHHHHHHhC--CcHHHHHHHHHHHhhc----------------------------CCcCHHHHHHHHCccHHHHHHHHH
Confidence 4566666655 4445666666666433 234678899999999999999999
Q ss_pred HHHhcCceE-EEec-cCCcE--EEecCC---------CchhhHHHHHHHHHHHH
Q psy7321 343 HMICEGRMN-GYVD-QIDSI--VHFETR---------EILPSWDKQIESLCYRI 383 (408)
Q Consensus 343 ~mI~~grl~-akID-qv~gi--V~F~~~---------~~l~~W~~~I~~l~~~v 383 (408)
+++.-|-+. =++. ...|. ++.-.+ ..++.|..++.+..+..
T Consensus 65 ~L~~~GlV~Rek~~~~~Ggy~yiY~~i~~ee~k~~i~~~l~~w~~~~~~~i~~~ 118 (126)
T COG3355 65 NLLEAGLVEREKVNLKGGGYYYLYKPIDPEEIKKKILKDLDEWYDKMKQLIEEF 118 (126)
T ss_pred HHHHcCCeeeeeeccCCCceeEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999884 3444 33333 332222 24556666655555443
No 170
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=51.96 E-value=34 Score=23.67 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=29.2
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
...++.+|++.+|+|...+-..+..|...|-+.
T Consensus 14 ~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 14 GPLTVSELAEELGLSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCchhhHHHhccccchHHHHHHHHHHHCcCee
Confidence 667899999999999999999999999999764
No 171
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=51.69 E-value=38 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=20.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHH
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHM 344 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~m 344 (408)
.+.++..||+.+|+|+..+-.=+.+|
T Consensus 16 ~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 16 GRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 89999999999999999887766654
No 172
>KOG1586|consensus
Probab=51.66 E-value=2.4e+02 Score=27.41 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
+|.+.|-.+=|.+|--..+|..|-..+... .+. +...+.++-.-..--.+-.|....|+..|-..+.++..+.-+-+.
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflka-A~~-h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Gr 108 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKA-ADL-HLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGR 108 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHH-HHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhH
Confidence 345666666666666666666665554432 112 222222333333333455566666888888878777766544454
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHHHHHHh
Q psy7321 183 ETLQVHYKVCYARVLDYR-RKFIEAAQRYSELSYKPIIDE---AERITALKSALICTIL 237 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~-r~f~eAa~~y~e~~~t~~i~~---~e~~~~L~~av~~~IL 237 (408)
-.+-.+|+...|.|+-.+ .+|..|-.+|...-+-...++ ..-...|+.+-+.+.|
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 455567777778887776 677777666665432211111 1123445556666665
No 173
>KOG3060|consensus
Probab=51.48 E-value=2.5e+02 Score=27.55 Aligned_cols=64 Identities=20% Similarity=0.106 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhh-cCChHHHHHHHHHhc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLE-DEDPVQAEAFINRAS 174 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~-~~D~~~A~~~i~Ka~ 174 (408)
+..=..||++|.+.|+|.+|+-+|.++-+-+++ .+..-.-+-.++.+.. ..+...|..|..|+-
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-----n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-----NPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334467899999999999999999998765422 2222222222333332 345555666666654
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=50.27 E-value=89 Score=31.51 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
..+...+|..|...|++.+|...+.... +. .+. -...++....+|+..++|..|...+.++.... .++.+.
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l-----~P~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--P~~~~~ 106 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAI-EL-----DPS-LAKAYLRKGTACMKLEEYQTAKAALEKGASLA--PGDSRF 106 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 3455788999999999999999988752 11 221 24567888999999999999999999987643 345566
Q ss_pred HHHHHHHHHHH
Q psy7321 186 QVHYKVCYARV 196 (408)
Q Consensus 186 k~~y~~~~a~i 196 (408)
......|..++
T Consensus 107 ~~~l~~~~~kl 117 (356)
T PLN03088 107 TKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHH
Confidence 55555555555
No 175
>PLN03218 maturation of RBCL 1; Provisional
Probab=50.20 E-value=4.9e+02 Score=30.61 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=66.0
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHY 189 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y 189 (408)
..|...|.+.|++++|.+++.++..+. .+ +.+. ...|...+..|...+++..|..+..+....-.. .+ ...
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~-~g-i~PD--~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~-p~----~~t 616 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAET-HP-IDPD--HITVGALMKACANAGQVDRAKEVYQMIHEYNIK-GT----PEV 616 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhc-CC-CCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CC----hHH
Confidence 456677888899999999988875432 11 1221 456777888899999999998887776542111 11 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+...+..+...+++.+|-..|.+....
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 455566666678888888888887754
No 176
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=50.00 E-value=31 Score=21.37 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHhcc
Q psy7321 148 QTYMKIARLYLEDEDPVQAEAFINRASL 175 (408)
Q Consensus 148 e~~L~i~RL~L~~~D~~~A~~~i~Ka~~ 175 (408)
+++..+.++|...+|+..|..++.++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888999999999888877754
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=49.89 E-value=72 Score=30.90 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=42.4
Q ss_pred HHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 151 MKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 151 L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
-.-.-+.+..+||..|-....+.-....+... .-...| ..|..+...++|.+|...|..+...
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~-a~~A~y--~LG~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY-QPNANY--WLGQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc-hHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33345566779999998877766543322111 112333 5788888899999999999998864
No 178
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=49.84 E-value=54 Score=23.94 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=32.7
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCC
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQID 358 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~ 358 (408)
.....++..+|++.++++...+-+.+.+|+..|-+.=.=|..+
T Consensus 14 ~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d 56 (68)
T PF13463_consen 14 HSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHD 56 (68)
T ss_dssp --TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSC
T ss_pred ccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCc
Confidence 4678899999999999999999999999999999955544433
No 179
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=49.61 E-value=2.5e+02 Score=27.18 Aligned_cols=146 Identities=15% Similarity=0.135 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhH
Q psy7321 67 ILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYK 146 (408)
Q Consensus 67 iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~K 146 (408)
++..--..++.+++...-..-+-.++.+--+.+....+.+..-..+|++.-+.|.+.-|...|..+.-. ........
T Consensus 107 l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~---~~~~~~~~ 183 (352)
T PF02259_consen 107 LLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQL---NPSSESLL 183 (352)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc---CCcccCCC
Confidence 555555566665554322222334444444444667788888999999999999999999998876421 11111125
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhcc-ccc---------------------------cCCcHHHHHHHHHHHHHHHH
Q psy7321 147 LQTYMKIARLYLEDEDPVQAEAFINRASL-LQA---------------------------ETKDETLQVHYKVCYARVLD 198 (408)
Q Consensus 147 le~~L~i~RL~L~~~D~~~A~~~i~Ka~~-~~~---------------------------~~~~~~lk~~y~~~~a~i~~ 198 (408)
..+.++.+++.-..|+...|-..+...-. ... .....+++.+.+...|...+
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 67778889999999999888665433322 110 11123455555555666655
Q ss_pred HH------HHHHHHHHHHHHHhc
Q psy7321 199 YR------RKFIEAAQRYSELSY 215 (408)
Q Consensus 199 ~~------r~f~eAa~~y~e~~~ 215 (408)
.. .++.++.+.|.++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~ 286 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATK 286 (352)
T ss_pred hhccccccccHHHHHHHHHHHHH
Confidence 55 556666666666653
No 180
>PF12854 PPR_1: PPR repeat
Probab=48.69 E-value=21 Score=23.01 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.3
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCc
Q psy7321 110 QHLALIYEREENWRDAANVLVGIP 133 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~ 133 (408)
..|-+-|++.|++++|.+++.+++
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCc
Confidence 456788999999999999998763
No 181
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=48.54 E-value=43 Score=28.93 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=34.0
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE---EEecc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMN---GYVDQ 356 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~---akIDq 356 (408)
.++++.+||+.+|+|+..+-.-+-++..+|-|. +.+|.
T Consensus 21 ~r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~~~~~v~~ 61 (154)
T COG1522 21 ARISNAELAERVGLSPSTVLRRIKRLEEEGVIKGYTAVLDP 61 (154)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCceeeEEEEECH
Confidence 459999999999999999999999999999774 57775
No 182
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=48.19 E-value=68 Score=23.34 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=32.6
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
..-...++.+||+.+|+|+..+-..+..|...|-|..
T Consensus 20 ~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~ 56 (61)
T PF12840_consen 20 ASNGPMTVSELAEELGISQSTVSYHLKKLEEAGLIEV 56 (61)
T ss_dssp HHCSTBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred hcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEE
Confidence 3478899999999999999999999999999998865
No 183
>KOG1155|consensus
Probab=48.07 E-value=36 Score=35.75 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCcccc--ccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcc
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLET--GQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL 175 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et--~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~ 175 (408)
..||++||+-+|..+|+..+..- +++ ..|..+++ -.+..+=.++.+...+||.+|..|.+++..
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~-v~~~~~eg~~~~~-t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKY-VEVSELEGEIDDE-TIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH-HHHHHhhcccchH-HHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 45777777777777777766543 222 12223331 222223356667777777777777766654
No 184
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=47.99 E-value=57 Score=28.10 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=39.6
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
-..++..+||+.+|+++.-+=..+.+|+..|-|.=.-|..|+-
T Consensus 52 ~~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR 94 (144)
T PRK11512 52 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 94 (144)
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCC
Confidence 3579999999999999999999999999999999998888773
No 185
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=47.48 E-value=76 Score=24.67 Aligned_cols=43 Identities=21% Similarity=0.126 Sum_probs=36.1
Q ss_pred HHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 308 EHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 308 EhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
+--+..+|+- ++|+++|-+..|++...+--.+++|-..|.|.=
T Consensus 8 ~~IL~~ls~~--c~TLeeL~ekTgi~k~~LlV~LsrL~k~GiI~R 50 (72)
T PF05584_consen 8 QKILIILSKR--CCTLEELEEKTGISKNTLLVYLSRLAKRGIIER 50 (72)
T ss_pred HHHHHHHHhc--cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeee
Confidence 3334445555 999999999999999999999999999998854
No 186
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=47.08 E-value=29 Score=24.55 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=26.2
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEG 348 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~g 348 (408)
||.++||+.||+|..-+.+.+..+-..|
T Consensus 16 it~~eLa~~l~vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 16 ITAKELAEELGVSRRTIRRDIKELREWG 43 (55)
T ss_dssp BEHHHHHHHCTS-HHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999998888
No 187
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=46.57 E-value=1.9e+02 Score=27.05 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=57.8
Q ss_pred CCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc----c-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 141 YSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA----E-----TKDETLQVHYKVCYARVLDYRRKFIEAAQRYS 211 (408)
Q Consensus 141 ~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~----~-----~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~ 211 (408)
.+...+..++|+++-||-+.+|......++.+|-.... . .+..+..+-| +.|-+.---++|.+|.+.|-
T Consensus 112 ~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y--LigeL~rrlg~~~eA~~~fs 189 (214)
T PF09986_consen 112 EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY--LIGELNRRLGNYDEAKRWFS 189 (214)
T ss_pred CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH--HHHHHHHHhCCHHHHHHHHH
Confidence 35568999999999999999999999999888864321 1 1224555544 45555555789999999999
Q ss_pred HHhcCCCCCh
Q psy7321 212 ELSYKPIIDE 221 (408)
Q Consensus 212 e~~~t~~i~~ 221 (408)
.++..+....
T Consensus 190 ~vi~~~~~s~ 199 (214)
T PF09986_consen 190 RVIGSKKASK 199 (214)
T ss_pred HHHcCCCCCC
Confidence 9998754433
No 188
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=45.80 E-value=49 Score=31.69 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=36.1
Q ss_pred HHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 310 NLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 310 Ni~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
.|+.+-+-...++.++|++.||+|+.-+.+.+..|-..|.+.
T Consensus 9 ~Il~~l~~~~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~ 50 (251)
T PRK13509 9 ILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLK 50 (251)
T ss_pred HHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344444567899999999999999999999999999998884
No 189
>KOG0543|consensus
Probab=45.67 E-value=1.6e+02 Score=30.44 Aligned_cols=170 Identities=12% Similarity=0.067 Sum_probs=99.7
Q ss_pred cchhHHHHHHHHHHhhccchhhchHH--HHHHHHHHhcCCCCcch---hchHHHHH-hhhcCccchHH--HHHHHHHHHH
Q psy7321 41 TTCTECLNLFVEAIVNENVSLVISRQ--ILTDVSTHLVSQPDEVA---KPVSHFTL-DKVQPRVISFE--EQVASIRQHL 112 (408)
Q Consensus 41 ~~~~~~l~~~~~~~~~e~v~~~~~r~--iv~~~~~~l~~l~~~~~---~~~~~~~L-~~i~~~~i~~E--~e~a~l~~~L 112 (408)
.+++++|---+..+-..-+.+|.-.. ---.--...+.||+.+. ...++... ..-.+++.+-| .+.|.....-
T Consensus 135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~ 214 (397)
T KOG0543|consen 135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKER 214 (397)
T ss_pred cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHh
Confidence 35777777777777655555555433 11111112334554422 11111111 11123333333 2345555666
Q ss_pred HHHHHhhccHHHHHHHHhcCcccc-ccccCCch-------hHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 113 ALIYEREENWRDAANVLVGIPLET-GQKQYSVD-------YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 113 A~~~e~~gd~~eAa~~L~~i~~Et-~~~~~~~~-------~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
+..|.+.|+|..|...+...-..- +.++.+++ -|+-.+|..+-.|+..++|..|-...+|+-.... ++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~N-- 290 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP--NN-- 290 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--Cc--
Confidence 888999999999988865521111 12222332 2688889999999999999999999999876432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.|.-|+ .|+.+...++|-.|=..|..+..-
T Consensus 291 ~KALyR--rG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 291 VKALYR--RGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHH--HHHHHHhhccHHHHHHHHHHHHHh
Confidence 234443 477777788888888888887754
No 190
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.05 E-value=1.4e+02 Score=25.79 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=49.1
Q ss_pred HHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE-EEecCCCchhhHHHHHHHH
Q psy7321 313 SASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI-VHFETREILPSWDKQIESL 379 (408)
Q Consensus 313 ~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi-V~F~~~~~l~~W~~~I~~l 379 (408)
.+.+-=-++|+.+|...+|++-..+...+.+++..|.|+- .|. =.|.+.....+|+..-.++
T Consensus 19 ElVRe~GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~~-----~G~~GvF~seqA~~dw~~~~~~~ 81 (127)
T PF06163_consen 19 ELVREHGRITIKQLVAKTGASRNTVKRYLRELVARGDLYR-----HGRSGVFPSEQARKDWDKARKKL 81 (127)
T ss_pred HHHHHcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeEe-----CCCccccccHHHHHHHHHhHHhh
Confidence 3445667999999999999999999999999999999864 222 3565556778898777655
No 191
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=44.50 E-value=2.6e+02 Score=30.72 Aligned_cols=97 Identities=15% Similarity=-0.035 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|.++...|++++|...+.... +. ++. -.+.+....+.+...+++..|.....++..... .+.
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al-~l-----~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P--~~~--- 352 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSL-AT-----HPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKG--VTS--- 352 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-----CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--cch---
Confidence 455667778888888888877777643 11 111 123444567777788888888777766653211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+....+..+...+++-+|-..|..+...
