Query psy7321
Match_columns 408
No_of_seqs 262 out of 833
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:49:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 100.0 2.4E-66 8.1E-71 534.1 16.3 351 44-395 56-438 (445)
2 3txn_A 26S proteasome regulato 100.0 1.6E-37 5.3E-42 313.6 31.6 345 27-389 22-385 (394)
3 4b4t_R RPN7, 26S proteasome re 100.0 5.2E-39 1.8E-43 329.0 15.0 285 94-390 119-421 (429)
4 4b4t_Q 26S proteasome regulato 100.0 1.5E-29 5.1E-34 252.3 27.2 314 67-390 96-426 (434)
5 4b4t_S RPN3, 26S proteasome re 99.9 4.2E-26 1.4E-30 235.1 14.7 267 105-384 180-472 (523)
6 4b4t_O 26S proteasome regulato 99.9 1.5E-23 5E-28 212.3 20.3 273 112-389 82-390 (393)
7 1ufm_A COP9 complex subunit 4; 99.8 1.2E-21 4E-26 155.8 6.4 75 295-369 5-79 (84)
8 3t5x_A PCI domain-containing p 99.6 4.9E-15 1.7E-19 136.7 12.8 174 184-370 11-197 (203)
9 3t5v_B Nuclear mRNA export pro 99.4 1.3E-12 4.4E-17 133.9 16.0 247 120-376 140-443 (455)
10 4b0z_A RPN12, 26S proteasome r 98.5 3.5E-06 1.2E-10 78.6 15.2 203 152-365 12-228 (229)
11 3chm_A COP9 signalosome comple 98.0 6.3E-05 2.1E-09 66.9 13.1 129 227-365 25-156 (169)
12 3ro3_A PINS homolog, G-protein 97.0 0.0039 1.3E-07 50.8 10.0 111 104-215 7-117 (164)
13 3ro3_A PINS homolog, G-protein 97.0 0.0067 2.3E-07 49.4 11.0 110 105-215 48-157 (164)
14 3ro2_A PINS homolog, G-protein 96.4 0.14 4.8E-06 46.6 16.7 110 105-215 122-251 (338)
15 3sf4_A G-protein-signaling mod 96.3 0.13 4.4E-06 48.8 16.1 110 105-215 226-335 (406)
16 3sf4_A G-protein-signaling mod 96.2 0.17 5.9E-06 47.9 16.5 111 104-215 185-295 (406)
17 3gw4_A Uncharacterized protein 96.1 0.043 1.5E-06 47.0 10.8 110 105-215 25-135 (203)
18 3ro2_A PINS homolog, G-protein 96.1 0.028 9.6E-07 51.4 10.1 111 104-215 181-291 (338)
19 4a1s_A PINS, partner of inscut 96.1 0.19 6.6E-06 48.1 16.6 70 145-214 221-290 (411)
20 3gw4_A Uncharacterized protein 95.9 0.042 1.4E-06 47.1 10.0 109 105-215 65-175 (203)
21 1elr_A TPR2A-domain of HOP; HO 95.9 0.081 2.8E-06 41.3 10.7 105 105-216 3-108 (131)
22 1qqe_A Vesicular transport pro 95.9 0.24 8.1E-06 46.2 15.6 110 105-216 76-187 (292)
23 4gcn_A Protein STI-1; structur 95.8 0.07 2.4E-06 43.5 10.2 105 104-215 6-111 (127)
24 4a1s_A PINS, partner of inscut 95.7 0.035 1.2E-06 53.5 9.5 111 104-215 221-331 (411)
25 2ifu_A Gamma-SNAP; membrane fu 95.4 0.25 8.7E-06 46.3 14.1 109 104-215 74-183 (307)
26 3u3w_A Transcriptional activat 95.3 0.77 2.6E-05 42.4 16.8 109 105-214 154-264 (293)
27 2ifu_A Gamma-SNAP; membrane fu 95.2 0.18 6.2E-06 47.3 12.2 113 105-219 115-227 (307)
28 2dba_A Smooth muscle cell asso 95.2 0.21 7.1E-06 40.1 11.0 101 106-216 28-128 (148)
29 3q15_A PSP28, response regulat 95.1 0.45 1.5E-05 45.7 15.1 111 103-215 179-289 (378)
30 4ga2_A E3 SUMO-protein ligase 95.1 0.2 6.9E-06 41.8 10.9 93 111-216 2-94 (150)
31 3q15_A PSP28, response regulat 95.0 0.15 5.1E-06 49.1 11.3 113 102-215 137-250 (378)
32 2qfc_A PLCR protein; TPR, HTH, 95.0 0.21 7.3E-06 46.3 12.0 111 104-215 113-224 (293)
33 3ulq_A Response regulator aspa 95.0 0.13 4.6E-06 49.4 10.9 112 102-215 139-252 (383)
34 3nf1_A KLC 1, kinesin light ch 94.9 0.062 2.1E-06 48.9 7.7 110 105-215 26-139 (311)
35 3nf1_A KLC 1, kinesin light ch 94.7 0.15 5.1E-06 46.3 9.8 110 105-215 110-223 (311)
36 3ulq_A Response regulator aspa 94.6 0.15 5.3E-06 48.9 10.1 112 102-215 180-292 (383)
37 3u3w_A Transcriptional activat 94.5 0.25 8.6E-06 45.8 11.1 111 104-215 113-224 (293)
38 2xev_A YBGF; tetratricopeptide 94.4 0.22 7.4E-06 39.3 9.0 100 110-216 6-105 (129)
39 3edt_B KLC 2, kinesin light ch 94.3 0.16 5.6E-06 45.2 8.9 110 105-215 42-155 (283)
40 1elw_A TPR1-domain of HOP; HOP 94.1 0.62 2.1E-05 35.2 10.9 99 105-216 3-101 (118)
41 3edt_B KLC 2, kinesin light ch 94.0 0.31 1.1E-05 43.2 10.2 110 105-215 84-197 (283)
42 2vyi_A SGTA protein; chaperone 94.0 0.56 1.9E-05 36.1 10.6 101 103-216 9-109 (131)
43 4gco_A Protein STI-1; structur 94.0 0.42 1.4E-05 38.7 10.1 104 100-216 7-110 (126)
44 4b4t_Q 26S proteasome regulato 93.9 0.14 4.8E-06 49.6 8.2 109 106-215 95-203 (434)
45 3sz7_A HSC70 cochaperone (SGT) 93.8 0.36 1.2E-05 40.3 9.7 99 105-216 10-108 (164)
46 2qfc_A PLCR protein; TPR, HTH, 93.7 0.32 1.1E-05 45.0 10.0 104 110-214 79-182 (293)
47 1qqe_A Vesicular transport pro 93.7 0.28 9.4E-06 45.7 9.6 107 107-215 38-146 (292)
48 4ga2_A E3 SUMO-protein ligase 93.5 0.15 5E-06 42.7 6.7 98 102-212 27-124 (150)
49 2lni_A Stress-induced-phosphop 93.4 0.34 1.2E-05 37.8 8.4 96 107-215 17-112 (133)
50 3upv_A Heat shock protein STI1 93.4 0.71 2.4E-05 36.4 10.3 98 105-215 3-100 (126)
51 1a17_A Serine/threonine protei 93.3 0.72 2.5E-05 37.5 10.5 100 104-216 11-110 (166)
52 3uq3_A Heat shock protein STI1 93.2 0.38 1.3E-05 42.2 9.2 104 105-216 4-108 (258)
53 3mv2_B Coatomer subunit epsilo 93.2 0.29 1E-05 47.3 9.0 100 110-217 104-208 (310)
54 3vtx_A MAMA; tetratricopeptide 93.1 0.89 3E-05 38.2 11.2 99 105-216 4-102 (184)
55 2fbn_A 70 kDa peptidylprolyl i 92.9 0.96 3.3E-05 38.9 11.2 106 105-216 37-151 (198)
56 3as5_A MAMA; tetratricopeptide 92.8 1.5 5E-05 35.9 11.9 99 105-216 7-105 (186)
57 1na0_A Designed protein CTPR3; 92.6 0.82 2.8E-05 34.8 9.4 98 106-216 9-106 (125)
58 1hh8_A P67PHOX, NCF-2, neutrop 92.5 0.89 3.1E-05 39.0 10.5 103 107-216 38-150 (213)
59 3qky_A Outer membrane assembly 92.4 1.4 4.9E-05 39.5 12.2 104 106-216 15-126 (261)
60 4i17_A Hypothetical protein; T 92.3 2.2 7.5E-05 37.2 12.9 100 108-216 44-146 (228)
61 2ho1_A Type 4 fimbrial biogene 92.2 2.5 8.5E-05 37.0 13.3 97 108-215 107-203 (252)
62 3q49_B STIP1 homology and U bo 92.2 0.93 3.2E-05 35.8 9.5 97 106-215 9-105 (137)
63 3uq3_A Heat shock protein STI1 91.9 0.55 1.9E-05 41.1 8.5 108 107-215 39-167 (258)
64 3as5_A MAMA; tetratricopeptide 91.8 0.9 3.1E-05 37.2 9.3 94 108-214 78-171 (186)
65 3rkv_A Putative peptidylprolyl 91.7 0.88 3E-05 37.7 9.2 106 105-216 10-126 (162)
66 1wi9_A Protein C20ORF116 homol 91.7 0.48 1.6E-05 35.6 6.4 51 315-365 16-66 (72)
67 1hz4_A MALT regulatory protein 91.6 1 3.4E-05 42.6 10.5 109 105-215 92-202 (373)
68 2l6j_A TPR repeat-containing p 91.4 1.4 4.9E-05 33.2 9.5 65 106-177 4-68 (111)
69 1rz4_A Eukaryotic translation 91.4 0.99 3.4E-05 41.5 9.8 84 273-365 107-191 (226)
70 2xcb_A PCRH, regulatory protei 91.3 1.2 4.2E-05 36.1 9.5 98 105-215 17-114 (142)
71 1hxi_A PEX5, peroxisome target 91.1 2.2 7.5E-05 34.0 10.7 94 110-216 21-114 (121)
72 1hz4_A MALT regulatory protein 91.1 1.6 5.6E-05 41.2 11.5 110 104-215 12-121 (373)
73 2ho1_A Type 4 fimbrial biogene 91.1 0.95 3.3E-05 39.8 9.2 99 107-216 72-170 (252)
74 2kck_A TPR repeat; tetratricop 91.1 0.29 9.9E-06 36.9 5.0 96 110-216 10-106 (112)
75 3qky_A Outer membrane assembly 91.1 1.1 3.6E-05 40.3 9.7 107 106-216 52-177 (261)
76 2vq2_A PILW, putative fimbrial 90.9 1.7 5.9E-05 36.9 10.6 98 108-216 78-176 (225)
77 3mkr_A Coatomer subunit epsilo 90.9 1 3.4E-05 42.1 9.6 94 107-216 102-195 (291)
78 3ieg_A DNAJ homolog subfamily 90.9 2.9 9.9E-05 38.2 12.7 99 109-216 237-335 (359)
79 2fo7_A Synthetic consensus TPR 90.9 1.1 3.9E-05 34.2 8.5 94 109-215 4-97 (136)
80 2fo7_A Synthetic consensus TPR 90.9 1.7 5.7E-05 33.2 9.5 95 108-215 37-131 (136)
81 2vgx_A Chaperone SYCD; alterna 90.7 1.4 4.9E-05 36.5 9.5 98 105-215 20-117 (148)
82 3n71_A Histone lysine methyltr 90.6 2.7 9.4E-05 42.8 13.2 101 112-214 315-420 (490)
83 3gyz_A Chaperone protein IPGC; 89.9 1.9 6.6E-05 36.3 9.7 102 102-216 32-133 (151)
84 4f3v_A ESX-1 secretion system 89.9 2.5 8.7E-05 40.0 11.4 103 103-217 99-201 (282)
85 1a17_A Serine/threonine protei 89.9 2.9 0.0001 33.7 10.6 97 106-213 47-143 (166)
86 3n71_A Histone lysine methyltr 89.8 1.8 6.1E-05 44.3 11.0 108 105-214 350-462 (490)
87 3u4t_A TPR repeat-containing p 89.6 1 3.6E-05 40.0 8.2 98 109-216 6-103 (272)
88 4eqf_A PEX5-related protein; a 89.4 2.4 8.2E-05 39.7 11.0 106 106-216 133-242 (365)
89 3u4t_A TPR repeat-containing p 89.3 1 3.5E-05 40.0 7.9 98 109-216 40-137 (272)
90 1qgp_A Protein (double strande 89.2 1.4 4.9E-05 33.2 7.4 38 320-357 31-68 (77)
91 1p5q_A FKBP52, FK506-binding p 89.1 1.2 4.1E-05 42.5 8.7 109 102-216 143-259 (336)
92 1ihg_A Cyclophilin 40; ppiase 89.0 1.7 5.7E-05 42.4 9.8 106 104-216 221-336 (370)
93 1hh8_A P67PHOX, NCF-2, neutrop 89.0 3.6 0.00012 35.1 11.0 92 109-216 9-100 (213)
94 2q7f_A YRRB protein; TPR, prot 89.0 2.2 7.5E-05 36.9 9.7 93 109-214 94-186 (243)
95 1xnf_A Lipoprotein NLPI; TPR, 88.6 2 6.8E-05 38.0 9.3 100 104-216 41-140 (275)
96 4i17_A Hypothetical protein; T 88.6 7.9 0.00027 33.4 13.2 70 106-176 76-146 (228)
97 2q7f_A YRRB protein; TPR, prot 88.5 2 7E-05 37.1 9.2 98 106-216 57-154 (243)
98 3hym_B Cell division cycle pro 88.5 2.4 8.1E-05 38.5 9.9 105 106-216 193-299 (330)
99 2e2e_A Formate-dependent nitri 88.5 3.8 0.00013 34.0 10.6 97 107-216 45-144 (177)
100 2vq2_A PILW, putative fimbrial 88.4 1.9 6.6E-05 36.6 8.8 97 108-215 44-141 (225)
101 3hym_B Cell division cycle pro 88.3 1.2 4.1E-05 40.5 7.8 96 107-215 126-221 (330)
102 4b4t_T 26S proteasome regulato 88.3 7.3 0.00025 36.7 13.3 132 224-365 102-237 (274)
103 3mkr_A Coatomer subunit epsilo 88.1 4.1 0.00014 37.8 11.6 99 107-216 131-229 (291)
104 3ieg_A DNAJ homolog subfamily 88.1 3.7 0.00013 37.5 11.1 106 107-216 189-301 (359)
105 1xn7_A Hypothetical protein YH 87.6 0.86 2.9E-05 34.7 5.2 39 313-351 9-47 (78)
106 2gw1_A Mitochondrial precursor 87.4 3.5 0.00012 40.1 11.0 100 104-217 4-103 (514)
107 4eqf_A PEX5-related protein; a 87.3 2.6 9E-05 39.4 9.7 99 106-215 177-275 (365)
108 2xpi_A Anaphase-promoting comp 87.0 1.9 6.6E-05 43.3 9.0 104 107-216 476-579 (597)
109 1elr_A TPR2A-domain of HOP; HO 86.8 3.6 0.00012 31.4 8.8 70 107-176 39-108 (131)
110 3qww_A SET and MYND domain-con 86.7 5.4 0.00019 39.9 12.1 95 118-214 310-409 (433)
111 2pl2_A Hypothetical conserved 86.3 3.5 0.00012 36.1 9.4 95 108-216 75-180 (217)
112 2xpi_A Anaphase-promoting comp 86.3 4.1 0.00014 40.8 11.1 95 108-215 409-503 (597)
113 2yhc_A BAMD, UPF0169 lipoprote 86.3 12 0.0004 32.7 12.9 106 106-216 41-176 (225)
114 2yhc_A BAMD, UPF0169 lipoprote 86.2 6.9 0.00024 34.2 11.4 102 108-216 6-125 (225)
115 3vtx_A MAMA; tetratricopeptide 86.1 3.7 0.00013 34.2 9.2 96 107-215 40-135 (184)
116 3ma5_A Tetratricopeptide repea 85.9 3.5 0.00012 31.3 8.2 64 106-176 7-70 (100)
117 1fch_A Peroxisomal targeting s 85.8 3.7 0.00013 38.1 9.8 95 107-214 218-312 (368)
118 1kt0_A FKBP51, 51 kDa FK506-bi 85.7 2.4 8.1E-05 42.4 8.8 108 103-216 265-380 (457)
119 2c2l_A CHIP, carboxy terminus 85.4 3.7 0.00013 37.8 9.5 96 107-215 5-100 (281)
120 3cv0_A Peroxisome targeting si 85.4 3.1 0.00011 37.6 8.8 95 107-214 173-267 (327)
121 2xev_A YBGF; tetratricopeptide 85.2 2.7 9.2E-05 32.6 7.3 67 106-176 39-105 (129)
122 2y4t_A DNAJ homolog subfamily 85.2 4.5 0.00015 38.7 10.4 107 106-215 211-323 (450)
123 3k9i_A BH0479 protein; putativ 85.2 1.9 6.7E-05 33.6 6.5 89 118-216 2-90 (117)
124 2k02_A Ferrous iron transport 85.1 0.94 3.2E-05 35.4 4.3 42 312-353 8-49 (87)
125 2y4t_A DNAJ homolog subfamily 85.0 4.7 0.00016 38.6 10.4 99 105-216 25-123 (450)
126 2kat_A Uncharacterized protein 85.0 4.3 0.00015 31.2 8.4 63 107-176 20-82 (115)
127 3cv0_A Peroxisome targeting si 84.8 3.1 0.0001 37.6 8.5 101 106-213 206-312 (327)
128 3urz_A Uncharacterized protein 84.1 6.6 0.00023 34.0 10.1 94 110-216 8-117 (208)
129 1qbj_A Protein (double-strande 83.9 2.2 7.5E-05 32.7 5.9 45 309-353 13-60 (81)
130 2pl2_A Hypothetical conserved 83.9 12 0.0004 32.6 11.7 96 108-216 7-113 (217)
131 3qwp_A SET and MYND domain-con 83.8 6.6 0.00023 39.1 11.1 97 116-214 297-398 (429)
132 2gw1_A Mitochondrial precursor 83.7 4.8 0.00016 39.1 9.9 102 108-216 374-478 (514)
133 3fp2_A TPR repeat-containing p 83.5 4.1 0.00014 40.0 9.4 97 106-215 310-406 (537)
134 1ub9_A Hypothetical protein PH 83.2 2.8 9.6E-05 32.0 6.5 36 319-354 29-64 (100)
135 1xnf_A Lipoprotein NLPI; TPR, 83.2 6 0.00021 34.7 9.6 95 107-215 78-172 (275)
136 1sfx_A Conserved hypothetical 83.0 13 0.00046 28.2 10.5 39 318-356 32-70 (109)
137 1p5q_A FKBP52, FK506-binding p 82.8 12 0.0004 35.4 12.1 99 103-214 193-292 (336)
138 3fp2_A TPR repeat-containing p 82.0 6.2 0.00021 38.7 10.0 102 101-216 238-339 (537)
139 2vsy_A XCC0866; transferase, g 81.7 6.1 0.00021 40.0 10.1 94 108-214 25-118 (568)
140 4abn_A Tetratricopeptide repea 81.1 8.1 0.00028 38.5 10.6 96 106-215 137-249 (474)
141 3sz7_A HSC70 cochaperone (SGT) 81.1 10 0.00034 31.1 9.7 65 106-177 45-109 (164)
142 1fch_A Peroxisomal targeting s 80.9 3.8 0.00013 38.0 7.6 99 106-211 251-354 (368)
143 4gyw_A UDP-N-acetylglucosamine 80.8 18 0.00061 38.6 13.7 97 106-215 9-105 (723)
144 4abn_A Tetratricopeptide repea 80.8 32 0.0011 34.1 14.9 98 105-216 101-208 (474)
145 4b4t_P 26S proteasome regulato 80.5 32 0.0011 34.3 14.7 89 125-214 115-204 (445)
146 2kck_A TPR repeat; tetratricop 80.4 5.7 0.0002 29.2 7.2 65 107-176 41-106 (112)
147 4gcn_A Protein STI-1; structur 79.9 8.4 0.00029 30.6 8.5 67 108-175 44-111 (127)
148 2vyi_A SGTA protein; chaperone 79.3 15 0.00052 27.5 9.6 63 107-176 47-109 (131)
149 1na3_A Designed protein CTPR2; 79.1 7.7 0.00026 27.7 7.4 64 106-176 9-72 (91)
150 1na3_A Designed protein CTPR2; 78.7 6.8 0.00023 28.0 7.0 70 141-216 3-72 (91)
151 3k9i_A BH0479 protein; putativ 78.6 5.5 0.00019 30.8 6.8 66 104-176 25-90 (117)
152 3urz_A Uncharacterized protein 78.3 25 0.00084 30.2 11.7 96 106-214 54-151 (208)
153 2v5f_A Prolyl 4-hydroxylase su 78.1 10 0.00035 29.2 8.2 67 109-176 8-75 (104)
154 2if4_A ATFKBP42; FKBP-like, al 78.1 4.3 0.00015 38.6 7.1 107 104-216 177-293 (338)
155 3qou_A Protein YBBN; thioredox 77.9 17 0.00058 33.3 11.0 96 107-216 118-214 (287)
156 4b8x_A SCO5413, possible MARR- 77.5 17 0.00058 30.1 9.9 67 281-359 22-90 (147)
157 2jt1_A PEFI protein; solution 76.9 3.9 0.00013 30.9 5.1 33 320-352 24-56 (77)
158 3upv_A Heat shock protein STI1 75.6 8.6 0.00029 29.8 7.2 64 106-176 38-101 (126)
159 3qww_A SET and MYND domain-con 75.3 3.9 0.00013 41.0 6.2 72 105-177 339-412 (433)
160 2vsy_A XCC0866; transferase, g 75.1 11 0.00038 38.1 9.6 97 106-215 57-156 (568)
161 3qwp_A SET and MYND domain-con 75.0 4 0.00014 40.8 6.1 72 105-177 328-401 (429)
162 2fbn_A 70 kDa peptidylprolyl i 74.8 14 0.00049 31.2 9.0 89 106-207 88-176 (198)
163 4gco_A Protein STI-1; structur 74.7 13 0.00044 29.5 8.2 73 107-188 48-120 (126)
164 1kt0_A FKBP51, 51 kDa FK506-bi 74.6 21 0.00073 35.3 11.4 99 103-214 314-413 (457)
165 2kc7_A BFR218_protein; tetratr 73.9 15 0.0005 27.0 7.9 60 110-176 4-64 (99)
166 2r5s_A Uncharacterized protein 73.7 8.9 0.0003 32.0 7.2 103 105-221 39-143 (176)
167 4g1t_A Interferon-induced prot 73.6 31 0.0011 33.1 12.1 109 106-216 51-167 (472)
168 1w3b_A UDP-N-acetylglucosamine 73.4 19 0.00065 33.7 10.3 98 106-216 237-334 (388)
169 1w3b_A UDP-N-acetylglucosamine 73.1 30 0.001 32.3 11.6 92 111-215 4-95 (388)
170 1tbx_A ORF F-93, hypothetical 73.0 14 0.00049 28.2 7.7 47 318-364 20-70 (99)
171 3qou_A Protein YBBN; thioredox 72.7 41 0.0014 30.5 12.2 98 106-216 151-248 (287)
172 2htj_A P fimbrial regulatory p 72.4 11 0.00038 27.9 6.7 34 319-352 13-46 (81)
173 2xcb_A PCRH, regulatory protei 72.3 18 0.00062 28.8 8.7 64 107-177 53-116 (142)
174 1ku9_A Hypothetical protein MJ 72.2 31 0.0011 27.7 10.2 41 319-359 40-80 (152)
175 3mv2_B Coatomer subunit epsilo 72.1 38 0.0013 32.3 12.0 137 105-256 135-285 (310)
176 4gyw_A UDP-N-acetylglucosamine 72.0 12 0.00042 39.9 9.4 96 107-215 44-139 (723)
177 3tgn_A ADC operon repressor AD 71.9 24 0.00083 28.4 9.4 52 308-360 40-91 (146)
178 3txn_A 26S proteasome regulato 71.7 29 0.001 34.2 11.4 106 108-215 21-167 (394)
179 2lni_A Stress-induced-phosphop 71.6 7.9 0.00027 29.5 6.0 63 107-176 51-113 (133)
180 3rkv_A Putative peptidylprolyl 71.1 28 0.00096 28.2 9.7 67 103-176 60-126 (162)
181 2oqg_A Possible transcriptiona 70.8 21 0.00073 27.7 8.5 37 319-355 33-69 (114)
182 2y75_A HTH-type transcriptiona 70.8 13 0.00044 30.1 7.3 48 319-366 25-72 (129)
183 2a61_A Transcriptional regulat 70.6 32 0.0011 27.6 9.8 43 318-360 45-87 (145)
184 2heo_A Z-DNA binding protein 1 70.5 9.9 0.00034 27.5 5.8 34 319-352 24-57 (67)
185 3q49_B STIP1 homology and U bo 70.4 25 0.00085 27.1 8.9 63 107-176 44-106 (137)
186 1elw_A TPR1-domain of HOP; HOP 70.2 15 0.00052 26.9 7.3 65 146-216 3-67 (118)
187 2hr2_A Hypothetical protein; a 69.8 44 0.0015 28.6 10.8 112 102-215 7-130 (159)
188 2cfx_A HTH-type transcriptiona 69.6 11 0.00038 31.2 6.8 41 317-357 16-59 (144)
189 1ihg_A Cyclophilin 40; ppiase 69.0 21 0.00072 34.4 9.6 96 101-209 268-363 (370)
190 1jgs_A Multiple antibiotic res 68.8 40 0.0014 26.7 10.0 42 318-359 46-87 (138)
191 1ouv_A Conserved hypothetical 68.8 18 0.00061 32.1 8.5 94 106-216 6-107 (273)
192 3ffl_A Anaphase-promoting comp 68.2 11 0.00037 32.9 6.5 69 147-215 20-91 (167)
193 2fbh_A Transcriptional regulat 68.2 38 0.0013 27.0 9.8 44 316-359 48-91 (146)
194 1wao_1 Serine/threonine protei 68.1 4 0.00014 41.0 4.3 96 106-212 40-135 (477)
195 2p5v_A Transcriptional regulat 68.0 12 0.00039 31.7 6.7 41 317-357 21-64 (162)
196 2dba_A Smooth muscle cell asso 67.9 19 0.00063 28.0 7.6 70 144-216 25-94 (148)
197 2fbi_A Probable transcriptiona 67.8 31 0.0011 27.4 9.2 43 318-360 48-90 (142)
198 3ma5_A Tetratricopeptide repea 67.4 13 0.00046 27.9 6.4 63 147-215 7-69 (100)
199 4g1t_A Interferon-induced prot 67.2 16 0.00054 35.2 8.4 103 110-216 338-459 (472)
200 2d1h_A ST1889, 109AA long hypo 67.1 37 0.0013 25.6 9.1 41 318-358 34-74 (109)
201 1r7j_A Conserved hypothetical 66.8 39 0.0013 26.1 9.0 42 321-365 21-62 (95)
202 3g3z_A NMB1585, transcriptiona 66.8 31 0.001 27.8 9.0 43 317-359 42-84 (145)
203 2cg4_A Regulatory protein ASNC 66.6 12 0.0004 31.3 6.3 41 317-357 19-62 (152)
204 3bro_A Transcriptional regulat 66.5 38 0.0013 27.0 9.4 40 320-359 50-89 (141)
205 1xd7_A YWNA; structural genomi 66.1 12 0.00042 31.2 6.4 51 314-366 18-68 (145)
206 2r5s_A Uncharacterized protein 66.1 54 0.0018 26.9 14.3 59 110-175 10-68 (176)
207 2gxg_A 146AA long hypothetical 65.9 18 0.0006 29.2 7.3 42 318-359 48-89 (146)
208 3bdd_A Regulatory protein MARR 65.9 15 0.00051 29.5 6.8 42 318-359 43-84 (142)
209 1wao_1 Serine/threonine protei 65.7 15 0.0005 36.8 8.0 95 109-216 9-103 (477)
210 1na0_A Designed protein CTPR3; 65.6 17 0.00059 26.9 6.8 68 142-215 4-71 (125)
211 3r0a_A Putative transcriptiona 65.5 45 0.0015 26.8 9.6 36 321-356 43-78 (123)
212 1z7u_A Hypothetical protein EF 65.4 47 0.0016 26.0 10.0 41 319-359 34-75 (112)
213 3bpv_A Transcriptional regulat 65.2 17 0.0006 28.9 7.0 43 318-360 41-83 (138)
214 2hzt_A Putative HTH-type trans 64.9 46 0.0016 25.8 9.3 42 318-359 25-67 (107)
215 2w25_A Probable transcriptiona 64.8 15 0.00053 30.4 6.8 41 317-357 18-61 (150)
216 3oop_A LIN2960 protein; protei 64.2 22 0.00077 28.6 7.6 42 318-359 49-90 (143)
217 2dbb_A Putative HTH-type trans 64.2 14 0.00047 30.7 6.4 41 317-357 20-63 (151)
218 3lwf_A LIN1550 protein, putati 64.0 16 0.00054 31.4 6.7 47 320-366 44-90 (159)
219 3ech_A MEXR, multidrug resista 63.8 31 0.001 27.8 8.4 44 317-360 48-91 (142)
220 3cdh_A Transcriptional regulat 62.8 44 0.0015 27.2 9.3 52 308-359 45-96 (155)
221 2nyx_A Probable transcriptiona 62.4 36 0.0012 28.4 8.8 42 318-359 57-98 (168)
222 1s3j_A YUSO protein; structura 62.3 31 0.0011 28.0 8.3 42 318-359 49-90 (155)
223 2ia0_A Putative HTH-type trans 62.3 17 0.00057 31.3 6.7 41 317-357 28-71 (171)
224 1ouv_A Conserved hypothetical 61.7 32 0.0011 30.4 8.8 92 108-216 40-143 (273)
225 2nnn_A Probable transcriptiona 61.7 58 0.002 25.7 10.5 42 318-359 50-91 (140)
226 2rdp_A Putative transcriptiona 61.4 44 0.0015 26.9 9.0 42 318-359 54-95 (150)