T Consensus 353 -~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 -KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 12223455666677888888888776654
No 192
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=44.37 E-value=54 Score=31.24 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=36.0
Q ss_pred HHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 310 NLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 310 Ni~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
.|..+-+-...++.++|++.||+|+.-+.+.+..|...|.+.-
T Consensus 8 ~Il~~l~~~~~~~~~eLa~~l~VS~~TiRRdL~~L~~~~~l~r 50 (240)
T PRK10411 8 AIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILR 50 (240)
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3444444578999999999999999999999999999888753
No 193
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=43.21 E-value=1.7e+02 Score=24.60 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=52.2
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE--EEeccCCc-EEEecCCCchhhHHHHHHHHH--HHHHHHHHHHHh
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMN--GYVDQIDS-IVHFETREILPSWDKQIESLC--YRIDHIMEQIET 392 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~--akIDqv~g-iV~F~~~~~l~~W~~~I~~l~--~~v~~v~~~i~~ 392 (408)
-..+|+++||+.|..|+-.+-..+-+|...|-|. ...=|.+. .++|..+ +-..--..+..++ ..++.+...+.
T Consensus 17 ~~~vtl~elA~~l~cS~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~-~~~~~~~~~~~~l~~g~~~~a~~ll~- 94 (115)
T PF12793_consen 17 PVEVTLDELAELLFCSRRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKS-PEELLEQQAEELLEQGKYEQALQLLD- 94 (115)
T ss_pred CcceeHHHHHHHhCCCHHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeC-HHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 4578999999999999999999999999999884 33333333 3565432 1111111222222 23445556666
Q ss_pred hChhhhhhhhhhh
Q psy7321 393 VQPEWLSKKMADY 405 (408)
Q Consensus 393 ~~p~~~~~~~~~~ 405 (408)
.+|..+.+.+...
T Consensus 95 ~~~~~~~~lL~~~ 107 (115)
T PF12793_consen 95 FDQRQLAQLLQQT 107 (115)
T ss_pred hCHHHHHHHHHHH
Confidence 5555555555443
No 194
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=43.09 E-value=36 Score=25.33 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=33.9
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEecc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQ 356 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDq 356 (408)
....|.++||+.+|+|...+-..+.+|...|-+.-.-.+
T Consensus 20 ~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 20 NGPATAEEIAEELGISRSTVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 566889999999999999999999999999988655433
No 195
>PRK14574 hmsH outer membrane protein; Provisional
Probab=42.93 E-value=5.6e+02 Score=29.21 Aligned_cols=141 Identities=16% Similarity=0.083 Sum_probs=82.2
Q ss_pred HhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCc
Q psy7321 54 IVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIP 133 (408)
Q Consensus 54 ~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~ 133 (408)
...|.++.+.+|.-..++++....|+...++. . .-++...|+.|...+...+|..++..+-
T Consensus 294 ~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~------------P-------~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 294 ARIDRLGALLVRHQTADLIKEYEAMEAEGYKM------------P-------DYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC------------C-------HHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 34477778888886676666655555322110 1 1234556788888888888888888763
Q ss_pred cccccc-cCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcc-cc---c------cCCcHHHHHHHHHHHHHHHHHHHH
Q psy7321 134 LETGQK-QYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL-LQ---A------ETKDETLQVHYKVCYARVLDYRRK 202 (408)
Q Consensus 134 ~Et~~~-~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~-~~---~------~~~~~~lk~~y~~~~a~i~~~~r~ 202 (408)
-+.+.. ..++ -++......==|++.+.+..|..++++... .. . ...+++. ..++...+.++...++
T Consensus 355 ~~~~~~~~~~~--~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~-~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 355 YSDGKTFRNSD--DLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW-IEGQTLLVQSLVALND 431 (822)
T ss_pred hccccccCCCc--chHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH-HHHHHHHHHHHHHcCC
Confidence 322100 0011 112122334456778888888888777653 11 0 1122232 2666677887888888
Q ss_pred HHHHHHHHHHHhcC
Q psy7321 203 FIEAAQRYSELSYK 216 (408)
Q Consensus 203 f~eAa~~y~e~~~t 216 (408)
+-+|=+.+.++...
T Consensus 432 l~~Ae~~le~l~~~ 445 (822)
T PRK14574 432 LPTAQKKLEDLSST 445 (822)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877654
No 196
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=41.39 E-value=61 Score=29.87 Aligned_cols=45 Identities=9% Similarity=-0.069 Sum_probs=38.0
Q ss_pred HHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEecc
Q psy7321 312 LSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQ 356 (408)
Q Consensus 312 ~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDq 356 (408)
..+.+-+...|.+++|+.||+|+.-++.+++.+...|.+...++-
T Consensus 169 ~~~~~g~~g~s~~eIa~~l~iS~~Tv~~~~~~~~~~~~~~~~~~~ 213 (225)
T PRK10046 169 KLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVH 213 (225)
T ss_pred HHHHcCCCCcCHHHHHHHhCccHHHHHHHHHHHHhCCeEEEEeec
Confidence 344555666889999999999999999999999999999877653
No 197
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=40.74 E-value=58 Score=22.85 Aligned_cols=30 Identities=17% Similarity=0.410 Sum_probs=22.8
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
.++...+..++|+.+|+|+..+...+.+..
T Consensus 22 ~~~~g~s~~eIa~~l~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 22 RYFQGMSYAEIAEILGISESTVKRRLRRAR 51 (54)
T ss_dssp HHTS---HHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 478999999999999999999999887653
No 198
>PF13730 HTH_36: Helix-turn-helix domain
Probab=40.12 E-value=45 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=26.5
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHHHhcCce
Q psy7321 322 SFPELGALLQISAAKAEKIASHMICEGRM 350 (408)
Q Consensus 322 tl~~La~lLgls~e~~E~~ls~mI~~grl 350 (408)
+.+.||+.+|++..-+.+.+.+++..|-|
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 78999999999999999999999988854
No 199
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=39.85 E-value=63 Score=23.01 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=32.1
Q ss_pred HHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 307 TEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 307 iEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
.+.-+.+..+.=.+.++..||..||+|..-+-+.+..++.
T Consensus 6 ~d~lll~L~~LR~~~~~~~La~~FgIs~stvsri~~~~~~ 45 (53)
T PF13613_consen 6 EDQLLLTLMYLRLNLTFQDLAYRFGISQSTVSRIFHEWIP 45 (53)
T ss_pred HHHHHHHHHHHHcCCcHhHHhhheeecHHHHHHHHHHHHH
Confidence 3445566667788999999999999999998888877653
No 200
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=39.84 E-value=57 Score=31.34 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=36.6
Q ss_pred HHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCce
Q psy7321 308 EHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRM 350 (408)
Q Consensus 308 EhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl 350 (408)
..-|+.+-+-...+++++||+.||+|++-+-+-+..|-.+|.+
T Consensus 7 ~~~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l 49 (256)
T PRK10434 7 QAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTV 49 (256)
T ss_pred HHHHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 3445555566889999999999999999999999999999965
No 201
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=39.41 E-value=1.2e+02 Score=33.25 Aligned_cols=89 Identities=10% Similarity=0.094 Sum_probs=41.3
Q ss_pred HHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHH
Q psy7321 112 LALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKV 191 (408)
Q Consensus 112 LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~ 191 (408)
+.+.|.+.|++++|.+++.+++... -..+|-..+..|-..+++..|+....+...... .+ ...|.
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~~p---------~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p--~~----~~~y~ 532 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPFKP---------TVNMWAALLTACRIHKNLELGRLAAEKLYGMGP--EK----LNNYV 532 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC--CC----CcchH
Confidence 3444555555555555554433211 112344455555555555555555444322110 00 11244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 192 CYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 192 ~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+++.+|...+++.+|.+.+.+.-.
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 555555555666666666655543
No 202
>KOG1125|consensus
Probab=39.13 E-value=3.2e+02 Score=29.56 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
+..-|+-+|.-.|+|+.|.++++...-.- +..+ -+|-+.---.---+....|-..++||..+.. .=.+.
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~-----Pnd~--~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP----~yVR~ 500 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVK-----PNDY--LLWNRLGATLANGNRSEEAISAYNRALQLQP----GYVRV 500 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcC-----CchH--HHHHHhhHHhcCCcccHHHHHHHHHHHhcCC----Ceeee
Confidence 34458999999999999999987642111 1122 2233222222233455666666888876542 23345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCc
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELSYKP---------IIDEAERITALKSALICTILASAGQQRSRMLATLFKDE 255 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~---------~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~ 255 (408)
+| -+|.-++..+.|.||+++|.++..-. ....+...++|+.++.| ..|+|+|.....+.
T Consensus 501 Ry--NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~-------~~~~D~l~~a~~~~ 568 (579)
T KOG1125|consen 501 RY--NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSA-------MNRSDLLQEAAPSR 568 (579)
T ss_pred eh--hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHH-------cCCchHHHHhcccc
Confidence 54 35666788899999999999987531 11123456788754443 46777666555543
No 203
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=38.97 E-value=2e+02 Score=24.11 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHHHHHH
Q psy7321 67 ILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQ 110 (408)
Q Consensus 67 iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~ 110 (408)
++.++..++++--+...|......|+.-..|++.+.+=...|+.
T Consensus 54 vl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 54 VLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKH 97 (117)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 66677777776545566778888999999999988766655543
No 204
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=38.65 E-value=59 Score=31.80 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=35.0
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccC
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQI 357 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv 357 (408)
-.|++.+||+.+++|.+++-..+......+.|+|++|..
T Consensus 129 G~vsi~eLa~~~~Lp~efl~~~li~~~lg~~I~g~~d~~ 167 (272)
T PF09743_consen 129 GQVSISELAKQYDLPSEFLKEELISKRLGKIIKGRLDGD 167 (272)
T ss_pred CeEeHHHHHHhcCCcHHHHHHHHhhhhcCcceeEEEeCC
Confidence 678999999999999999996666778888999999988
No 205
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=38.46 E-value=1.5e+02 Score=29.22 Aligned_cols=78 Identities=15% Similarity=0.056 Sum_probs=55.3
Q ss_pred hhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHH
Q psy7321 93 KVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINR 172 (408)
Q Consensus 93 ~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~K 172 (408)
||++-.-+|++.-...-..|++.+...|+++.+...++++- ++ +-+-=..|...|+.|+..++...|...+++
T Consensus 140 WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li-~~------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 140 WVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLI-EL------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-hc------CccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 34433344444444444559999999999999999988863 22 112235788899999999999999998888
Q ss_pred hcccc
Q psy7321 173 ASLLQ 177 (408)
Q Consensus 173 a~~~~ 177 (408)
.+...
T Consensus 213 l~~~~ 217 (280)
T COG3629 213 LKKTL 217 (280)
T ss_pred HHHHh
Confidence 87643
No 206
>KOG2034|consensus
Probab=38.28 E-value=3.2e+02 Score=31.13 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=40.5
Q ss_pred HHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 153 IARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 153 i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+-|.||..|+|.+|-.+.+ ..|+-.-.-+.-+|-++..+++|..||..|-+++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar---------~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIAR---------TRPDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHHHhcchHHHHHHhcc---------CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 5789999999999976431 12333333345679999999999999999999854
No 207
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=37.88 E-value=56 Score=25.37 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=31.7
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
..+++.+||+.+|+|...+-+.+..|...|-+..
T Consensus 19 ~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~ 52 (91)
T smart00346 19 GGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQ 52 (91)
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeee
Confidence 3699999999999999999999999999999865
No 208
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=37.73 E-value=7.2e+02 Score=29.00 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHHH
Q psy7321 193 YARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLD 272 (408)
Q Consensus 193 ~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~~ 272 (408)
..+++...++|.+|-..|-++......++.. ...|.. +++..+.. .. +..+++ +.++.-| .+.-.+.+
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~-~~~L~~-ay~q~l~~-----~~-a~al~~-~~lk~d~---~l~~ala~ 255 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEARQQNTLSAAE-RRQWFD-VLLAGQLD-----DR-LLALQS-QGIFTDP---QSRITYAT 255 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHhcCCCCHHH-HHHHHH-HHHHhhCH-----HH-HHHHhc-hhcccCH---HHHHHHHH
Confidence 3677777888999999998888765444333 333433 44443322 22 233344 4333222 22223333
Q ss_pred hhcCcchHHHHHHHhc
Q psy7321 273 RIIRKSELQDFAALLK 288 (408)
Q Consensus 273 ~ii~~~~l~~F~~~L~ 288 (408)
.++..++..++...|.
T Consensus 256 ~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 256 ALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHCCCHHHHHHHHH
Confidence 3344456666665554
No 209
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=37.71 E-value=2.6e+02 Score=23.82 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=38.0
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
..++..+||+.+|+++.-+=..+.+|...|-+.-.-|..|+-
T Consensus 45 ~~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR 86 (144)
T PRK03573 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRR 86 (144)
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcC
Confidence 357889999999999999999999999999999888877774
No 210
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=37.66 E-value=64 Score=28.99 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=37.6
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhH
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSW 372 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W 372 (408)
.+|-++||..+|++++.+=+.+.+|-.+|-|. ...|.|...+++.|.++
T Consensus 149 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~----~~~~~i~I~d~~~L~~~ 197 (202)
T PRK13918 149 YATHDELAAAVGSVRETVTKVIGELSREGYIR----SGYGKIQLLDLKGLEEL 197 (202)
T ss_pred cCCHHHHHHHhCccHHHHHHHHHHHHHCCCEE----cCCCEEEEECHHHHHHH
Confidence 57889999999999999999999999999885 23344555444445444
No 211
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=36.77 E-value=16 Score=34.23 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHHHhhcCcch-HHHHHHHhchhhhh
Q psy7321 224 RITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSE-LQDFAALLKPHQKA 293 (408)
Q Consensus 224 ~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~~~ii~~~~-l~~F~~~L~~h~~~ 293 (408)
-...|+.||+.++|+|.+|.-.|+... ++..+..-|.+.-...-.-++-|+|+= ...|+.+|-.|...
T Consensus 109 p~~~Lk~AIv~TLL~~~Dp~~vDl~Sd--~~i~l~g~PFLygqVlD~~g~~I~~~wRA~ryAdYLi~n~Lq 177 (204)
T PF11873_consen 109 PKAHLKQAIVTTLLTPDDPSSVDLFSD--KDIPLSGEPFLYGQVLDQDGQPIRWEWRANRYADYLIQNKLQ 177 (204)
T ss_pred HHHHHHHHHHHHhcCCCCCccccCccC--CCCccCCCceehheeecCCCCeEeeHhHHHHHHHHHHHhhhh
Confidence 467899999999999999999887553 344456677654333333345677753 46788888666543
No 212
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=36.56 E-value=2.2e+02 Score=27.68 Aligned_cols=94 Identities=15% Similarity=0.040 Sum_probs=69.9
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHY 189 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y 189 (408)
..++.-+-..|+=+.++.+++.+-... -++.+ +...+.+..+..+|+..|...+.|+-.+- .+||+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~----~~d~~---ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~---- 136 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY----PKDRE---LLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEA---- 136 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC----cccHH---HHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhh----
Confidence 567788888888888888888755433 23332 22238899999999999999999997643 357765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+...+-.|+..++|-+|=..|.....-
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 345688888899999999999888753
No 213
>KOG1586|consensus
Probab=36.39 E-value=4.1e+02 Score=25.81 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=38.9
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHH
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAF 169 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~ 169 (408)
..|+++.+.|...+|+..+.+.- -+ +++.++.+-++..-.-+.+|-..|.+.+|-.+
T Consensus 59 kaA~~h~k~~skhDaat~YveA~-~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~ 115 (288)
T KOG1586|consen 59 KAADLHLKAGSKHDAATTYVEAA-NC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKH 115 (288)
T ss_pred HHHHHHHhcCCchhHHHHHHHHH-HH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 35777888888777777776632 23 67777777777666677777777777776544
No 214
>PRK04841 transcriptional regulator MalT; Provisional
Probab=35.49 E-value=2.1e+02 Score=32.20 Aligned_cols=106 Identities=12% Similarity=-0.011 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc--HHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD--ETLQ 186 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~--~~lk 186 (408)
...++..+...|++++|...+....... ...-+.............+++..||+..|..+..++-......+. ....