227 3eco_A MEPR; mutlidrug efflux 61.2 42 0.0014 26.7 8.7 41 319-359 46-86 (139)
228 1yyv_A Putative transcriptiona 60.9 56 0.0019 26.6 9.4 42 318-359 46-88 (131)
229 3k0l_A Repressor protein; heli 60.7 17 0.00059 30.2 6.3 52 308-359 48-99 (162)
230 3cuo_A Uncharacterized HTH-typ 60.1 51 0.0017 24.6 8.9 39 319-357 37-75 (99)
231 2hr3_A Probable transcriptiona 60.0 55 0.0019 26.2 9.3 42 318-359 48-89 (147)
232 3bj6_A Transcriptional regulat 59.9 17 0.00059 29.6 6.1 51 309-359 43-93 (152)
233 2eth_A Transcriptional regulat 59.9 51 0.0018 26.8 9.2 41 319-359 57-97 (154)
234 2frh_A SARA, staphylococcal ac 59.5 17 0.00056 29.3 5.8 41 319-359 52-92 (127)
235 2vgx_A Chaperone SYCD; alterna 59.4 45 0.0015 26.9 8.7 66 145-216 19-84 (148)
236 1lj9_A Transcriptional regulat 59.3 20 0.00068 28.9 6.4 42 318-359 41-82 (144)
237 3s2w_A Transcriptional regulat 59.1 27 0.00094 28.8 7.4 42 318-359 62-103 (159)
238 2v5f_A Prolyl 4-hydroxylase su 58.8 20 0.00067 27.5 5.9 68 148-215 6-74 (104)
239 3t8r_A Staphylococcus aureus C 58.2 23 0.00078 29.6 6.6 47 320-366 28-74 (143)
240 3nrv_A Putative transcriptiona 57.9 17 0.00057 29.6 5.7 52 308-359 42-93 (148)
241 1ylf_A RRF2 family protein; st 57.7 18 0.00062 30.3 5.9 47 319-366 29-75 (149)
242 2l6j_A TPR repeat-containing p 57.6 32 0.0011 25.2 6.9 64 147-216 4-67 (111)
243 2qww_A Transcriptional regulat 57.3 17 0.00059 29.7 5.7 47 318-364 53-104 (154)
244 2pzi_A Probable serine/threoni 57.1 66 0.0022 33.5 11.5 140 117-271 402-545 (681)
245 2kat_A Uncharacterized protein 56.6 38 0.0013 25.5 7.3 63 147-215 19-81 (115)
246 3df8_A Possible HXLR family tr 56.3 21 0.00072 28.3 5.8 35 321-355 43-78 (111)
247 3gyz_A Chaperone protein IPGC; 56.0 65 0.0022 26.5 9.2 64 106-176 70-133 (151)
248 3ffl_A Anaphase-promoting comp 55.9 21 0.00073 31.0 6.1 44 106-157 122-165 (167)
249 3i4p_A Transcriptional regulat 55.0 16 0.00056 30.9 5.2 43 315-357 12-57 (162)
250 2e1c_A Putative HTH-type trans 54.9 16 0.00053 31.5 5.1 41 316-356 37-80 (171)
251 3bja_A Transcriptional regulat 54.6 15 0.00052 29.3 4.8 42 318-359 45-86 (139)
252 2kko_A Possible transcriptiona 54.4 33 0.0011 26.8 6.7 37 319-355 37-73 (108)
253 2cyy_A Putative HTH-type trans 53.6 18 0.00061 30.1 5.2 39 318-356 19-60 (151)
254 3rjv_A Putative SEL1 repeat pr 53.6 32 0.0011 29.7 7.1 93 106-216 18-118 (212)
255 2gau_A Transcriptional regulat 53.4 24 0.00081 30.9 6.3 51 318-372 178-228 (232)
256 2pex_A Transcriptional regulat 53.2 22 0.00077 29.0 5.7 43 317-359 58-100 (153)
257 2fa5_A Transcriptional regulat 53.2 22 0.00074 29.3 5.7 42 318-359 61-102 (162)
258 3hsr_A HTH-type transcriptiona 52.8 19 0.00066 29.1 5.2 52 308-359 38-89 (140)
259 3cjn_A Transcriptional regulat 51.8 28 0.00095 28.7 6.2 42 318-359 64-105 (162)
260 1y0u_A Arsenical resistance op 51.6 33 0.0011 26.0 6.1 44 319-366 42-85 (96)
261 2v79_A DNA replication protein 51.4 65 0.0022 26.6 8.3 43 318-360 49-93 (135)
262 4esf_A PADR-like transcription 51.3 91 0.0031 24.8 9.8 67 331-397 41-115 (117)
263 3dv8_A Transcriptional regulat 51.2 26 0.0009 30.1 6.2 50 319-372 168-217 (220)
264 4hbl_A Transcriptional regulat 51.2 17 0.00058 29.8 4.6 56 309-364 44-102 (149)
265 3f3x_A Transcriptional regulat 51.1 76 0.0026 25.3 8.7 42 318-360 49-90 (144)
266 1i1g_A Transcriptional regulat 51.0 21 0.00073 29.0 5.2 35 318-352 16-50 (141)
267 2kc7_A BFR218_protein; tetratr 51.0 40 0.0014 24.4 6.4 61 151-216 4-64 (99)
268 4f3v_A ESX-1 secretion system 50.9 1.3E+02 0.0045 28.0 11.3 99 108-216 137-237 (282)
269 1ucr_A Protein DSVD; dissimila 50.8 17 0.00057 27.5 3.9 35 317-351 18-53 (78)
270 2ond_A Cleavage stimulation fa 50.7 61 0.0021 29.5 8.9 98 107-216 100-198 (308)
271 3deu_A Transcriptional regulat 50.6 49 0.0017 27.7 7.6 42 318-359 66-107 (166)
272 1hxi_A PEX5, peroxisome target 50.5 19 0.00066 28.1 4.7 63 106-175 51-113 (121)
273 2pn6_A ST1022, 150AA long hypo 50.4 26 0.00088 28.9 5.7 41 317-357 14-57 (150)
274 2if4_A ATFKBP42; FKBP-like, al 49.8 23 0.0008 33.3 6.0 97 107-216 231-328 (338)
275 2f2e_A PA1607; transcription f 48.7 75 0.0026 26.3 8.4 42 318-359 35-76 (146)
276 3jth_A Transcription activator 48.7 41 0.0014 25.4 6.3 37 319-355 35-71 (98)
277 4ev0_A Transcription regulator 48.6 12 0.00041 32.3 3.4 52 318-373 161-212 (216)
278 3nqo_A MARR-family transcripti 48.6 80 0.0027 27.0 8.9 42 318-359 55-96 (189)
279 3k69_A Putative transcription 48.5 29 0.001 29.6 5.8 48 319-366 27-74 (162)
280 2e2e_A Formate-dependent nitri 48.4 1E+02 0.0035 24.8 9.3 87 117-216 21-110 (177)
281 2bv6_A MGRA, HTH-type transcri 47.9 23 0.0008 28.4 4.9 42 318-359 49-90 (142)
282 1r1t_A Transcriptional repress 47.8 94 0.0032 24.8 8.6 37 319-355 58-94 (122)
283 2qvo_A Uncharacterized protein 47.8 42 0.0015 25.3 6.2 45 320-364 30-74 (95)
284 3e6m_A MARR family transcripti 47.5 23 0.0008 29.3 5.0 42 318-359 65-106 (161)
285 3d0s_A Transcriptional regulat 46.7 27 0.00093 30.3 5.5 50 319-372 176-225 (227)
286 2zcw_A TTHA1359, transcription 46.6 23 0.0008 30.2 5.0 49 319-371 145-193 (202)
287 3f6o_A Probable transcriptiona 46.1 32 0.0011 27.3 5.4 37 319-355 30-66 (118)
288 2pg4_A Uncharacterized protein 45.7 77 0.0026 23.7 7.4 32 320-351 30-62 (95)
289 1oyi_A Double-stranded RNA-bin 45.6 14 0.00047 28.3 2.9 32 321-352 31-62 (82)
290 1r1u_A CZRA, repressor protein 45.4 80 0.0027 24.2 7.6 37 319-355 38-74 (106)
291 3e6c_C CPRK, cyclic nucleotide 45.1 33 0.0011 30.4 6.0 63 318-384 175-248 (250)
292 2fmy_A COOA, carbon monoxide o 45.0 17 0.00058 31.6 3.9 51 318-372 165-216 (220)
293 2c2l_A CHIP, carboxy terminus 44.9 54 0.0019 29.6 7.5 64 106-176 38-101 (281)
294 3b02_A Transcriptional regulat 44.8 27 0.00091 29.7 5.1 49 320-372 139-187 (195)
295 1pc2_A Mitochondria fission pr 43.8 66 0.0023 27.3 7.2 66 106-176 32-100 (152)
296 3la7_A Global nitrogen regulat 43.2 43 0.0015 29.6 6.4 48 319-370 192-239 (243)
297 2p7v_B Sigma-70, RNA polymeras 43.2 35 0.0012 24.1 4.7 30 318-347 23-52 (68)
298 3u2r_A Regulatory protein MARR 43.1 88 0.003 25.8 8.1 42 319-360 61-102 (168)
299 2k9l_A RNA polymerase sigma fa 43.1 24 0.00082 26.2 3.8 40 305-344 32-72 (76)
300 3kp7_A Transcriptional regulat 43.0 53 0.0018 26.6 6.5 43 317-359 48-92 (151)
301 2pi2_A Replication protein A 3 42.8 5.1 0.00018 37.5 0.0 38 319-356 223-261 (270)
302 1z6r_A MLC protein; transcript 42.8 36 0.0012 33.1 6.2 47 306-352 13-62 (406)
303 3fm5_A Transcriptional regulat 41.5 33 0.0011 27.9 4.9 41 319-359 53-93 (150)
304 1z91_A Organic hydroperoxide r 41.3 25 0.00084 28.4 4.1 42 318-359 52-93 (147)
305 3pqk_A Biofilm growth-associat 41.1 77 0.0026 24.0 6.8 39 319-357 35-73 (102)
306 3fx3_A Cyclic nucleotide-bindi 41.0 31 0.0011 30.1 5.0 46 320-370 178-223 (237)
307 2h6f_A Protein farnesyltransfe 41.0 1.4E+02 0.0048 28.6 10.2 102 102-216 93-195 (382)
308 2ond_A Cleavage stimulation fa 40.7 57 0.0019 29.7 7.0 86 119-215 182-269 (308)
309 2qlz_A Transcription factor PF 40.6 1.6E+02 0.0056 26.5 9.9 47 316-365 174-220 (232)
310 1q1h_A TFE, transcription fact 40.3 26 0.00088 27.3 3.9 34 320-353 33-66 (110)
311 4a5n_A Uncharacterized HTH-typ 39.0 1.6E+02 0.0054 24.1 9.7 42 318-359 37-79 (131)
312 1uly_A Hypothetical protein PH 38.7 59 0.002 28.4 6.4 35 319-353 32-66 (192)
313 1z05_A Transcriptional regulat 38.4 43 0.0015 32.9 6.0 47 306-352 36-85 (429)
314 2pzi_A Probable serine/threoni 37.7 33 0.0011 35.9 5.3 95 107-215 434-528 (681)
315 2bgc_A PRFA; bacterial infecti 37.2 42 0.0014 29.5 5.3 50 320-373 169-219 (238)
316 2fxa_A Protease production reg 37.0 41 0.0014 29.6 5.1 42 318-359 60-101 (207)
317 4aik_A Transcriptional regulat 36.8 1.7E+02 0.0059 23.8 9.8 45 315-359 41-85 (151)
318 3dkw_A DNR protein; CRP-FNR, H 36.7 39 0.0013 29.2 4.9 48 318-369 176-223 (227)
319 2oz6_A Virulence factor regula 36.7 33 0.0011 29.1 4.4 32 320-351 164-195 (207)
320 2fsw_A PG_0823 protein; alpha- 36.3 45 0.0015 25.9 4.7 42 318-359 36-78 (107)
321 1ku3_A Sigma factor SIGA; heli 36.1 40 0.0014 24.1 4.1 28 319-346 29-56 (73)
322 2x4h_A Hypothetical protein SS 36.0 60 0.0021 26.0 5.7 36 317-352 28-63 (139)
323 1tc3_C Protein (TC3 transposas 35.3 45 0.0015 20.9 3.9 29 318-346 19-47 (51)
324 1on2_A Transcriptional regulat 35.1 53 0.0018 26.5 5.2 44 318-364 20-63 (142)
325 2jpc_A SSRB; DNA binding prote 34.7 60 0.0021 22.0 4.7 30 317-346 10-39 (61)
326 3boq_A Transcriptional regulat 34.3 26 0.0009 28.8 3.2 44 316-359 58-101 (160)
327 1zyb_A Transcription regulator 34.2 62 0.0021 28.3 5.8 33 319-351 185-217 (232)
328 4esb_A Transcriptional regulat 33.6 57 0.002 26.0 5.0 59 330-388 38-103 (115)
329 3rjv_A Putative SEL1 repeat pr 33.6 2E+02 0.0067 24.4 9.1 98 106-215 85-196 (212)
330 3e97_A Transcriptional regulat 33.5 43 0.0015 29.1 4.7 49 318-370 173-221 (231)
331 2xm6_A Protein corresponding t 33.4 1.3E+02 0.0044 29.3 8.7 59 107-174 40-106 (490)
332 3jw4_A Transcriptional regulat 33.3 22 0.00075 28.9 2.5 42 319-360 56-97 (148)
333 2wte_A CSA3; antiviral protein 33.1 89 0.0031 28.5 6.8 44 319-364 165-208 (244)
334 3ryp_A Catabolite gene activat 33.0 42 0.0014 28.5 4.4 32 320-351 167-198 (210)
335 2ooe_A Cleavage stimulation fa 32.8 1E+02 0.0034 30.4 7.8 99 106-216 321-420 (530)
336 2xm6_A Protein corresponding t 32.8 1.3E+02 0.0046 29.1 8.7 92 107-215 112-215 (490)
337 3iwz_A CAP-like, catabolite ac 32.5 43 0.0015 29.0 4.4 32 320-351 187-218 (230)
338 3lpz_A GET4 (YOR164C homolog); 32.4 3.4E+02 0.012 26.0 13.1 123 3-130 12-160 (336)
339 2o8x_A Probable RNA polymerase 32.2 50 0.0017 22.9 4.0 29 317-345 28-56 (70)
340 4fx0_A Probable transcriptiona 31.6 1E+02 0.0036 25.1 6.5 40 319-359 51-90 (148)
341 1klx_A Cysteine rich protein B 31.3 1.1E+02 0.0038 24.3 6.6 88 112-216 31-126 (138)
342 2yin_A DOCK2, dedicator of cyt 31.3 99 0.0034 30.8 7.3 105 102-210 31-136 (436)
343 2x49_A INVA, invasion protein 30.9 2.1E+02 0.0071 27.4 9.3 72 27-118 161-232 (333)
344 2fu4_A Ferric uptake regulatio 30.8 75 0.0026 23.1 5.0 44 319-363 32-80 (83)
345 1tty_A Sigma-A, RNA polymerase 30.8 52 0.0018 24.5 4.1 28 319-346 37-64 (87)
346 1sfu_A 34L protein; protein/Z- 30.6 68 0.0023 24.0 4.5 33 321-353 30-62 (75)
347 2h6f_A Protein farnesyltransfe 30.6 1E+02 0.0034 29.7 7.1 98 106-216 131-229 (382)
348 1ft9_A Carbon monoxide oxidati 30.3 46 0.0016 28.8 4.2 33 319-351 162-194 (222)
349 2v9v_A Selenocysteine-specific 30.1 2.1E+02 0.007 22.7 8.9 32 321-352 18-49 (135)
350 1xi4_A Clathrin heavy chain; a 29.9 1.8E+02 0.0062 33.9 9.7 56 107-174 1106-1161(1630)
351 3l7w_A Putative uncharacterize 29.6 1.5E+02 0.0053 22.9 6.9 60 328-387 34-99 (108)
352 1xi4_A Clathrin heavy chain; a 29.6 1.6E+02 0.0056 34.3 9.3 50 111-175 1200-1249(1630)
353 3hug_A RNA polymerase sigma fa 28.8 94 0.0032 23.2 5.3 29 317-345 50-78 (92)
354 2hoe_A N-acetylglucosamine kin 28.7 46 0.0016 32.1 4.3 40 312-352 26-65 (380)
355 2ff4_A Probable regulatory pro 28.7 93 0.0032 30.1 6.5 77 93-176 158-234 (388)
356 3mkq_A Coatomer beta'-subunit; 28.3 2E+02 0.0067 29.6 9.4 83 116-214 662-750 (814)
357 3cuq_B Vacuolar protein-sortin 27.8 1.8E+02 0.0061 26.0 7.8 44 319-363 167-210 (218)
358 2p5k_A Arginine repressor; DNA 27.7 1.4E+02 0.0049 20.1 6.7 42 318-364 17-63 (64)
359 1xmk_A Double-stranded RNA-spe 27.0 87 0.003 23.5 4.6 35 318-352 23-58 (79)
360 3tqn_A Transcriptional regulat 26.9 1.2E+02 0.0042 23.7 5.9 45 317-363 29-74 (113)
361 2vn2_A DNAD, chromosome replic 26.8 52 0.0018 26.7 3.7 37 321-357 52-88 (128)
362 1je8_A Nitrate/nitrite respons 26.6 1.1E+02 0.0038 22.4 5.3 30 317-346 33-62 (82)
363 3mix_A Flagellar biosynthesis 26.6 2.1E+02 0.0071 28.0 8.5 75 26-119 205-279 (382)
364 4b4t_R RPN7, 26S proteasome re 26.1 4.2E+02 0.014 25.7 11.0 68 106-174 168-235 (429)
365 3kcc_A Catabolite gene activat 25.9 63 0.0021 28.9 4.4 32 320-351 217-248 (260)
366 2b0l_A GTP-sensing transcripti 25.6 96 0.0033 24.1 4.9 46 317-362 39-85 (102)
367 3t5v_A Nuclear mRNA export pro 25.5 1E+02 0.0034 29.4 5.9 64 278-341 177-246 (316)
368 1ldd_A APC2WHB, anaphase promo 25.4 1.1E+02 0.0036 22.9 4.7 20 333-352 46-65 (74)
369 1eij_A Hypothetical protein MT 25.1 27 0.00093 26.6 1.4 22 334-355 36-57 (80)
370 2k9m_A RNA polymerase sigma fa 25.1 64 0.0022 26.6 3.9 27 318-344 37-63 (130)
371 3mzy_A RNA polymerase sigma-H 25.1 81 0.0028 25.4 4.7 30 316-345 120-149 (164)
372 1x3u_A Transcriptional regulat 24.9 1.3E+02 0.0044 21.3 5.3 30 317-346 28-57 (79)
373 2lkp_A Transcriptional regulat 24.9 2.4E+02 0.0081 21.7 8.6 35 319-353 44-78 (119)
374 2jsc_A Transcriptional regulat 24.5 1.1E+02 0.0039 24.0 5.3 36 320-355 34-69 (118)
375 3a5i_A Flagellar biosynthesis 24.5 1.8E+02 0.0062 28.5 7.7 73 27-118 217-289 (389)
376 3k2z_A LEXA repressor; winged 24.5 1.8E+02 0.006 25.0 7.0 34 320-353 24-57 (196)
377 3t72_q RNA polymerase sigma fa 24.4 82 0.0028 24.5 4.2 28 319-346 38-65 (99)
378 1j5y_A Transcriptional regulat 23.8 1.3E+02 0.0046 25.7 6.0 33 320-352 36-69 (187)
379 2z99_A Putative uncharacterize 23.7 82 0.0028 28.5 4.6 68 304-375 17-88 (219)
380 3iuo_A ATP-dependent DNA helic 23.7 97 0.0033 25.0 4.7 34 316-349 28-61 (122)
381 1t6s_A Conserved hypothetical 23.5 91 0.0031 26.8 4.7 68 304-375 9-82 (162)
382 1fse_A GERE; helix-turn-helix 23.5 1.5E+02 0.005 20.6 5.3 28 318-345 24-51 (74)
383 2lfc_A Fumarate reductase, fla 23.4 58 0.002 27.5 3.4 31 318-348 93-126 (160)
384 1klx_A Cysteine rich protein B 23.1 1.7E+02 0.006 23.0 6.3 61 106-175 57-125 (138)
385 3b73_A PHIH1 repressor-like pr 22.8 1.3E+02 0.0045 23.9 5.3 43 318-363 25-69 (111)
386 3neu_A LIN1836 protein; struct 22.8 1.7E+02 0.0057 23.3 6.1 46 317-364 33-79 (125)
387 3by6_A Predicted transcription 22.8 1E+02 0.0035 24.8 4.7 46 317-364 31-77 (126)
388 2rnj_A Response regulator prot 22.6 1.1E+02 0.0038 22.7 4.6 29 318-346 42-70 (91)
389 3c57_A Two component transcrip 22.5 1.4E+02 0.0048 22.5 5.3 29 318-346 40-68 (95)
390 3nft_A Translocator protein BI 22.4 2E+02 0.0067 27.1 6.9 114 261-395 138-273 (303)
391 2fh0_A Hypothetical 16.0 kDa p 22.1 30 0.001 26.4 1.1 22 334-355 34-55 (81)
392 4fhn_B Nucleoporin NUP120; pro 22.1 2.7E+02 0.0093 31.0 9.5 118 109-232 845-978 (1139)
393 2zsh_B Della protein GAI; plan 21.4 94 0.0032 24.8 3.9 51 2-59 39-89 (110)
394 1o5l_A Transcriptional regulat 21.2 20 0.00069 31.1 0.0 48 318-369 162-209 (213)
395 1u2w_A CADC repressor, cadmium 21.1 3E+02 0.01 21.5 10.1 35 319-353 55-89 (122)
396 3f6v_A Possible transcriptiona 20.3 1.7E+02 0.0058 24.3 5.8 37 319-355 70-106 (151)
397 2ek5_A Predicted transcription 20.2 1.4E+02 0.0048 24.1 5.1 45 317-363 24-69 (129)
398 2w48_A Sorbitol operon regulat 20.1 1.4E+02 0.0046 28.0 5.6 42 317-358 18-59 (315)
399 3hrs_A Metalloregulator SCAR; 20.0 1.3E+02 0.0043 26.6 5.1 44 318-364 18-61 (214)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-66 Score=534.11 Aligned_cols=351 Identities=22% Similarity=0.305 Sum_probs=289.2
Q ss_pred hHHHHHHHH--------HHhhccchhhchHH---------HHHHHHHHhcCCCCc--chhchHHHHHhhhcCccchHHHH
Q psy7321 44 TECLNLFVE--------AIVNENVSLVISRQ---------ILTDVSTHLVSQPDE--VAKPVSHFTLDKVQPRVISFEEQ 104 (408)
Q Consensus 44 ~~~l~~~~~--------~~~~e~v~~~~~r~---------iv~~~~~~l~~l~~~--~~~~~~~~~L~~i~~~~i~~E~e 104 (408)
..-++++++ ..+++++.++++|+ ||+.+++++++.|+. ..+..++++|+++++|+||||+|
T Consensus 56 ~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~e 135 (445)
T 4b4t_P 56 KEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVE 135 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHH
Confidence 444666665 45678888888865 999999999988853 56889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc-cCCcH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA-ETKDE 183 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~-~~~~~ 183 (408)
|+|++..||++|++.|+|.+|+++|+++++|| ++.++..+|++++++|+|+|++.+||++|+++++|++.... ..+++
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et-~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVET-YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 99999999999999999999999999999999 88999999999999999999999999999999999986443 55789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCCh
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIID--EAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLP 261 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~--~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp 261 (408)
+++++|+.|+|++++++++|++||++|+++|.++.+. +..+..+|+++++|.||+|++|+|+++++++++|++++++|
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~ 294 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLE 294 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccH
Confidence 9999999999999999999999999999999886543 34588999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-hhcCcchH-HHHHHHhchhhhhhhcch----hhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHH
Q psy7321 262 AYSILEKMYLD-RIIRKSEL-QDFAALLKPHQKAITVDG----SSILERAVTEHNLLSASKLYNNISFPELGALLQISAA 335 (408)
Q Consensus 262 ~~~~L~k~f~~-~ii~~~~l-~~F~~~L~~h~~~~~~d~----~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e 335 (408)
.|+.|+++|.+ ++++|+.+ ..|...|.+|+..+..++ ++.|+++|+||||+++++||++|+|++||++||+|++
T Consensus 295 ~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~ 374 (445)
T 4b4t_P 295 SQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTES 374 (445)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHH
Confidence 99999999987 57788765 567788888887655443 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCceEEEeccCCcEEEecCC----CchhhHHHHHHHHHHHHHHHHHHHHhhCh
Q psy7321 336 KAEKIASHMICEGRMNGYVDQIDSIVHFETR----EILPSWDKQIESLCYRIDHIMEQIETVQP 395 (408)
Q Consensus 336 ~~E~~ls~mI~~grl~akIDqv~giV~F~~~----~~l~~W~~~I~~l~~~v~~v~~~i~~~~p 395 (408)
++|..+++||.+|+|+|+||||+|+|+|+++ +.++.|+++|.++|+.||+++|+|++|.+
T Consensus 375 evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l~~~v~k~~~lI~kE~m 438 (445)
T 4b4t_P 375 QTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEI 438 (445)
T ss_dssp HHHHHHHHHHHHTSSCCEEETTTTEEEC------------------------------------
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865 68999999999999999999999999874
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=1.6e-37 Score=313.58 Aligned_cols=345 Identities=14% Similarity=0.174 Sum_probs=266.0
Q ss_pred HHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHH---HHHHHHHHhcCCCCc--chhchHHHHHhhhc-Cccch
Q psy7321 27 YRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQ---ILTDVSTHLVSQPDE--VAKPVSHFTLDKVQ-PRVIS 100 (408)
Q Consensus 27 y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~---iv~~~~~~l~~l~~~--~~~~~~~~~L~~i~-~~~i~ 100 (408)
.-.|..-....+. .+.|..++.++. .-.+.+.+-. +|+.+++.+..+|+. .+..+|.+++.|.. +++.|
T Consensus 22 ~~~l~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 22 ILQQGELYKQEGK----AKELADLIKVTR-PFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHTC----HHHHHHHHHHTT-TGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcCC----HHHHHHHHHHHH-HHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443 456777776554 4445555532 999999999999975 45788999999994 78999
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCc-hhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc
Q psy7321 101 FEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSV-DYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE 179 (408)
Q Consensus 101 ~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~-~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~ 179 (408)
+ +.++..+||++|...|+|.+|.+++.+++-|+ ++.++ ...+|+++.++++|.+.+|+.+++.++.++......
T Consensus 97 l---r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~--~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 97 L---RQSLEARLIALYFDTALYTEALALGAQLLREL--KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp H---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 9 99999999999999999999999999999988 34454 579999999999999999999999999988755443
Q ss_pred C-CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHhCCCCcchhHHHH----hhh
Q psy7321 180 T-KDETLQVHYKVCYARVLD-YRRKFIEAAQRYSELSYK-PIIDEAERITALKSALICTILASAGQQRSRMLA----TLF 252 (408)
Q Consensus 180 ~-~~~~lk~~y~~~~a~i~~-~~r~f~eAa~~y~e~~~t-~~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~----~l~ 252 (408)
. .+|.++..++.|.|.+++ .+|+|.+|+.+|++++.+ ...+...+.++++|+++|++++..-++...++. ..|
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~ 251 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY 251 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc
Confidence 3 789999999999999999 899999999999999865 344556788999999999999765444433321 112
Q ss_pred cCcccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcch-----hhhHHHHHHHHHHHHHHhccccCChHHHH
Q psy7321 253 KDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDG-----SSILERAVTEHNLLSASKLYNNISFPELG 327 (408)
Q Consensus 253 ~d~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~-----~~~L~~~ViEhNi~~isk~Ys~Itl~~La 327 (408)
.+|. ++.+..|.++|.+ +++..|...|..|...+..|+ +..|.+.|++||++.+++||++|+|++||
T Consensus 252 ~~pe---i~~l~~L~~a~~~-----~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA 323 (394)
T 3txn_A 252 SGRD---IDAMKSVAEASHK-----RSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVA 323 (394)
T ss_dssp CSHH---HHHHHHHHHHHHT-----TCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHH
T ss_pred CCcc---HHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHH
Confidence 3333 4567778888855 789999999999988787787 36899999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhHHHHHHHHHHHHHHHHHH
Q psy7321 328 ALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQ 389 (408)
Q Consensus 328 ~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W~~~I~~l~~~v~~v~~~ 389 (408)
+.||+|++++|..+++||.+|+|+|+|||++|+|+|.+++.-+.+-.+.-++++.++++++.
T Consensus 324 ~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~ 385 (394)
T 3txn_A 324 ESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDT 385 (394)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-----------------------
T ss_pred HHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987643332222222444444444443
No 3
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-39 Score=329.03 Aligned_cols=285 Identities=15% Similarity=0.114 Sum_probs=217.1
Q ss_pred hcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHh
Q psy7321 94 VQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRA 173 (408)
Q Consensus 94 i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka 173 (408)
..+++...|.|+++....||++|++.||+++|++++..++..| .+.++|+++++.++|++++.+||.++..+++|+
T Consensus 119 ~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~----~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 119 KLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA----ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH----TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456777888999999999999999999999999999999888 566899999999999999999999999999999
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHHHHHhCCCCcchhHHHHhhh
Q psy7321 174 SLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEA-ERITALKSALICTILASAGQQRSRMLATLF 252 (408)
Q Consensus 174 ~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~-e~~~~L~~av~~~ILa~~~~~rs~ll~~l~ 252 (408)
+..+..+++|+++++|+.|.|.++++.|+|.+||++|++++.++...+. .+..++ ++|++++..++.|+++..+++
T Consensus 195 ~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~---~y~~l~al~~~~r~~l~~~v~ 271 (429)
T 4b4t_R 195 NSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIA---TYASVTGLFTLERTDLKSKVI 271 (429)
T ss_dssp HHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHH---HHHHHHHHHTTCHHHHHHSSS
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHH---HHHHHHHHhcCCHHHHHHHHh
Confidence 9888888999999999999999999999999999999999987543332 344444 444445555789999999999
Q ss_pred cCccc----CCChhH---HHHHHHHHHhhcCcchHHHHHH-Hhchhhhhh-----hcchhhhHHHHHHHHHHHHHHhccc
Q psy7321 253 KDERC----QHLPAY---SILEKMYLDRIIRKSELQDFAA-LLKPHQKAI-----TVDGSSILERAVTEHNLLSASKLYN 319 (408)
Q Consensus 253 ~d~~~----~~lp~~---~~L~k~f~~~ii~~~~l~~F~~-~L~~h~~~~-----~~d~~~~L~~~ViEhNi~~isk~Ys 319 (408)
+++++ ...|.+ ..+..+|.. +.+..|.. .+..+...+ ..++++.|.++|++||+..+.+||+
T Consensus 272 ~~~~~~~~l~~~p~~~~~~~l~~~~~~-----~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys 346 (429)
T 4b4t_R 272 DSPELLSLISTTAALQSISSLTISLYA-----SDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYK 346 (429)
T ss_dssp SSHHHHHGGGSHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCS
T ss_pred cCHHHHhhccCChhHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 98764 234544 445666654 34444433 343333333 3335679999999999999999999
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCC----chhhHHHHHHHHHHHHHHHHHHH
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETRE----ILPSWDKQIESLCYRIDHIMEQI 390 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~----~l~~W~~~I~~l~~~v~~v~~~i 390 (408)
+|+|++||++||+|++++|+.+++||.+|+|+|||||++|+|++.+|+ ..+.|-++...+++.+.+..+.|
T Consensus 347 ~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i 421 (429)
T 4b4t_R 347 TLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAV 421 (429)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-----------------------------
T ss_pred eeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998763 46667777777777777665554
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=252.30 Aligned_cols=314 Identities=14% Similarity=0.165 Sum_probs=235.5
Q ss_pred HHHHHHHHhcCCCCc--chhchHHHHHhhhc-CccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCc
Q psy7321 67 ILTDVSTHLVSQPDE--VAKPVSHFTLDKVQ-PRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSV 143 (408)
Q Consensus 67 iv~~~~~~l~~l~~~--~~~~~~~~~L~~i~-~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~ 143 (408)
++...++.+...++. .....+..++.+.. .+..+. ++++...||.+|...|++.+|.+.++.+..++ .+..+.
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~ 171 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL---KHSLSIKLATLHYQKKQYKDSLALINDLLREF-KKLDDK 171 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSSCS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH---HHHHHHHHHHHHHHccChHHHHHHHHHHHHHH-Hhcccc
Confidence 777788888877764 23445555666553 455554 89999999999999999999999999999888 777788
Q ss_pred hhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Q psy7321 144 DYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA-ETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKP----- 217 (408)
Q Consensus 144 ~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~-~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~----- 217 (408)
..++++++.++|+|+..+||.+|..++.++..... ...++.++..++.+++.++.+.++|.+|+++|.+++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~ 251 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTT 251 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Confidence 89999999999999999999999999999875443 234678899999999999999999999999999998752
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhc--CcccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhh
Q psy7321 218 IIDEAERITALKSALICTILASAGQQRSRMLATLFK--DERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAIT 295 (408)
Q Consensus 218 ~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~--d~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~ 295 (408)
......+..++.+.++|.++.+........+..... ....+.+|.+..+...|.+ .++..|...+..|...+.
T Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~l~~~~~~~~~~~~~~~ 326 (434)
T 4b4t_Q 252 HNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNN-----RSLLDFNTALKQYEKELM 326 (434)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHH-----TCHHHHHHHHHHTHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHc
Confidence 112234677888899999998776555544433221 1223346788889998876 567788888877776665
Q ss_pred cch-----hhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC-Cch
Q psy7321 296 VDG-----SSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR-EIL 369 (408)
Q Consensus 296 ~d~-----~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~-~~l 369 (408)
.|+ +..+.+++++||++.++++|++|++++||++||+|++++|..+++||.+|+|+|+|||++|+|+|..+ +..
T Consensus 327 ~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~ 406 (434)
T 4b4t_Q 327 GDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQD 406 (434)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchh
Confidence 554 46888999999999999999999999999999999999999999999999999999999999998754 233
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy7321 370 PSWDKQIESLCYRIDHIMEQI 390 (408)
Q Consensus 370 ~~W~~~I~~l~~~v~~v~~~i 390 (408)
..|...+ ..++.++++++.+
T Consensus 407 ~~~~~~l-~~~~~l~~~vd~L 426 (434)
T 4b4t_Q 407 ATYDSAL-ELVGQLNKVVDQL 426 (434)
T ss_dssp ---------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHH
Confidence 3333333 4555556666543
No 5
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-26 Score=235.11 Aligned_cols=267 Identities=14% Similarity=0.157 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHH-----------HHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHh
Q psy7321 105 VASIRQHLALIYEREENWRDAA-----------NVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRA 173 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa-----------~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka 173 (408)
-+++-...+..||..|+..+.. ..|...+-.| -.-+..-+.-++..++|+||..++|.+|..+++|+
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~--lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS--LKHDNETKAMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCC--SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh--cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 4444445666677766655421 2233333333 23355667889999999999999999999999999
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC--CChHHHHHHHHHHHHHHHhCCCCcchhHHHHh
Q psy7321 174 SLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK-PI--IDEAERITALKSALICTILASAGQQRSRMLAT 250 (408)
Q Consensus 174 ~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t-~~--i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~ 250 (408)
.+......+.+ ..+|+.|.||++..+++|.+|..++..++.. |. .....+..+++++|+|.+|++..|+|+.+...
T Consensus 258 ~fP~~~~sn~q-~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~ 336 (523)
T 4b4t_S 258 EYPHTDVSSSL-EARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQS 336 (523)
T ss_dssp CSCTTTSCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTT
T ss_pred cCCcccCCHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhch
Confidence 97654444544 5899999999999999999999999998864 32 22345889999999999999999999855432
Q ss_pred hhcCcccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchhh----hHHHHHHHHHHHHHHhccccCChHHH
Q psy7321 251 LFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSS----ILERAVTEHNLLSASKLYNNISFPEL 326 (408)
Q Consensus 251 l~~d~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~----~L~~~ViEhNi~~isk~Ys~Itl~~L 326 (408)
.++ +.+..|..|.++|- .+++..|...+.+|+..+..||.. .|+..|+.++|+.+++.|++|++.++
T Consensus 337 ~l~----~~L~pY~~Lv~Avr-----~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dI 407 (523)
T 4b4t_S 337 NMQ----KSLLPYYHLTKAVK-----LGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDI 407 (523)
T ss_dssp SCH----HHHHHHHHHHHHHH-----HTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHH
T ss_pred hHH----HHHHHHHHHHHHHH-----cCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 222 12566778888873 389999999999999999999953 56789999999999999999999999
Q ss_pred HHHhCCC-HHHHHHHHHHHHhcCceEEEeccCCcEEEecCC-------CchhhHHHHHHHHHHHHH
Q psy7321 327 GALLQIS-AAKAEKIASHMICEGRMNGYVDQIDSIVHFETR-------EILPSWDKQIESLCYRID 384 (408)
Q Consensus 327 a~lLgls-~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~-------~~l~~W~~~I~~l~~~v~ 384 (408)
|..+|++ ++++|.++++||.+|.|.|+||+.+|+|.|... +++..|+.+| ..|..++
T Consensus 408 a~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI-~~cl~L~ 472 (523)
T 4b4t_S 408 CLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERI-KFANQLH 472 (523)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC----------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccccccccHHHHHHHHHHH-HHHHHHH
Confidence 9999995 788999999999999999999999999999742 6788999999 5776664
No 6
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.5e-23 Score=212.27 Aligned_cols=273 Identities=16% Similarity=0.182 Sum_probs=184.3
Q ss_pred HHHHHHhhccHHHHHHHHhcCccccc----c------ccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCC
Q psy7321 112 LALIYEREENWRDAANVLVGIPLETG----Q------KQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK 181 (408)
Q Consensus 112 LA~~~e~~gd~~eAa~~L~~i~~Et~----~------~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~ 181 (408)
+....+...|..+|.+.|.++..... . ..-..+..+.+.+.++|+|++.+|...|+.+++++...++..+
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 44556677889999998887632220 0 0112345788999999999999999999999999998776554
Q ss_pred cH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCc
Q psy7321 182 DE--TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK----PIIDEAERITALKSALICTILASAGQQRSRMLATLFKDE 255 (408)
Q Consensus 182 ~~--~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t----~~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~ 255 (408)
++ ..+.+||.+.+.++..+++|.+++..+...+.+ ...+..++......+++|++++|.++...+++.....+.
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~ 241 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMET 241 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTS
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHH
Confidence 44 566666666666676677777766665554432 345566777888899999999999999999988765443
Q ss_pred c--cCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhh--cchhhhHHHHHHHHHH--HHHHhccccCChHHHHHH
Q psy7321 256 R--CQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAIT--VDGSSILERAVTEHNL--LSASKLYNNISFPELGAL 329 (408)
Q Consensus 256 ~--~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~--~d~~~~L~~~ViEhNi--~~isk~Ys~Itl~~La~l 329 (408)
. ..+.+.+..|++.|.. +++.+|...+++|..... ......+.+.++...+ ++.+++|++|+|+.||+.
T Consensus 242 L~~~~~~~~l~~Ll~~f~~-----g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~ 316 (393)
T 4b4t_O 242 IVNDSNYDWLFQLLNALTV-----GDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKA 316 (393)
T ss_dssp SCSSSSTTHHHHHHHHHHH-----TCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHH
T ss_pred hhcCCchHHHHHHHHHHhc-----CCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHH
Confidence 2 2345567778888854 889999998888865431 1223344555554444 445678999999999999
Q ss_pred hCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC--------------CchhhHHHHHHHHHHHHHHHHHH
Q psy7321 330 LQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR--------------EILPSWDKQIESLCYRIDHIMEQ 389 (408)
Q Consensus 330 Lgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~--------------~~l~~W~~~I~~l~~~v~~v~~~ 389 (408)
||+|++++|..+++||.+|+|.|+|||++|+|++++. +.|..|..+++++...|++....
T Consensus 317 l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~~~~ 390 (393)
T 4b4t_O 317 THLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEARGQS 390 (393)
T ss_dssp HTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC----------------------------------------
T ss_pred hCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999752 35778888888777777766543
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.84 E-value=1.2e-21 Score=155.77 Aligned_cols=75 Identities=79% Similarity=1.095 Sum_probs=71.7
Q ss_pred hcchhhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCch
Q psy7321 295 TVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREIL 369 (408)
Q Consensus 295 ~~d~~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l 369 (408)
++|+|+.|+++|+||||+.+++||++|++++||++||+|++++|+.+++||.+|+|+|+|||++|+|+|++++++
T Consensus 5 ~~~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 5 SSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999987654
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=136.70 Aligned_cols=174 Identities=14% Similarity=0.160 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChh
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK-PIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPA 262 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t-~~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~ 262 (408)
.-+.+|+-|.|+++..+++|.+|..++.+++.. |.-...-+..+|++.|.+.+|.+.-|.++-+ .+ + . +..
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll-~~-~---~---~~~ 82 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELL-KK-Y---H---LMQ 82 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHH-HH-T---T---CGG
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHh-hh-C---c---hhH
Confidence 445889999999999999999999999999864 4323345788999999999999887776533 21 1 1 124
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchhhhHHHHHHHHHHHHHHh------ccccCChHHHHHHhC-----
Q psy7321 263 YSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASK------LYNNISFPELGALLQ----- 331 (408)
Q Consensus 263 ~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~ViEhNi~~isk------~Ys~Itl~~La~lLg----- 331 (408)
|..|.+++- .+++..|.+.|+.|+..+..||.-.+-.+++...++..-| .|++|+++.++..|+
T Consensus 83 y~~L~~Avr-----~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~ 157 (203)
T 3t5x_A 83 FAEVTRAVS-----EGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVE 157 (203)
T ss_dssp GHHHHHHHH-----HTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCT
T ss_pred HHHHHHHHH-----hCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 777777764 4899999999999998888888544445555554444433 699999999999995
Q ss_pred -CCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchh
Q psy7321 332 -ISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILP 370 (408)
Q Consensus 332 -ls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~ 370 (408)
++.+++|-++++||.+|.|+|+||+.+|++++.+.++.+
T Consensus 158 ~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pFP 197 (203)
T 3t5x_A 158 DVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFP 197 (203)
T ss_dssp TCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCSSC
T ss_pred CCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCCCC
Confidence 489999999999999999999999999999888765544
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.3e-12 Score=133.86 Aligned_cols=247 Identities=12% Similarity=0.154 Sum_probs=175.6
Q ss_pred ccHHHHHHHHhcCcccc-ccccCC------chhH--HHHHHHHHHHhhhcCChHHHHHHHHHhccc----cccCCcHHHH
Q psy7321 120 ENWRDAANVLVGIPLET-GQKQYS------VDYK--LQTYMKIARLYLEDEDPVQAEAFINRASLL----QAETKDETLQ 186 (408)
Q Consensus 120 gd~~eAa~~L~~i~~Et-~~~~~~------~~~K--le~~L~i~RL~L~~~D~~~A~~~i~Ka~~~----~~~~~~~~lk 186 (408)
...++|+.++..+=--| ..++.+ .+.+ +-+.....++|+..+....|+..++-++.. ..+.-...-+
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 45788888887742211 122211 1233 333346789999999999999997665432 1122234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCC-----hHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCC
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSYK--PIID-----EAERITALKSALICTILASAGQQRSRMLATLFKDERCQH 259 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t--~~i~-----~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~ 259 (408)
.+|+-|.|+++..+.+|.+|..++.+++.. |.-. ..-+..+|++.|.+.+|.+.-|.++-+ .+-+ ++ .
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll-~k~~-~~---~ 294 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPL-RPFL-SQ---E 294 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHH-GGGS-CH---H
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHH-cccc-hH---H
Confidence 899999999999999999999999998864 3211 223678999999999999888888732 2221 11 1
Q ss_pred Chh-HHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchh-hhHHHHHHH----HHHHH----HHhcc--ccCChHHHH
Q psy7321 260 LPA-YSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGS-SILERAVTE----HNLLS----ASKLY--NNISFPELG 327 (408)
Q Consensus 260 lp~-~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~-~~L~~~ViE----hNi~~----isk~Y--s~Itl~~La 327 (408)
+.. |..|.+ .++.+++..|...|+.|+..+..+|. -.|..+++. .-++. .+.+| ++|+++.++
T Consensus 295 L~~~y~~L~~-----AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~ 369 (455)
T 3t5v_B 295 TIDNWSVLYK-----HVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIE 369 (455)
T ss_dssp HHHHHHHHHH-----HHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHH
T ss_pred HHHHHHHHHH-----HHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHH
Confidence 222 444444 45669999999999999998888886 434333332 22332 36678 899999999
Q ss_pred HHhC---------------------CCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC----CchhhHHHHH
Q psy7321 328 ALLQ---------------------ISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR----EILPSWDKQI 376 (408)
Q Consensus 328 ~lLg---------------------ls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~----~~l~~W~~~I 376 (408)
..|+ ++.+++|-+++++|.+|.|+|+||+.+|++++.+. ++.+..++.+
T Consensus 370 ~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~~~~~pFP~l~~~~ 443 (455)
T 3t5v_B 370 RVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTTMIQEIVPPVNERI 443 (455)
T ss_dssp HHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCSCGGGTSCCHHHHH
T ss_pred HHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCCCCCCCCCChHHHH
Confidence 9998 58999999999999999999999999999999887 7777665554
No 10
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.45 E-value=3.5e-06 Score=78.64 Aligned_cols=203 Identities=12% Similarity=0.110 Sum_probs=126.4
Q ss_pred HHHHHhhhcCChHHHHHHHHHhcc-------ccccCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCC
Q psy7321 152 KIARLYLEDEDPVQAEAFINRASL-------LQAETKDETLQV--HYKVCYARVLDYRRKFIEAAQRYSE----LSYKPI 218 (408)
Q Consensus 152 ~i~RL~L~~~D~~~A~~~i~Ka~~-------~~~~~~~~~lk~--~y~~~~a~i~~~~r~f~eAa~~y~e----~~~t~~ 218 (408)
...+-.++.+|+..|...+.+++. ........++.+ ..|...+++.. +.++.++...|.. .+....
T Consensus 12 ~~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al-~~~D~~~F~~~~~qLk~~Y~~~~ 90 (229)
T 4b0z_A 12 NHLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSI-QTCDIESFARYASQVIPFYHDSL 90 (229)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHccC
Confidence 345666789999999999988752 111223334332 33333444433 4444555554443 222222
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcch
Q psy7321 219 IDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDG 298 (408)
Q Consensus 219 i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~ 298 (408)
.+.+....++.+-+++.++....++.+..+..+.....+++-|..+.-.+. .+.+..+++..|.+.++.+.......-
T Consensus 91 ~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l--~~al~~GnY~kff~l~~~~p~~~~~~~ 168 (229)
T 4b0z_A 91 VPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISL--EQNVMEGAFDKVASMIRSCNFPEFSYF 168 (229)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHH--HHHHHTTCHHHHHHHHHTCCCGGGHHH
T ss_pred CCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHH--HHHHHcCCHHHHHHHHhcCccchHHHH
Confidence 222335667888888888888778888887776654333334544422221 233334788888887764422111222
Q ss_pred hhhHHHHHHHHHHHHHHhccccCChHHHHHHhCC-CHHHHHHHHHHHHhcCceEEEeccCCcEEEecC
Q psy7321 299 SSILERAVTEHNLLSASKLYNNISFPELGALLQI-SAAKAEKIASHMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 299 ~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgl-s~e~~E~~ls~mI~~grl~akIDqv~giV~F~~ 365 (408)
...|..+++..-+..+++.|++|+++.+++.||+ |+++++..+.+- | =.|+ +|.|+|.+
T Consensus 169 ~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~---g---w~i~--dg~i~F~~ 228 (229)
T 4b0z_A 169 MKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER---G---WDIR--DGVIYFPK 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH---T---CEEE--TTEEECC-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc---C---CEEe--CCEEecCC
Confidence 3578888999999999999999999999999999 588888888763 2 1343 77888864
No 11
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.04 E-value=6.3e-05 Score=66.91 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHhh-hcCcccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchhhhHHHH
Q psy7321 227 ALKSALICTILASAGQQRSRMLATL-FKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERA 305 (408)
Q Consensus 227 ~L~~av~~~ILa~~~~~rs~ll~~l-~~d~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~ 305 (408)
....++..++.+|....=.+++..- .+.=+..+-+.+..|++.|.. +++..|...-..+ ..+. ..+.+-
T Consensus 25 ~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~-----G~~~~y~~~~~~~-p~L~----~~~~~K 94 (169)
T 3chm_A 25 ALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAH-----GTWGDYKCNATRL-PHLS----PDQILK 94 (169)
T ss_dssp GHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHH-----CCHHHHHHHGGGS-CCCC----HHHHHH
T ss_pred HHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhc-----CCHHHHHHhHHhC-cchH----HHHHHH
Confidence 3345678888888644434444211 000000123456678888854 6677666532211 1111 234444
Q ss_pred HHHHHHHHHHhccccCChHHHHHHhCCC-HHHHHHHHH-HHHhcCceEEEeccCCcEEEecC
Q psy7321 306 VTEHNLLSASKLYNNISFPELGALLQIS-AAKAEKIAS-HMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 306 ViEhNi~~isk~Ys~Itl~~La~lLgls-~e~~E~~ls-~mI~~grl~akIDqv~giV~F~~ 365 (408)
++.--+...+.--+.|+++.|++.++++ ++++|..+. ++|..|-|.|||||+++.|+..+
T Consensus 95 lrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~ 156 (169)
T 3chm_A 95 LKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPF 156 (169)
T ss_dssp HHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEe
Confidence 4444444444448999999999999999 999999999 99999999999999999987765
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.03 E-value=0.0039 Score=50.79 Aligned_cols=111 Identities=13% Similarity=0.041 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
..+.+...+|.+|...|++++|.+.+....--. ...-+.......+.....++...+++..|..+..++-......+++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 467788899999999999999999987753222 2223445567888999999999999999999999987655444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
......+...|.++...++|.+|-.+|.++..
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66677777888888889999999998887763
No 13
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.99 E-value=0.0067 Score=49.37 Aligned_cols=110 Identities=11% Similarity=-0.039 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.+.....+|.+|...|++++|.+.+....--. ...-+.......+.....++...+++..|..+..++-......+++.
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 126 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 126 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH
Confidence 45677889999999999999999988753222 22223445688889999999999999999999999876544445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.....+...+.++...++|.+|..+|.+...
T Consensus 127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777888999899999999999887653
No 14
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.40 E-value=0.14 Score=46.60 Aligned_cols=110 Identities=10% Similarity=0.000 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhhcc--------------------HHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChH
Q psy7321 105 VASIRQHLALIYEREEN--------------------WRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPV 164 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd--------------------~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~ 164 (408)
.+.....+|.+|...|+ +++|.+.+.....-. ....+.......+....++++..+++.
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV-TALGDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 45566778888888888 888877776532211 223455667777888888888888888
Q ss_pred HHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 165 QAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 165 ~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.|..+..++-......+++......+...+.++...++|.+|-..|.++..
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888887777654443445555666677778888888888888888876654
No 15
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.26 E-value=0.13 Score=48.82 Aligned_cols=110 Identities=10% Similarity=-0.041 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.+.....+|.+|...|++++|...+....--. ...-+.......+....++|+..+++..|..++.++.......++..
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 46677889999999999999999988753222 12223445688889999999999999999999999876544444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.....+...|.++...++|.+|..+|.++..
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566677889999999999999999988764
No 16
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.18 E-value=0.17 Score=47.90 Aligned_cols=111 Identities=13% Similarity=0.051 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
..+.....+|.+|...|++++|...+.....-. ...-+.......+.....+|...+++..|..++.++-......++.
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 356778899999999999999999988753222 2222344567788999999999999999999999987654444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
......+...|.++...++|-+|...|.++..
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 66667777889999999999999999988764
No 17
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.11 E-value=0.043 Score=47.00 Aligned_cols=110 Identities=14% Similarity=0.038 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCC-cH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK-DE 183 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~-~~ 183 (408)
.+.+...+|.+|...|++++|...+....--. ...-........+.....+|...+++..|..+..++-......+ ++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQA-QKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 46677889999999999999999988753222 22223456788889999999999999999999999876544333 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
......+...+.++...++|-+|-.+|.+...
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566677788888889999999999988764
No 18
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.10 E-value=0.028 Score=51.40 Aligned_cols=111 Identities=13% Similarity=0.051 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
..+.+...+|.+|...|++++|...+....--. ...-+.......+....+++...+++..|..++.++.......+++
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 355666677777777777777776666543333 2223455566677777777777777777777776665444434455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
......+...+.++...++|.+|...|.++..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55566666677777777777777777765543
No 19
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.09 E-value=0.19 Score=48.11 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 145 YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 145 ~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.....+....++|+..+++..|..++.++-......++.......+...+.++...++|.+|-..|.++.
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455555556666666666666555555543333223333444444555555555555555555555443
No 20
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.94 E-value=0.042 Score=47.06 Aligned_cols=109 Identities=10% Similarity=0.062 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCC--chhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYS--VDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~--~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
.+.....+|.+|...|++++|...+....--. +..+ .......+.....++...+++..|..++.++-......++
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 142 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELL--ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 56677889999999999999999988743221 2233 2256788889999999999999999999888755444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+......+...+.++...++|-+|..+|.+...