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~-~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMA-RQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4567788888999999888877653222 211222334556667788999999999999998777543321111 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.......+.++...+++-+|...+.+...
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 11233567777777888888877776543
No 215
>PRK12370 invasion protein regulator; Provisional
Probab=35.38 E-value=3.6e+02 Score=28.77 Aligned_cols=97 Identities=12% Similarity=-0.036 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
......+|.++...|++++|...+.... +. .+. -.+.+.....++...|++..|...+.++..... .++..
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~l-----~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P--~~~~~ 408 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQAN-LL-----SPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDP--TRAAA 408 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH-Hh-----CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CChhh
Confidence 3344567888888999999988887642 11 111 123455668888888999999999888865432 22221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+ ..+..+...++|-+|-..|.++..
T Consensus 409 --~~--~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 409 --GI--TKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred --HH--HHHHHHHhccCHHHHHHHHHHHHH
Confidence 11 123334445778788888777654
No 216
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=35.18 E-value=44 Score=27.05 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=22.5
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIAS 342 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls 342 (408)
-+.+|.+.+|.-||+|++++|+++.
T Consensus 21 ~~~ls~~~ia~dL~~s~~~le~vL~ 45 (89)
T PF10078_consen 21 LSGLSLEQIAADLGTSPEHLEQVLN 45 (89)
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3678999999999999999999874
No 217
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=34.78 E-value=87 Score=22.94 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=29.9
Q ss_pred cccC-ChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 318 YNNI-SFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 318 Ys~I-tl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
=+.+ +...||+.+|+|..-+-+-+..+..+|.+.-
T Consensus 21 g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~ 56 (64)
T PF00392_consen 21 GDRLPSERELAERYGVSRTTVREALRRLEAEGLIER 56 (64)
T ss_dssp TSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred CCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEE
Confidence 3688 8999999999999999999999999998864
No 218
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=34.74 E-value=1e+02 Score=20.96 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=25.2
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
++...+..++|+.+|+|...+...+.++.
T Consensus 15 ~~~g~s~~eia~~l~is~~tv~~~~~~~~ 43 (58)
T smart00421 15 LAEGLTNKEIAERLGISEKTVKTHLSNIM 43 (58)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35678999999999999999999988764
No 219
>PF12964 DUF3853: Protein of unknown function (DUF3853); InterPro: IPR024363 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=34.64 E-value=28 Score=28.53 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=35.5
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 322 SFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 322 tl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
.+..||.+||.|..- ++++-.+|.|+--|=|+.+.|+|+..
T Consensus 47 G~~GlAklfgcSv~T----a~RiK~sG~id~AI~Q~Gr~IivD~~ 87 (96)
T PF12964_consen 47 GLKGLAKLFGCSVPT----ANRIKKSGKIDPAITQIGRKIIVDAD 87 (96)
T ss_pred hHHHHHHHhCCCchh----HHHHHhcCCccHHHHHcCCEEEEeHH
Confidence 578899999999864 57788889999999999999999864
No 220
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=34.60 E-value=79 Score=21.71 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=25.0
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
++...+..++|+.+|+|+..+...+.++.
T Consensus 12 ~~~~~s~~eia~~l~~s~~tv~~~~~~~~ 40 (57)
T cd06170 12 LAEGKTNKEIADILGISEKTVKTHLRNIM 40 (57)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35778999999999999999999887764
No 221
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=34.54 E-value=76 Score=23.90 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=27.0
Q ss_pred CChHHHHHHhCCC-HHHHHHHHHHHHhcCceE
Q psy7321 321 ISFPELGALLQIS-AAKAEKIASHMICEGRMN 351 (408)
Q Consensus 321 Itl~~La~lLgls-~e~~E~~ls~mI~~grl~ 351 (408)
-|+.+||+.||++ +.-+-..+..|...|.|.
T Consensus 26 Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 26 PTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp --HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 5899999999995 999999999999999875
No 222
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=34.39 E-value=1.1e+02 Score=27.39 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhc---CCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccc
Q psy7321 63 ISRQILTDVSTHLV---SQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQK 139 (408)
Q Consensus 63 ~~r~iv~~~~~~l~---~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~ 139 (408)
++..+|..+++.+. ...+..-.+.++.+|+.+.|+ ...+..--+-++-..|+|.+|..+|.++.-.+ ..
T Consensus 5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~-------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~-~~ 76 (153)
T TIGR02561 5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPN-------LKELDMFDGWLLIARGNYDEAARILRELLSSA-GA 76 (153)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------ccccchhHHHHHHHcCCHHHHHHHHHhhhccC-CC
Q ss_pred cCCchhHHHHHHHHHH
Q psy7321 140 QYSVDYKLQTYMKIAR 155 (408)
Q Consensus 140 ~~~~~~Kle~~L~i~R 155 (408)
.---+.-+-+||...+
T Consensus 77 ~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 77 PPYGKALLALCLNAKG 92 (153)
T ss_pred chHHHHHHHHHHHhcC
No 223
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=34.26 E-value=53 Score=30.00 Aligned_cols=44 Identities=11% Similarity=-0.070 Sum_probs=37.1
Q ss_pred HHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCce
Q psy7321 307 TEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRM 350 (408)
Q Consensus 307 iEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl 350 (408)
++..|+.+-+-...++.++|++.||+|+.-+-+-+..|-.+|.+
T Consensus 8 R~~~Il~~l~~~~~~~~~~La~~~~vS~~TiRRDl~~L~~~g~~ 51 (185)
T PRK04424 8 RQKALQELIEENPFITDEELAEKFGVSIQTIRLDRMELGIPELR 51 (185)
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHCcCHHHHHHHHHHHhcchHH
Confidence 34455555566889999999999999999999999999998876
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.16 E-value=4.7e+02 Score=25.83 Aligned_cols=109 Identities=14% Similarity=0.072 Sum_probs=70.5
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhh---hcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYL---EDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L---~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
.|+.+|...|++..|...+..-. +--+ .+.++++-..+... ...+..+++..++++-... +.+.+.
T Consensus 161 ~Lg~~ym~~~~~~~A~~AY~~A~-----rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D----~~~ira 229 (287)
T COG4235 161 LLGRAYMALGRASDALLAYRNAL-----RLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD----PANIRA 229 (287)
T ss_pred HHHHHHHHhcchhHHHHHHHHHH-----HhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC----CccHHH
Confidence 36899999999999999987632 2212 23444443333332 3466777788888886543 234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALI 233 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~ 233 (408)
.| +.|.-+..+++|.+|...+....+.-+ .++.|...+...+-
T Consensus 230 l~--lLA~~afe~g~~~~A~~~Wq~lL~~lp-~~~~rr~~ie~~ia 272 (287)
T COG4235 230 LS--LLAFAAFEQGDYAEAAAAWQMLLDLLP-ADDPRRSLIERSIA 272 (287)
T ss_pred HH--HHHHHHHHcccHHHHHHHHHHHHhcCC-CCCchHHHHHHHHH
Confidence 54 567777889999999999998887522 23356666654443
No 225
>KOG4318|consensus
Probab=34.07 E-value=4.9e+02 Score=29.96 Aligned_cols=108 Identities=22% Similarity=0.118 Sum_probs=68.6
Q ss_pred HHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHH
Q psy7321 112 LALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKV 191 (408)
Q Consensus 112 LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~ 191 (408)
|=..|-..|+|+.|-....+++| .....++-....|.|...+..|.+++..--.|++.........+ .|+.
T Consensus 713 LL~sy~~~g~~erA~glwnK~QV------~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt---~~~~ 783 (1088)
T KOG4318|consen 713 LLQSYLEEGRIERASGLWNKDQV------SKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTT---CYYE 783 (1088)
T ss_pred HHHHHHhhhHHHHHHhHHhhCcC------CcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccch---Hhhh
Confidence 56688999999999999999884 23456788888999999999999999998888875432111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHH
Q psy7321 192 CYARVLDYRRKFIEAAQRYSELSYK--PIIDEAERITALK 229 (408)
Q Consensus 192 ~~a~i~~~~r~f~eAa~~y~e~~~t--~~i~~~e~~~~L~ 229 (408)
=+|. ...+.++++||+...+-..+ +.++.+.....++
T Consensus 784 ~~a~-~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k 822 (1088)
T KOG4318|consen 784 GYAF-FATQTEQKKAAKKCFERLEEQLTVSTADELSDFLK 822 (1088)
T ss_pred hhHH-HHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 1122 23356777666554443332 3344455544444
No 226
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=33.82 E-value=2.2e+02 Score=31.32 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhhccHHH----HHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCC
Q psy7321 106 ASIRQHLALIYEREENWRD----AANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK 181 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~e----Aa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~ 181 (408)
......||..|...|++.+ |...+.... +. .+. -.+.+.....+++..+++..|..++.++-... ..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al-~l-----~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~ 316 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHAL-QF-----NSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PD 316 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH-hh-----CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC
Confidence 3455668888888888876 555555432 11 111 24667777899999999999999988886532 23
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 182 DETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 182 ~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
++... ...+.++...++|-+|...|..+...
T Consensus 317 ~~~a~----~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 317 LPYVR----AMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred CHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44332 23577888889999999999887754
No 227
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=33.74 E-value=50 Score=30.70 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.7
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
.++++.+||+.||+|+.-+.+.|.+..
T Consensus 177 R~~~l~dLA~~lGISkst~~ehLRrAe 203 (215)
T COG3413 177 RRVSLKDLAKELGISKSTLSEHLRRAE 203 (215)
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 689999999999999998888887654
No 228
>KOG2002|consensus
Probab=33.70 E-value=45 Score=37.90 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=66.9
Q ss_pred HHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHH
Q psy7321 114 LIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCY 193 (408)
Q Consensus 114 ~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~ 193 (408)
-++...|.|.+|..++..++-.+. .-.++|+.++-+|++.+.|..|-....++...+.+.++.++. .|.
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~-------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl----~~L 722 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATS-------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL----HYL 722 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHh-------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH----HHH
Confidence 345566899999999999875441 234789999999999999999988887777666555565553 367
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy7321 194 ARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 194 a~i~~~~r~f~eAa~~y~e~~ 214 (408)
||.+...+.|.+|-..-.-..
T Consensus 723 ara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 998888888777666555443
No 229
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=33.50 E-value=2.1e+02 Score=31.84 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHH
Q psy7321 26 KYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQV 105 (408)
Q Consensus 26 ~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~ 105 (408)
.|-.++++++...-+ ...+...++.++.|.|++---|.|+..+.++-+..+|... + .|.=|
T Consensus 517 ~~p~Lveelvp~~~~---l~~l~~VLq~LL~E~VsIRdl~tIlEtL~d~~~~~~d~~~---L-------------tE~VR 577 (694)
T PRK12792 517 EYKRLIDDICPSQIS---YSGLQAVLKLLLAERVSIRNLHLILEAVAEIAPHARRAEQ---I-------------AEHVR 577 (694)
T ss_pred hChHHHHHhcccCCC---HHHHHHHHHHHHHcCCccccHHHHHHHHHHHhcccCCHHH---H-------------HHHHH
Confidence 366677775443332 5678999999999999999999999999999876655322 1 23348
Q ss_pred HHHHHHHHHHHHhh
Q psy7321 106 ASIRQHLALIYERE 119 (408)
Q Consensus 106 a~l~~~LA~~~e~~ 119 (408)
.+|.+.+.+-|...
T Consensus 578 ~~L~r~I~~~~~~~ 591 (694)
T PRK12792 578 MRIAQQICGDLSDN 591 (694)
T ss_pred HHHHHHHHHHhccC
Confidence 88888888877653
No 230
>KOG1585|consensus
Probab=33.28 E-value=4.7e+02 Score=25.59 Aligned_cols=69 Identities=23% Similarity=0.222 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH--------------------HHHHHHHHHHHHHHHHH
Q psy7321 145 YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV--------------------HYKVCYARVLDYRRKFI 204 (408)
Q Consensus 145 ~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~--------------------~y~~~~a~i~~~~r~f~ 204 (408)
+-++++-+-.-+|.+.|-..-|...+.||.....++ +|+.-+ .++--.++++.--++|.
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 455666666667777776666666666665443322 222222 23333466666677888
Q ss_pred HHHHHHHHHh
Q psy7321 205 EAAQRYSELS 214 (408)
Q Consensus 205 eAa~~y~e~~ 214 (408)
||+..+..-.
T Consensus 168 Eaa~a~lKe~ 177 (308)
T KOG1585|consen 168 EAATAFLKEG 177 (308)
T ss_pred HHHHHHHHhh
Confidence 8888876543
No 231
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=32.97 E-value=1.8e+02 Score=26.60 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=33.4
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEec
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akID 355 (408)
..++..+||+.+|+|+.-+-+.+.+|...|-+.-.-+
T Consensus 156 g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~ 192 (203)
T TIGR01884 156 GEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGR 192 (203)
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 5699999999999999999999999999999876544
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.82 E-value=74 Score=30.98 Aligned_cols=100 Identities=10% Similarity=0.026 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcc-ccccCCcHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL-LQAETKDETLQV 187 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~-~~~~~~~~~lk~ 187 (408)
-...|--+...|||.+|...+..-. .- +-.-+-..-..+||-+ .++..+||..|..+..+... ......-+|-.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi-~~-YP~s~~~~nA~yWLGe--~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFI-KK-YPNSTYTPNAYYWLGE--SLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-Hc-CCCCcccchhHHHHHH--HHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 4566777788899999999888732 12 1111223357788865 56678899999877666643 333334567667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+. |...-..++--+||..|.++...
T Consensus 220 Kl----g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KL----GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HH----HHHHHHhcCHHHHHHHHHHHHHH
Confidence 75 44445557788999999998876
No 233
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=32.79 E-value=3.9e+02 Score=24.43 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=33.7
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
....+|..+||+.+|+++.-+=+.+.+|...|-|.-.
T Consensus 12 ~~~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~ 48 (203)
T TIGR02702 12 KQGQATAAALAEALAISPQAVRRHLKDLETEGLIEYE 48 (203)
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEe
Confidence 3467999999999999999999999999999999765
No 234
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=32.05 E-value=4.1e+02 Score=25.67 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHhhccchh----hchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCcc--chHHHHHHHHHHHHHHHH
Q psy7321 43 CTECLNLFVEAIVNENVSL----VISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRV--ISFEEQVASIRQHLALIY 116 (408)
Q Consensus 43 ~~~~l~~~~~~~~~e~v~~----~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~--i~~E~e~a~l~~~LA~~~ 116 (408)
....|.-++-+++.+.... .....++..+++.++..|. --++...++|++--+. ..|. -.-.=+ .|=+-.