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 555566667788888889999999999988764
No 21
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.88 E-value=0.081 Score=41.29 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc-cCCcH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA-ETKDE 183 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~-~~~~~ 183 (408)
.+..-..+|..+...|++++|...+....- . .+ .-...+.....++...+++..|..+..++..... ...++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-----~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKE-L-----DP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c-----CC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 455667899999999999999999987532 1 11 1256788899999999999999999988865432 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
......+...|.++...++|.+|-..|..+...
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 444555667788888899999999999887764
No 22
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.86 E-value=0.24 Score=46.15 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccC-CchhHHHHHHHHHHHhhhc-CChHHHHHHHHHhccccccCCc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQY-SVDYKLQTYMKIARLYLED-EDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~-~~~~Kle~~L~i~RL~L~~-~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
.+.....++.+|...|++++|...+.... +. .... +...-...+.....+|... +++..|..+..++-......++
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l-~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAI-QI-FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HH-HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 46667889999999999999998887642 22 1222 2233467888899999996 9999999999999765443334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.......+.-.|.++...++|-+|..+|..+...
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3333444556788888899999999999988764
No 23
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.78 E-value=0.07 Score=43.47 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc-cCCc
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA-ETKD 182 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~-~~~~ 182 (408)
+.+.....|+..+.+.|+|++|...+...- +. ++. -...+.....+|+..+++..|.....++-.... ...+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al-~~-----~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-EL-----DPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 356667789999999999999999998742 22 121 257788899999999999999999988864332 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+....+-+..+|..+...++|.+|-.+|.....
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555556678888888999999999988764
No 24
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.75 E-value=0.035 Score=53.45 Aligned_cols=111 Identities=8% Similarity=-0.053 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
..+.....+|.+|...|++++|.+.+....--. ....+.......+....++|+..+++..|..++.++-......++.
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA-REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 345566667777777777777766665543322 1223445556666667777777777777777766665444433444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
......+...|.++...++|-+|..+|.++..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555556667777776677666666665543
No 25
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.42 E-value=0.25 Score=46.30 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccC-CchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQY-SVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~-~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
..+.....++.+|...|++++|...+.... +. +... +.......+..+..+|.. +|+.+|..+..++-......++
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l-~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~ 150 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKAS-VM-YVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER 150 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHH-HH-HHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HH-HHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC
Confidence 356677888999999999999998887642 22 2222 233456788889999988 9999999999999765544445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+......+.-.|.++...++|-+|..+|..+..
T Consensus 151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555556666778888889999999999988765
No 26
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.28 E-value=0.77 Score=42.40 Aligned_cols=109 Identities=13% Similarity=0.097 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCcccccccc-CCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQ-YSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~-~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
.+.+...+|.+|...|++++|...+....--. ... ........++..+..+|...+++..|..+.+++-......++.
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQL-EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 45567889999999999999999988754211 111 2445677899999999999999999999999987544333343
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q psy7321 184 TLQVHYKVCYARVLDYRR-KFIEAAQRYSELS 214 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r-~f~eAa~~y~e~~ 214 (408)
......+...|.++...+ +|-+|-.+|..+.
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 444566667788887777 4677877777665
No 27
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.20 E-value=0.18 Score=47.34 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.+.....+|.+|+. |++++|...+...- +.....-+.......+.....+|...+++..|..+..++-......++..
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence 46677889999999 99999999987642 22111112234578889999999999999999999999875543333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPII 219 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i 219 (408)
....++...+..+...++|.+|-.+|......|.+
T Consensus 193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~ 227 (307)
T 2ifu_A 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Confidence 33445555666677778999999999887733443
No 28
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.15 E-value=0.21 Score=40.05 Aligned_cols=101 Identities=11% Similarity=-0.104 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
+.....+|..+...|++.+|.+.+....-.. -+.......+......|...+++..|..+..++..... .+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~- 100 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVK- 100 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHH-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHH-
Confidence 4455778999999999999999998853211 12234578899999999999999999999988865321 2322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...+.++...++|-+|...|..+...
T Consensus 101 ---~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ---ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ---HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3345788888899999999999888753
No 29
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.12 E-value=0.45 Score=45.65 Aligned_cols=111 Identities=14% Similarity=-0.002 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
...+.+...||.+|...|++++|.+.+....--. ...-+.......+.....+|...+++..|..+..++-......++
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 3568888899999999999999999887743211 222233456788889999999999999999999998754433234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+.. ..-+...|.++...++|-+|-.+|..+..
T Consensus 258 ~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 258 DLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp GGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444 55566788999999999999999988775
No 30
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.07 E-value=0.2 Score=41.84 Aligned_cols=93 Identities=15% Similarity=0.087 Sum_probs=69.2
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHH
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYK 190 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~ 190 (408)
.|+.++.+.|++++|...++... -.+.+.-..++...++|...++|..|..+++++-... ..+++ .+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~-------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~----a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGST-------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPK----AH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHS-------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH----HH
T ss_pred HhHHHHHHcChHHHHHHHHHHhc-------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----HH
Confidence 47889999999999999888732 1234556677889999999999999999999986532 23433 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 191 VCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 191 ~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
...|.++...++|-+|-.+|..+...
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 45788888899999999999988753
No 31
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.03 E-value=0.15 Score=49.06 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCC-chhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccC
Q psy7321 102 EEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYS-VDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAET 180 (408)
Q Consensus 102 E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~-~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~ 180 (408)
+.+.+.+...+|.+|...|++.+|...+.... +...+..+ .......+..+..+|...+++..|..+..++-......
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL-DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 35678888999999999999999998887642 22111112 23567888899999999999999999999987655444
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 181 KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 181 ~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+++......+...|.++...++|-+|-.+|.++..
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666667777889999999999999999998875
No 32
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.02 E-value=0.21 Score=46.26 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc-cCCc
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA-ETKD 182 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~-~~~~ 182 (408)
+.......++.+|...|++++|...+...--.. ....+.......+..+..+|...+++..|..+..++-.... ...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~ 191 (293)
T 2qfc_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC-CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence 445556678999999999999999887642212 22233444678899999999999999999999999874322 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+.+....+...|.++...++|-+|-.+|..+..
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444445666788888889999999999988763
No 33
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.99 E-value=0.13 Score=49.35 Aligned_cols=112 Identities=12% Similarity=-0.028 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCC--chhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc
Q psy7321 102 EEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYS--VDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE 179 (408)
Q Consensus 102 E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~--~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~ 179 (408)
..+.+.....+|.+|...|++.+|...+.... +. ....+ .......+..+..+|...+++..|..+..++-.....
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al-~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAY-EI-YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH-HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 33567888999999999999999999887743 22 22222 3456788889999999999999999999999765544
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 180 TKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 180 ~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+++......+...|.++...++|-+|-.+|.++..
T Consensus 217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456666667777789999999999999999998875
No 34
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.86 E-value=0.062 Score=48.95 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccC--CchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc--C
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQY--SVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE--T 180 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~--~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~--~ 180 (408)
.+.....+|..|...|++++|...+....--. .+.. +.......+.....+|...+++..|..++.++-..... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDL-EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 56677889999999999999999998754211 1111 34567888999999999999999999999888654321 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 181 KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 181 ~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+.......+...+.++...++|.+|...|.++..
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 22233455666788888888999999999988764
No 35
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.67 E-value=0.15 Score=46.32 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCcccccccc--CCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc--C
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQ--YSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE--T 180 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~--~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~--~ 180 (408)
.......+|.+|...|++++|...+....--. .+. -+.......+....+++...+++..|..++.++-..... +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 46677889999999999999999988753211 111 223456788899999999999999999999888654321 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 181 KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 181 ~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
++.......+...+.++...++|-+|...|.++..
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22233455666789999999999999999988774
No 36
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.57 E-value=0.15 Score=48.92 Aligned_cols=112 Identities=12% Similarity=-0.009 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCC
Q psy7321 102 EEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK 181 (408)
Q Consensus 102 E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~ 181 (408)
....+.+...||.+|...|++++|.+.+....--. ...-+.......+.....+|...+++..|..+..++-......+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 34457788899999999999999999887743211 22223445677888999999999999999999999876543333
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 182 D-ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 182 ~-~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+ +.. ..-+...|.++...++|-+|-.+|..+..
T Consensus 259 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 259 ILPSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp CGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 333 55566788888889999999999988764
No 37
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=94.52 E-value=0.25 Score=45.78 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccC-Cc
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAET-KD 182 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~-~~ 182 (408)
+.......++.+|...|++++|...+...--.. ....+....+.++..+..+|...+++.+|..+..++-...... .+
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC-CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 335555668999999999999999888754322 2222333467788899999999999999999998886433322 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.......+...|.++...++|.+|-.+|.++..
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566666777888888889999999999887764
No 38
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.38 E-value=0.22 Score=39.26 Aligned_cols=100 Identities=12% Similarity=0.017 Sum_probs=72.9
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHY 189 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y 189 (408)
..+|..+...|++++|.+.+..+.-.. -+.....+.+......++..+|+..|..+..++-....+ ++. ....
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~~-~~~~ 78 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT--HDK-AAGG 78 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--STT-HHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--Ccc-cHHH
Confidence 567899999999999999998863211 122334578888999999999999999999888653321 211 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+...|.++...++|-+|-..|..+...
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 335678888889999999999887754
No 39
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=94.27 E-value=0.16 Score=45.16 Aligned_cols=110 Identities=21% Similarity=0.152 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCcccccccc--CCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc--C
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQ--YSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE--T 180 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~--~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~--~ 180 (408)
.+.+...+|.+|...|++++|...+....--. ... -+.......+.....+|...+++..|..+..++-..... +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIR-EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-HHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 56777889999999999999999988753211 111 223457888999999999999999999999888654321 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 181 KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 181 ~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+.......+...|.++...++|-+|-.+|.++..
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22123345566778888888999999999888764
No 40
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.08 E-value=0.62 Score=35.18 Aligned_cols=99 Identities=15% Similarity=-0.028 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.+.....+|..+...|++++|.+.+....-.. + .-...+.....++...+++..|..+..++..... .++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~ 73 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD------P-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGK 73 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------C-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHH
Confidence 34556778999999999999999998753211 1 1256788889999999999999999988865322 2332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...|.++...++|.+|...|..+...
T Consensus 74 ----~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 74 ----GYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 2345677888889999999999988764
No 41
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=93.99 E-value=0.31 Score=43.24 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCcccccccc--CCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc--cC
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQ--YSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA--ET 180 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~--~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~--~~ 180 (408)
.......+|.+|...|++++|.+.+....--. ... -+.......+.....+|...+++..|..++.++-.... .+
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 46677889999999999999999988753221 111 12245688899999999999999999999988865421 11
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 181 KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 181 ~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+.......+...|.++...++|-+|-..|.++..
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22233345566788999999999999999988764
No 42
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=93.99 E-value=0.56 Score=36.13 Aligned_cols=101 Identities=14% Similarity=-0.047 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
.........+|..+...|++++|...+....-.. + .-...+....+++...+++..|..+..++.... ..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~ 79 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN------P-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC------C-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccC
Confidence 3456667889999999999999999988753211 1 125678889999999999999999998886532 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+. .+...|.++...++|.+|...|..+...
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 80 SK----AYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 22 3446788888889999999999887753
No 43
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.98 E-value=0.42 Score=38.72 Aligned_cols=104 Identities=13% Similarity=-0.000 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc
Q psy7321 100 SFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE 179 (408)
Q Consensus 100 ~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~ 179 (408)
++.-+.+.....++..|.+.|+|++|.+.+.... +. ++ .-.+.+......|+..+++..|.....++-...
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al-~~-----~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-- 77 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAV-KR-----DP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-- 77 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--
Confidence 3344567777889999999999999999998742 11 11 235788889999999999999999999986532
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 180 TKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 180 ~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
..+.+ .+...|.++...++|.+|-..|..+...
T Consensus 78 p~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 78 SKFIK----GYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhH----HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22332 2445788888899999999999988764
No 44
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.14 Score=49.60 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
+.+...++.++...|++++|.+.+.....-+ ........+..++...+++|...|+|..|..++.++........+...
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA-KREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH-HHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 4556778888888999999988877643222 222223346788899999999999999999999888654443445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
...++...++++...++|..|-..|..+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 788899999999999999999999887654
No 45
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=93.80 E-value=0.36 Score=40.30 Aligned_cols=99 Identities=8% Similarity=-0.082 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.+.....+|..+...|+|++|...+....- . .+ .-..++.....+|+..+++..|..++.++-.... .+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~- 79 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS-I-----AP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYS- 79 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH-
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----CC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCH-
Confidence 456667899999999999999999987532 1 11 1357888999999999999999999999875422 232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
..+...|.++...++|.+|-.+|..+...
T Consensus 80 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 80 ---KAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 23446788888899999999999988753
No 46
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=93.69 E-value=0.32 Score=45.05 Aligned_cols=104 Identities=9% Similarity=0.014 Sum_probs=75.2
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHY 189 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y 189 (408)
...+..+...|++++|.+.+....-.. .........+..+.....++...+++..|..+..++-.......++......
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 456788899999999998887532111 1111223456677778899999999999999999986543333333334556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
+...|.++...++|-+|-.+|..+.
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6778888999999999999998876
No 47
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.69 E-value=0.28 Score=45.69 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccC-CchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQY-SVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~-~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
..-...+.+|...|+|++|...+... ++. .... +...-...+.....+|...+++..|..+..++-......+++..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~a-l~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKA-ADY-QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHH-HHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHH-HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 34455578899999999999988764 222 1222 23345788899999999999999999999999765544455555
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy7321 186 QVHYKVCYARVLDYR-RKFIEAAQRYSELSY 215 (408)
Q Consensus 186 k~~y~~~~a~i~~~~-r~f~eAa~~y~e~~~ 215 (408)
....+.-.|.++... ++|-+|-.+|.++..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 555666778888886 999999999988765
No 48
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.51 E-value=0.15 Score=42.71 Aligned_cols=98 Identities=15% Similarity=0.076 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCC
Q psy7321 102 EEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK 181 (408)
Q Consensus 102 E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~ 181 (408)
.-+.......||.+|...|++++|.+.+.... +. ++ .-.+.+.....+|...+++..|.....++-... ..
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al-~~-----~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~ 97 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI-NV-----QE-RDPKAHRFLGLLYELEENTDKAVECYRRSVELN--PT 97 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CC
Confidence 33455556789999999999999999988752 11 11 135788889999999999999999999987532 23
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 182 DETLQVHYKVCYARVLDYRRKFIEAAQRYSE 212 (408)
Q Consensus 182 ~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e 212 (408)
+++. +...|.++...++|.+|++.|.+
T Consensus 98 ~~~~----~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 98 QKDL----VLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp CHHH----HHHHHHHHHHHCSSSSHHHHHHH
T ss_pred CHHH----HHHHHHHHHHcCChHHHHHHHHH
Confidence 4443 33467788888889899988854
No 49
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=93.38 E-value=0.34 Score=37.81 Aligned_cols=96 Identities=10% Similarity=-0.040 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.-...+|..+...|++++|...+....- . .+ .-.+.+.....++...+++..|..+..++..... .++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-----~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~-- 85 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK-R-----NP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIK-- 85 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT-T-----CT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-c-----CC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchH--
Confidence 3446689999999999999999987531 1 11 1267888999999999999999999988875322 2332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+...|.++...++|.+|-..|..+..
T Consensus 86 --~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 86 --GYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344568888888999999999988765
No 50
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.71 Score=36.40 Aligned_cols=98 Identities=12% Similarity=-0.014 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.+..-..+|..+...|++.+|...+....- . ++ .-...+......++..+++..|.....++-.... .++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~-----~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~ 73 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK-R-----AP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVR 73 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-----CC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHH
Confidence 345567889999999999999999887421 1 11 1247888999999999999999999999875422 2332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+...|.++...++|-+|-..|..+..
T Consensus 74 ----~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 74 ----AYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 244578888888999999999988764
No 51
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=93.25 E-value=0.72 Score=37.54 Aligned_cols=100 Identities=18% Similarity=-0.026 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
+.+..-..+|..+...|++.+|.+.+....-.. + .-.+.+.....++...+++..|..+..++..... .++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~ 81 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN------P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYI 81 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccH
Confidence 356667889999999999999999988753211 1 1267888899999999999999999988875422 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
. .+...|.++...++|-+|...|..+...
T Consensus 82 ~----~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 82 K----GYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2 2345678888889999999999887753
No 52
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.23 E-value=0.38 Score=42.24 Aligned_cols=104 Identities=11% Similarity=-0.014 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc-CCcH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE-TKDE 183 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~-~~~~ 183 (408)
.+..-..+|..+...|++++|...+.... +. . ...+.+......+...+++..|..+..++-..... ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~-----~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAW-EL-----H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH-Hh-----h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 45666789999999999999999998753 22 1 22578889999999999999999999888654322 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
......+...|.++...++|.+|-..|..+...
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 108 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 444566777888898999999999999988753
No 53
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=93.21 E-value=0.29 Score=47.26 Aligned_cols=100 Identities=10% Similarity=-0.000 Sum_probs=75.1
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc--H-HHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD--E-TLQ 186 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~--~-~lk 186 (408)
..+|.+++..|++++|.+.+... ++. -+...-++.++..+++++..|+...|...+.+..... .| | +-.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~-i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~---~d~~~~~d~ 175 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEG-IDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI---EDTVSGDNE 175 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-HTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-hcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---ccccccchH
Confidence 57999999999999999999874 121 1114689999999999999999999999998875421 11 1 122
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCC
Q psy7321 187 VHYKVCYARVLDYRR--KFIEAAQRYSELSYKP 217 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r--~f~eAa~~y~e~~~t~ 217 (408)
.......+.+....+ +|.+|...|.++...+
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 334455676666666 8999999999998763
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.13 E-value=0.89 Score=38.21 Aligned_cols=99 Identities=9% Similarity=0.053 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.+.+-..||.+|.+.|++++|.+.+.... +. ++ .-.+.+.....+|...+++..|.....++..... .++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al-~~-----~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVL-KA-----DP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAE 74 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHH
Confidence 35566789999999999999999998853 22 11 1357888899999999999999999888865332 2322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.....+.++...++|..|...|..+...
T Consensus 75 ----~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 102 (184)
T 3vtx_A 75 ----AYYILGSANFMIDEKQAAIDALQRAIAL 102 (184)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2334577777788899999888887653
No 55
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=92.87 E-value=0.96 Score=38.89 Aligned_cols=106 Identities=8% Similarity=-0.044 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCcccccccc------C---CchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQ------Y---SVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL 175 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~------~---~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~ 175 (408)
.+.....+|..+...|+|.+|...+....--..... . ....+..++....++|+..+++..|..+..++-.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455667889999999999999999887532110000 0 0111358889999999999999999999998875
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 176 LQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 176 ~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.. ..+. ..+...|.++...++|-+|-..|..+...
T Consensus 117 ~~--p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 117 ID--KNNV----KALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HS--TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hC--cccH----HHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 42 1232 23445788888899999999999887653
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=92.84 E-value=1.5 Score=35.92 Aligned_cols=99 Identities=6% Similarity=0.051 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
++.....+|..+...|++++|...+....-.. + .....+...+.++...+++..|..++.++.... ..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 77 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----A--FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVK 77 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----S--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----c--cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHH
Confidence 45666788999999999999999998864211 1 125778888999999999999999998886532 12332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...+.++...++|.+|-..|..+...
T Consensus 78 ----~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 105 (186)
T 3as5_A 78 ----VATVLGLTYVQVQKYDLAVPLLIKVAEA 105 (186)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 2445688888889999999999887753
No 57
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.55 E-value=0.82 Score=34.78 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
......+|..+...|++++|.+.+....... + .....+.....++...+++..|..+..++..... .+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~- 78 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAE- 78 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------c-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHH-
Confidence 3455678999999999999999998753211 1 1246788889999999999999999988865321 2322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...+.++...++|.+|...|..+...
T Consensus 79 ---~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 79 ---AWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2345677788888999999999887653
No 58
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.53 E-value=0.89 Score=39.04 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCC-----
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK----- 181 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~----- 181 (408)
.....+|.+|...|++++|.+.+....- . .+ .-...+.....+|...+++..|..+..++-.......
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-----~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 110 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSIN-R-----DK-HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----Cc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH
Confidence 4566788888888888888887776421 1 11 1246677788888888888888888877754322111
Q ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 182 -----DETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 182 -----~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
........+...|.++...++|.+|-..|..+...
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 00001223345677777778888888888877754
No 59
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.45 E-value=1.4 Score=39.47 Aligned_cols=104 Identities=9% Similarity=0.037 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
+.....+|..+...|++++|...+..+.-.. -+.....+.++....+|+..+++..|.....++-....+... .-
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~ 89 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR-VP 89 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch-hH
Confidence 4556788999999999999999999864321 122345788899999999999999999999998754322111 11
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDY--------RRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~--------~r~f~eAa~~y~e~~~t 216 (408)
.-+...|..+.. .++|-+|-..|..+...
T Consensus 90 --~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 90 --QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp --HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 123345777777 89999999999988754
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=92.26 E-value=2.2 Score=37.15 Aligned_cols=100 Identities=9% Similarity=0.062 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH--
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL-- 185 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l-- 185 (408)
....+|..|...|++++|.+.+....- .++ .-.+.+.....+|...+++..|...+.++-.... .++..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~ 114 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIK------KNY-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--GNATIEK 114 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------TTC-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHH------hCc-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHH
Confidence 334589999999999999999887531 111 2567888999999999999999999999875432 23322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 -QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 -k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
....+...|.++...++|.+|-..|..+...
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 115 LYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 2345666788888889999999999999864
No 61
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=92.20 E-value=2.5 Score=37.05 Aligned_cols=97 Identities=13% Similarity=0.215 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
+...+|.+|...|++++|.+.+..... . -........+....++++..+++..|..++.++..... .+.
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~-~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~---- 175 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQ-D----TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--NQP---- 175 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT-C----TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCH----
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh-C----ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--ccH----
Confidence 445566677777777777766665421 0 01122345566666677777777777766666643221 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
..+...+.++...++|.+|...|..+..
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1233456666666667666666666654
No 62
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=92.15 E-value=0.93 Score=35.84 Aligned_cols=97 Identities=16% Similarity=0.010 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
+.....+|..+...|++++|...+....- . ++ .-.+++.....++...+++..|..++.++.... ..++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~-----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~- 78 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAIT-R-----NP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVK- 78 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH-
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh-h-----Cc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHH-
Confidence 44557889999999999999999887432 1 11 125788899999999999999999998886532 22332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+...|.++...++|-+|-..|..+..
T Consensus 79 ---~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 79 ---AHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344578888888999999888887764
No 63
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.55 Score=41.13 Aligned_cols=108 Identities=8% Similarity=0.063 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccC------
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAET------ 180 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~------ 180 (408)
.....+|.+|...|++++|.+.+....--.....-+.......+....+++...+++..|..+..++.......
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 118 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL 118 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHH
Confidence 34567899999999999999998875321100001222347899999999999999999999988886532110
Q ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 181 ---------------KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 181 ---------------~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.++. ....+...|.++...++|-+|-..|..+..
T Consensus 119 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167 (258)
T ss_dssp HHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 1111 122233455556666666666666666554
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=91.85 E-value=0.9 Score=37.24 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
+...+|.++...|++++|.+.+....--. + .....+....+++...+++..|..++.++-.... .++
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~---- 144 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEAN------P-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--NEG---- 144 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC------c-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--cch----
Confidence 34566777777777777777776642111 0 1235666677777777777777777777654321 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
..+...+.++...++|.+|...|..+.
T Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 145 KVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223345666666677777777766654
No 65
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.75 E-value=0.88 Score=37.74 Aligned_cols=106 Identities=13% Similarity=0.049 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccc-----cccCC------chhHHHHHHHHHHHhhhcCChHHHHHHHHHh
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETG-----QKQYS------VDYKLQTYMKIARLYLEDEDPVQAEAFINRA 173 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~-----~~~~~------~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka 173 (408)
.+..-..+|..+...|+|.+|...+....--.. ....+ ......++......|+..++|..|..+..++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 455567889999999999999998876432100 00000 3345788999999999999999999999998
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 174 SLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 174 ~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
-... ..++. .+...|..+...++|-+|-..|..+...
T Consensus 90 l~~~--p~~~~----a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE--ETNEK----ALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS--TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC--CcchH----HHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6532 22332 2345688888899999999999887753
No 66
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=91.70 E-value=0.48 Score=35.61 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=45.0
Q ss_pred HhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecC
Q psy7321 315 SKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 315 sk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~ 365 (408)
.|-=+.+.+++||.-||++.+++-.-+-.+..+|+|.|-||--.+.|+...
T Consensus 16 Ik~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 16 IKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 345577899999999999999999999999999999999999877777654
No 67
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=91.56 E-value=1 Score=42.65 Aligned_cols=109 Identities=11% Similarity=-0.113 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCc--hhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSV--DYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~--~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
.+.....++.++...|++.+|...+....--. ...-+. ......+.....++...+++..|..++.++-......++
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLI-NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 45667789999999999999999888753211 111111 234566677889999999999999999888654433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+. ....+...++++...++|-+|...|.+...
T Consensus 171 ~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 171 QQ-QLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp GG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33 345566788999999999999999887653
No 68
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=91.44 E-value=1.4 Score=33.17 Aligned_cols=65 Identities=9% Similarity=0.005 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ 177 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~ 177 (408)
+.....+|..+...|++++|.+.+....- . .+. -...+.....+++..+++..|.....++-...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~-----~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLIT-A-----QPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH-H-----CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-----CCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34456789999999999999999887532 1 111 24678888999999999999999998887544
No 69
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=91.40 E-value=0.99 Score=41.51 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=57.8
Q ss_pred hhcCcchHHHHHHHhchhhhhhhcchhhhHHHHHHHHHHHHHHhccccCChHHHHHHhC-CCHHHHHHHHHHHHhcCceE
Q psy7321 273 RIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQ-ISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 273 ~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLg-ls~e~~E~~ls~mI~~grl~ 351 (408)
+.+..+++.+|.+.++.... +.. ...-|...|++.=...+++.|++|+++.++++|| ++++++++.+.+- |
T Consensus 107 ~~L~~~~y~~fW~~l~~~~~-l~~-~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~---G--- 178 (226)
T 1rz4_A 107 DLLETCHFQAFWQALDENMD-LLE-GITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY---G--- 178 (226)
T ss_dssp HHHHTTCHHHHHHHSCTTCH-HHH-TSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHH---T---
T ss_pred HHHHcCCHHHHHHHHhcChh-HHH-HHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHC---C---
Confidence 44444788888887754311 111 1234777888888889999999999999999995 8998888888772 3
Q ss_pred EEeccCCcEEEecC
Q psy7321 352 GYVDQIDSIVHFET 365 (408)
Q Consensus 352 akIDqv~giV~F~~ 365 (408)
=++| .+|.|.|..
T Consensus 179 W~vd-~~g~I~~~n 191 (226)
T 1rz4_A 179 WSAD-ESGQIFICS 191 (226)
T ss_dssp CEEC-C--CEECCC
T ss_pred CEEC-CCccEEeCC
Confidence 1355 667777743
No 70
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=91.26 E-value=1.2 Score=36.11 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.......+|..+...|++.+|...+..... . ++ .-.+++.....+|...+++..|.....++-.... .++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 87 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM-L-----DH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPR 87 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHH-h-----CC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcH
Confidence 344557789999999999999999987532 1 11 1246788889999999999999999999875432 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
. +...|.++...++|-+|-..|..+..
T Consensus 88 ~----~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 88 F----PFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp H----HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 33568888888999999999987764
No 71
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=91.11 E-value=2.2 Score=33.95 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=72.0
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHY 189 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y 189 (408)
..+|..+...|++.+|...+....- . ++ .-.+.+....+++...+++..|.....|+-.... .+.+ .