T Consensus 114 F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~~--~l~Ivv~C~RKtE~~~W~~LF~-~lg~P~-dLf~~c 189 (258)
T PF07064_consen 114 FSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFPE--YLEIVVNCARKTEVRYWPYLFD-YLGSPR-DLFEEC 189 (258)
T ss_pred cHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCcc--hHHHHHHHHHhhHHHHHHHHHH-hcCCHH-HHHHHH
Confidence 3456667777777666554 4556788888888888664 2345566666653211 1111 011111 233334
Q ss_pred HhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHH
Q psy7321 117 EREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFIN 171 (408)
Q Consensus 117 e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~ 171 (408)
.+.|+++.|+..|.=++-..+...+.+++-.+..++.++..++.++|.-|...+.
T Consensus 190 l~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~R 244 (258)
T PF07064_consen 190 LENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVR 244 (258)
T ss_pred HHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4588999999887765421112222345567888899999999999999988753
No 235
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=31.99 E-value=90 Score=19.20 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHhc
Q psy7321 148 QTYMKIARLYLEDEDPVQAEAFINRAS 174 (408)
Q Consensus 148 e~~L~i~RL~L~~~D~~~A~~~i~Ka~ 174 (408)
+.|..+...|+..+++..|..+..++-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 456666677777777777777666664
No 236
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=31.61 E-value=2e+02 Score=33.13 Aligned_cols=97 Identities=10% Similarity=-0.028 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
....+..|...|-..|++++|..++.+- ++. . ...+++++-..-+++..+++..+-.. ++-..+....+|.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~-l~~-----~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEH-LKE-----H-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHh-----C-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 4556678899999999999999998852 322 1 22345555444599999988777665 4444444456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRY 210 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y 210 (408)
+.-.|+.|++.+...+.-...-|.||
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Y 126 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAY 126 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 88888888888877773333333333
No 237
>PRK11050 manganese transport regulator MntR; Provisional
Probab=31.61 E-value=2.1e+02 Score=25.02 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=32.0
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
..++..+||+.||++...+-..+.+|...|-|.-+
T Consensus 50 ~~~t~~eLA~~l~is~stVsr~l~~Le~~GlI~r~ 84 (152)
T PRK11050 50 GEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMR 84 (152)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 57899999999999999999999999999987654
No 238
>KOG2376|consensus
Probab=31.52 E-value=6.6e+02 Score=27.51 Aligned_cols=106 Identities=19% Similarity=0.011 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCcccccc-ccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc--ccCCcHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQ-KQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ--AETKDET 184 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~-~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~--~~~~~~~ 184 (408)
+-...|.++...|+|+.|+++|.... ++-- ...+..++=.+.--++-||...+|-..|......|-.-. ...+...
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~-~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFL-ESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh-hhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 33556888999999999999999655 3311 112334555566667778888888888887776664321 1112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+..-+.. .+.+..-.++=.+|.+.|.+++.
T Consensus 457 l~~~~~~-aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 457 LLSLMRE-AAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred HHhHHHH-HhHHHHhcCchHHHHHHHHHHHH
Confidence 4333322 23333334788899999999997
No 239
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=31.43 E-value=2.1e+02 Score=31.95 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHH
Q psy7321 26 KYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQV 105 (408)
Q Consensus 26 ~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~ 105 (408)
.|-.++++++...-+ ...+...++.++.|.|++---|.|+..+.+|-+..+|... + .|.=|
T Consensus 519 ~~p~LVeElvp~~l~---l~~Iq~VLq~LL~E~VSIRdL~tIlEaLad~a~~~kD~~~---L-------------tE~VR 579 (697)
T PRK06012 519 EYPKLVEELVPKVLS---LGTLQKVLQNLLKERVSIRDLRTILETLADYAPITKDPDE---L-------------TEHVR 579 (697)
T ss_pred hChHHHHHhccccCC---HHHHHHHHHHHHhCCCccccHHHHHHHHHHHhccCCCHHH---H-------------HHHHH
Confidence 366677775433322 5678999999999999999999999999999876554321 1 23337
Q ss_pred HHHHHHHHHHHHhh
Q psy7321 106 ASIRQHLALIYERE 119 (408)
Q Consensus 106 a~l~~~LA~~~e~~ 119 (408)
.+|.+.++.-|...
T Consensus 580 ~aL~RqI~~~~~~~ 593 (697)
T PRK06012 580 QRLGRQIVQQYKGE 593 (697)
T ss_pred HHHHHHHHHHhcCC
Confidence 88888887777643
No 240
>PLN03077 Protein ECB2; Provisional
Probab=30.94 E-value=2.2e+02 Score=32.17 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=40.9
Q ss_pred HHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhc
Q psy7321 113 ALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRAS 174 (408)
Q Consensus 113 A~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~ 174 (408)
-..+...|++++|.+++..+.-+- +..-.++.|-..+.++-..|++..|..++++..
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKY-----SITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 355778888888888888874221 122235778888888888888888888887753
No 241
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=30.93 E-value=6.6e+02 Score=27.49 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=38.5
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhc
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRAS 174 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~ 174 (408)
..|.+.|.+.|++++|.+++.++.- + -+..|-..+.-|...|+...|....++..
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~----~------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPR----K------NLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC----C------CeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4688888889999999988887642 1 12346666777777777777777666543
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=30.82 E-value=83 Score=21.06 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 148 QTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 148 e~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
+.++...+.|...|++.+|...++++-..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677789999999999999998888653
No 243
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.60 E-value=7.2e+02 Score=26.83 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=69.6
Q ss_pred hhcCccc---hHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHH
Q psy7321 93 KVQPRVI---SFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAF 169 (408)
Q Consensus 93 ~i~~~~i---~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~ 169 (408)
.+..|+| .++.+...+...+..+.....|..+++..+..+--.. .+-.+.-..+.--+..+..++...||.+|-..
T Consensus 463 ~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~-nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~ 541 (569)
T PRK04778 463 ELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYA-NRYRSDNEEVAEALNEAERLFREYDYKAALEI 541 (569)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4445776 3455778888889999999999999999988654443 34345566788888899888899999999887
Q ss_pred HHHhccccccCCcHHHHHHH
Q psy7321 170 INRASLLQAETKDETLQVHY 189 (408)
Q Consensus 170 i~Ka~~~~~~~~~~~lk~~y 189 (408)
+..|-..+.+|.-..+.-.|
T Consensus 542 ~~~alE~vePG~~~ri~~~y 561 (569)
T PRK04778 542 IATALEKVEPGVTKRIEDSY 561 (569)
T ss_pred HHHHHHhhCCcHHHHHHHHH
Confidence 77776655555444444333
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=30.47 E-value=3.8e+02 Score=23.59 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhc
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRAS 174 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~ 174 (408)
.-|.-..+.|+|.+|.+.|..|.---.++..+ -...|.++-.|...++++.|...+.|=-
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya----~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYA----EQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34566678899999999999964211233333 3555677999999999999988876654
No 245
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.38 E-value=62 Score=26.14 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.7
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIAS 342 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls 342 (408)
-.+.|.+.+|..||+++.++|+++.
T Consensus 21 l~~LS~~~iA~~Ln~t~~~lekil~ 45 (97)
T COG4367 21 LCPLSDEEIATALNWTEVKLEKILQ 45 (97)
T ss_pred hccccHHHHHHHhCCCHHHHHHHHH
Confidence 5678999999999999999999885
No 246
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=30.28 E-value=2e+02 Score=25.19 Aligned_cols=71 Identities=10% Similarity=-0.009 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 143 VDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 143 ~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.......+......+...+|+..|..+.+++-....+ .++ ....+...|.++...++|.+|...|.+....
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-PND--RSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-cch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999888643211 111 1234556788888899999999999988764
No 247
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=30.17 E-value=70 Score=24.43 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=26.1
Q ss_pred cccCChHHHHH-HhCCCHHHHHHHHHHHHhcCceE
Q psy7321 318 YNNISFPELGA-LLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 318 Ys~Itl~~La~-lLgls~e~~E~~ls~mI~~grl~ 351 (408)
=+..-|.++.. ..+..+-++-+.+..||.+|++.
T Consensus 17 KskfYfkD~~k~~pd~k~R~vKKi~~~LV~Eg~l~ 51 (67)
T PF08679_consen 17 KSKFYFKDFYKAFPDAKPREVKKIVNELVNEGKLE 51 (67)
T ss_dssp SS-EEHHHHHHH-TTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCceeHHHHHHHCCCcCHHHHHHHHHHHHhhCeEE
Confidence 34455788888 66788999999999999999884
No 248
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=29.53 E-value=62 Score=24.07 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=18.3
Q ss_pred hCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 330 LQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 330 Lgls~e~~E~~ls~mI~~grl~ak 353 (408)
.+.+.++++.++.++|.+|+|.+.
T Consensus 31 ~~~s~~eL~~fL~~lv~e~~L~~~ 54 (60)
T PF08672_consen 31 YDISLEELQEFLDRLVEEGKLECS 54 (60)
T ss_dssp TT--HHHHHHHHHHHHHTTSEE--
T ss_pred CCCCHHHHHHHHHHHHHCCcEEec
Confidence 456789999999999999999874
No 249
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=29.40 E-value=2.9e+02 Score=30.66 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHH
Q psy7321 26 KYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQV 105 (408)
Q Consensus 26 ~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~ 105 (408)
.|-.+++++....-+ ...+...++.++.|.|++---|.|+..+.++-+..+|... + .|.=|
T Consensus 503 ~~p~lveel~p~~~~---l~~l~~VLq~LL~E~VsIRdl~tIlE~l~d~~~~~kd~~~---L-------------tE~VR 563 (678)
T TIGR01398 503 EYPKLVEELIPDKVP---LGTIQKVLQLLLRERVSIRNLPTILETLADYAPITKDPDL---L-------------VEHVR 563 (678)
T ss_pred HChHHHHHhccCCCC---HHHHHHHHHHHHhcCCccccHHHHHHHHHHHhccCCCHHH---H-------------HHHHH
Confidence 466777777543222 5678999999999999999999999999999876654322 1 23337
Q ss_pred HHHHHHHHHHHHhh
Q psy7321 106 ASIRQHLALIYERE 119 (408)
Q Consensus 106 a~l~~~LA~~~e~~ 119 (408)
.+|.+.+.+-|...
T Consensus 564 ~~L~r~I~~~~~~~ 577 (678)
T TIGR01398 564 QRLGRQITQQYLDE 577 (678)
T ss_pred HHHHHHHHHHHhCC
Confidence 88888888777643
No 250
>KOG1058|consensus
Probab=29.38 E-value=2.4e+02 Score=31.67 Aligned_cols=113 Identities=9% Similarity=0.087 Sum_probs=67.0
Q ss_pred HHHhccCCchhhHHHHHHHHHHHhhCCCC--cchhHHHHHHHHHHhhccchhhch--HHHHHHHHHHhcCCCCcchhchH
Q psy7321 12 ALSSQAGSHKDQADKYRSILELILKNQDT--TTCTECLNLFVEAIVNENVSLVIS--RQILTDVSTHLVSQPDEVAKPVS 87 (408)
Q Consensus 12 ~~~~~~~~~~~~~~~y~~~l~~~~~~~~~--~~~~~~l~~~~~~~~~e~v~~~~~--r~iv~~~~~~l~~l~~~~~~~~~ 87 (408)
++....+...++.++|+.+|-+-++..+. ++.++...-.+=..++|.=+..++ =.+|+++++.++++-. .....+
T Consensus 360 e~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~-~ii~~l 438 (948)
T KOG1058|consen 360 EVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRA-SIIEKL 438 (948)
T ss_pred HHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHH-HHHHHH
Confidence 34555555677899999999888765432 223333333332233332222222 2367777777666553 335678
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHh
Q psy7321 88 HFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLV 130 (408)
Q Consensus 88 ~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~ 130 (408)
.+++..|+++||+- ..+ =.++++.|..+++..+.+...
T Consensus 439 ~~~~~~irS~ki~r----gal-wi~GeYce~~~~i~~~~k~i~ 476 (948)
T KOG1058|consen 439 LETFPQIRSSKICR----GAL-WILGEYCEGLSEIQSVIKIIR 476 (948)
T ss_pred HHhhhhhcccccch----hHH-HHHHHHHhhhHHHHHHHHHHH
Confidence 88999999999864 222 346777787777777666543
No 251
>PRK05910 type III secretion system protein; Validated
Probab=29.15 E-value=2.8e+02 Score=30.24 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHH
Q psy7321 26 KYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQV 105 (408)
Q Consensus 26 ~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~ 105 (408)
.|-.+++++....-+ ...+...++.++.|.|++---|.|+..+.++-+..+|... + .|.=|
T Consensus 411 ~~p~lVeelvp~~l~---l~~i~~VLq~LL~E~VsIRdl~tIlEaLad~~~~tkd~~~---L-------------tE~VR 471 (584)
T PRK05910 411 VAGISIEEIIPKKIS---ENSLVFLLRALVRERVSLHLFPKILEAIAVYGSQGKSSEE---L-------------VEKVR 471 (584)
T ss_pred hChHHHHHhcccCCC---HHHHHHHHHHHHhcCCccccHHHHHHHHHHHhccCCCHHH---H-------------HHHHH
Confidence 466777776543332 5788999999999999999999999999999877665322 1 23337
Q ss_pred HHHHHHHHHHHHhh
Q psy7321 106 ASIRQHLALIYERE 119 (408)
Q Consensus 106 a~l~~~LA~~~e~~ 119 (408)
.+|...+++-|...
T Consensus 472 ~~L~r~I~~~~~~~ 485 (584)
T PRK05910 472 KYLGKQIGRSLWNR 485 (584)
T ss_pred HHHHHHHHHHhhCC
Confidence 88878887777643
No 252
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=28.93 E-value=3.6e+02 Score=22.81 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=34.8
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCC
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQID 358 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~ 358 (408)
..+..+|++.||+|+..+-+.+..|...|-+..+-+...
T Consensus 30 ~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~ 68 (117)
T PRK10141 30 ELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKW 68 (117)
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCE
Confidence 588899999999999999999999999999988776443
No 253
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=28.81 E-value=1e+02 Score=29.49 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=36.4
Q ss_pred HHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 309 HNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 309 hNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
+-|..+-+--..|++++|+++||+|+.-+-+-|..+=.+|.+.-
T Consensus 8 ~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~R 51 (253)
T COG1349 8 QKILELLKEKGKVSVEELAELFGVSEMTIRRDLNELEEQGLLLR 51 (253)
T ss_pred HHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEEE
Confidence 33444444567899999999999999999999999999998753
No 254
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=28.57 E-value=1.2e+02 Score=29.16 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=35.7
Q ss_pred HHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 310 NLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 310 Ni~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
-|+.+-+-...++..+|++.||+|++-+-+.+..+-.+|.+.
T Consensus 9 ~Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~ 50 (252)
T PRK10906 9 AIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKIL 50 (252)
T ss_pred HHHHHHHHcCCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 344444567889999999999999999999999999999873
No 255
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=28.51 E-value=1.2e+02 Score=20.69 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.3
Q ss_pred hccccCChHHHHHHhCCCHHHH
Q psy7321 316 KLYNNISFPELGALLQISAAKA 337 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~ 337 (408)
+-|..+|+.++|+..|++..-+
T Consensus 12 ~G~~~~s~~~Ia~~~gvs~~~~ 33 (47)
T PF00440_consen 12 KGYEAVSIRDIARRAGVSKGSF 33 (47)
T ss_dssp HHTTTSSHHHHHHHHTSCHHHH
T ss_pred hCHHhCCHHHHHHHHccchhhH
Confidence 4699999999999999997654
No 256
>PRK12370 invasion protein regulator; Provisional
Probab=28.02 E-value=3.1e+02 Score=29.28 Aligned_cols=97 Identities=8% Similarity=-0.079 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|.++...|++++|...+....- .++..- ......+..++..+++..|.....++..... ..++.
T Consensus 373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~------l~P~~~-~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~~~-- 442 (553)
T PRK12370 373 DIKYYYGWNLFMAGQLEEALQTINECLK------LDPTRA-AAGITKLWITYYHTGIDDAIRLGDELRSQHL-QDNPI-- 442 (553)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCCh-hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccCHH--
Confidence 3456789999999999999999888521 122211 1122234456667899999988877643211 12333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
++...+.++...+++-+|-..|..+..
T Consensus 443 --~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 443 --LLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 234567778888999999999877654
No 257
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=28.00 E-value=3.9e+02 Score=25.33 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINR 172 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~K 172 (408)
.++=....|++|.+.|.|..|+.-+..+. +.+.++ ..--|....+++-|...|....|+.+...
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~-~~Yp~t---~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQML-RDYPDT---QATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHH-HHCCCC---chHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34445567899999999999999988874 342222 33456666778888899999999887543
No 258
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=27.90 E-value=1.2e+02 Score=22.94 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=14.2
Q ss_pred HHHHhCCCHHHHHHHHHHH
Q psy7321 326 LGALLQISAAKAEKIASHM 344 (408)
Q Consensus 326 La~lLgls~e~~E~~ls~m 344 (408)
|.+.||++++.++..+++|
T Consensus 22 l~~~lgv~~~~a~~~A~~i 40 (71)
T PF02742_consen 22 LVEVLGVDEEEAEEEACRI 40 (71)
T ss_dssp HHHTTT--HHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHH
Confidence 4578999999999998876
No 259
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=27.80 E-value=3.6e+02 Score=30.00 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHH
Q psy7321 26 KYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQV 105 (408)
Q Consensus 26 ~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~ 105 (408)
.|-.+++++ ...-+ ...+...++.++.|.|++---|.|+..+.+|-+..+|... + .|.=|
T Consensus 503 ~~p~Lv~El-p~~~~---l~~i~~VLq~LL~E~VsIRdl~~IlEtLad~~~~~~d~~~---L-------------tE~VR 562 (677)
T TIGR01399 503 EYPELVKEV-QRVLP---LQRIAEVLQRLVSEQVSIRNLRLILETLIEWAQREKDVVM---L-------------TEYVR 562 (677)
T ss_pred HHHHHHHHH-hccCC---HHHHHHHHHHHHhCCCccccHHHHHHHHHHHhccCCCHHH---H-------------HHHHH
Confidence 466777776 22221 5678999999999999999999999999999876655322 1 23347
Q ss_pred HHHHHHHHHHHHhh
Q psy7321 106 ASIRQHLALIYERE 119 (408)
Q Consensus 106 a~l~~~LA~~~e~~ 119 (408)
.+|.+.+..-|...
T Consensus 563 ~~L~r~I~~~~~~~ 576 (677)
T TIGR01399 563 IALKRYICHRYANG 576 (677)
T ss_pred HHHHHHHHHHHhCC
Confidence 88888887777653
No 260
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=27.62 E-value=1.4e+02 Score=27.67 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=36.5
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhHH
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWD 373 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W~ 373 (408)
.+-.+||+.+|++++-+=+.+.+|-.+|.|.- ..|.|+.-+.+.|..+.
T Consensus 170 ~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~----~~~~i~I~d~~~L~~~~ 218 (226)
T PRK10402 170 EKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKK----SKRGYLIKNRKQLSGLA 218 (226)
T ss_pred chHHHHHHHHCCcHHHHHHHHHHHHHCCCEEe----eCCEEEEeCHHHHHHHH
Confidence 47799999999999999999999999998854 23444444444454443
No 261
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.56 E-value=2.7e+02 Score=22.04 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=45.2
Q ss_pred HhhccHHHHHHHHhcCccccccccCCch---hHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 117 EREENWRDAANVLVGIPLETGQKQYSVD---YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 117 e~~gd~~eAa~~L~~i~~Et~~~~~~~~---~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
-..||+.+|.+.|...- |......... .--...+..++++...|++..|...++.+-...-+.+|..
T Consensus 9 ~~~~dy~~A~d~L~~~f-D~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~ 78 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYF-DYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR 78 (94)
T ss_pred HHcCCHHHHHHHHHHHH-HHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH
Confidence 46789999988888753 3322222222 2334467789999999999999999888866544445543
No 262
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=27.42 E-value=93 Score=27.56 Aligned_cols=33 Identities=3% Similarity=0.071 Sum_probs=30.5
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
.+|-++||..+|++.+-+=+.+.+|-.+|.|.-
T Consensus 143 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~ 175 (193)
T TIGR03697 143 RLSHQAIAEAIGSTRVTITRLLGDLRKKKLISI 175 (193)
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 578899999999999999999999999998854
No 263
>KOG2376|consensus
Probab=27.39 E-value=6.4e+02 Score=27.59 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCc-------------------------hhHHHHHHHHHHHhhhcCCh
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSV-------------------------DYKLQTYMKIARLYLEDEDP 163 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~-------------------------~~Kle~~L~i~RL~L~~~D~ 163 (408)
-+.-|.++.+.|+|++|.++++.+.--+ ....+. ..=-+.+...+=.+++.++|
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~-~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNN-SDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 3444777888889999999998873211 000000 01134555667778899999
Q ss_pred HHHHHHHHHhcc----cc--ccCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy7321 164 VQAEAFINRASL----LQ--AETKDETLQ---VHYKVCYARVLDYRRKFIEAAQRYSELSYKPI 218 (408)
Q Consensus 164 ~~A~~~i~Ka~~----~~--~~~~~~~lk---~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~ 218 (408)
.+|...+.++-. .. .+.++++.+ ...++.++.++...++-.+|...|-.+.....
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 999999988821 11 122222222 34456677788889999999999999886533
No 264
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=27.37 E-value=33 Score=28.65 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCceEEEec
Q psy7321 334 AAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 334 ~e~~E~~ls~mI~~grl~akID 355 (408)
...+|..|.+|...|+|.++||
T Consensus 61 A~~VE~~Liqlaq~G~l~~kI~ 82 (107)
T PF01984_consen 61 ARQVENQLIQLAQSGQLRGKID 82 (107)
T ss_dssp HHHHHHHHHHHHHCTSSSS-B-
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 4578999999999999999996
No 265
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=27.25 E-value=95 Score=21.50 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=22.8
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHH
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHM 344 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~m 344 (408)
.-...|+..+|+.+|+|..-+..++-+.
T Consensus 24 ~~~~~s~~~vA~~~~vs~~TV~ri~~~~ 51 (52)
T PF13542_consen 24 LRESRSFKDVARELGVSWSTVRRIFDRY 51 (52)
T ss_pred HhhcCCHHHHHHHHCCCHHHHHHHHHhh
Confidence 3444799999999999999998877553
No 266
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=27.20 E-value=71 Score=25.16 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=20.8
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
=.-||...||..+|.+.+++...+..|-
T Consensus 36 G~PVt~~~LA~a~g~~~e~v~~~L~~~p 63 (77)
T PF12324_consen 36 GQPVTVEQLAAALGWPVEEVRAALAAMP 63 (77)
T ss_dssp TS-B-HHHHHHHHT--HHHHHHHHHH-T
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHhCC
Confidence 4568999999999999999999999874
No 267
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=26.68 E-value=4.5e+02 Score=23.28 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=44.4
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEe--ccCCcEEEecCCCchhhHHHHHHHHHHHHHHHHHHHH
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYV--DQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIE 391 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akI--Dqv~giV~F~~~~~l~~W~~~I~~l~~~v~~v~~~i~ 391 (408)
.-+|-++||.+||++...+-+.+.++-.+|-+.-+= |-..|-..+-+. + .++.-+..+-..+..+...+.
T Consensus 27 ~~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~--i-~~~~i~d~Ik~~~~~~~~~lk 98 (158)
T TIGR00373 27 GEFTDEEISLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWR--I-NYEKALDVLKRKLEETAKKLR 98 (158)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEE--e-CHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999999999984322 223343333221 1 234444444444444444443
No 268
>KOG0553|consensus
Probab=26.68 E-value=5.2e+02 Score=25.70 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHH
Q psy7321 192 CYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYL 271 (408)
Q Consensus 192 ~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~ 271 (408)
+.|-=++..++|.+|-..|-++..-.. .+.-..+-+.++++ =|.-+.+--.+....|.-||... -.|..|--+|+
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~ys--kay~RLG~A~~ 160 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYS--KAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHH--HHHHHHHHHHH
Confidence 456677788999999999999875311 11222333333333 33333344455555565565531 13555555554
Q ss_pred HhhcCcchHHHHHHHhchhhhhhhcchhhhHHHHHHHHHHHHHHh-------ccccCChHHHHHHhCCC-----------
Q psy7321 272 DRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASK-------LYNNISFPELGALLQIS----------- 333 (408)
Q Consensus 272 ~~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~ViEhNi~~isk-------~Ys~Itl~~La~lLgls----------- 333 (408)
. .-+|+.....+++++.-|+... +...||.++.+ +=..+.-.+++.++|-.
T Consensus 161 ~-------~gk~~~A~~aykKaLeldP~Ne----~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~~~l 229 (304)
T KOG0553|consen 161 A-------LGKYEEAIEAYKKALELDPDNE----SYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFNGDL 229 (304)
T ss_pred c-------cCcHHHHHHHHHhhhccCCCcH----HHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhcccc
Confidence 3 2233333444455554555321 34444444443 23556667777777763
Q ss_pred --HHHHHHHHHHHHhcCceEE
Q psy7321 334 --AAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 334 --~e~~E~~ls~mI~~grl~a 352 (408)
.+.+-...+.|+.+|.++|
T Consensus 230 ~nnp~l~~~~~~m~~~~~~~~ 250 (304)
T KOG0553|consen 230 MNNPQLMQLASQMMKDGALNG 250 (304)
T ss_pred ccCHHHHHHHHHHhhcccccC
Confidence 3455666788888666654
No 269
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=26.55 E-value=2.5e+02 Score=22.86 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=36.9
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..++..+||..++++...+=..+.+|...|-|.=.-|.-|+
T Consensus 42 ~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~ 82 (109)
T TIGR01889 42 GKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDE 82 (109)
T ss_pred CcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccC
Confidence 45999999999999999999999999999999876666665
No 270
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=26.54 E-value=1.2e+02 Score=28.99 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy7321 307 TEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEG 348 (408)
Q Consensus 307 iEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~g 348 (408)
++.-|..+-+-+..++..+||+.||+|++-+-+-|..|=..+
T Consensus 8 R~~~I~~~l~~~~~v~v~eLa~~~~VS~~TIRRDL~~Le~~~ 49 (252)
T PRK10681 8 RIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPV 49 (252)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHhCCCHHHHHHHHHHhhcCe
Confidence 444555556678999999999999999999999888755443
No 271
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=26.37 E-value=2e+02 Score=25.41 Aligned_cols=101 Identities=14% Similarity=0.004 Sum_probs=58.4
Q ss_pred hcCCCCcchhchHHHHHhhh--cCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccc---cccCCchhHHHH
Q psy7321 75 LVSQPDEVAKPVSHFTLDKV--QPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETG---QKQYSVDYKLQT 149 (408)
Q Consensus 75 l~~l~~~~~~~~~~~~L~~i--~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~---~~~~~~~~Kle~ 149 (408)
+++||...+..-....|-.| .+|+++ |.|+..++..+.+.........+|.+...+-.++.+ ....+ ...-.+
T Consensus 14 ~~~~~~~~~~~~~~~~Ll~iAkADG~Vs-e~Ei~~~~~~m~~~~L~~e~~~~aie~~~~~~L~~~~~~~~~~~-~~~~~l 91 (150)
T cd07311 14 FDQIPTNQDKLAYLKALLVCAKGDGVIS-PEERDWAIGYAAARGGDADMVEELKEYTADEDLEEVDFRSPNIK-SSRRAL 91 (150)
T ss_pred cccCCCcccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHhCccccHHHHHHHHHhcc-hhHHHH
Confidence 67888766665555666555 478776 566777777777764444445555444111111111 11112 222334
Q ss_pred HHHHHHHhhhcCChHHHHHH-HHHhcccc
Q psy7321 150 YMKIARLYLEDEDPVQAEAF-INRASLLQ 177 (408)
Q Consensus 150 ~L~i~RL~L~~~D~~~A~~~-i~Ka~~~~ 177 (408)
.+..+++.+.+|.+..++.. +.++....
T Consensus 92 l~~~l~vA~ADG~l~~~E~~lL~~iA~~L 120 (150)
T cd07311 92 LYDAIQVCAADGELSPGEVAAVRKAASLL 120 (150)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 46688999999999998776 55555433
No 272
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=26.36 E-value=8.4e+02 Score=26.29 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=63.7
Q ss_pred cCccc---hHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhc-CChHHHHHHH
Q psy7321 95 QPRVI---SFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLED-EDPVQAEAFI 170 (408)
Q Consensus 95 ~~~~i---~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~-~D~~~A~~~i 170 (408)
...+| -+..+...+...+-.++++..+.-+.|.+-..+-.-. .|=-+....+.--+.++..++.. .||.+|-..+
T Consensus 461 ~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYa-NRYR~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i 539 (560)
T PF06160_consen 461 NQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYA-NRYRSDNPEVDEALTEAEDLFRNEYDYEKALETI 539 (560)
T ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 34444 4555666777778888888888877777655543322 22125556788889999999998 9999998887
Q ss_pred HHhccccccCCcHHHHHHH
Q psy7321 171 NRASLLQAETKDETLQVHY 189 (408)
Q Consensus 171 ~Ka~~~~~~~~~~~lk~~y 189 (408)
..|-..+.+|.-..+.-.|
T Consensus 540 ~~alE~vePG~~~ri~~~y 558 (560)
T PF06160_consen 540 ATALEKVEPGAYKRIEDSY 558 (560)
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 7776666555555554444
No 273
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=26.31 E-value=4.9e+02 Score=23.58 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcc
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL 175 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~ 175 (408)
-....|.-+...|+|.+|.+.|..+.-. +. ....--+..+.++..+...+|+..|.....+--.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P--~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YP--NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---T--TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC--CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456788889999999999999997432 11 1223345567789999999999999888877543
No 274
>PRK10167 hypothetical protein; Provisional
Probab=26.17 E-value=3e+02 Score=24.91 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=44.2
Q ss_pred HhhccchhhchHH----HHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHH
Q psy7321 54 IVNENVSLVISRQ----ILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLAL 114 (408)
Q Consensus 54 ~~~e~v~~~~~r~----iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~ 114 (408)
.+.+.+..-.+|. +++.+..++++-=+...|..+.+.|+.-..|++-+.+-..-|+..+.+
T Consensus 78 ~lm~al~~~~t~~~~~NvL~Hi~GYFKk~Ls~~EKq~l~~lI~~Yr~g~vpl~vpltlL~h~~~~ 142 (169)
T PRK10167 78 RVIVLLSHPANVRDHTNVLMHVQGYFRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMAL 142 (169)
T ss_pred HHHHHHcCCCCcchhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3334444445544 888888998875556677788899999999999998777777655543
No 275
>KOG1070|consensus
Probab=26.12 E-value=1.6e+02 Score=35.33 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA 178 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~ 178 (408)
+...|+.+|+.-+.+.+|.++|..+-- .. ++...+|+.-+-..|..++-..|...++||-....