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~-~-----~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~----~ 87 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ-K-----EP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIA----V 87 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-H-----ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH----H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-H-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH----H
Confidence 4578899999999999999887532 1 11 1357788899999999999999999999865432 2333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+...|.++...++|-+|-..|..+...
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345788888899999999999988753
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=91.10 E-value=1.6 Score=41.15 Aligned_cols=110 Identities=6% Similarity=-0.088 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
.++.+...+|.++...|++++|...+..... . ....+.......+.....++...+++..|..+..++-......+++
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALE-E-LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T-CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-c-CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 3567778889999999999999998776422 1 1112233456677788899999999999999998887654444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
..........+.++...++|-+|-..|.+...
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 121 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 121 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555566678888889999999999988764
No 73
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=91.10 E-value=0.95 Score=39.84 Aligned_cols=99 Identities=11% Similarity=-0.036 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|.+|...|++++|.+.+....- . .+ .-...+.....++...+++..|..++.++........+
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~-~-----~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---- 140 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALA-S-----DS-RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER---- 140 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-H-----Cc-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc----
Confidence 4556788899999999999988877531 1 11 12467778888899999999999988887651111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
...+...+.++...++|.+|-..|..+...
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 233445677777788888888888887653
No 74
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=91.10 E-value=0.29 Score=36.87 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=70.8
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHH
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHY 189 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y 189 (408)
..+|..+...|++++|...+....- . .+ ...+.+.....++...+++..|..+..++........+. ..
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~-~-----~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~ 78 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQ-L-----DP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK----DV 78 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHH-H-----CC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH----HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH-h-----Cc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH----HH
Confidence 4578899999999999999887531 1 11 124677888999999999999999998886542210122 23
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcC
Q psy7321 190 KVCYARVLDYR-RKFIEAAQRYSELSYK 216 (408)
Q Consensus 190 ~~~~a~i~~~~-r~f~eAa~~y~e~~~t 216 (408)
+...+.++... ++|.+|-.+|..+...
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 44568888888 9999999999888764
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=91.06 E-value=1.1 Score=40.32 Aligned_cols=107 Identities=16% Similarity=0.011 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhh--------cCChHHHHHHHHHhcccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLE--------DEDPVQAEAFINRASLLQ 177 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~--------~~D~~~A~~~i~Ka~~~~ 177 (408)
......+|..|...|++.+|...+..+.-.. -+.....+.+......++. .+++..|.....++-...
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIY----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 4566789999999999999999998863211 1122345778888899988 999999999998886543
Q ss_pred ccCCc-HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 178 AETKD-ETLQVHY----------KVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 178 ~~~~~-~~lk~~y----------~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+... +...... ....|.++...++|.+|-..|..+...
T Consensus 128 p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 128 PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22111 1111110 134577777788899999988887653
No 76
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=90.93 E-value=1.7 Score=36.88 Aligned_cols=98 Identities=9% Similarity=-0.035 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhh-ccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 108 IRQHLALIYERE-ENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 108 l~~~LA~~~e~~-gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
....+|.+|... |++++|...+..... . -........+....+++...+++..|..+..++..... .+.
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~--- 147 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--QFP--- 147 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCH---
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCc---
Confidence 446788999999 999999999887532 1 11223467788889999999999999998888764321 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
..+...+.++...++|.+|...|..+...
T Consensus 148 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 148 -PAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23445677888888999998888877653
No 77
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=90.92 E-value=1 Score=42.12 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.+...+|.+|...|++++|.+.+.. + .-.+.+...+++++..|++..|...+.++..... .+ ..
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~-~-----------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p--~~--~~ 165 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ-G-----------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDE--DA--TL 165 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT-C-----------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC--HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC-C-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--Cc--HH
Confidence 3467899999999999999999887 1 2246888889999999999999999988865321 12 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
..+-.....++...++|-+|...|.++...
T Consensus 166 ~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 166 TQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 222222233334458999999999998764
No 78
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=90.90 E-value=2.9 Score=38.21 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVH 188 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~ 188 (408)
...+|..+...|++++|.+.+....-.. .-+.......+.....++...+++..|..+..++-... ..++.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~---- 307 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVN---- 307 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHH----
Confidence 4456889999999999999998864322 12334456778889999999999999999998886532 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 189 YKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 189 y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...|.++...++|.+|-..|..+...
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3446788888899999999999998865
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=90.88 E-value=1.1 Score=34.25 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVH 188 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~ 188 (408)
...+|..+...|++++|.+.+....-.. + .-...+...++++...+++..|..+..++..... .++.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~---- 70 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD------P-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAE---- 70 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHH----
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC------C-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--CchH----
Confidence 4568899999999999999988753211 1 1245677789999999999999999888764321 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 189 YKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 189 y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+...+.++...++|-+|-..|.++..
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 233457777777888888888877664
No 80
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=90.88 E-value=1.7 Score=33.24 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
....+|.++...|++++|.+.+....-.. + .-...+.....++...+++..|..+..++..... .+..
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~--- 104 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELD------P-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAE--- 104 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC------C-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChH---
Confidence 34568999999999999999988753211 1 1245677889999999999999999888765321 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.....+.++...++|.+|...|.++..
T Consensus 105 -~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 105 -AWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp -HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 223467777778889888888877653
No 81
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.71 E-value=1.4 Score=36.46 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.......+|..+...|++.+|...+..... . ++ .-.+.+.....+|...+++..|.....++-.... .++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~ 90 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV-L-----DH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--XEPR 90 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH-c-----Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCch
Confidence 445567789999999999999999987531 1 11 1246778889999999999999999999865422 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
. +...|..+...++|-+|-.+|..+..
T Consensus 91 ~----~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 91 F----PFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp H----HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 33568888889999999999987764
No 82
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=90.57 E-value=2.7 Score=42.85 Aligned_cols=101 Identities=6% Similarity=-0.108 Sum_probs=75.5
Q ss_pred HHHHHHhhccHHHHHHHHhcCccccccccCCch--hHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc---ccCCcHHHH
Q psy7321 112 LALIYEREENWRDAANVLVGIPLETGQKQYSVD--YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ---AETKDETLQ 186 (408)
Q Consensus 112 LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~---~~~~~~~lk 186 (408)
.+.-+..+|+|++|...+....- ...+.+++. .-+..+-..+.+|...++|..|..+..|+-... ....+++.-
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~-~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLE-KQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH-HHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 45557789999999988876532 224445554 368888899999999999999999988886432 334566664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.. +.-.|.++...++|-+|-..|..+.
T Consensus 394 ~~-l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 394 MA-VMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44 4567888888999999998888775
No 83
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=89.92 E-value=1.9 Score=36.30 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCC
Q psy7321 102 EEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK 181 (408)
Q Consensus 102 E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~ 181 (408)
.-+.......+|..+...|++++|...+..... . ++ .-.++|......|...+++..|.....|+-.... .
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~-----~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--~ 102 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-Y-----DF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--N 102 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--S
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----CC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--C
Confidence 344566678899999999999999999987531 1 11 2356788899999999999999999999976432 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 182 DETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 182 ~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+++. +...|..+...++|-+|-.+|..+...
T Consensus 103 ~~~~----~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 103 DYTP----VFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp CCHH----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHH----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3332 335688888899999999999987753
No 84
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=89.89 E-value=2.5 Score=40.03 Aligned_cols=103 Identities=20% Similarity=0.143 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
..+..++..+|..+...|++++|.+.|..+.. . .+ .++ .......+++..++|..|..++.++... .+
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-~-----~p-~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d 166 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPV-A-----GS-EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----PD 166 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-T-----TC-HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SC
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c-----CC-chH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CC
Confidence 35788999999999999999999999998753 1 12 333 5556667999999999999999765432 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKP 217 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~ 217 (408)
+.+...-+.+.+..+...++|-+|-.+|......+
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 44444445567888888999999999999987543
No 85
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=89.87 E-value=2.9 Score=33.70 Aligned_cols=97 Identities=13% Similarity=0.001 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
..+...+|.++...|++++|...+....- . .+ .-...+.....++...+++..|..++.++-.... .++..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~-----~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~ 117 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIE-L-----DK-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDA 117 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----Cc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHH
Confidence 34556789999999999999999887431 1 11 1246788899999999999999999998865322 34433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSEL 213 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~ 213 (408)
.. ....+..+...++|.+|-..|...
T Consensus 118 ~~--~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 118 KM--KYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHcccch
Confidence 22 222344455678888888877654
No 86
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.83 E-value=1.8 Score=44.27 Aligned_cols=108 Identities=9% Similarity=0.038 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCch--hHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc---c
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVD--YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA---E 179 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~---~ 179 (408)
.+.....||.+|...|+|++|...+... ++...+..+.. .-+..+.....+|...|++..|..++.||-.... .
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~a-L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRM-VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 5888899999999999999999988764 22323333333 3677888999999999999999999999975432 2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 180 TKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 180 ~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.+++... .-+...+..+...+.|.+|-..|+.+-
T Consensus 429 ~~Hp~~~-~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 429 PSHPITK-DLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp TTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 233556666667788999888888764
No 87
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=89.60 E-value=1 Score=39.98 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVH 188 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~ 188 (408)
...+|..+...|++++|.+.+....- . . + .-.+.+.....+|...+++..|..+..++-... .+++....
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~-~-~----p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~ 75 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEA-K-K----Y-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV---NATKAKSA 75 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH-T-T----C-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CTTTCCHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH-h-C----C-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc---CchhHHHH
Confidence 35678888999999999988887532 1 1 1 112356677888889999999988888886521 23344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 189 YKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 189 y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...|.++...++|.+|-..|..+...
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4566788888888899998888887753
No 88
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=89.37 E-value=2.4 Score=39.66 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCc----hhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCC
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSV----DYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK 181 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~----~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~ 181 (408)
......||.+|...|++++|.+.+....--. ...... .....++.....++...+++..|..+..++........
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 211 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence 4456788999999999999999988753211 000000 01234455668899999999999999988865432211
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 182 DETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 182 ~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
++. .+...|.++...++|-+|-..|..+...
T Consensus 212 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 212 DPD----LQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp CHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333 2345788888899999999999988754
No 89
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=89.29 E-value=1 Score=40.05 Aligned_cols=98 Identities=9% Similarity=-0.057 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVH 188 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~ 188 (408)
...+|.+|...|++++|.+.+....- . .-+.......+.....++...+++..|..+..++-.... .+.+
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~---~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~~~---- 109 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFS-K---VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT--TRLD---- 109 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-T---SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTH----
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh-c---cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc--ccHH----
Confidence 45688899999999999999887642 2 123344567788999999999999999999988875332 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 189 YKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 189 y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...|.++...++|.+|-..|..+...
T Consensus 110 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 2445788888899999999999988765
No 90
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=89.17 E-value=1.4 Score=33.22 Aligned_cols=38 Identities=8% Similarity=0.138 Sum_probs=35.1
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccC
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQI 357 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv 357 (408)
.+|..+||+.||+|...+.+.+.+|..+|.|...-+.+
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 89999999999999999999999999999998876555
No 91
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=89.15 E-value=1.2 Score=42.52 Aligned_cols=109 Identities=15% Similarity=0.074 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccc-cccCC-------chhHHHHHHHHHHHhhhcCChHHHHHHHHHh
Q psy7321 102 EEQVASIRQHLALIYEREENWRDAANVLVGIPLETG-QKQYS-------VDYKLQTYMKIARLYLEDEDPVQAEAFINRA 173 (408)
Q Consensus 102 E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~-~~~~~-------~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka 173 (408)
.-..+.....+|..|...|++.+|...+....--.. ....+ ...+...+.....+|+..+++..|..+.+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345677788999999999999999999886432110 00001 1224789999999999999999999999999
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 174 SLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 174 ~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
-.... .+.. .+...|..+...++|-+|-..|..+...
T Consensus 223 l~~~p--~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 223 LELDS--NNEK----GLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHCT--TCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCC--CcHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 76432 2322 2345688888889999999999888753
No 92
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=89.04 E-value=1.7 Score=42.39 Aligned_cols=106 Identities=10% Similarity=0.004 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccc----------cCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHh
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQK----------QYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRA 173 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~----------~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka 173 (408)
+.+.....+|..+.+.|+|++|.+.+....--. .. .-........+.....+|+..++|..|..+..++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 345566788999999999999999888753210 00 0022346789999999999999999999999998
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 174 SLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 174 ~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
-.... .+.+ .+...|..+...++|-+|-..|..+...
T Consensus 300 l~~~p--~~~~----a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 300 LEIDP--SNTK----ALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCT--TCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCc--hhHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 76321 2222 2345678888889999999999887653
No 93
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=89.02 E-value=3.6 Score=35.06 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVH 188 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~ 188 (408)
...+|..+...|++++|...+.... +. ....+......|...+++..|..+..++-... ..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~---- 72 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DP---------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAV---- 72 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchH----
Confidence 4678999999999999999998862 11 24688899999999999999999998886532 12322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 189 YKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 189 y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...|.++...++|.+|-..|..+...
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 2345688888889999999999887753
No 94
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=89.01 E-value=2.2 Score=36.89 Aligned_cols=93 Identities=14% Similarity=0.200 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVH 188 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~ 188 (408)
...+|.+|...|++++|.+.+....-.. + .-.+.+.....+++..+++..|..+..++..... .+..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~---- 160 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-----M--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE--NDTE---- 160 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-----C--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT--TCHH----
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-----C--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--ccHH----
Confidence 3445555555555555555554432100 0 0123444555555555555555555555433211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 189 YKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 189 y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.+...+.++...++|.+|-..|..+.
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22234444555555555555555443
No 95
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=88.64 E-value=2 Score=38.00 Aligned_cols=100 Identities=9% Similarity=-0.061 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
........+|..|...|++++|...+....- . ++ .-.+.+.....+|...+++..|..+..++-.... .+.
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~-----~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~ 111 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALA-I-----RP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TYN 111 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCT
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-c-----CC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc--ccc
Confidence 4567778899999999999999999887532 1 11 1346788889999999999999999988875422 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
..+...|.++...++|.+|...|..+...
T Consensus 112 ----~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 112 ----YAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 22345678888889999999999888753
No 96
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=88.57 E-value=7.9 Score=33.42 Aligned_cols=70 Identities=13% Similarity=0.017 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccC-CchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQY-SVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~-~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
......+|.+|...|++++|.+.+....--. .... -.....+.+.....++...+++..|..+..++-..
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 4556789999999999999999998753211 0000 01124578999999999999999999999998753
No 97
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=88.54 E-value=2 Score=37.12 Aligned_cols=98 Identities=11% Similarity=-0.040 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
......+|.+|...|++++|.+.+....-.. ......+...++++...+++..|..++.++..... .+..
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~- 126 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELD-------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--ENGD- 126 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--CSHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHH-
Confidence 3455678999999999999999988753211 12357788899999999999999999988865332 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...+.++...++|.+|-..|..+...
T Consensus 127 ---~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 127 ---LFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp ---HHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2445688888889999999999887753
No 98
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=88.47 E-value=2.4 Score=38.49 Aligned_cols=105 Identities=9% Similarity=0.090 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccc--cccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETG--QKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~--~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
..+...+|.+|...|++++|...+....--.. ....+.....+.+.....++...+++..|..++.++-.... .+.
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~ 270 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--QNA 270 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCS
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--cch
Confidence 34566789999999999999998876532110 01111133457888999999999999999999988865322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
. .+...|.++...++|.+|...|..+...
T Consensus 271 ~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 271 S----TYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp H----HHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred H----HHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 2 2345688888899999999999988764
No 99
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=88.45 E-value=3.8 Score=34.01 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHH-hhhcCCh--HHHHHHHHHhccccccCCcH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARL-YLEDEDP--VQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL-~L~~~D~--~~A~~~i~Ka~~~~~~~~~~ 183 (408)
.....+|.+|...|++++|...+....--. + .-.+.+.....+ +...+++ ..|..++.++..... .++
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p-~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p--~~~ 115 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR------G-ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS--NEI 115 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------C-SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT--TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------C-CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC--CcH
Confidence 456789999999999999999988753211 1 124677778888 8889998 999999988865321 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
. .+...|.++...++|.+|-..|..+...
T Consensus 116 ~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 116 T----ALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred H----HHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 2 2345688888889999999999888764
No 100
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=88.40 E-value=1.9 Score=36.57 Aligned_cols=97 Identities=9% Similarity=-0.075 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhc-CChHHHHHHHHHhccccccCCcHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLED-EDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~-~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
....+|.+|...|++++|.+.+....... + .-...+....+++... +++..|..++.++........+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---- 112 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIK------P-DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP---- 112 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH----
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC------C-CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch----
Confidence 44567777888888888887776642111 1 1234666777778888 8888888777776541111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
...+...+.++...++|.+|-..|.++..
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22234556667777777777777777654
No 101
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=88.33 E-value=1.2 Score=40.54 Aligned_cols=96 Identities=11% Similarity=-0.004 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|.+|...|++++|.+.+....--. +. ....+....++|...+++..|..++.++..... .+.
T Consensus 126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~--- 193 (330)
T 3hym_B 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLM-----KG--CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP--EDP--- 193 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----TT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCH---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----cc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CCh---
Confidence 445688999999999999999988753211 11 224456688999999999999999988865432 232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
..+..++.++...++|.+|-..|..+..
T Consensus 194 -~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 194 -FVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2345678899999999999999987765
No 102
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.26 E-value=7.3 Score=36.66 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhCCCCcchhHHHHhhhcC-cccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhh--hhhhcchhh
Q psy7321 224 RITALKSALICTILASAGQQRSRMLATLFKD-ERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQ--KAITVDGSS 300 (408)
Q Consensus 224 ~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d-~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~--~~~~~d~~~ 300 (408)
....+.+-+++.+...-.++-+..|..+-.. +.+.+-|..+.-++.. +.+-.+.+.+|.+.++... .....--..
T Consensus 102 ~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le--~al~eGnY~kff~l~~~~~~p~~~~~~f~d 179 (274)
T 4b4t_T 102 KSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLD--RWLMEGSYQKAWDLLQSGSQNISEFDSFTD 179 (274)
T ss_dssp HHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHH--HHHHHTCSHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHH--HHHHcCCHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3455555566655544444545455555332 2344455544322221 2222266777766553211 111111124
Q ss_pred hHHHHHHHHHHHHHHhccccCChHHHHHHhCC-CHHHHHHHHHHHHhcCceEEEeccCCcEEEecC
Q psy7321 301 ILERAVTEHNLLSASKLYNNISFPELGALLQI-SAAKAEKIASHMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 301 ~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgl-s~e~~E~~ls~mI~~grl~akIDqv~giV~F~~ 365 (408)
.|-.+++..-+..+.+.|.+|+++.++++|++ +++++...+.+ .-. ++ .+|-|+|..
T Consensus 180 ~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~----~gW--~~--~~~~v~F~~ 237 (274)
T 4b4t_T 180 ILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE----RNW--PI--VNSKVYFNN 237 (274)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH----TTC--CC--CSSCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH----cCC--EE--eCCEeEECC
Confidence 67788999999999999999999999999999 45666655543 221 23 256666754
No 103
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=88.15 E-value=4.1 Score=37.79 Aligned_cols=99 Identities=12% Similarity=-0.121 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....++.+|...|++++|.+.+..+.- . -++.....+..-.+.++...+++..|.....++.... ..++.+
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~-~----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~- 202 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQD-Q----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLL- 202 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh-h----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHH-
Confidence 4567789999999999999999988632 1 1222222222233455667799999999998887542 234433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+...|..+...++|-+|-..|.++...
T Consensus 203 ---~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 203 ---LNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445788889999999999999998864
No 104
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=88.10 E-value=3.7 Score=37.51 Aligned_cols=106 Identities=12% Similarity=0.023 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCc-------hhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSV-------DYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE 179 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~-------~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~ 179 (408)
.....+|.+|...|++++|...+....- . ...... -.++...+..+..++..+++..|...+.++.....
T Consensus 189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~- 265 (359)
T 3ieg_A 189 EAFYKISTLYYQLGDHELSLSEVRECLK-L-DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP- 265 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 4556788889999999999888876531 1 110000 01233345668889999999999999988865432
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 180 TKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 180 ~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.++......+...|.++...++|.+|-..|..+...
T Consensus 266 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 266 -SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp -SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 355565666677888898899999999999988753
No 105
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.64 E-value=0.86 Score=34.73 Aligned_cols=39 Identities=8% Similarity=0.122 Sum_probs=34.5
Q ss_pred HHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 313 SASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 313 ~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
.+-+-...+++++||+.||+|+.-+...+..+...|.+.
T Consensus 9 ~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 9 DLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 334457899999999999999999999999999999873
No 106
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=87.37 E-value=3.5 Score=40.08 Aligned_cols=100 Identities=16% Similarity=0.054 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
+.+..-..+|..+...|++.+|...+....... + ....+......|+..+++..|...++++-... ..+.
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~ 73 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK------E--DPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYS 73 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC------c--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHH
Confidence 355666889999999999999999999864211 1 26788899999999999999999999886532 2232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKP 217 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~ 217 (408)
..+...|.++...++|-+|-..|..+....
T Consensus 74 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 74 ----KVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred ----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 234457888999999999999999887653
No 107
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=87.34 E-value=2.6 Score=39.38 Aligned_cols=99 Identities=9% Similarity=0.012 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
+.+...++.++...|++++|...+....--. +.....+.+.....+|...+++..|..+..++-.... .+..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~- 248 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-----GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP--EDYS- 248 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHS-----CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHH-
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH-
Confidence 4555666777777777777777776653211 1111234556667777777777777777766654221 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+...|.++...++|.+|-..|..+..
T Consensus 249 ---~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 249 ---LWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 233456666666777777777766654
No 108
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=86.96 E-value=1.9 Score=43.28 Aligned_cols=104 Identities=16% Similarity=0.046 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....++.+|...|++++|.+.+..+.-.......++....+.+...+.+|...|++..|..+..++.... ..+.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~--- 550 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDA--- 550 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCH---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCh---
Confidence 34567889999999999999998875321100012333347899999999999999999999998886532 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
..+...+.++...++|.+|...|..+...
T Consensus 551 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 551 -NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33456788888899999999999988754
No 109
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=86.82 E-value=3.6 Score=31.37 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
.+...+|.+|...|++++|...+....--..............+.....++...+++..|..+..++-..
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4456789999999999999999887532110101112234788899999999999999999999888653
No 110
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=86.70 E-value=5.4 Score=39.95 Aligned_cols=95 Identities=6% Similarity=-0.103 Sum_probs=71.1
Q ss_pred hhccHHHHHHHHhcCccccccccCCch--hHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc---ccCCcHHHHHHHHHH
Q psy7321 118 REENWRDAANVLVGIPLETGQKQYSVD--YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ---AETKDETLQVHYKVC 192 (408)
Q Consensus 118 ~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~---~~~~~~~lk~~y~~~ 192 (408)
..|+|++|..++....- ...+.+++. .-+..+-..+.+|...|+|..|..+..|+-... ....+++.-.. +.-
T Consensus 310 ~~g~~~eA~~~~~~~L~-i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~-l~n 387 (433)
T 3qww_A 310 HYKSPSELLEICELSQE-KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM-WLK 387 (433)
T ss_dssp TTSCHHHHHHHHHHHHH-HHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH-HHH
T ss_pred hccCHHHHHHHHHHHHH-HhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH-HHH
Confidence 45789999998876432 223445554 467888899999999999999999998886432 23456676444 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy7321 193 YARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 193 ~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.|.++...++|.+|-..|..+.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHH
Confidence 7888999999999999988775
No 111
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=86.32 E-value=3.5 Score=36.12 Aligned_cols=95 Identities=16% Similarity=0.066 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhh-----------ccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 108 IRQHLALIYERE-----------ENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 108 l~~~LA~~~e~~-----------gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
....||.++... |++++|...+....- . ++ .-.+.+....+++...+++..|.....++-..
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~-----~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER-V-----NP-RYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH-h-----Cc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 345677888888 999999999887531 1 11 13467788899999999999999999998764
Q ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 177 QAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 177 ~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
. .+++. +...|.++...++|-+|-..|..+...
T Consensus 148 ~---~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 148 E---DTPEI----RSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp C---CCHHH----HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred c---cchHH----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 34443 335688888899999999999988753
No 112
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=86.30 E-value=4.1 Score=40.81 Aligned_cols=95 Identities=9% Similarity=-0.002 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
....++..|...|++++|.+.+..+.-.. + .-...+...+..|...+++..|..+..++.... ..++.
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~--- 476 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF------Q-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPL--- 476 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT------T-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH---
Confidence 44567777888888888877777643111 0 012455556666777777777777666664321 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+.+++.++...++|.+|-..|.++..
T Consensus 477 -~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 477 -LLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 244566666666666666666665543
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=86.28 E-value=12 Score=32.71 Aligned_cols=106 Identities=8% Similarity=0.021 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhH-HHHHHHHHHHhh------------------hcCChHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYK-LQTYMKIARLYL------------------EDEDPVQA 166 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~K-le~~L~i~RL~L------------------~~~D~~~A 166 (408)
......+|..|...|+|++|...+..+.-.. +.... -+.+......+. ..+++.+|
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 115 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAA 115 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHH
Confidence 3456778999999999999999998863211 11111 123333333333 36789999
Q ss_pred HHHHHHhccccccCC-cHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 167 EAFINRASLLQAETK-DETLQV----------HYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 167 ~~~i~Ka~~~~~~~~-~~~lk~----------~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.....++-....+.. -++... .+....|.++...++|.+|...|..+...
T Consensus 116 ~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 116 FSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 888888865433221 122111 12234567777788899999999887754
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=86.15 E-value=6.9 Score=34.22 Aligned_cols=102 Identities=18% Similarity=0.096 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
....+|..+...|+|++|...+..+.-.- -+.....+.++.....|...+||..|.....++-....+ ++....
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~--~~~~~~ 79 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRY----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT--HPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CCcHHH
Confidence 34667889999999999999999864211 112234577888899999999999999998888653322 222111
Q ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcC
Q psy7321 188 HYKVCYARVLDY------------------RRKFIEAAQRYSELSYK 216 (408)
Q Consensus 188 ~y~~~~a~i~~~------------------~r~f~eAa~~y~e~~~t 216 (408)
-++ ..|..+.. .+++.+|...|..+...
T Consensus 80 a~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 80 VMY-MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHH-HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 111 22333322 36788888888887764
No 115
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=86.15 E-value=3.7 Score=34.19 Aligned_cols=96 Identities=15% Similarity=0.031 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....||.+|...|++++|...+....... ......+......+...+++..|.....++..... .+++.
T Consensus 40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--~~~~~- 109 (184)
T 3vtx_A 40 ETLLKLGKTYMDIGLPNDAIESLKKFVVLD-------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT--VYADA- 109 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHH-
Confidence 345778999999999999999988753221 11245667778899999999999999988875432 33332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
....|.++...++|-+|-..|..+..
T Consensus 110 ---~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 110 ---YYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 34568888888999999999988765
No 116
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=85.88 E-value=3.5 Score=31.32 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
......||..|...|++++|.+.+.... +. ++. -...+.....+|...+++..|...+.++-..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~-----~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELV-ET-----DPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----STT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456788999999999999999888753 11 111 2347888899999999999999988888654
No 117
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=85.80 E-value=3.7 Score=38.09 Aligned_cols=95 Identities=13% Similarity=0.074 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.+...+|.+|...|++++|...+....- . .+ .-...+....+++...+++..|..+..++-... ..+.
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~--- 285 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALS-V-----RP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYI--- 285 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----Cc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcH---
Confidence 3445566666666666666666655321 1 00 113455566666666666666666666654321 1121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
..+...|.++...++|.+|...|..+.