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~K-----KF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLK-----KF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHH-----Hh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 446899999999999999999998632 21 36788999999999999999999999999975443
No 276
>PRK04217 hypothetical protein; Provisional
Probab=26.05 E-value=2.2e+02 Score=23.93 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=32.4
Q ss_pred ccccCChHHHHHHhCCCHHHH-------HHHHHHHHhcCceEEEeccCCc
Q psy7321 317 LYNNISFPELGALLQISAAKA-------EKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~-------E~~ls~mI~~grl~akIDqv~g 359 (408)
+|..+|.+++|+.+|+|..-+ .+.+.+++..+...+.+-+.|.
T Consensus 55 ~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L~~~~~~~~~~~~~~ 104 (110)
T PRK04217 55 DYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLVEGRELIILPQGNE 104 (110)
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhccceeEecCCcc
Confidence 568899999999999996654 4555667777777777665554
No 277
>KOG1155|consensus
Probab=26.05 E-value=8.1e+02 Score=26.14 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc-c--CCc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA-E--TKD 182 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~-~--~~~ 182 (408)
.|+=..|++.|++.+..++|.+++...-. . ++. --..+++.+.||=+.+|...|..+..|--.... + .++
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~-~-----~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAIL-L-----GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHh-c-----ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 46778899999999999999999887532 2 111 225678889999999999999888666543221 1 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.-.+.+ .-.+.+..-.++|-+|+-+-.....
T Consensus 505 ~t~ka~--~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 505 ETIKAR--LFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHH--HHHHHHHHhhcchHHHHHHHHHHhc
Confidence 233322 2245555555677777765555554
No 278
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.01 E-value=4.1e+02 Score=22.51 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHh
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLV 130 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~ 130 (408)
.|.+-..-|.++|..|++.+|.++++
T Consensus 98 ~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp BHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45666778999999999999999876
No 279
>PF13518 HTH_28: Helix-turn-helix domain
Probab=25.85 E-value=1.1e+02 Score=21.00 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=30.0
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEecc
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQ 356 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDq 356 (408)
+-...|...+|..+|+|...+..-+.+.=..| +.|-.++
T Consensus 9 ~~~g~s~~~~a~~~gis~~tv~~w~~~y~~~G-~~~l~~~ 47 (52)
T PF13518_consen 9 YLEGESVREIAREFGISRSTVYRWIKRYREGG-IEGLKPK 47 (52)
T ss_pred HHcCCCHHHHHHHHCCCHhHHHHHHHHHHhcC-HHHhccC
Confidence 33566999999999999999988888877766 4454443
No 280
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=25.79 E-value=6.6e+02 Score=24.87 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=46.9
Q ss_pred HHHHHhhccHHHHHHHHhc-CccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcc
Q psy7321 113 ALIYEREENWRDAANVLVG-IPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL 175 (408)
Q Consensus 113 A~~~e~~gd~~eAa~~L~~-i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~ 175 (408)
|.-..+.|.+++|...|++ ++ +.-+.+.+.-.-|..+|+|...|-+.-|...+.....
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~-----~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLA-----QAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcc-----cCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556678899999999997 43 2347788999999999999999999999888766543
No 281
>PRK04841 transcriptional regulator MalT; Provisional
Probab=25.53 E-value=5e+02 Score=29.16 Aligned_cols=108 Identities=7% Similarity=-0.066 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
+..+...++.++...|++.+|...+....-.. ..-+.....-........+...+|+..|..+..++.......++..
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~ 528 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAEL--PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH 528 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH
Confidence 34455567888899999999998887642111 1111111333344566678889999999999888864433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.........+.++...+++-+|...+.+..
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333344455777777788888877776654
No 282
>KOG2908|consensus
Probab=25.47 E-value=7.4e+02 Score=25.30 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcc-hhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccH
Q psy7321 44 TECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEV-AKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENW 122 (408)
Q Consensus 44 ~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~-~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~ 122 (408)
..++..+...++++-=+-+--++.|.-+....+++.|.. ....+....+.+.+-+.- +.+..+....|.+|...||.
T Consensus 54 ~~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DL 131 (380)
T KOG2908|consen 54 GDLLLQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDL 131 (380)
T ss_pred chHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccH
Confidence 345666666666665555555667777777777777532 233344444444322211 13444444555556677888
Q ss_pred HHHHHHHhcCcccc-ccccCCchhHHHHHHHHHHHhhhcCChHHHHHH
Q psy7321 123 RDAANVLVGIPLET-GQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAF 169 (408)
Q Consensus 123 ~eAa~~L~~i~~Et-~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~ 169 (408)
.++-+.|.+..-.- .-..++..--.-+|..-..+|-..+|+..+...
T Consensus 132 k~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 132 KEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHH
Confidence 88877777654211 012344444566777778888888887766544
No 283
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.45 E-value=9.7e+02 Score=26.70 Aligned_cols=135 Identities=12% Similarity=-0.019 Sum_probs=67.6
Q ss_pred ccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCcccc
Q psy7321 57 ENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLET 136 (408)
Q Consensus 57 e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et 136 (408)
+..-.+....+|..+...+...++. ..+..++....|+ ....+..+|.+.-+.+.+++|.......- ..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea---~~~l~~~~~~~Pd-------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l-~~ 149 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEG---LAVWRGIHQRFPD-------SSEAFILMLRGVKRQQGIEAGRAEIELYF-SG 149 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHH---HHHHHHHHhhCCC-------cHHHHHHHHHHHHHhccHHHHHHHHHHHh-hc
Confidence 3333344445555555555444432 1223333333444 34455666777777777777766655431 11
Q ss_pred ccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 137 GQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 137 ~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.-+..+......-.....+.+..|...++|+.. .. ..+++..+. .|..+...++.-+|...|....
T Consensus 150 ------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~-~~-p~~~~~~~~----~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 150 ------GSSSAREILLEAKSWDEIGQSEQADACFERLSR-QH-PEFENGYVG----WAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred ------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh-cC-CCcHHHHHH----HHHHHHHcCCHHHHHHHHHHHH
Confidence 112334445556666667777777777777764 11 122333222 3444444555555555555544
No 284
>PF04793 Herpes_BBRF1: BRRF1-like protein; InterPro: IPR006878 Most proteins in this entry are uncharacterised viral proteins translated from gene 49. The UL6 locus of pseudorabies virus (PRV) has a gene cluster with homology to herpes simplex virus UL5, UL6, UL7 and UL8, Epstein-Barr virus BBRF1 and BBRF2, and Kaposi sarcoma-associated herpes virus ORF43 and ORF42 [].
Probab=25.43 E-value=5e+02 Score=25.61 Aligned_cols=106 Identities=14% Similarity=0.063 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCc
Q psy7321 2 DISTLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDE 81 (408)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~ 81 (408)
|+..|...|..++-+++.++...+.-. |...+= +..-+.++.+|...|...+--=|..+.-+.+.|..++++
T Consensus 5 d~~~vv~el~~i~~~~~~~~~~~p~~~--leR~~f------L~kv~q~L~qhr~~E~~Ivp~i~~ni~y~L~~L~~~~~~ 76 (284)
T PF04793_consen 5 DIGQVVHELNTISVSTRVPRSSHPLLA--LERGLF------LLKVCQVLMQHRQSEPFIVPKIRSNIIYFLEELKELSPG 76 (284)
T ss_pred CHHHHHHHHhccccCCCCCCccccHHH--HHHHHH------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCh
Confidence 678888888888876655553222211 322221 345577888888888887777788999999999998877
Q ss_pred chhchHHHHHhhh-cCccchHHHHHHHHHHHHHHH
Q psy7321 82 VAKPVSHFTLDKV-QPRVISFEEQVASIRQHLALI 115 (408)
Q Consensus 82 ~~~~~~~~~L~~i-~~~~i~~E~e~a~l~~~LA~~ 115 (408)
.......+.|+.+ ..|-..+|.+.+.....|...
T Consensus 77 ~~~~~i~~~L~~l~~~~d~~L~~~L~~~l~~ll~~ 111 (284)
T PF04793_consen 77 DCQEAIKEILDHLEEAGDSNLERELAKGLPKLLGC 111 (284)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhh
Confidence 6667778888886 678888988887776666554
No 285
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=25.29 E-value=77 Score=22.72 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=19.3
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIAS 342 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls 342 (408)
...|+=.+||+.+|+++..+-+-+|
T Consensus 26 ~~~vSS~~La~~~gi~~~qVRKDlS 50 (50)
T PF06971_consen 26 VERVSSQELAEALGITPAQVRKDLS 50 (50)
T ss_dssp -SEE-HHHHHHHHTS-HHHHHHHHH
T ss_pred CeeECHHHHHHHHCCCHHHhcccCC
Confidence 5789999999999999999877654
No 286
>KOG2796|consensus
Probab=25.25 E-value=2.7e+02 Score=27.51 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHH---HHHhccccccCCcH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAF---INRASLLQAETKDE 183 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~---i~Ka~~~~~~~~~~ 183 (408)
++..-++.++..-|+|.=..+++.++ ...+..++-.+.-..+|+.+..||..-|++| +.|..++..+....
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~v------i~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSV------IKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHH------HHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPI 218 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~ 218 (408)
-+-.+ -++.++...+||.+|.+.|-++..+..
T Consensus 252 ~~V~~---n~a~i~lg~nn~a~a~r~~~~i~~~D~ 283 (366)
T KOG2796|consen 252 IMVLM---NSAFLHLGQNNFAEAHRFFTEILRMDP 283 (366)
T ss_pred HHHHh---hhhhheecccchHHHHHHHhhccccCC
No 287
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=25.23 E-value=2.7e+02 Score=23.79 Aligned_cols=64 Identities=11% Similarity=-0.023 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
......+|.++...|++++|...+..... .++ .=.+.+......+...|++..|.....++-..
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~------l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALM------LDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44557799999999999999999888532 111 12466777788899999999999999888653
No 288
>KOG1126|consensus
Probab=25.04 E-value=6.3e+02 Score=27.78 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhhc--cHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 102 EEQVASIRQHLALIYEREE--NWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 102 E~e~a~l~~~LA~~~e~~g--d~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
+.++-.+.+.+|+.|...- ++.+|...++.++-.- ...+ =+.....|.|++..||.+|+.+.+++...
T Consensus 313 ~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~----~nt~---wvl~q~GrayFEl~~Y~~a~~~F~~~r~~ 382 (638)
T KOG1126|consen 313 ASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHH----YNTG---WVLSQLGRAYFELIEYDQAERIFSLVRRI 382 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhc----CCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567888889999888654 6899999999976443 2233 56667899999999999999998777653
No 289
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=24.87 E-value=1.1e+02 Score=27.60 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=29.9
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
.+|-.+||+.+|++++.+-+.+.+|-.+|.|.
T Consensus 168 ~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~ 199 (211)
T PRK11753 168 KITRQEIGRIVGCSREMVGRVLKMLEDQGLIS 199 (211)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 68889999999999999999999999999874
No 290
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=24.80 E-value=68 Score=22.83 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.1
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHH
Q psy7321 320 NISFPELGALLQISAAKAEKIASH 343 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~ 343 (408)
.+++.+||+.+|+++.++-+.+..
T Consensus 3 ~i~V~elAk~l~v~~~~ii~~l~~ 26 (54)
T PF04760_consen 3 KIRVSELAKELGVPSKEIIKKLFK 26 (54)
T ss_dssp EE-TTHHHHHHSSSHHHHHHHH-H
T ss_pred ceEHHHHHHHHCcCHHHHHHHHHH
Confidence 578999999999999988877733
No 291
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=24.72 E-value=3.4e+02 Score=21.91 Aligned_cols=57 Identities=11% Similarity=0.361 Sum_probs=40.2
Q ss_pred HHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCC----------chhhHHHHHHHHH
Q psy7321 312 LSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETRE----------ILPSWDKQIESLC 380 (408)
Q Consensus 312 ~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~----------~l~~W~~~I~~l~ 380 (408)
.+++.+=.-|+.+..|.++|-++.. +..||..|+|-+ |.+.+|+ .+..|+.-+..+.
T Consensus 4 ~~~~~p~d~v~~~~FA~~IGKt~sA----Vr~Mi~~gKLP~--------i~~~dP~~p~~rgE~wI~~~ewn~~~~~a~ 70 (87)
T PF10743_consen 4 QVSEYPSDAVTYEKFAEYIGKTPSA----VRKMIKAGKLPV--------IEMRDPEKPNGRGEWWIYIPEWNRGVREAY 70 (87)
T ss_pred hHHhhhccccCHHHHHHHHCCCHHH----HHHHHHcCCCCe--------EeccCCCCCCCceeEEEeHHHHHHHHHHHH
Confidence 3344456789999999999998754 678999999864 4444331 4678887665443
No 292
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=24.49 E-value=9.3e+02 Score=26.14 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCCCcchhHHHHHHHHHHhhccc
Q psy7321 27 YRSILELILKNQDTTTCTECLNLFVEAIVNENV 59 (408)
Q Consensus 27 y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v 59 (408)
|..+++....+ .++++..=+...|+.-.+|.|
T Consensus 102 l~el~q~y~en-~n~~l~~lWer~ve~dfnDvv 133 (711)
T COG1747 102 LLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV 133 (711)
T ss_pred HHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH
Confidence 55555555444 333455555556665555543
No 293
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=24.33 E-value=4.6e+02 Score=29.11 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHH
Q psy7321 25 DKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQ 104 (408)
Q Consensus 25 ~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e 104 (408)
+.|..+++++ ...-+ ...+...++.++.|.|++---|.|+..+.++-+..+|... + .|.=
T Consensus 498 ~~~p~Lv~el-~~~l~---l~~i~~VLq~LL~E~VsIRdl~tIlE~l~d~~~~~kd~~~---L-------------tE~V 557 (675)
T PRK12720 498 KRYGELVKEL-QRQLP---VGKIAEILQRLVSERVSIRDLRTIFGTLVEWAPREKDVVM---L-------------TEYV 557 (675)
T ss_pred HHHHHHHHHH-hccCC---HHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcccCCHHH---H-------------HHHH
Confidence 3477788887 22221 5788999999999999999999999999999766554321 1 2444
Q ss_pred HHHHHHHHHHHHHhh
Q psy7321 105 VASIRQHLALIYERE 119 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~ 119 (408)
|.+|.+.++.-|...
T Consensus 558 R~~L~r~I~~~~~~~ 572 (675)
T PRK12720 558 RIALRRHILRRFNHE 572 (675)
T ss_pred HHHHHHHHHHHhcCC
Confidence 788888888877653
No 294
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=24.26 E-value=74 Score=18.82 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.3
Q ss_pred HHHHHHHhhccHHHHHHHHhcCc
Q psy7321 111 HLALIYEREENWRDAANVLVGIP 133 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~ 133 (408)
.+-+.|.+.|++++|.+++.+++
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHh
Confidence 35577899999999999998875
No 295
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=24.26 E-value=1.6e+02 Score=28.58 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=34.7
Q ss_pred HHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 311 LLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 311 i~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
|..+-+-...++..+||+.||+|+.-+-+.+..|=.+|.+.
T Consensus 22 Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~ 62 (269)
T PRK09802 22 IIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAV 62 (269)
T ss_pred HHHHHHHcCCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeE
Confidence 33334456679999999999999999999999999999886
No 296
>PRK11189 lipoprotein NlpI; Provisional
Probab=24.21 E-value=4.6e+02 Score=25.35 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|.+|...|++++|...+.... + +++.. ...+.....++...+++..|...+.++-.... +++.
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al-~-----l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~-- 167 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVL-E-----LDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPY-- 167 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-H-----hCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH--
Confidence 455779999999999999999887742 1 22222 34667778888899999999999988865322 2331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
......+....+++-+|-..|....
T Consensus 168 ---~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 168 ---RALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred ---HHHHHHHHHccCCHHHHHHHHHHHH
Confidence 1222333444567888888886654
No 297
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=24.18 E-value=3.5e+02 Score=25.55 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=41.4
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecC
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~ 365 (408)
...||..+||+.+|+|..-+=+.+.+|...|-|.-.+|.-+..|....
T Consensus 19 ~~~IS~~eLA~~L~iS~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTe 66 (217)
T PRK14165 19 TVKISSSEFANHTGTSSKTAARILKQLEDEGYITRTIVPRGQLITITE 66 (217)
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEcCCceEEEECH
Confidence 457999999999999999999999999999999998887555555543
No 298
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=24.09 E-value=2.6e+02 Score=22.23 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=34.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 324 PELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 324 ~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
.+||+.+++++.-+=..+-+|...|-+.=..|..|+
T Consensus 40 ~~la~~l~i~~~~vt~~l~~Le~~glv~r~~~~~Dr 75 (126)
T COG1846 40 KELAERLGLDRSTVTRLLKRLEDKGLIERLRDPEDR 75 (126)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 999999999999999999999999999999998887
No 299
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=23.96 E-value=8.2e+02 Score=25.32 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
++.-..=|-+...+|||..|-+.+..-.- .+ +.-+--++.-+|-.-..+|+.++..|++++..... |+.+
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae------~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~---~~~l 153 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAE------HG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG---DDTL 153 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhh------cC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC---CchH
Confidence 33344446677789999999999887221 12 23455667778999999999999999999986432 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.-....++++..+|||-.|...-.++...
T Consensus 154 --~v~ltrarlll~~~d~~aA~~~v~~ll~~ 182 (400)
T COG3071 154 --AVELTRARLLLNRRDYPAARENVDQLLEM 182 (400)
T ss_pred --HHHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 22457899999999998888888887764
No 300
>PF00771 FHIPEP: FHIPEP family; InterPro: IPR001712 The Flagellar/Hr/Invasion Proteins Export Pore (FHIPEP) family [, ] consists of a number of proteins that constitute the type III secretion (or signal peptide-independent) pathway apparatus [, ]. This mechanism translocates proteins lacking an N-terminal signal peptide across the cell membrane in one step, as it does not require an intermediate periplasmic process to cleave the signal peptide. It is a common pathway amongst Gram-negative bacteria for secreting toxic and flagellar proteins. The pathway apparatus comprises three components: two within the inner membrane and one within the outer []. An FHIPEP protein is located within the inner membrane, although it is unknown which component it constitutes. FHIPEP proteins have all about 700 amino-acid residues. Within the sequence, the N terminus is highly conserved and hydrophobic, suggesting that this terminus is embedded within the membrane, with 6-8 transmembrane (TM) domains, while the C terminus is less conserved and appears to be devoid of TM regions. It is possible that members of the FHIPEP family serve as pores for the export of specific proteins.; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3MIX_A 2X4A_A 3LW9_A 2X49_A 3MYD_A 3A5I_A.
Probab=23.94 E-value=3.1e+02 Score=30.36 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHH
Q psy7321 27 YRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVA 106 (408)
Q Consensus 27 y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a 106 (408)
|-.+++++....-+ ...+...++.++.|.|++---|.|+..+.+|-+..+|... + .|.=|.
T Consensus 490 ~P~LV~El~p~~l~---l~~l~~VLq~LL~E~VsIRnl~~ILEaLae~a~~~kD~~~---L-------------tE~VR~ 550 (658)
T PF00771_consen 490 YPELVEELIPRQLP---LGRLQEVLQRLLRERVSIRNLRTILEALAEWAPREKDPDM---L-------------TEYVRQ 550 (658)
T ss_dssp HHHHHHHHCCCCS----HHHHHHHHHHHHHTT-----HHHHHHHHHHHCCCGTSHHH---H-------------HHHHHH
T ss_pred chHHHHHhhhccCC---HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHhhccCChHH---H-------------HHHHHH
Confidence 77788888533322 5689999999999999999999999999999876655321 1 233377
Q ss_pred HHHHHHHHHHHhh
Q psy7321 107 SIRQHLALIYERE 119 (408)
Q Consensus 107 ~l~~~LA~~~e~~ 119 (408)
+|...++.-|...
T Consensus 551 aL~r~I~~~~~~~ 563 (658)
T PF00771_consen 551 ALGRQICQRYADE 563 (658)
T ss_dssp HTHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCc
Confidence 7778887777665
No 301
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=23.92 E-value=1.2e+02 Score=16.63 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcC
Q psy7321 109 RQHLALIYEREENWRDAANVLVGI 132 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i 132 (408)
-..+|..+...|++++|...+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356889999999999999888653
No 302
>PF04327 DUF464: Protein of unknown function (DUF464); InterPro: IPR007422 This entry is represented by Bacteriophage Cp-1, Orf13. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2IDL_A 2G0J_D 2G0I_B 2P92_B 1S12_C.
Probab=23.71 E-value=1.5e+02 Score=24.22 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=34.2
Q ss_pred eEEEeccCCcEEEecCCCchhhHHHHHHHHHHHHHHHHHHHHhhChhhh
Q psy7321 350 MNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIETVQPEWL 398 (408)
Q Consensus 350 l~akIDqv~giV~F~~~~~l~~W~~~I~~l~~~v~~v~~~i~~~~p~~~ 398 (408)
+...++..+|.+.|.-++.+..=+...+-+++.+..-...|.+++|+++
T Consensus 53 ~~~~~~~~~G~l~~~i~~~~~~~~~~~q~ll~~~~~gL~~i~~~Yp~~I 101 (103)
T PF04327_consen 53 LDVDIEIEDGYLKIEIPNDLDEKDEKAQLLLETLLLGLKSIEEQYPDYI 101 (103)
T ss_dssp SSEEEEETTTEEEEEETTTTTCTCHHHHHHHHHHHHHHHHHHHHTTTTE
T ss_pred CCceEEecCCEEEEEEcCCCccccHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4466777888888875543222345556777777778888999999986
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=23.69 E-value=94 Score=19.89 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhccHHHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAA 126 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa 126 (408)
+.....||.+|...|++++|.
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 455678999999999999984
No 304
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=23.64 E-value=2.4e+02 Score=21.89 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=34.6
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
-..++|.+|.+.+|+|...+-..+..+...|-+..+-.-.++
T Consensus 12 ~~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~ 53 (80)
T PF13601_consen 12 NEEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGR 53 (80)
T ss_dssp HSEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCC
Confidence 467999999999999999999999999999999887655544
No 305
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.39 E-value=1.2e+02 Score=20.38 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=26.6
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 322 SFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 322 tl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
+++++|+++|+++..+.. .+..|.+.+.-+. +|.-.|.
T Consensus 2 ~~~e~a~~~gv~~~tlr~----~~~~g~l~~~~~~-~~~~~y~ 39 (49)
T cd04761 2 TIGELAKLTGVSPSTLRY----YERIGLLSPARTE-GGYRLYS 39 (49)
T ss_pred cHHHHHHHHCcCHHHHHH----HHHCCCCCCCcCC-CCCEEeC
Confidence 678999999999886664 4778887743332 3555564
No 306
>PRK15337 type III secretion system protein InvA; Provisional
Probab=23.38 E-value=4.2e+02 Score=29.52 Aligned_cols=74 Identities=11% Similarity=0.219 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHH
Q psy7321 26 KYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQV 105 (408)
Q Consensus 26 ~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~ 105 (408)
.|-.+++++ ...- -...+...++.++.|.|++---|.|+..+.++-+..+|... + .|.=|
T Consensus 513 ~~p~Lv~el-p~~l---~l~~i~~VLq~LL~E~VsIRdl~~IlE~l~d~~~~~kd~~~---L-------------tE~VR 572 (686)
T PRK15337 513 KYPDLLKEV-YRHA---TVQRISEVLQRLLSERISIRNMKLIMEALALWAPREKDVIM---L-------------VEHVR 572 (686)
T ss_pred HCHHHHHHH-hccC---CHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhccCCCHHH---H-------------HHHHH
Confidence 366677776 2221 15678999999999999999999999999999776554322 1 23337
Q ss_pred HHHHHHHHHHHHhh
Q psy7321 106 ASIRQHLALIYERE 119 (408)
Q Consensus 106 a~l~~~LA~~~e~~ 119 (408)
.+|.+.+..-|...
T Consensus 573 ~~L~r~I~~~~~~~ 586 (686)
T PRK15337 573 GALARYICHKFAAG 586 (686)
T ss_pred HHHHHHHHHHhccC
Confidence 77777777766533
No 307
>PHA02943 hypothetical protein; Provisional
Probab=23.17 E-value=5.5e+02 Score=23.06 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=38.2
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
.-.-|.+++|+.||+|-.+|+..+--+=.+|.+.- +-+..-.+++-.+
T Consensus 22 ~G~~TtseIAkaLGlS~~qa~~~LyvLErEG~Vkr-V~~G~~tyw~l~~ 69 (165)
T PHA02943 22 DGCKTTSRIANKLGVSHSMARNALYQLAKEGMVLK-VEIGRAAIWCLDE 69 (165)
T ss_pred cCCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEE-EeecceEEEEECh
Confidence 45667899999999999999999999999999864 4345555665544
No 308
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=22.92 E-value=9.5e+02 Score=25.71 Aligned_cols=72 Identities=26% Similarity=0.189 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHH
Q psy7321 144 DYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAE 223 (408)
Q Consensus 144 ~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e 223 (408)
...+=++.-.+..|-..||+.+|-.+|+++-.. ...- ..+|...|+++-+.++|.+|+..+-++-. .+..+
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~----~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~D 261 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL----VELYMTKARILKHAGDLKEAAEAMDEARE---LDLAD 261 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhh
Confidence 345666677899999999999999999998652 2222 45678899999999999999999988874 34444
Q ss_pred H
Q psy7321 224 R 224 (408)
Q Consensus 224 ~ 224 (408)
|
T Consensus 262 R 262 (517)
T PF12569_consen 262 R 262 (517)
T ss_pred H
Confidence 4
No 309
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=22.89 E-value=1.2e+02 Score=28.05 Aligned_cols=32 Identities=9% Similarity=0.295 Sum_probs=29.4
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
.+|-++||+.+|++.+.+=+.+.+|-.+|.|.
T Consensus 184 ~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~ 215 (235)
T PRK11161 184 TMTRGDIGNYLGLTVETISRLLGRFQKSGMLA 215 (235)
T ss_pred cccHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47789999999999999999999999999875
No 310
>PF14493 HTH_40: Helix-turn-helix domain
Probab=22.69 E-value=1.1e+02 Score=24.20 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=29.4
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGR 349 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~gr 349 (408)
...|++++|+.-|+++.-++..+++++..|.
T Consensus 12 ~G~si~eIA~~R~L~~sTI~~HL~~~~~~g~ 42 (91)
T PF14493_consen 12 KGLSIEEIAKIRGLKESTIYGHLAELIESGE 42 (91)
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 5789999999999999999999999999997
No 311
>KOG3616|consensus
Probab=22.25 E-value=1.1e+02 Score=34.31 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=58.2
Q ss_pred HHhhhcCccchHHHHHHHHH---HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHH
Q psy7321 90 TLDKVQPRVISFEEQVASIR---QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQA 166 (408)
Q Consensus 90 ~L~~i~~~~i~~E~e~a~l~---~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A 166 (408)
.+.|||.-..-|+.|.-|+- +.-..++-..+||..|-++-.. + ......+++.-|+|=.++.+|+.+|
T Consensus 1028 nitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~-h--------~~~~l~dv~tgqar~aiee~d~~ka 1098 (1636)
T KOG3616|consen 1028 NITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEA-H--------CEDLLADVLTGQARGAIEEGDFLKA 1098 (1636)
T ss_pred cchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHh-h--------ChhhhHHHHhhhhhccccccchhhh
Confidence 36678776677777766653 2334778899999988776433 2 2345678999999999999999999
Q ss_pred HHHHHHhcc
Q psy7321 167 EAFINRASL 175 (408)
Q Consensus 167 ~~~i~Ka~~ 175 (408)
+.++-|++.
T Consensus 1099 e~fllrank 1107 (1636)
T KOG3616|consen 1099 EGFLLRANK 1107 (1636)
T ss_pred hhheeecCC
Confidence 999888864
No 312
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=22.22 E-value=2.3e+02 Score=22.98 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=30.5
Q ss_pred HHHHHHHhcccc-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 166 AEAFINRASLLQ-AETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 166 A~~~i~Ka~~~~-~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
...+++.+-... ..-+|++-+.||+.|.+.+...+--=-+.-.+|.++|.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~ 71 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFD 71 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554332 24467788899999999987763222233336667764
No 313
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=22.15 E-value=4.1e+02 Score=21.41 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcch--hchHHHHHhhhc-CccchHHHHHHHHHHHHH
Q psy7321 45 ECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVA--KPVSHFTLDKVQ-PRVISFEEQVASIRQHLA 113 (408)
Q Consensus 45 ~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~--~~~~~~~L~~i~-~~~i~~E~e~a~l~~~LA 113 (408)
+.|..++..+++..- -....++..+-.....+++... -.........|. .|.-|++.|.+||...|+
T Consensus 4 ~~lD~la~~f~~~~~--~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E~~RL~~lL~ 73 (95)
T PF07749_consen 4 EELDELAAEFVAASD--DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKEIARLERLLE 73 (95)
T ss_dssp HHHHHHHHHHHHS-C--HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcH--HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHHHHHHHHHHh
Confidence 344445555544332 2223488888888888887533 334556677875 569999999999988887
No 314
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=22.04 E-value=1.2e+02 Score=23.19 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 324 PELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 324 ~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
-++.+.||+++..+-.-+++|..+|.|...