T Consensus 286 -~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 286 -RSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 122345555566666666666665554
No 118
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=85.73 E-value=2.4 Score=42.39 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccc-cccCC-------chhHHHHHHHHHHHhhhcCChHHHHHHHHHhc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETG-QKQYS-------VDYKLQTYMKIARLYLEDEDPVQAEAFINRAS 174 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~-~~~~~-------~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~ 174 (408)
...+.....+|..|.+.|+|.+|...+....--.. ....+ ...+...+......|+..++|..|..+.+++-
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34567778899999999999999998886432110 00011 12347889999999999999999999999997
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 175 LLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 175 ~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.... .+. ..+...|..+...++|-+|-..|..+...
T Consensus 345 ~~~p--~~~----~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 345 GLDS--ANE----KGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHST--TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCC--ccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6432 232 22345688888889999999999998864
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.39 E-value=3.7 Score=37.78 Aligned_cols=96 Identities=16% Similarity=0.002 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|..+...|++++|...+..... . .+ .-..++.....+|+..+++..|.....++-... ..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~-- 73 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAIT-R-----NP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVK-- 73 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHH--
Confidence 3456789999999999999999887532 1 11 135778889999999999999999999987642 22332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+...|..+...++|-+|-..|..+..
T Consensus 74 --~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 74 --AHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234568888888999999999988764
No 120
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=85.38 E-value=3.1 Score=37.61 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.+...+|.+|...|++++|.+.+....- . .+ .-.+.+....+++...+++..|..+..++-.... .+..
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~-- 241 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVE-L-----RP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINP--GYVR-- 241 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-h-----CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHH--
Confidence 4455667777777777777777665421 1 00 1134566667777777777777777666643211 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.+...+.++...++|.+|...|..+.
T Consensus 242 --~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 242 --VMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22345666666666666666666554
No 121
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=85.23 E-value=2.7 Score=32.60 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
......+|.+|...|++++|.+.+..+.-.. -+.....+.+....+++...+++..|..++.++-..
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRY----PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHC----CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778999999999999999998753211 112234677888999999999999999999888653
No 122
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=85.20 E-value=4.5 Score=38.74 Aligned_cols=107 Identities=13% Similarity=0.031 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCc------hhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSV------DYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAE 179 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~------~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~ 179 (408)
......+|.+|...|++++|...+..+.--. ...... -.+++..+.....+...+++..|..++.++....
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-- 287 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-- 287 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 3456778999999999999999988763111 100000 0122333556899999999999999998886532
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 180 TKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 180 ~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
..++......+.+.+.++...++|.+|-..|..+..
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 235566666777889998889999999999998764
No 123
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=85.19 E-value=1.9 Score=33.57 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=62.5
Q ss_pred hhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHH
Q psy7321 118 REENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVL 197 (408)
Q Consensus 118 ~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~ 197 (408)
..|++++|...+....- . ..++..-...+.....+|...+++..|..+..++-.... .+++ .+...|..+
T Consensus 2 ~~g~~~~A~~~~~~al~-~---~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~----~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA-S---GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQA----LRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHS-S---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH----HHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH-c---CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchH----HHHHHHHHH
Confidence 35778888888776421 1 122455678899999999999999999999999865432 2333 234578888
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy7321 198 DYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 198 ~~~r~f~eAa~~y~e~~~t 216 (408)
...++|-+|-..|..+...
T Consensus 72 ~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8899999999999887653
No 124
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=85.13 E-value=0.94 Score=35.35 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 312 LSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 312 ~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
+.+-+-...+++++||+.||+|+.-+...+..+...|.|.=.
T Consensus 8 l~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 8 RDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 333445789999999999999999999999999999988543
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=85.04 E-value=4.7 Score=38.61 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
.+.....+|..|...|++.+|...+..+.-.. + .-...+......|...+++..|..+..++-.... .+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~-- 93 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD------P-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM--DF-- 93 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------C-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--Cc--
Confidence 35556778999999999999999998753211 1 1267788889999999999999999888865321 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
...+...|.++...++|.+|-..|..+...
T Consensus 94 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 94 --TAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123 (450)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 233456788888889999999999988764
No 126
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=85.01 E-value=4.3 Score=31.16 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
.+...+|.+|...|++++|.+.+....- . ++ .-.+.+.....+|...+++..|..++.++-..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALD-F-----DP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH-H-----CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567789999999999999998887431 1 11 12457778899999999999999998888654
No 127
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=84.79 E-value=3.1 Score=37.65 Aligned_cols=101 Identities=11% Similarity=-0.000 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH--
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE-- 183 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~-- 183 (408)
......+|.+|...|++++|...+....- . .+ ...+.+....++|+..+++..|..+..++........+.
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALD-I-----NP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c-----CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 34567889999999999999999987532 1 11 124577888999999999999999998886433221111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 184 ----TLQVHYKVCYARVLDYRRKFIEAAQRYSEL 213 (408)
Q Consensus 184 ----~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~ 213 (408)
......+...+..+...+++-+|...|...
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 113444556788888888888888777644
No 128
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=84.06 E-value=6.6 Score=33.99 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=69.9
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHH----------------HHHHhhhcCChHHHHHHHHHh
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMK----------------IARLYLEDEDPVQAEAFINRA 173 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~----------------i~RL~L~~~D~~~A~~~i~Ka 173 (408)
...|..+...|++++|...+....- . ++ .-.+.+.. ...+|...+++..|.....++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIA-L-----NI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-H-----CH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-h-----CC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4567788899999999999887521 1 11 12334444 899999999999999999998
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 174 SLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 174 ~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
-... ..+.+ .+...|.++...++|-+|-..|..+...
T Consensus 81 l~~~--p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 81 LQKA--PNNVD----CLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHC--TTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHC--CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6532 23333 2345688889999999999999998864
No 129
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=83.91 E-value=2.2 Score=32.67 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHHHHhccc---cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 309 HNLLSASKLYN---NISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 309 hNi~~isk~Ys---~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
..|+.+-+-.. .+|..+||+.||+|...+.+.|.+|-.+|.|.-.
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 33444444445 8999999999999999999999999999999644
No 130
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=83.86 E-value=12 Score=32.59 Aligned_cols=96 Identities=7% Similarity=-0.151 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
....+|..+...|++++|...+....- .+++ -.+.+.....++...+++..|...+.++-.... .+.+.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a-- 75 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALK------ENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGG-- 75 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT------TSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHH--
Confidence 446789999999999999999887421 1111 256788889999999999999999999865322 23332
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcC
Q psy7321 188 HYKVCYARVLDYR-----------RKFIEAAQRYSELSYK 216 (408)
Q Consensus 188 ~y~~~~a~i~~~~-----------r~f~eAa~~y~e~~~t 216 (408)
+...|.++... ++|-+|-..|..+...
T Consensus 76 --~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 76 --YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp --HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence 33467777777 9999999999988753
No 131
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=83.75 E-value=6.6 Score=39.14 Aligned_cols=97 Identities=9% Similarity=-0.009 Sum_probs=71.4
Q ss_pred HHhhccHHHHHHHHhcCccccccccCCch--hHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc---ccCCcHHHHHHHH
Q psy7321 116 YEREENWRDAANVLVGIPLETGQKQYSVD--YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ---AETKDETLQVHYK 190 (408)
Q Consensus 116 ~e~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~---~~~~~~~lk~~y~ 190 (408)
+...|+|++|...+.... +...+.+++. .-+..+-..+.+|...++|..|..+..|+-... ....+++.-.. +
T Consensus 297 ~~~~g~~~~a~~~~~~~L-~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~-l 374 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAII-SSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ-V 374 (429)
T ss_dssp HHHTTCHHHHHHHHHHHH-TCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH-H
T ss_pred HHhhccHHHHHHHHHHHH-HhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH-H
Confidence 346789999998877643 2223344444 478888899999999999999999988886432 33456666444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 191 VCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 191 ~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.-.|.++...++|.+|-..|..+.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 557888888999999998888775
No 132
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=83.67 E-value=4.8 Score=39.14 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhh---cCChHHHHHHHHHhccccccCCcHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLE---DEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~---~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
....+|.+|...|++++|...+....-.. ............+.....+++. .+++..|..++.++..... .+..
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~ 450 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--RSEQ 450 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHH
Confidence 44567888888889988888887653211 1111111225578889999999 9999999999988865322 2322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...+.++...++|.+|...|..+...
T Consensus 451 ----~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 451 ----AKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445788888899999999999988764
No 133
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=83.54 E-value=4.1 Score=40.00 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
..+...+|.+|...|++++|...+....-.. +. -.+.+.....++...+++..|..++.++..... .++..
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~ 380 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN------PE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP--TLPEV 380 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHH
Confidence 4567889999999999999999988753211 11 126677889999999999999999988865432 23332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+...|.++...++|.+|-..|..+..
T Consensus 381 ----~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 381 ----PTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33568888899999999999988664
No 134
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=83.23 E-value=2.8 Score=32.02 Aligned_cols=36 Identities=11% Similarity=0.287 Sum_probs=33.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEe
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYV 354 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akI 354 (408)
..+++.+||+.+|+|+.-+-..+.+|...|-+...-
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 568999999999999999999999999999998766
No 135
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=83.21 E-value=6 Score=34.73 Aligned_cols=95 Identities=6% Similarity=-0.097 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|.+|...|++++|.+.+....--. + .-.+.+.....++...+++..|..++.++..... .+....
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~ 148 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD------P-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRS 148 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC------c-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHH
Confidence 345678999999999999999998753211 1 1247788899999999999999999999875332 233221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
....+....++|.+|-..|.....
T Consensus 149 -----~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 149 -----LWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp -----HHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhcCHHHHHHHHHHHHh
Confidence 122333556889999999877664
No 136
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=83.02 E-value=13 Score=28.20 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=35.2
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEecc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQ 356 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDq 356 (408)
...++..+||+.+|++...+-..+.+|...|-+...-|.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 457999999999999999999999999999999876654
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=82.84 E-value=12 Score=35.41 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
...+.+...||.+|...|++++|...+.... +. ++ .-...+.....+|...+++..|...+.++-.... .+
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al-~~-----~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~ 263 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKAL-EL-----DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NN 263 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CC
Confidence 3456778899999999999999999988753 21 11 1356788899999999999999999999875432 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQ-RYSELS 214 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~-~y~e~~ 214 (408)
... +...+.++...+++.+|.+ .|..++
T Consensus 264 ~~a----~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 264 KAA----KTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 3345777777788888744 444444
No 138
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=82.04 E-value=6.2 Score=38.71 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccC
Q psy7321 101 FEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAET 180 (408)
Q Consensus 101 ~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~ 180 (408)
+-...+.....++.++...|++++|...+....- .++. .+.+.....++...+++..|..++.++.....
T Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~------~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 307 (537)
T 3fp2_A 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESIN------LHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNP-- 307 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh------cCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC--
Confidence 3334566778899999999999999999988532 1222 67888899999999999999999988865322
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 181 KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 181 ~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.++. .+...|.++...++|.+|-..|..+...
T Consensus 308 ~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 308 EYPP----TYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp TCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 2333 2445788888889999999999988753
No 139
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=81.71 E-value=6.1 Score=40.03 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
....+|..|...|++++|.+.+....- . ++ .-.+.+.....+|...+++..|..++.++-... ..+.+
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~--- 92 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLA-L-----HP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--PEHPG--- 92 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT-T-----ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHH---
Confidence 344556666666666666666554321 1 11 113455555666666666666666655554321 11221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 188 HYKVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 188 ~y~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
.+...|.++...++|.+|-..|..+.
T Consensus 93 -~~~~la~~~~~~g~~~~A~~~~~~al 118 (568)
T 2vsy_A 93 -IALWLGHALEDAGQAEAAAAAYTRAH 118 (568)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12234555555555555555555544
No 140
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=81.09 E-value=8.1 Score=38.51 Aligned_cols=96 Identities=8% Similarity=0.014 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhc---------CChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLED---------EDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~---------~D~~~A~~~i~Ka~~~ 176 (408)
......||.+|...|++++|.+.+....- .++. ...+.....++... +++..|..++.++-..
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALT------HCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT------TCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 45667899999999999999999987531 2233 38888999999999 9999999999998754
Q ss_pred cccCCcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhc
Q psy7321 177 QAETKDETLQVHYKVCYARVLDYR--------RKFIEAAQRYSELSY 215 (408)
Q Consensus 177 ~~~~~~~~lk~~y~~~~a~i~~~~--------r~f~eAa~~y~e~~~ 215 (408)
.. .++.. +...|.++... ++|.+|-..|..+..
T Consensus 209 ~p--~~~~~----~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 209 DV--LDGRS----WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp CT--TCHHH----HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CC--CCHHH----HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 32 23332 33567777777 999999999998875
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=81.06 E-value=10 Score=31.06 Aligned_cols=65 Identities=9% Similarity=-0.011 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ 177 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~ 177 (408)
..+...+|.+|...|++++|...+.... +. ++. -...+.....+|...+++..|..++.++-...
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~-----~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELAT-VV-----DPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH-Hh-----CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3456788999999999999999988742 11 111 26788889999999999999999999987644
No 142
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=80.93 E-value=3.8 Score=38.01 Aligned_cols=99 Identities=6% Similarity=-0.069 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH--
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE-- 183 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~-- 183 (408)
......+|.+|...|++++|...+....- . .+ .-...+....++|...+++..|..+..++.....+..++
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALE-L-----QP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 34567899999999999999999987531 1 11 234778889999999999999999998886543322111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 184 ---TLQVHYKVCYARVLDYRRKFIEAAQRYS 211 (408)
Q Consensus 184 ---~lk~~y~~~~a~i~~~~r~f~eAa~~y~ 211 (408)
......+...+..+...+++-+|...+.
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 1113334556777777777777776665
No 143
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=80.78 E-value=18 Score=38.63 Aligned_cols=97 Identities=14% Similarity=0.010 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
+..-..||.+|.+.|++++|.+.+...- +. .+ .-.+.+.....+|...+++..|..+..|+-... .++.+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl-~l-----~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~- 78 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKAL-EV-----FP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFAD- 78 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH-
Confidence 4456788999999999999999887642 21 11 124677788899999999999999998886532 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+...|.++...++|.+|-.+|..+..
T Consensus 79 ---a~~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 79 ---AYSNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234568888888999999999988775
No 144
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=80.77 E-value=32 Score=34.06 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhhccH-HHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcH
Q psy7321 105 VASIRQHLALIYEREENW-RDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~-~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
.+.+...+|..|...|++ ++|.+.+....- . ++ .-.+.+.....+|...+++..|..+..++-.... +
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~-~-----~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~- 169 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVK-L-----EP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK---N- 169 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC---C-
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHh-h-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C-
Confidence 466678899999999999 999999887531 1 11 1357888999999999999999999999875421 2
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhcC
Q psy7321 184 TLQVHYKVCYARVLDYR---------RKFIEAAQRYSELSYK 216 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~---------r~f~eAa~~y~e~~~t 216 (408)
...+...|.++... ++|.+|-..|.++...
T Consensus 170 ---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 170 ---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp ---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 13455677777777 9999999999998764
No 145
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.50 E-value=32 Score=34.31 Aligned_cols=89 Identities=8% Similarity=0.068 Sum_probs=64.2
Q ss_pred HHHHHhcCccccccccCCc-hhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHH
Q psy7321 125 AANVLVGIPLETGQKQYSV-DYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKF 203 (408)
Q Consensus 125 Aa~~L~~i~~Et~~~~~~~-~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f 203 (408)
-...+..+..=| .+..-. .++..+....+++|.+.||+..|-..+.....-.....+...++.|+..++|++...+||
T Consensus 115 ~~~~i~~l~~vt-e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~ 193 (445)
T 4b4t_P 115 RISVIETIRVVT-ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDY 193 (445)
T ss_dssp HHHHHHCCSSSS-SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCH
Confidence 344444443323 333332 357778888999999999999999998776532223346678999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy7321 204 IEAAQRYSELS 214 (408)
Q Consensus 204 ~eAa~~y~e~~ 214 (408)
..|-..+..+.
T Consensus 194 ~~a~~~~~ki~ 204 (445)
T 4b4t_P 194 SQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887776653
No 146
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=80.39 E-value=5.7 Score=29.24 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhc-CChHHHHHHHHHhccc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLED-EDPVQAEAFINRASLL 176 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~-~D~~~A~~~i~Ka~~~ 176 (408)
.....+|.+|...|++++|.+.+..... . .+.....+.+....+++... +++..|..++.++...
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVIN-V----IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-T----SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH-h----CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 3456889999999999999999887532 1 11112457888999999999 9999999999888654
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=79.90 E-value=8.4 Score=30.58 Aligned_cols=67 Identities=9% Similarity=0.140 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCc-cccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcc
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIP-LETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL 175 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~-~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~ 175 (408)
+...+|.+|...|++++|.+.+...- +.. ....+.......+......+...+|+..|..+..|+-.
T Consensus 44 ~~~nlg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGR-ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678999999999999998877632 111 11112234567888999999999999999999988754
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=79.29 E-value=15 Score=27.50 Aligned_cols=63 Identities=16% Similarity=0.040 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
.....+|.++...|++++|.+.+....... + .-...+....+++...+++..|..++.++...
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICID------P-AYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcC------c-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 345678999999999999999988753211 1 12567888999999999999999999888653
No 149
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=79.10 E-value=7.7 Score=27.69 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
+.....+|..+...|++++|.+.+..... . .+ .-.+.+.....++...+++..|..+..++...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~-----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE-L-----DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh-c-----CC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45567789999999999999998877531 1 11 12467778899999999999999998888653
No 150
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=78.68 E-value=6.8 Score=27.99 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 141 YSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 141 ~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+++....+.+....+.+...+++..|..+..++-.... .+.. .+...|.++...++|-+|...|..+...
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAE----AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34445678888999999999999999999988865321 2322 2345688888889999999999887753
No 151
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=78.58 E-value=5.5 Score=30.83 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
........||.+|...|++++|.+.+....- . .+. -.+.+......+...+++..|..++.++-..
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~-----~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVK-Q-----FPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----CCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567788999999999999999999988532 1 111 1577888899999999999999999888653
No 152
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=78.32 E-value=25 Score=30.21 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
..+...+|.+|...|++++|...+....- . ++ .-.+.+.....++...+++..|.....++-... ..+.+.
T Consensus 54 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a 124 (208)
T 3urz_A 54 SKLATELALAYKKNRNYDKAYLFYKELLQ-K-----AP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAA 124 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH
Confidence 44556799999999999999999887421 1 11 125788889999999999999999999987532 233332
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Q psy7321 186 QVHYKVCYARVLDY--RRKFIEAAQRYSELS 214 (408)
Q Consensus 186 k~~y~~~~a~i~~~--~r~f~eAa~~y~e~~ 214 (408)
. ...|.++.. ++++..+...|..+.
T Consensus 125 ~----~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 125 N----IFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred H----HHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 1 233444433 344445555554443
No 153
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=78.08 E-value=10 Score=29.20 Aligned_cols=67 Identities=10% Similarity=-0.034 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCcccccc-ccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQ-KQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~-~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
...||.++...|+|..|...+.... .... .......+.+++......+...|++..|..+.+++-..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al-~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQAL-RQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHH-HhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4679999999999999999988742 2200 01112347788889999999999999999999998653
No 154
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=78.06 E-value=4.3 Score=38.62 Aligned_cols=107 Identities=12% Similarity=-0.024 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCc-cccccc---cCC------chhHHHHHHHHHHHhhhcCChHHHHHHHHHh
Q psy7321 104 QVASIRQHLALIYEREENWRDAANVLVGIP-LETGQK---QYS------VDYKLQTYMKIARLYLEDEDPVQAEAFINRA 173 (408)
Q Consensus 104 e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~-~Et~~~---~~~------~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka 173 (408)
+.+.....++..+...|+|.+|...+.... ...... ... ...+...++....+|+..++|..|..+.+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456667788999999999999999887732 111000 000 0112358889999999999999999999998
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 174 SLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 174 ~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
-... ..+.. .+...|..+...++|-+|-..|..+...
T Consensus 257 l~~~--p~~~~----a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 257 LTEE--EKNPK----ALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHC--TTCHH----HHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHhC--CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6532 12322 2345688888899999999999988753
No 155
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=77.93 E-value=17 Score=33.26 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|..+...|++++|...+..... . +++ -.+.++...++++..|++..|...+.++..... +..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-----~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~~~-- 185 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQ-L-----SNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---DTR-- 185 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----TTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---SHH--
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHH-h-----CCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---chH--
Confidence 4456789999999999999999988532 1 111 246788889999999999999999988864321 221
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARV-LDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i-~~~~r~f~eAa~~y~e~~~t 216 (408)
+....+.+ +...+++.+|...|......
T Consensus 186 --~~~~~~~~~l~~~~~~~~a~~~l~~al~~ 214 (287)
T 3qou_A 186 --YQGLVAQIELLXQAADTPEIQQLQQQVAE 214 (287)
T ss_dssp --HHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhcccCccHHHHHHHHhc
Confidence 22233443 44466677788888777653
No 156
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=77.47 E-value=17 Score=30.07 Aligned_cols=67 Identities=12% Similarity=0.203 Sum_probs=48.4
Q ss_pred HHHHHHhchhhhhhhcchhhhHHHHHHHHHHHHHHh--ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCC
Q psy7321 281 QDFAALLKPHQKAITVDGSSILERAVTEHNLLSASK--LYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQID 358 (408)
Q Consensus 281 ~~F~~~L~~h~~~~~~d~~~~L~~~ViEhNi~~isk--~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~ 358 (408)
..|.+.|++|... ..+..++.+-. .-..++..+||+.+|+++.-+=..+.+|...|-+.=.-|..|
T Consensus 22 ~~~~~~l~~~gLt------------~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~D 89 (147)
T 4b8x_A 22 GEVDAVVKPYGLT------------FARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPND 89 (147)
T ss_dssp HHHHHHHGGGTCC------------HHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC--
T ss_pred HHHHHHHHHcCCC------------HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCc
Confidence 4566777766432 23444444332 234599999999999999999999999999999999888877
Q ss_pred c
Q psy7321 359 S 359 (408)
Q Consensus 359 g 359 (408)
+
T Consensus 90 r 90 (147)
T 4b8x_A 90 G 90 (147)
T ss_dssp -
T ss_pred C
Confidence 7
No 157
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=76.94 E-value=3.9 Score=30.92 Aligned_cols=33 Identities=6% Similarity=0.059 Sum_probs=30.8
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
.+|..+||+.||+|+.-+...|..+-..|.|.-
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 499999999999999999999999999999854
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=75.60 E-value=8.6 Score=29.78 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
..+...+|..|...|++++|...+.... +. ++. -...+.....++...+++..|...+.++-..
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~-----~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAI-EK-----DPN-FVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH-Hh-----CCC-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 3556788999999999999999988752 11 111 2567888999999999999999999888654
No 159
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=75.34 E-value=3.9 Score=40.99 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCch--hHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVD--YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ 177 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~ 177 (408)
.+.....||.+|...|+|++|...++.. ++...+..+.. .-...+.....+|...+++..|..++.||-...
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~a-L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKI-IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 4788889999999999999999998875 33323333332 467778899999999999999999999997543
No 160
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=75.13 E-value=11 Score=38.09 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
......||.+|...|++++|.+.+....- . ++ .-.+.+.....+|...+++..|..++.++-.... .+.+.
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~ 127 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASD-A-----AP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYI 127 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Confidence 34557899999999999999999887532 1 11 1256788899999999999999999998865422 23332
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Q psy7321 186 QVHYKVCYARVLDYR---RKFIEAAQRYSELSY 215 (408)
Q Consensus 186 k~~y~~~~a~i~~~~---r~f~eAa~~y~e~~~ 215 (408)
+...+.++... +++.+|...|.++..
T Consensus 128 ----~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 128 ----TAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp ----HHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 33467777777 899999999988765
No 161
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=75.04 E-value=4 Score=40.78 Aligned_cols=72 Identities=13% Similarity=-0.106 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCch--hHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVD--YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ 177 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~--~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~ 177 (408)
.++....||.+|...|+|++|........ +...+..+.. .....+.....+|...+++..|..++.||-...
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L-~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTM-EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 58888999999999999999999988642 2322223332 367788899999999999999999999997543
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=74.76 E-value=14 Score=31.15 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
..+...+|..|...|++++|...+....- . ++ .-...+.....+|...+++..|..++.++-... ..+.+.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~-~-----~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 158 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLK-I-----DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-----Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHH
Confidence 46678899999999999999998887532 1 11 235678889999999999999999999886532 234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAA 207 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa 207 (408)
.. ..+.++...+++.++-
T Consensus 159 ~~----~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 159 RN----SYELCVNKLKEARKKD 176 (198)
T ss_dssp HH----HHHHHHHHHHHHHC--
T ss_pred HH----HHHHHHHHHHHHHHHH
Confidence 33 3455555556666655
No 163
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=74.67 E-value=13 Score=29.51 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.+...+|.+|...|++++|...+...- +. ++ .-.+.+.....++...+++..|.....++-... .++++.+
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al-~~-----~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a~ 118 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCI-RL-----DS-KFIKGYIRKAACLVAMREWSKAQRAYEDALQVD--PSNEEAR 118 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHH-Hh-----hh-hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHHH
Confidence 345678999999999999999887642 11 11 125678899999999999999999999987542 3455544
Q ss_pred HH
Q psy7321 187 VH 188 (408)
Q Consensus 187 ~~ 188 (408)
..
T Consensus 119 ~~ 120 (126)
T 4gco_A 119 EG 120 (126)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=74.59 E-value=21 Score=35.27 Aligned_cols=99 Identities=8% Similarity=0.030 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKD 182 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~ 182 (408)
..++.+...+|..|.+.|++.+|...+.... +. ++ .-...+....+.|+..+++..|...+.++..... .+
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al-~~-----~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~ 384 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKAL-GL-----DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QN 384 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hc-----CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC
Confidence 3456778899999999999999999988752 11 11 1356788899999999999999999999975432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q psy7321 183 ETLQVHYKVCYARVLDYRRKFIEAAQRYS-ELS 214 (408)
Q Consensus 183 ~~lk~~y~~~~a~i~~~~r~f~eAa~~y~-e~~ 214 (408)
.+. +...+.++...+++.+|.+..+ .++
T Consensus 385 ~~a----~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 385 KAA----RLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CH----HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2345666666777777765433 444
No 165
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=73.92 E-value=15 Score=26.95 Aligned_cols=60 Identities=15% Similarity=-0.012 Sum_probs=46.4
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHH-HHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQ-TYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle-~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
..+|..+...|++++|.+.+....- . .+. -.. .+.....+|...+++..|..+..++-..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~-~-----~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQ-T-----EPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-H-----CSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-H-----CCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4578889999999999999887531 1 111 134 7788899999999999999999888654
No 166
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=73.66 E-value=8.9 Score=31.97 Aligned_cols=103 Identities=16% Similarity=0.042 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhh-hcCChHHHHHHHHHhccccccCCcH
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYL-EDEDPVQAEAFINRASLLQAETKDE 183 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L-~~~D~~~A~~~i~Ka~~~~~~~~~~ 183 (408)
.......+|.+|...|++++|...+..+.-.. . +. . +......+.+ ...+...|...+.++-... .++.
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p-~~--~--~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--P~~~ 108 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEY---Q-DN--S--YKSLIAKLELHQQAAESPELKRLEQELAAN--PDNF 108 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---C-CH--H--HHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--TTCH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---C-Ch--H--HHHHHHHHHHHhhcccchHHHHHHHHHHhC--CCCH
Confidence 35667889999999999999999999864221 1 22 1 1112222222 2223334555666665422 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCh
Q psy7321 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK-PIIDE 221 (408)
Q Consensus 184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t-~~i~~ 221 (408)
+.. ...|.++...++|-+|-..|..+... |...+
T Consensus 109 ~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 109 ELA----CELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HHH----HHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred HHH----HHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 432 34688888899999999999998875 44433
No 167
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=73.59 E-value=31 Score=33.07 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCc---cccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc---c
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIP---LETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA---E 179 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~---~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~---~ 179 (408)
+++-..||.+|...|++++|.+.++.-. .+. .+.-.....+..|-....+|...+++..|..+..|+..... .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~-~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE-HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4555679999999999999998887531 111 11111223456777889999999999999999988864321 1
Q ss_pred CCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC
Q psy7321 180 TKDETLQVHYKVCYA--RVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 180 ~~~~~lk~~y~~~~a--~i~~~~r~f~eAa~~y~e~~~t 216 (408)
..+.+.-.. +...| .+....++|.+|-.+|..+...