T Consensus 27 i~ll~~~Gv~e~avR~alsRl~~~G~L~~~ 56 (70)
T PF07848_consen 27 IRLLAAFGVSESAVRTALSRLVRRGWLESE 56 (70)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCChHHHHHHHHHHHHcCceeee
Confidence 357788999999999999999999999763
No 315
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=22.01 E-value=2.5e+02 Score=20.33 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=23.4
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
-..+++++||+.+|+|.--+-..+..+=
T Consensus 17 ~~~~~~~ela~~l~~S~rti~~~i~~L~ 44 (59)
T PF08280_consen 17 NKWITLKELAKKLNISERTIKNDINELN 44 (59)
T ss_dssp HTSBBHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5789999999999999998888887753
No 316
>KOG2047|consensus
Probab=22.01 E-value=3.1e+02 Score=30.39 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHH----HHHHHHHHhcCCCCcchhchHHHHHhhhcCc
Q psy7321 22 DQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQ----ILTDVSTHLVSQPDEVAKPVSHFTLDKVQPR 97 (408)
Q Consensus 22 ~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~----iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~ 97 (408)
+..+.|-..|... +..+....-..+++|+...+=.+.+ +-..+|+.+.+.|+..+ .+..=.-+..|
T Consensus 170 ~~~eeyie~L~~~-------d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~---slnvdaiiR~g 239 (835)
T KOG2047|consen 170 EAREEYIEYLAKS-------DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQ---SLNVDAIIRGG 239 (835)
T ss_pred HHHHHHHHHHHhc-------cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhc---ccCHHHHHHhh
Q ss_pred cchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhc
Q psy7321 98 VISFEEQVASIRQHLALIYEREENWRDAANVLVG 131 (408)
Q Consensus 98 ~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~ 131 (408)
.--|=+|.-.|--.||++|-+.|.+++|.+++.+
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
No 317
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.82 E-value=6.7e+02 Score=23.52 Aligned_cols=65 Identities=18% Similarity=0.033 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ 177 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~ 177 (408)
-+-+..+||.+....|.+++|.+.|..+.-+. + .--+--..--+++..||...|.....++-...
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w-------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIKEES-W-------AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-H-------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 45567899999999999999999998875443 2 22222234557888999999999999987654
No 318
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=21.79 E-value=2.9e+02 Score=26.17 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=35.7
Q ss_pred HHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 314 ASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 314 isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
+-+-=.-+|.++||+.||+|+..+-..+-.++.+|-+...
T Consensus 19 lL~~~g~~sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~ 58 (218)
T COG2345 19 LLKKSGPVSADELAEELGISPMAVRRHLDDLEAEGLVEVE 58 (218)
T ss_pred HHhccCCccHHHHHHHhCCCHHHHHHHHHHHHhCcceeee
Confidence 3344567899999999999999999999999999999887
No 319
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=21.75 E-value=83 Score=21.60 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=20.7
Q ss_pred HhccccCChHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy7321 315 SKLYNNISFPELGALLQISAAKAEKIASHMICEG 348 (408)
Q Consensus 315 sk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~g 348 (408)
..++.-.|..++|+.||+|..-+-..+.+.-..|
T Consensus 12 ~l~~~G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 12 RLLREGWSIREIAKRLGVSRSTVYRWIKRYREEG 45 (50)
T ss_dssp HHHHHT--HHHHHHHHTS-HHHHHHHHT------
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHHHccccc
Confidence 3344578899999999999999998888776655
No 320
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=21.75 E-value=1.2e+02 Score=24.64 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=27.0
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
..++-++||..+|+++.++-+.+..+-.+|-+..+
T Consensus 26 ~~l~de~la~~~~l~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 26 GELTDEDLAKKLGLKPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp --B-HHHHHHTT-S-HHHHHHHHHHHHHHSS-EEE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEE
Confidence 46888999999999999999999999999998554
No 321
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=21.72 E-value=1e+02 Score=23.30 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=19.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHH
Q psy7321 319 NNISFPELGALLQISAAKAEKIASH 343 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~ 343 (408)
..-|.++||+.+|+|++++...+..
T Consensus 19 r~Pt~eEiA~~lgis~~~v~~~l~~ 43 (78)
T PF04539_consen 19 REPTDEEIAEELGISVEEVRELLQA 43 (78)
T ss_dssp S--BHHHHHHHHTS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHcccHHHHHHHHHh
Confidence 5678899999999999999988874
No 322
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=21.52 E-value=98 Score=31.03 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=42.7
Q ss_pred HHHHHHhchhhhhhhcch--hhhHHHHHHHHHHHHHHhc---cccCChHHHHHHhCCCHHHHHHHHHHH
Q psy7321 281 QDFAALLKPHQKAITVDG--SSILERAVTEHNLLSASKL---YNNISFPELGALLQISAAKAEKIASHM 344 (408)
Q Consensus 281 ~~F~~~L~~h~~~~~~d~--~~~L~~~ViEhNi~~isk~---Ys~Itl~~La~lLgls~e~~E~~ls~m 344 (408)
.+|++..+.|+.....|+ -..|++.|.+.-+.+|.++ |..+.+ .-.+-+..+|+++|..|.+|
T Consensus 304 ~~fee~~~~q~~~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~~~-~~~Kyikyt~~~le~~l~~L 371 (371)
T PF03081_consen 304 SAFEEIYKAQKTWKVPDPELREELRREIKEKVVPAYRRFYERYRNSQF-NPEKYIKYTPEDLENMLNEL 371 (371)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCSS-SHCCC-SS-HHHHHHHHHTC
T ss_pred HHHHHHHHcCcceecCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCCCCccCHHHHHHHHHcC
Confidence 356666666766555665 3578888999999999998 666777 45566788999999988764
No 323
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=21.49 E-value=1.8e+02 Score=26.06 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcC---ceEEEeccCCcEEEecCCCchhhHH
Q psy7321 306 VTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEG---RMNGYVDQIDSIVHFETREILPSWD 373 (408)
Q Consensus 306 ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~g---rl~akIDqv~giV~F~~~~~l~~W~ 373 (408)
++|-=|.+..++ ++.++|++.++ ++++++..+.++..+= .=.=.|-+++|-..|..+.....|-
T Consensus 2 ~iEAlLF~s~~p---vs~~~La~~l~-~~~~v~~~l~~L~~~y~~~~~gl~l~~~~~~y~l~tk~~~~~~v 68 (159)
T PF04079_consen 2 IIEALLFASGEP---VSIEELAEILG-SEDEVEEALEELQEEYNEEDRGLELVEVGGGYRLQTKPEYAEYV 68 (159)
T ss_dssp HHHHHHHH-SS----B-HHHHHHHCT--HHHHHHHHHHHHHHHHHCT-SEEEEEETTEEEEEE-GGGHHHH
T ss_pred hhHhhHHHcCCC---CCHHHHHHHhC-CHHHHHHHHHHHHHHhccCCCCEEEEEECCEEEEEEhHHHHHHH
Confidence 455555555565 99999999999 9999999988887643 1122555566666665543333343
No 324
>KOG2072|consensus
Probab=21.24 E-value=1.1e+03 Score=26.96 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhhc-CChHHHHHHHHHhcccc--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHH
Q psy7321 147 LQTYMKIARLYLED-EDPVQAEAFINRASLLQ--AETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAE 223 (408)
Q Consensus 147 le~~L~i~RL~L~~-~D~~~A~~~i~Ka~~~~--~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e 223 (408)
+.|.-+--|-||+. .+..+.+..+.-+...- ++ -.-..+..| -++++.-|.-++.++.|........+...+
T Consensus 152 lkFLWeSYR~vLdlLRNNa~lE~lY~~ia~~aFqFC-LkYqRktEF----RrLCe~LR~HL~~i~k~~nq~~~v~Ln~~E 226 (988)
T KOG2072|consen 152 LKFLWESYRTVLDLLRNNARLEALYHDIARKAFQFC-LKYQRKTEF----RRLCELLRMHLDNINKHQNQSTRVDLNDPE 226 (988)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHhhhHHH----HHHHHHHHHHHHHHHHhhccCcCCCCCCHH
Confidence 33444555666643 45556665543333211 11 112344444 456666677788888887775554444333
Q ss_pred --------HHHHHHHHHHHHHhCCC---CcchhHHHHhhhc-CcccCC-ChhHHHHHHHHHH---hhcCcchHHHHHHHh
Q psy7321 224 --------RITALKSALICTILASA---GQQRSRMLATLFK-DERCQH-LPAYSILEKMYLD---RIIRKSELQDFAALL 287 (408)
Q Consensus 224 --------~~~~L~~av~~~ILa~~---~~~rs~ll~~l~~-d~~~~~-lp~~~~L~k~f~~---~ii~~~~l~~F~~~L 287 (408)
|..-|..+|--.+---+ ..+-.-|+. +.| -|.-.. .-+|..|.+.|.. .++....+..|+...
T Consensus 227 tlql~LDtRf~QLdvAi~lELWQEAyrSiEDIhgLm~-lSKrtPkp~~laNYY~KL~~VF~~sgn~LfHAaAw~k~f~l~ 305 (988)
T KOG2072|consen 227 TLQLYLDTRFQQLDVAIELELWQEAYRSIEDIHGLMK-LSKRTPKPSTLANYYEKLAKVFWKSGNPLFHAAAWLKLFKLY 305 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 22233333321111000 011111111 111 121111 2357788888853 344434444444443
Q ss_pred chhhhhhhcchhhhHHHHHHHHHHHHHHhc--c------ccCCh--------HHHHHHhCCC-HHHHHHHHHHHHhcCce
Q psy7321 288 KPHQKAITVDGSSILERAVTEHNLLSASKL--Y------NNISF--------PELGALLQIS-AAKAEKIASHMICEGRM 350 (408)
Q Consensus 288 ~~h~~~~~~d~~~~L~~~ViEhNi~~isk~--Y------s~Itl--------~~La~lLgls-~e~~E~~ls~mI~~grl 350 (408)
..-.+-++.|.....-.+|+ |-++|-| . ..|.+ -+||.|||++ ++-=..+|..+|..|.+
T Consensus 306 k~~~K~~Tqde~q~~as~Vl---LaaLSIP~~~~~~~~~r~~e~e~~~~ek~~rla~LL~L~~~PTR~~ll~e~v~~gV~ 382 (988)
T KOG2072|consen 306 KNMNKNLTQDELQRMASRVL---LAALSIPIPDARSDSARLIEIEDIGKEKNLRLANLLGLPAPPTRKGLLKEAVREGVL 382 (988)
T ss_pred HHhcccccHHHHHHHHHHHH---HHHhcCCCCCcccccccccccccchhhHHHHHHHHhCCCCCccHHHHHHHHHHhccH
Confidence 33333344433222222222 2223333 1 11222 3689999997 45567788999997755
Q ss_pred EE
Q psy7321 351 NG 352 (408)
Q Consensus 351 ~a 352 (408)
.+
T Consensus 383 ~~ 384 (988)
T KOG2072|consen 383 SK 384 (988)
T ss_pred hh
Confidence 43
No 325
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=20.70 E-value=2e+02 Score=25.58 Aligned_cols=35 Identities=9% Similarity=0.089 Sum_probs=30.3
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
---.++..+||+.|++++.-+=+++.+|-..|-+.
T Consensus 21 ~~~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~ 55 (154)
T COG1321 21 EKGFARTKDIAERLKVSPPSVTEMLKRLERLGLVE 55 (154)
T ss_pred ccCcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeE
Confidence 34568899999999999999999999999988653
No 326
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=20.55 E-value=6.1e+02 Score=23.02 Aligned_cols=36 Identities=11% Similarity=0.011 Sum_probs=32.3
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEe
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYV 354 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akI 354 (408)
.-+|-++||..||++...+-+.+.++-.+|-+..+-
T Consensus 35 g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 35 GEVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEee
Confidence 358999999999999999999999999999987543
No 327
>KOG3617|consensus
Probab=20.43 E-value=3.9e+02 Score=30.64 Aligned_cols=104 Identities=21% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcc-------HHHHHHHHhcCccccccccCCchhH-------HHHHHHHHHHhhhcCChHHHHHHHHH
Q psy7321 107 SIRQHLALIYEREEN-------WRDAANVLVGIPLETGQKQYSVDYK-------LQTYMKIARLYLEDEDPVQAEAFINR 172 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd-------~~eAa~~L~~i~~Et~~~~~~~~~K-------le~~L~i~RL~L~~~D~~~A~~~i~K 172 (408)
.|-..-+.+.|+.|+ |+.|-+.+.-+++-|.+|.++.... ...+-.++|.|=-.+|+.+|-.+..|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Q ss_pred h---ccccccCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy7321 173 A---SLLQAETKDETLQVHYKVCYARVLDY-RRKFIEAAQRYSEL 213 (408)
Q Consensus 173 a---~~~~~~~~~~~lk~~y~~~~a~i~~~-~r~f~eAa~~y~e~ 213 (408)
| ++.+--.+..+++-+ ++..-++. .++...||++|.|.
T Consensus 993 AqafsnAIRlcKEnd~~d~---L~nlal~s~~~d~v~aArYyEe~ 1034 (1416)
T KOG3617|consen 993 AQAFSNAIRLCKENDMKDR---LANLALMSGGSDLVSAARYYEEL 1034 (1416)
T ss_pred HHHHHHHHHHHHhcCHHHH---HHHHHhhcCchhHHHHHHHHHHc
No 328
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=20.36 E-value=2.1e+02 Score=18.78 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=23.9
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
+...+...+|+.+|+|...+-..+.+..
T Consensus 24 ~~~~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 24 GEGLSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred hcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3889999999999999999888777654
No 329
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=20.16 E-value=2.7e+02 Score=22.43 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=36.8
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
-|+-||..-+++.|++...-|-..|..+-..|.|.-- .+..+.
T Consensus 38 ~~K~ITps~lserlkI~~SlAr~~Lr~L~~kG~Ik~V-~~~~~q 80 (86)
T PRK09334 38 KEKIVTPYTLASKYGIKISVAKKVLRELEKRGVLVLY-SKNRRT 80 (86)
T ss_pred cCcEEcHHHHHHHhcchHHHHHHHHHHHHHCCCEEEE-ecCCCe
Confidence 3999999999999999999999999999999998654 344343
No 330
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=20.12 E-value=1.1e+03 Score=25.23 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=54.1
Q ss_pred CCchhHHHHHHHHHHHhhhcCChHHHHHH---HHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7321 141 YSVDYKLQTYMKIARLYLEDEDPVQAEAF---INRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKP 217 (408)
Q Consensus 141 ~~~~~Kle~~L~i~RL~L~~~D~~~A~~~---i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~ 217 (408)
++.++ +.-+|.-+......|||.++..| +.|+.+ +... +.+.|..+....+|.+|..++.++-..
T Consensus 457 i~e~e-ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-----S~~~-----~RLlGl~l~e~k~Y~eA~~~l~~LP~n- 524 (549)
T PF07079_consen 457 ISEEE-IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-----SPQA-----YRLLGLCLMENKRYQEAWEYLQKLPPN- 524 (549)
T ss_pred ccHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----cHHH-----HHHHHHHHHHHhhHHHHHHHHHhCCCc-
Confidence 34445 77789999999999999999888 445544 1222 235577778899999999999998532
Q ss_pred CCChHHH-HHHHHHHHHH
Q psy7321 218 IIDEAER-ITALKSALIC 234 (408)
Q Consensus 218 ~i~~~e~-~~~L~~av~~ 234 (408)
++-+ .++-+.+++|
T Consensus 525 ---~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 525 ---ERMRDSKVQKALALC 539 (549)
T ss_pred ---hhhHHHHHHHHHHHH
Confidence 2212 3444555666
No 331
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=20.07 E-value=1.5e+02 Score=21.80 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.3
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHH
Q psy7321 320 NISFPELGALLQISAAKAEKIASHM 344 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~m 344 (408)
.+++++||+.+|+|+..+.....+.
T Consensus 1 ~~~~~~la~~~~~s~~~l~~~f~~~ 25 (84)
T smart00342 1 PLTLEDLAEALGMSPRHLQRLFKKE 25 (84)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3789999999999999888877765
Done!