T Consensus 130 ~~~~~~~~~-~~~~g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 130 PYRIESPEL-DCEEGWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp SSCCCCHHH-HHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred ccchhhHHH-HHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 111111111 11222 2333356899999999887753
No 168
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=73.43 E-value=19 Score=33.71 Aligned_cols=98 Identities=17% Similarity=0.058 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
......++..|...|++++|.+.+....- . ++ .-.+.+.....++...+++..|.....++-... ..+.+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 307 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE-L-----QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADS 307 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T-----CS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHH
Confidence 45667899999999999999999987532 1 11 123567888999999999999999998886542 223332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+...+.++...++|-+|-..|..+...
T Consensus 308 ----~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 308 ----LNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp ----HHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 335677777889999999999988764
No 169
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=73.06 E-value=30 Score=32.28 Aligned_cols=92 Identities=11% Similarity=0.005 Sum_probs=66.0
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHH
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYK 190 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~ 190 (408)
.+|..+...|++++|.+.+..+.- . .++ -...+.....+++..+++..|..+..++.... ..+. ..+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~-~----~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~----~~~ 70 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWR-Q----EPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLA----EAY 70 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHH-H----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH----HHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHH-h----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCch----HHH
Confidence 368888999999999998876531 1 111 23566778888999999999998887775422 1222 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 191 VCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 191 ~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
...|.++...++|-+|-..|..+..
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5678888888899999999888764
No 170
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=72.96 E-value=14 Score=28.16 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=39.1
Q ss_pred cccCChHHH----HHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 318 YNNISFPEL----GALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 318 Ys~Itl~~L----a~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
...++..+| |+.+|++..-+-..+.+|...|-+.-.-|.....+...
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT 70 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLT 70 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEEC
Confidence 467899999 89999999999999999999999988888744444443
No 171
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=72.73 E-value=41 Score=30.55 Aligned_cols=98 Identities=18% Similarity=0.057 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
......||.++...|++++|...+..+.... +..- ...+.....+...++...|...+.++-... .++.+.
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------p~~~-~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~ 221 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQD------QDTR-YQGLVAQIELLXQAADTPEIQQLQQQVAEN--PEDAAL 221 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------CSHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------cchH-HHHHHHHHHHHhhcccCccHHHHHHHHhcC--CccHHH
Confidence 4567889999999999999999999875321 1111 222233333445566776766676665432 234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.. ..|..+...++|-+|-..|..+...
T Consensus 222 ~~----~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 222 AT----QLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HH----HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 33 4588888999999999999998864
No 172
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=72.43 E-value=11 Score=27.93 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=32.0
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
..++..+||+.+|+|...+-+.+..|...|.|..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5699999999999999999999999999999974
No 173
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=72.32 E-value=18 Score=28.79 Aligned_cols=64 Identities=16% Similarity=-0.020 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ 177 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~ 177 (408)
.....||.+|...|++++|...+....- . ++. -.+.+.....++...+++..|...+.++....
T Consensus 53 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-----~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 53 RYFLGLGACRQSLGLYEQALQSYSYGAL-M-----DIN-EPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh-c-----CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3446789999999999999999887532 1 111 23567788999999999999999998886543
No 174
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=72.18 E-value=31 Score=27.66 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=37.7
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..+|..+||+.+|+|..-+=..+.+|...|-+.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 67999999999999999999999999999999988777665
No 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=72.13 E-value=38 Score=32.27 Aligned_cols=137 Identities=10% Similarity=0.010 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCc-----hhHHHHHHHHHHHhhhcC--ChHHHHHHHHHhcccc
Q psy7321 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSV-----DYKLQTYMKIARLYLEDE--DPVQAEAFINRASLLQ 177 (408)
Q Consensus 105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~-----~~Kle~~L~i~RL~L~~~--D~~~A~~~i~Ka~~~~ 177 (408)
...+...++.++...|+.+.|.+.+..++- .++ +.-+-+.|-.+.+.+..+ ++..|-.+........
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTN------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 345566788999999999999999988631 233 355667777776666555 9999988888875432
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC-----hHHHHHHHHHHHHHHHhCCCCcchhHHHHhh
Q psy7321 178 AETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK-PIID-----EAERITALKSALICTILASAGQQRSRMLATL 251 (408)
Q Consensus 178 ~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t-~~i~-----~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l 251 (408)
++|.--.-.+. .+...++|-+|-..+..+... |.+. ...--.+|.++|.|...... +-.+++.++
T Consensus 209 ---p~~~~~~lLln----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 209 ---PTWKTQLGLLN----LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp ---CSHHHHHHHHH----HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred ---CCcccHHHHHH----HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 23322112122 567788999988888754431 1110 01124577677777766543 446777777
Q ss_pred hc-Ccc
Q psy7321 252 FK-DER 256 (408)
Q Consensus 252 ~~-d~~ 256 (408)
.+ +|.
T Consensus 280 ~~~~P~ 285 (310)
T 3mv2_B 280 VKLDHE 285 (310)
T ss_dssp HHTTCC
T ss_pred HHhCCC
Confidence 76 443
No 176
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=72.02 E-value=12 Score=39.91 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....||.+|.+.|++++|...+...- +. .+ .-.+.+.....++...+++..|.....|+-... .++.+.
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al-~l-----~P-~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a- 113 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAI-RI-----SP-TFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PAFADA- 113 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH-
Confidence 344567888888888888887776531 11 11 124667777778888888888888777775432 123222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+...|.++...++|-+|-.+|..+..
T Consensus 114 ---~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 114 ---HSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33457777777778888887777664
No 177
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=71.87 E-value=24 Score=28.39 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=36.9
Q ss_pred HHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 308 EHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 308 EhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
+..++.+-.... ++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++-
T Consensus 40 ~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 40 QEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp HHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 334444444456 9999999999999999999999999999998888665553
No 178
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.69 E-value=29 Score=34.23 Aligned_cols=106 Identities=11% Similarity=0.057 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccCCc---------------------hhHH------------------H
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQYSV---------------------DYKL------------------Q 148 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~---------------------~~Kl------------------e 148 (408)
.-..|+++|.+.|+.++-++.+..++.- ...++. +..+ .
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPF--LSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTG--GGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999988888887765422 111211 1111 1
Q ss_pred --HHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 149 --TYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 149 --~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+-.+.+++|++.+||..|-..+++.........|....+.-+.+.++++...+|+..+-..|..+..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 1226788899999999999998888764444445677888889999999998888888777766543
No 179
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=71.56 E-value=7.9 Score=29.54 Aligned_cols=63 Identities=14% Similarity=0.013 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
.+...+|.+|...|++++|.+.+....- . .+ .-...+.....++...+++..|..+..++...
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~-~-----~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQ-L-----EP-TFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-h-----CC-CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4557789999999999999999887532 1 11 13467888899999999999999999888653
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=71.14 E-value=28 Score=28.15 Aligned_cols=67 Identities=7% Similarity=0.005 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 103 ~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
.....+...+|..|...|+|.+|...+...- +. ++ .-...+......|...+++..|...+.++-..
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al-~~-----~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVL-KR-----EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH-----ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hc-----CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3456677889999999999999999887642 11 11 13567888999999999999999999998754
No 181
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=70.82 E-value=21 Score=27.68 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=33.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEec
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akID 355 (408)
..++..+||+.+|+|+.-+-..+..|...|-+...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 3589999999999999999999999999999987655
No 182
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=70.78 E-value=13 Score=30.15 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=36.5
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
..++.++||+.+|+|+..+.+.+..+...|-+...=....|+.--.++
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCH
Confidence 568999999999999999999999999999987643333455544433
No 183
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.64 E-value=32 Score=27.58 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=38.5
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
...++..+||+.+|+++..+-..+.+|...|-+.-.-|..++-
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4579999999999999999999999999999999887766663
No 184
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=70.49 E-value=9.9 Score=27.50 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=31.5
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
..++..+||+.||+|...+.+.+..|..+|.|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4599999999999999999999999999999755
No 185
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=70.42 E-value=25 Score=27.07 Aligned_cols=63 Identities=19% Similarity=0.017 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
.+...+|.+|...|++++|...+....- . ++ .-...+.....++...+++..|..++.++-..
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~-~-----~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALE-L-----DG-QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-----Cc-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4567789999999999999999887531 1 11 13567888999999999999999998888643
No 186
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=70.17 E-value=15 Score=26.95 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 146 KLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 146 Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+.+.+....+.++..+++..|..+..++-.... .+.. .+...|.++...++|.+|...|..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~----~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHV----LYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHH----HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 567888999999999999999999988865322 2332 3445688888889999999999887753
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=69.76 E-value=44 Score=28.55 Aligned_cols=112 Identities=13% Similarity=-0.042 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccC------C-chhHHHHHHHHHHHhhhcCChHHHHHHHHHhc
Q psy7321 102 EEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQY------S-VDYKLQTYMKIARLYLEDEDPVQAEAFINRAS 174 (408)
Q Consensus 102 E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~------~-~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~ 174 (408)
|++-+..-..++..+.+.|++++|...+...- +- .... + .......|......+...++|..|-...+|+-
T Consensus 7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL-~l-~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAM-EI-SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH-HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hh-CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455566778888999999999998877532 11 0110 0 11234589999999999999999999998887
Q ss_pred cccc---cCCcHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 175 LLQA---ETKDETLQVH--YKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 175 ~~~~---~~~~~~lk~~--y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
..+. +..+..-+.. =+...|..+..-++|-+|-.+|..+..
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6411 0011111222 012457777778999999999998775
No 188
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=69.55 E-value=11 Score=31.23 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=36.1
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE---EeccC
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNG---YVDQI 357 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a---kIDqv 357 (408)
-..++++.+||+.+|+|+..+-+.+.+|...|.|.. .+|+.
T Consensus 16 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 16 KDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 357899999999999999999999999999999864 56654
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=68.97 E-value=21 Score=34.36 Aligned_cols=96 Identities=11% Similarity=0.086 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccC
Q psy7321 101 FEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAET 180 (408)
Q Consensus 101 ~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~ 180 (408)
.....+.+...+|..|...|++++|...+....- . ++ ...+.+......|...+++..|..++.++.....
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-- 338 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-I-----DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-- 338 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-h-----Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--
Confidence 3445677888999999999999999999887531 1 11 2457788899999999999999999999876432
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 181 KDETLQVHYKVCYARVLDYRRKFIEAAQR 209 (408)
Q Consensus 181 ~~~~lk~~y~~~~a~i~~~~r~f~eAa~~ 209 (408)
.+.+.. ...+.++...+++.++.+.
T Consensus 339 ~~~~~~----~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 339 EDKAIQ----AELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344433 2345555556666665543
No 190
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=68.84 E-value=40 Score=26.71 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=38.1
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|+++..+-..+.+|...|-+.-..|..++
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 87 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDK 87 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccC
Confidence 457899999999999999999999999999999988777666
No 191
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=68.75 E-value=18 Score=32.08 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhh----cCChHHHHHHHHHhccccccCC
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLE----DEDPVQAEAFINRASLLQAETK 181 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~i~Ka~~~~~~~~ 181 (408)
+.....+|.+|...|++++|...+....- . + -.+.+.....+|.. .+|+..|..+..++... +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~-----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~ 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD-L-----K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T-----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH-C-----C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C
Confidence 34456789999999999999999887421 1 1 12567778888999 99999999999888653 2
Q ss_pred cHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Q psy7321 182 DETLQVHYKVCYARVLDY----RRKFIEAAQRYSELSYK 216 (408)
Q Consensus 182 ~~~lk~~y~~~~a~i~~~----~r~f~eAa~~y~e~~~t 216 (408)
+++. +...+.++.. .++|.+|-..|..+...
T Consensus 73 ~~~a----~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 73 YSNG----CHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp CHHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHH----HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 3222 2346777777 88899999988887653
No 192
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.19 E-value=11 Score=32.92 Aligned_cols=69 Identities=12% Similarity=-0.004 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhccccc---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 147 LQTYMKIARLYLEDEDPVQAEAFINRASLLQA---ETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 147 le~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~---~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+-.++++++-.++.+.|..|+...+.+..... +...+..+..-..+.|-.+..+++|..|...|..+..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34567899999999999999999888643332 2234788888888999999999999999999998753
No 193
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=68.18 E-value=38 Score=27.03 Aligned_cols=44 Identities=9% Similarity=0.127 Sum_probs=38.9
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
.....++..+||+.+|+++..+-..+.+|...|-+.-.-|..++
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~ 91 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDR 91 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTB
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCccc
Confidence 45678999999999999999999999999999999887765554
No 194
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=68.07 E-value=4 Score=41.02 Aligned_cols=96 Identities=14% Similarity=0.002 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
+.....+|..|.+.|++++|.+.+....- . ++ .-...+.....+|...+++..|..+..++-.... .+.+.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l-----~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~ 110 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIE-L-----DK-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDA 110 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-S-----CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCTTH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Confidence 55667777888888888888777766421 1 11 1245666777778888888888777777754321 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSE 212 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e 212 (408)
. +..-.+..+...++|.+|-..|.+
T Consensus 111 ~--~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 111 K--MKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp H--HHHHHHHHHHHHHHHCCC------
T ss_pred H--HHHHHHHHHHHHHHHHHHhccccc
Confidence 1 111122225556777777777664
No 195
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=67.97 E-value=12 Score=31.74 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=35.6
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE---EEeccC
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMN---GYVDQI 357 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~---akIDqv 357 (408)
-..++++.+||+.+|+|+..+-+.+.+|...|.|. +.+|..
T Consensus 21 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 21 ENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 35679999999999999999999999999999885 456644
No 196
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.92 E-value=19 Score=28.00 Aligned_cols=70 Identities=16% Similarity=-0.074 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 144 DYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 144 ~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
....+.+....+.++..+++..|..+..++-... .+.......+...+..+...++|.+|...|..+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 3467889999999999999999999999886532 222333455666788888889999999999887653
No 197
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.82 E-value=31 Score=27.43 Aligned_cols=43 Identities=9% Similarity=0.068 Sum_probs=38.3
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
...++..+||+.+|++...+-..+.+|...|-+.-.-|..++-
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 4569999999999999999999999999999998887766653
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=67.35 E-value=13 Score=27.89 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 147 LQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 147 le~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
.+.+.....+|+..+++..|..++.++-.... .++. .+...|.++...++|-+|...|..+..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP--DYVG----TYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778889999999999999999999875432 2222 344678888889999999999988764
No 199
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=67.16 E-value=16 Score=35.18 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=56.1
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhh-hcCChHHHHHHHHHhccccccCCcHHH---
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYL-EDEDPVQAEAFINRASLLQAETKDETL--- 185 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L-~~~D~~~A~~~i~Ka~~~~~~~~~~~l--- 185 (408)
..+|.+|...|++++|.+.++..- + ...++..+-.++.....++. ..+++..|..+..++-....+..++.-
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~ 413 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEF-S---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-H---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred hhHHHHHHHhccHHHHHHHHHHHH-h---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 468999999999999999887642 1 12344455555665555543 568999998888777533211111000
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 ---------------QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 ---------------k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
....+...|.++...++|.+|-.+|..+.+.
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 0112345677777788888888888877654
No 200
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=67.12 E-value=37 Score=25.64 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=34.9
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCC
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQID 358 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~ 358 (408)
-..++..+||+.+|+|..-+-..+..|...|-+...-+..+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 46799999999999999999999999999999987655433
No 201
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=66.84 E-value=39 Score=26.11 Aligned_cols=42 Identities=5% Similarity=-0.153 Sum_probs=35.5
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecC
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~ 365 (408)
++..+||..+|+++..+..++..+...|-|.-. .+|+...+.
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~---~~~~~LT~k 62 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE---GKQYMLTKK 62 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE---CCeeEEChh
Confidence 999999999999999999999999999999776 335444433
No 202
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=66.77 E-value=31 Score=27.84 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=37.7
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
-...++..+||+.+|+++..+-..+.+|...|-+.-.-|..++
T Consensus 42 ~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 84 (145)
T 3g3z_A 42 TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDR 84 (145)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCG
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 3456999999999999999999999999999999877665555
No 203
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=66.56 E-value=12 Score=31.31 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=36.4
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE---EeccC
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNG---YVDQI 357 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a---kIDqv 357 (408)
--.++++.+||+.+|+|+..+-..+.+|...|.|.+ .+|+.
T Consensus 19 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 19 GNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 347899999999999999999999999999998864 67765
No 204
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=66.55 E-value=38 Score=26.96 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=36.4
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
.++..+||+.+|+++..+-..+.+|...|-+.-.-|..++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 6999999999999999999999999999999877766555
No 205
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=66.11 E-value=12 Score=31.22 Aligned_cols=51 Identities=6% Similarity=-0.048 Sum_probs=40.1
Q ss_pred HHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 314 ASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 314 isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
+++.+.. +.++||+.+|+|+..+++++.++...|-+...=. ..|+.--.++
T Consensus 18 La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar~p 68 (145)
T 1xd7_A 18 ISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLKKDP 68 (145)
T ss_dssp HHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEESSCG
T ss_pred HHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceecCCH
Confidence 3444556 9999999999999999999999999999987655 4555444444
No 206
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=66.07 E-value=54 Score=26.89 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=47.7
Q ss_pred HHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcc
Q psy7321 110 QHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL 175 (408)
Q Consensus 110 ~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~ 175 (408)
..+|..+...|++++|...+....-. ++ .-.+.+....++++..|++..|...+.++..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~------~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE------LQ-SRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH------HH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 56788999999999999999885321 11 2357788889999999999999999988864
No 207
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=65.91 E-value=18 Score=29.23 Aligned_cols=42 Identities=10% Similarity=0.008 Sum_probs=38.1
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 788999999999999999999999999999999887765554
No 208
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=65.86 E-value=15 Score=29.46 Aligned_cols=42 Identities=14% Similarity=0.018 Sum_probs=37.4
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|+++..+-..+.+|...|-+.-.-|..++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 457999999999999999999999999999999887775544
No 209
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=65.68 E-value=15 Score=36.82 Aligned_cols=95 Identities=18% Similarity=-0.019 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVH 188 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~ 188 (408)
...+|..+...|++++|.+.+...-- . .+ .-...+......|+..+++..|..+..++-.... .+..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~-~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~---- 75 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIE-L-----NP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIK---- 75 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHH----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH-h-----CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHH----
Confidence 34567778889999999999887421 1 11 1267888899999999999999999999876422 2322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 189 YKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 189 y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+...|..+...++|.+|-..|..+...
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345688888899999999999987764
No 210
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=65.58 E-value=17 Score=26.88 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=49.2
Q ss_pred CchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 142 SVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 142 ~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
++....+.+....+.+...+++..|..+..++..... .+.. .+...+.++...++|-+|...|..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAE----AWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHH----HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344567888899999999999999999988865321 2322 234567777778899999888887764
No 211
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=65.50 E-value=45 Score=26.76 Aligned_cols=36 Identities=8% Similarity=0.126 Sum_probs=32.8
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEecc
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQ 356 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDq 356 (408)
+|..+||+.+|+|..-+-+.+.+|...|-+.-.-+.
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~ 78 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQN 78 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCc
Confidence 899999999999999999999999999999765443
No 212
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=65.38 E-value=47 Score=26.00 Aligned_cols=41 Identities=15% Similarity=-0.063 Sum_probs=37.7
Q ss_pred ccCChHHHHHHh-CCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 319 NNISFPELGALL-QISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 319 s~Itl~~La~lL-gls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..+++.+|++.+ |++..-+-..+.+|...|-|....|..++
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~ 75 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELP 75 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSS
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 568999999999 99999999999999999999988887655
No 213
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=65.17 E-value=17 Score=28.93 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=39.0
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
...++..+||+.+|+++..+-..+.+|...|-+.-.-|..++-
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 5789999999999999999999999999999999887776664
No 214
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=64.90 E-value=46 Score=25.83 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=38.5
Q ss_pred cccCChHHHHHHh-CCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALL-QISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lL-gls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...+++.+|++.+ |+|+.-+=..+.+|...|-|..+.|..++
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4679999999999 99999999999999999999998887665
No 215
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=64.80 E-value=15 Score=30.45 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=35.8
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE---EEeccC
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMN---GYVDQI 357 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~---akIDqv 357 (408)
-..++++.+||+.+|+|+..+-+.+.+|...|.|. +.+|+.
T Consensus 18 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 18 ADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 34689999999999999999999999999999884 456754
No 216
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=64.23 E-value=22 Score=28.61 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=35.3
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|+++..+-..+.+|...|-|.-.-|..++
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~ 90 (143)
T 3oop_A 49 NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDR 90 (143)
T ss_dssp HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----C
T ss_pred cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccC
Confidence 378999999999999999999999999999999887765554
No 217
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=64.18 E-value=14 Score=30.73 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=35.6
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE---EeccC
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNG---YVDQI 357 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a---kIDqv 357 (408)
--.+++..+||+.+|+|+..+-+.+.+|...|.|.. .+|..
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 347899999999999999999999999999998853 46654
No 218
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=64.02 E-value=16 Score=31.37 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=39.6
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
.++.++||+.+|+|+..+++++.++...|-+..+=-...|+.--.++
T Consensus 44 ~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 44 PISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 59999999999999999999999999999998875555566544444
No 219
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=63.80 E-value=31 Score=27.78 Aligned_cols=44 Identities=9% Similarity=0.047 Sum_probs=30.6
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
....++..+||+.+|+++..+=..+.+|...|-|.-.-|..++-
T Consensus 48 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR 91 (142)
T 3ech_A 48 EQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQR 91 (142)
T ss_dssp HTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--------
T ss_pred hCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCC
Confidence 34579999999999999999999999999999998877776663
No 220
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=62.82 E-value=44 Score=27.23 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=38.5
Q ss_pred HHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 308 EHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 308 EhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
+..++.+-.....++..+||+.+|++...+-..+.+|...|-+.-.-|..++
T Consensus 45 ~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 45 EWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDK 96 (155)
T ss_dssp HHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-----
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcC
Confidence 3334333344568999999999999999999999999999999876655444
No 221
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=62.40 E-value=36 Score=28.43 Aligned_cols=42 Identities=10% Similarity=0.237 Sum_probs=38.0
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++...+=..+.+|...|-|.-.-|..++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 457999999999999999999999999999999888776655
No 222
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=62.31 E-value=31 Score=28.02 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=37.5
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++...+-..+.+|...|-+.-.-|..++
T Consensus 49 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 467999999999999999999999999999999887766554
No 223
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=62.27 E-value=17 Score=31.29 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=35.9
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE---EEeccC
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMN---GYVDQI 357 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~---akIDqv 357 (408)
--.++++.+||+.+|+|+..+-..+.+|...|.|. +.+|+.
T Consensus 28 ~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 28 KDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 34689999999999999999999999999999885 456654
No 224
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=61.73 E-value=32 Score=30.38 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=69.4
Q ss_pred HHHHHHHHHHh----hccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhh----cCChHHHHHHHHHhcccccc
Q psy7321 108 IRQHLALIYER----EENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLE----DEDPVQAEAFINRASLLQAE 179 (408)
Q Consensus 108 l~~~LA~~~e~----~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~i~Ka~~~~~~ 179 (408)
....|+.+|.. .|++++|.+.+...- +. + -.+.+....++|.. .+|+.+|..+..++...
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~-----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 107 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DL-----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--- 107 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT-----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HC-----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---
Confidence 45678999999 999999999988742 11 1 35677788899999 99999999999888653
Q ss_pred CCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Q psy7321 180 TKDETLQVHYKVCYARVLDY----RRKFIEAAQRYSELSYK 216 (408)
Q Consensus 180 ~~~~~lk~~y~~~~a~i~~~----~r~f~eAa~~y~e~~~t 216 (408)
++++. +...+.++.. .++|.+|-.+|..+...
T Consensus 108 -~~~~a----~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 108 -KYAEG----CASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp -TCHHH----HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred -CCccH----HHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 23332 2345777777 78899999999887753
No 225
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=61.68 E-value=58 Score=25.70 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=37.9
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++...+-..+.+|...|-+.-.-|..++
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 91 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDG 91 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCC
Confidence 357999999999999999999999999999999888776665
No 226
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=61.42 E-value=44 Score=26.91 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=36.5
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++...+-..+.+|...|-+.-.-|..++
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~ 95 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDR 95 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCc
Confidence 457999999999999999999999999999999887766555
No 227
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=61.16 E-value=42 Score=26.72 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=36.1
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..++..+||+.+|+++..+-..+.+|...|-|.-.-|..++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 38999999999999999999999999999999887776655
No 228
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=60.92 E-value=56 Score=26.65 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=37.9
Q ss_pred cccCChHHHHHHh-CCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALL-QISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lL-gls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...+++.+|++.+ |+++.-+=..+.+|...|-|.-+.|..++
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCC
Confidence 4568999999999 79999999999999999999988887665
No 229
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=60.68 E-value=17 Score=30.24 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=42.6
Q ss_pred HHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 308 EHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 308 EhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
+..++.+-.....++..+||+.+|+++..+=..+.+|...|-|.-.-|..++
T Consensus 48 q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 48 QFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 3333333334568999999999999999999999999999999988877666
No 230
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=60.12 E-value=51 Score=24.56 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=34.6
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccC
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQI 357 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv 357 (408)
..++..+||+.+|+|..-+-..+..|...|-+...-|..
T Consensus 37 ~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 37 PGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp CSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 468999999999999999999999999999998765543
No 231
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=60.04 E-value=55 Score=26.20 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=34.9
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++...+-..+.+|...|-+.-.-|..++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~ 89 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDG 89 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCC
Confidence 568999999999999999999999999999999877665544
No 232
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=59.87 E-value=17 Score=29.57 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=40.7
Q ss_pred HHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 309 HNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 309 hNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..++.+-.....++..+||+.+|++...+-..+.+|...|-+.-.-|..++
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 333333334568999999999999999999999999999999887765444
No 233
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=59.87 E-value=51 Score=26.84 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=36.7
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..++..+||+.+|++...+-..+.+|+..|-+.-.-|..++
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 47999999999999999999999999999999887765554
No 234
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=59.53 E-value=17 Score=29.30 Aligned_cols=41 Identities=10% Similarity=0.078 Sum_probs=36.6
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..++..+||+.+|+++..+=..+.+|...|-+.-.-|..++
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 92 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDE 92 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 56999999999999999999999999999999876666555
No 235
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=59.44 E-value=45 Score=26.94 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 145 YKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 145 ~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
...+.+......++..+++..|.....++-... ..++. ++...|..+...++|-+|-.+|..+...
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSR----FFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 357788889999999999999999998886532 23333 2345688888899999999999988753
No 236
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=59.32 E-value=20 Score=28.89 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=37.5
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|+|+..+-..+.+|...|-+.-.-|..++
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 357899999999999999999999999999999888766554
No 237
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=59.11 E-value=27 Score=28.77 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=36.3
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|+++..+=..+.+|...|-|.-.-|..++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 103 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDR 103 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 467999999999999999999999999999999888866665
No 238
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=58.78 E-value=20 Score=27.51 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHhccccccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 148 QTYMKIARLYLEDEDPVQAEAFINRASLLQAETK-DETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 148 e~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~-~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+-|+.+.+.++..+||.+|...+.+|-....+.. ...-+...+...+..+...++|..|-..|.++..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 5678899999999999999999988865432211 0111233445677778888899999998888774
No 239
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=58.18 E-value=23 Score=29.57 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=38.2
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
.++.++||+.+|+|+..+++++.++...|-+..+=-...|+.--.++
T Consensus 28 ~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (143)
T 3t8r_A 28 CISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPA 74 (143)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCG
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCc
Confidence 59999999999999999999999999999988754444455544444
No 240
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=57.94 E-value=17 Score=29.56 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=37.1
Q ss_pred HHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 308 EHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 308 EhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
+..++.+-.....++..+||+.+|+++..+=..+.+|...|-+.-.-|..++
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 42 EWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 3333333334568999999999999999999999999999999877665554
No 241
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=57.68 E-value=18 Score=30.29 Aligned_cols=47 Identities=9% Similarity=-0.074 Sum_probs=36.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
..++.++||+.+|+|+..+++.+..+...|-+...=- ..|+.--.++
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~~p 75 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLKDL 75 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCCCh
Confidence 4589999999999999999999999999999876544 4455544444
No 242
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=57.55 E-value=32 Score=25.15 Aligned_cols=64 Identities=9% Similarity=-0.086 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 147 LQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 147 le~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
.+.+......++..+++..|.....++-.... .++. .+...|..+...++|.+|-..|..+...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPV----GYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56778889999999999999999988865322 2332 2445788888899999999999998864
No 243
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=57.31 E-value=17 Score=29.72 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=38.2
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE--EeccCCc---EEEec
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNG--YVDQIDS---IVHFE 364 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a--kIDqv~g---iV~F~ 364 (408)
...++..+||+.+|+++..+-..+.+|+..|-+.- .-|..++ .+...
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT 104 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLS 104 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEEC
Confidence 46799999999999999999999999999999988 6665555 45443
No 244
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=57.12 E-value=66 Score=33.53 Aligned_cols=140 Identities=10% Similarity=-0.041 Sum_probs=85.2
Q ss_pred HhhccHHHHHHHHhcCcc---ccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHH
Q psy7321 117 EREENWRDAANVLVGIPL---ETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCY 193 (408)
Q Consensus 117 e~~gd~~eAa~~L~~i~~---Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~ 193 (408)
...|++++|.+.+....- +. .+... ..-.+.++...+.++..+++..|...+.++-... ..+++. +...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~-~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a----~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDA-DGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRL----VWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC--------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHH----HHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccc-ccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHH----HHHH
Confidence 678999999999887530 00 00111 1235788889999999999999999999887532 234433 3457
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCChhHHHHHHHHH
Q psy7321 194 ARVLDYRRKFIEAAQRYSELSYK-PIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYL 271 (408)
Q Consensus 194 a~i~~~~r~f~eAa~~y~e~~~t-~~i~~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp~~~~L~k~f~ 271 (408)
|.++...++|-+|-..|..+... |.. . +. ....+.++.-+..... ...+-..+-.+|.. ...+..+..++.
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P~~-~-~~--~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--~~a~~~lg~~~~ 545 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFPGE-L-AP--KLALAATAELAGNTDE-HKFYQTVWSTNDGV--ISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTC-S-HH--HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-h-HH--HHHHHHHHHHcCChHH-HHHHHHHHHhCCch--HHHHHHHHHHHH
Confidence 88888999999999999998753 221 1 11 1222334444444444 33333333345542 234555555553
No 245
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=56.57 E-value=38 Score=25.47 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 147 LQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 147 le~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
...+.....+|+..+++..|..++.++-.... .+.. .+...|.++...++|-+|...|..+..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSV----AWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36788889999999999999999988865322 2322 334578888889999999999988764
No 246
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=56.34 E-value=21 Score=28.29 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=33.3
Q ss_pred CChHHHHHHh-CCCHHHHHHHHHHHHhcCceEEEec
Q psy7321 321 ISFPELGALL-QISAAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 321 Itl~~La~lL-gls~e~~E~~ls~mI~~grl~akID 355 (408)
+++.+|++.+ |+|+.-+=+.+.+|...|-+.-+.+
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 5599999999 9999999999999999999998888
No 247
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=56.04 E-value=65 Score=26.52 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
......||..|...|++++|...+..... . ++. -.+.+......|...+++..|.....++-..
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~-l-----~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFA-L-----GKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----SSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHh-h-----CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34457799999999999999999887521 1 111 1357888899999999999999999998764
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=55.95 E-value=21 Score=31.02 Aligned_cols=44 Identities=30% Similarity=0.418 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHh
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLY 157 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~ 157 (408)
..++.++|..|.+.|++.+|..+|++||... ++ ..+-+...|||
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt------~kvnm~LakLy 165 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RT------PKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CC------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cC------HHHHHHHHHHh
Confidence 5678899999999999999999999998654 32 24445556665
No 249
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=54.96 E-value=16 Score=30.92 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=36.9
Q ss_pred HhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE---EEeccC
Q psy7321 315 SKLYNNISFPELGALLQISAAKAEKIASHMICEGRMN---GYVDQI 357 (408)
Q Consensus 315 sk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~---akIDqv 357 (408)
-+--.++++.+||+.+|+|+..+-.-+.+|..+|.|. |.+|..
T Consensus 12 L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 12 LQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 3445689999999999999999999999999999875 567754
No 250
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=54.90 E-value=16 Score=31.54 Aligned_cols=41 Identities=7% Similarity=0.169 Sum_probs=35.7
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE---EEecc
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMICEGRMN---GYVDQ 356 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~---akIDq 356 (408)
+-..++++.+||+.+|+|+..+-+.+.+|...|.|. +.+|.
T Consensus 37 ~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~ 80 (171)
T 2e1c_A 37 QNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 80 (171)
T ss_dssp HHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECH
Confidence 335789999999999999999999999999999885 45665
No 251
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=54.57 E-value=15 Score=29.27 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=37.5
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|+++..+-..+.+|...|-+.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 567999999999999999999999999999999877666555
No 252
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=54.39 E-value=33 Score=26.83 Aligned_cols=37 Identities=5% Similarity=0.064 Sum_probs=33.9
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEec
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akID 355 (408)
..+++.+||+.+|+|+..+-..+..|...|.+..+-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999999999999999999987654
No 253
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=53.63 E-value=18 Score=30.10 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=34.6
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE---EEecc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMN---GYVDQ 356 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~---akIDq 356 (408)
..++++.+||+.+|+|+..+-+.+.+|...|.|. +.+|.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 4689999999999999999999999999999885 45664
No 254
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=53.63 E-value=32 Score=29.65 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcC----ChHHHHHHHHHhccccccCC
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDE----DPVQAEAFINRASLLQAETK 181 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~----D~~~A~~~i~Ka~~~~~~~~ 181 (408)
......|+.+|...||+++|.+.+...- +. + -.+.+.....+|.. + |+.+|..+..++... +
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~--g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g 83 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAA-AQ--G------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----G 83 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH-Hc--C------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----C
Confidence 4456789999999999999999988742 11 1 13556677888887 7 999999999998542 3
Q ss_pred cHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Q psy7321 182 DETLQVHYKVCYARVLDY----RRKFIEAAQRYSELSYK 216 (408)
Q Consensus 182 ~~~lk~~y~~~~a~i~~~----~r~f~eAa~~y~e~~~t 216 (408)
++.-. ...+.++.. .+++.+|...|..+...
T Consensus 84 ~~~a~----~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 84 SKSGE----IVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp CHHHH----HHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred CHHHH----HHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 43322 234666655 67899999999988754
No 255
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=53.40 E-value=24 Score=30.87 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=40.1
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSW 372 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W 372 (408)
--.+|-++||..+|++++.+-+.+.+|..+|-|.- ..|.|...+++.|..+
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~~~L~~~ 228 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSERMLAL----DGKRIKIIDCDRLQKT 228 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHHHHHHH
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee----CCCEEEEeCHHHHHHH
Confidence 35689999999999999999999999999998853 2455666555555544
No 256
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=53.23 E-value=22 Score=29.00 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=35.2
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
....++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 58 ~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 58 ETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred hCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 3567999999999999999999999999999999877765554
No 257
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=53.17 E-value=22 Score=29.35 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=33.3
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++...+-..+.+|+..|-|.-.-|..++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 568999999999999999999999999999999876655444
No 258
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=52.78 E-value=19 Score=29.09 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=39.1
Q ss_pred HHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 308 EHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 308 EhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
+..++.+-.-...++..+||+.+|+++..+=..+.+|...|-+.-.-|..++
T Consensus 38 q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~ 89 (140)
T 3hsr_A 38 GYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDE 89 (140)
T ss_dssp HHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCc
Confidence 3333333334578999999999999999999999999999999888776665
No 259
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=51.80 E-value=28 Score=28.72 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=36.0
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 467999999999999999999999999999999877655444
No 260
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=51.63 E-value=33 Score=25.98 Aligned_cols=44 Identities=9% Similarity=-0.111 Sum_probs=36.3
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
..+++.+||+.+|+|..-+-+.+..|...|.+...- |.......
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~----g~y~l~~~ 85 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG----ERWVVTDA 85 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC----CEEEECCC
Confidence 458999999999999999999999999999997643 55444443
No 261
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=51.45 E-value=65 Score=26.59 Aligned_cols=43 Identities=16% Similarity=-0.028 Sum_probs=36.4
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE--EeccCCcE
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNG--YVDQIDSI 360 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a--kIDqv~gi 360 (408)
..-.|.+.||+.+|+|+.++.+.+.+++..|-|.= +.|..++.
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~ 93 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIK 93 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCce
Confidence 46689999999999999999999999999998864 55665443
No 262
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=51.33 E-value=91 Score=24.84 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhcCceEEEecc----CCcEEEecCC---CchhhHHHHHHHHHHHHHHHHHHHH-hhChhh
Q psy7321 331 QISAAKAEKIASHMICEGRMNGYVDQ----IDSIVHFETR---EILPSWDKQIESLCYRIDHIMEQIE-TVQPEW 397 (408)
Q Consensus 331 gls~e~~E~~ls~mI~~grl~akIDq----v~giV~F~~~---~~l~~W~~~I~~l~~~v~~v~~~i~-~~~p~~ 397 (408)
++++..+-..+.+|-.+|-|...-+. +...++.-++ +.+..|-.....+...++.+...-. .++|+|
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~il~~~~~~~~~~~ 115 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKWDFVSSKINVLKSSNSRWSHPQF 115 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcccccCcCCcc
Confidence 78999999999999999999988642 2222322222 5788888888777777777665444 335655
No 263
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=51.20 E-value=26 Score=30.14 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=39.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhH
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSW 372 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W 372 (408)
-.+|-++||..+|++++.+-+.+.+|-.+|-|.- ..|-|...+++.|..+
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~~~ 217 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVKL----SRGKITILDSKRLETL 217 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCHHHHHHH
Confidence 3788999999999999999999999999998853 3566666555555544
No 264
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=51.15 E-value=17 Score=29.79 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=38.9
Q ss_pred HHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc---EEEec
Q psy7321 309 HNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS---IVHFE 364 (408)
Q Consensus 309 hNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g---iV~F~ 364 (408)
..++.+-.-...++..+||+.+|+++..+=..+.+|+..|-|.-.-|..++ .|...
T Consensus 44 ~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 102 (149)
T 4hbl_A 44 YLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLT 102 (149)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEEC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeEC
Confidence 333333333578999999999999999999999999999999877665555 44444
No 265
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=51.12 E-value=76 Score=25.29 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=37.6
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
... +..+||+.+|+++..+=..+.+|...|-+.-.-|..++-
T Consensus 49 ~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 90 (144)
T 3f3x_A 49 EPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRR 90 (144)
T ss_dssp SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCc
Confidence 344 999999999999999999999999999999888877763
No 266
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=51.01 E-value=21 Score=29.01 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=32.2
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
-.++++.+||+.+|+|+.-+-+.+.+|...|.+..
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 46789999999999999999999999999998854
No 267
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=50.99 E-value=40 Score=24.36 Aligned_cols=61 Identities=8% Similarity=-0.001 Sum_probs=46.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 151 MKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 151 L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
+...+.++..+++..|.....++-.... .+.. ..+...|..+...++|.+|-..|..+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP--VGKD---EAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS--STHH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4568889999999999999988865322 2322 13446788888899999999999988753
No 268
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=50.90 E-value=1.3e+02 Score=28.01 Aligned_cols=99 Identities=12% Similarity=0.004 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCccccccccC-CchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCC-cHHH
Q psy7321 108 IRQHLALIYEREENWRDAANVLVGIPLETGQKQY-SVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK-DETL 185 (408)
Q Consensus 108 l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~-~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~-~~~l 185 (408)
....+|.++.+.|+|.+|...|.... .. +.....++++..-+.+-..+++..|..+..++..-..+.. ..+.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~------~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da 210 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAG------KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAI 210 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGG------GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh------ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHH
Confidence 66788899999999999999997531 12 2223456777788899999999999999999963211011 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
..+.+..+...+++-+|...|..+...
T Consensus 211 ----~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 211 ----AWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 235688888899999999999998865
No 269
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=50.76 E-value=17 Score=27.53 Aligned_cols=35 Identities=11% Similarity=0.302 Sum_probs=30.7
Q ss_pred ccccCChHHHHHHh-CCCHHHHHHHHHHHHhcCceE
Q psy7321 317 LYNNISFPELGALL-QISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 317 ~Ys~Itl~~La~lL-gls~e~~E~~ls~mI~~grl~ 351 (408)
.=+.--|.+++.+| +..+.++-+.+..||.+|+|.
T Consensus 18 ~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 18 SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 34555689999999 999999999999999999984
No 270
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=50.68 E-value=61 Score=29.45 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.+...++.+++..|++++|..++....- . .+..--.+|+.-++++...+++..|.....++-.... ..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~- 170 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLA-I-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHV- 170 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT-S-----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHH-
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHH-
Confidence 4567789999999999999999887531 1 1111112788889999999999999999999865322 22222
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDY-RRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~-~r~f~eAa~~y~e~~~t 216 (408)
+...+.+... .+++.+|-..|......
T Consensus 171 ---~~~~a~~~~~~~~~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 171 ---YVTAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp ---HHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122322222 47788888888777643
No 271
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=50.55 E-value=49 Score=27.67 Aligned_cols=42 Identities=12% Similarity=0.051 Sum_probs=33.9
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++..-+=..+.+|...|-|.-.-|..++
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~Dr 107 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDR 107 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC------
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCC
Confidence 456999999999999999999999999999999877755554
No 272
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=50.51 E-value=19 Score=28.13 Aligned_cols=63 Identities=14% Similarity=-0.020 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL 175 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~ 175 (408)
......||.++...|++++|...+.... +. ++. -.+.+.....++...+++..|...+.++-.
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l-----~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHAR-ML-----DPK-DIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456789999999999999999988742 11 221 246778889999999999999999888754
No 273
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=50.41 E-value=26 Score=28.91 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=35.8
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE---EeccC
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNG---YVDQI 357 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a---kIDqv 357 (408)
--.++++.+||+.+|+|+..+-..+.+|...|.|.. .+|..
T Consensus 14 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 14 YNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 345799999999999999999999999999998865 56753
No 274
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=49.76 E-value=23 Score=33.34 Aligned_cols=97 Identities=7% Similarity=0.033 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.+...+|..|...|+|.+|...+.... +. ++ .-...+....+.|+..+++..|...+.++-.... .+.+..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al-~~-----~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--~~~~a~ 301 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVL-TE-----EE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP--DDKAIR 301 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHH
Confidence 467889999999999999999988752 11 11 2356788899999999999999999999965432 233322
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q psy7321 187 VHYKVCYARVLDY-RRKFIEAAQRYSELSYK 216 (408)
Q Consensus 187 ~~y~~~~a~i~~~-~r~f~eAa~~y~e~~~t 216 (408)
. ..+.+... .+.+..+-..|..++..
T Consensus 302 ~----~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 302 R----ELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------------
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 1 23344333 33444555556566543
No 275
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=48.69 E-value=75 Score=26.27 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=38.3
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
....++.+|++.+|++..-+=..+.+|...|-|.-+.|..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 467899999999999999999999999999999998876665
No 276
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=48.68 E-value=41 Score=25.38 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=34.1
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEec
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akID 355 (408)
...++.+||+.+|+|..-+-..+..|...|-+...-+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999999999999999999999987644
No 277
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=48.60 E-value=12 Score=32.29 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=40.9
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhHH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWD 373 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W~ 373 (408)
--.+|-++||..+|++++.+-+.+.+|-.+|-|.- ..|-|...+++.|..+.
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~~~L~~~a 212 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVRL----GPGTVEVREAALLEEIA 212 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEeCHHHHHHHh
Confidence 45689999999999999999999999999999852 34666665555555443
No 278
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=48.58 E-value=80 Score=26.95 Aligned_cols=42 Identities=7% Similarity=0.146 Sum_probs=39.0
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|+++..+=..+.+|+..|-|.-.-|..++
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 568999999999999999999999999999999988887776
No 279
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=48.52 E-value=29 Score=29.61 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=38.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR 366 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~ 366 (408)
..++.++||+.+|+|+..+++++.++...|-+...=-+..|+.--..+
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLAL 74 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEecCCh
Confidence 459999999999999999999999999999987764444455544444
No 280
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=48.42 E-value=1e+02 Score=24.82 Aligned_cols=87 Identities=10% Similarity=0.028 Sum_probs=55.4
Q ss_pred HhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHHHHHHHHHHHH
Q psy7321 117 EREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARV 196 (408)
Q Consensus 117 e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i 196 (408)
...|++++|...+....-.. + .-.+.+....++|...+++..|..+..++-.... .++. .+...|.+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~------p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~----~~~~la~~ 87 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN------P-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAE----LYAALATV 87 (177)
T ss_dssp C-----CCCCHHHHHHHHHC------C-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHH----HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhC------C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHH----HHHHHHHH
Confidence 34567777776666532111 1 1246888899999999999999999998865432 2333 23345666
Q ss_pred -HHHHHHH--HHHHHHHHHHhcC
Q psy7321 197 -LDYRRKF--IEAAQRYSELSYK 216 (408)
Q Consensus 197 -~~~~r~f--~eAa~~y~e~~~t 216 (408)
+...++| -+|-..|..+...
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHh
Confidence 5567888 8888888887653
No 281
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=47.93 E-value=23 Score=28.42 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=37.3
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|+++..+-..+.+|...|-+.-.-|..++
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 456999999999999999999999999999999887775554
No 282
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=47.85 E-value=94 Score=24.80 Aligned_cols=37 Identities=5% Similarity=0.027 Sum_probs=33.3
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEec
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akID 355 (408)
...++.+||+.+|+|...+-..+..|...|-+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3689999999999999999999999999999977544
No 283
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=47.84 E-value=42 Score=25.34 Aligned_cols=45 Identities=4% Similarity=0.020 Sum_probs=36.7
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
.++..+||+.+|++..-+=..+.+|...|-+...-|+-...|...
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 389999999999999999999999999999954445444455544
No 284
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=47.50 E-value=23 Score=29.33 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=35.6
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++...+=..+.+|...|-|.-.-|..++
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~Dr 106 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQ 106 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccC
Confidence 458999999999999999999999999999999877765555
No 285
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=46.65 E-value=27 Score=30.33 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=39.0
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhH
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSW 372 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W 372 (408)
-.+|-++||..+|++++.+-+.+.+|..+|-|.- ..|.|...+++.|..+
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~~~L~~~ 225 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISDSERLARR 225 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcCHHHHHHh
Confidence 3589999999999999999999999999998753 3455665555444443
No 286
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=46.63 E-value=23 Score=30.23 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=38.6
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhh
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPS 371 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~ 371 (408)
-.+|-++||..+|++++.+-+.+.+|..+|-|.- ..|.|...+++.|..
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~~ 193 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIRS----GYGKIQLLDLKGLKE 193 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCHHHHHH
Confidence 3588999999999999999999999999999862 246666655444443
No 287
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=46.14 E-value=32 Score=27.32 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=34.4
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEec
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akID 355 (408)
...+..+||+.+|+|..-+-..+..|...|-+..+-+
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~ 66 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ 66 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec
Confidence 4679999999999999999999999999999988776
No 288
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=45.71 E-value=77 Score=23.73 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=30.9
Q ss_pred cCChHHHHHHhCCCHHH-HHHHHHHHHhcCceE
Q psy7321 320 NISFPELGALLQISAAK-AEKIASHMICEGRMN 351 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~-~E~~ls~mI~~grl~ 351 (408)
.++..+||+.+|+++.- +=..+.+|...|-+.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 69999999999999999 999999999999997
No 289
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=45.60 E-value=14 Score=28.31 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=30.8
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
+|..+||+.||+|...+-+.+.+|..+|.|..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999999876
No 290
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=45.41 E-value=80 Score=24.24 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=33.5
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEec
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akID 355 (408)
..+++.+||+.+|+|...+-..+..|...|-+...-+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4589999999999999999999999999999987644
No 291
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=45.09 E-value=33 Score=30.41 Aligned_cols=63 Identities=8% Similarity=0.104 Sum_probs=36.8
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCC-----------CchhhHHHHHHHHHHHHH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETR-----------EILPSWDKQIESLCYRID 384 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~-----------~~l~~W~~~I~~l~~~v~ 384 (408)
--.+|-++||..+|++++.+-+.+.+|..+|-|.- ..|-|...++ ..+..|.+.+.+|-..++
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~~ 248 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSRVLASLKRENILDK----KKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAALD 248 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSEEEESCHHHHHHHHTSSCCCC---------------
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe----CCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhhc
Confidence 34689999999999999999999999999998853 2344443332 356678777766655443
No 292
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=45.00 E-value=17 Score=31.57 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=39.2
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccC-CcEEEecCCCchhhH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQI-DSIVHFETREILPSW 372 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv-~giV~F~~~~~l~~W 372 (408)
--.+|-++||..+|++++.+-+.+.+|..+|-|. .. .|.|...+++.|..+
T Consensus 165 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~~i~i~d~~~L~~~ 216 (220)
T 2fmy_A 165 ELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE----RVNQRTLLLKDLQKLKEF 216 (220)
T ss_dssp ECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----ESSSSEEEESCHHHHHHH
T ss_pred eccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----EcCCCEEEEcCHHHHHHH
Confidence 3478999999999999999999999999999874 23 455665554445443
No 293
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=44.89 E-value=54 Score=29.64 Aligned_cols=64 Identities=20% Similarity=0.036 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
..+...+|.+|...|++++|...+....- .++ .-...+......+...+++..|..++.++-..
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALE------LDG-QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34557899999999999999999887431 112 12466778899999999999999998888643
No 294
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=44.84 E-value=27 Score=29.74 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=38.4
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhH
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSW 372 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W 372 (408)
.+|-++||..+|++++.+-+.+.+|..+|-|.- ..|-|...+++.|..+
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~~~ 187 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIAT----AYRRVYLLDLAALERE 187 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE----ETTEEEECCHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEeCHHHHHHH
Confidence 588999999999999999999999999998753 2455666555444443
No 295
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=43.82 E-value=66 Score=27.31 Aligned_cols=66 Identities=12% Similarity=-0.002 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhc---cHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccc
Q psy7321 106 ASIRQHLALIYEREE---NWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176 (408)
Q Consensus 106 a~l~~~LA~~~e~~g---d~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~ 176 (408)
...+..+|-.+...+ ++.+|..+|.++-- .-++..+-|.+....--|...+||.+|..+++++-..
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-----~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-----KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-----HSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456667777777766 88899999998632 2124456777788888899999999999999888653
No 296
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=43.24 E-value=43 Score=29.59 Aligned_cols=48 Identities=4% Similarity=0.045 Sum_probs=35.9
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchh
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILP 370 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~ 370 (408)
-.+|-.+||..+|++++-+-+.+.+|..+|-|.- ..|-|...+++.|.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~----~~~~i~I~d~~~L~ 239 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISI----HKKKITVHKPVTLS 239 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEECC-----
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE----cCCEEEECCHHHHH
Confidence 4678899999999999999999999999998863 24555555554443
No 297
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.16 E-value=35 Score=24.06 Aligned_cols=30 Identities=10% Similarity=0.347 Sum_probs=26.7
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICE 347 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~ 347 (408)
+...|.+++|+.+|+|+..+...+.+....
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 489999999999999999999999887643
No 298
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=43.10 E-value=88 Score=25.80 Aligned_cols=42 Identities=7% Similarity=0.023 Sum_probs=35.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
..++..+||+.+|++..-+=..+.+|...|-|.-.-|..++-
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 102 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRR 102 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCC
Confidence 489999999999999999999999999999999888877773
No 299
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=43.10 E-value=24 Score=26.25 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHh-ccccCChHHHHHHhCCCHHHHHHHHHHH
Q psy7321 305 AVTEHNLLSASK-LYNNISFPELGALLQISAAKAEKIASHM 344 (408)
Q Consensus 305 ~ViEhNi~~isk-~Ys~Itl~~La~lLgls~e~~E~~ls~m 344 (408)
.|.++=|-.+-. =|=+.+++.+|..+|++++++|..+...
T Consensus 32 ~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 32 ELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp HHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 344443333332 2889999999999999999999988653
No 300
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=42.96 E-value=53 Score=26.61 Aligned_cols=43 Identities=5% Similarity=0.038 Sum_probs=33.9
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE--EeccCCc
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNG--YVDQIDS 359 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a--kIDqv~g 359 (408)
....++..+||+.+|+++..+=..+.+|...|-+.- ..|..++
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~ 92 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQ 92 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC---------
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCC
Confidence 567899999999999999999999999999999986 3365555
No 301
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=42.81 E-value=5.1 Score=37.52 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=0.0
Q ss_pred ccCChHHHHHHh-CCCHHHHHHHHHHHHhcCceEEEecc
Q psy7321 319 NNISFPELGALL-QISAAKAEKIASHMICEGRMNGYVDQ 356 (408)
Q Consensus 319 s~Itl~~La~lL-gls~e~~E~~ls~mI~~grl~akIDq 356 (408)
.=|+++.|++.| +++++++.+.+-.|+.+|.|+..||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 345667888877 79999999999999999999999984
No 302
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=42.79 E-value=36 Score=33.06 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=38.3
Q ss_pred HHHHHHH---HHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 306 VTEHNLL---SASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 306 ViEhNi~---~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
+.++|.+ .+-+-...+|-.+||+.+|+|..-+-+.+.+|+.+|.+..
T Consensus 13 ~r~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 4455533 3334578899999999999999999999999999998854
No 303
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=41.46 E-value=33 Score=27.87 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=32.3
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..++..+||+.+|+++..+=..+.+|...|-|.-.-|..++
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 36899999999999999999999999999999877776666
No 304
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=41.33 E-value=25 Score=28.40 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=36.6
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++...+-..+.+|...|-+.-..|..++
T Consensus 52 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 52 HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCC
Confidence 357899999999999999999999999999999876665444
No 305
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=41.13 E-value=77 Score=24.03 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=34.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccC
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQI 357 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv 357 (408)
...++.+|++.+|+|...+-..+..|...|-+..+-+..
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 458999999999999999999999999999998766543
No 306
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=41.04 E-value=31 Score=30.14 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=35.5
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchh
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILP 370 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~ 370 (408)
.+|-++||..+|++++.+-+.+.+|..+| | ..+ .|-|...+++.|.
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~~--~~~i~I~d~~~L~ 223 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V--TVK--RNHAEIEDIALLR 223 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--ECC--TTEEEESCHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--Eee--CCEEEEcCHHHHH
Confidence 46678999999999999999999999999 6 333 4556655544443
No 307
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=40.95 E-value=1.4e+02 Score=28.64 Aligned_cols=102 Identities=8% Similarity=0.015 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCC-hHHHHHHHHHhccccccC
Q psy7321 102 EEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDED-PVQAEAFINRASLLQAET 180 (408)
Q Consensus 102 E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D-~~~A~~~i~Ka~~~~~~~ 180 (408)
.-.-+.+...++.++...|++++|...+..+.. . .+ .-.+.|.....++...++ +..|...+.++-....
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l-----~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-- 163 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIE-L-----NA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-- 163 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH-h-----Cc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--
Confidence 334566778889999999999999999887531 1 11 134677778888888885 9999999988865332
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 181 KDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 181 ~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
++.. .+...+.++...++|-+|-..|..+...
T Consensus 164 ~~~~----a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 164 KNYQ----VWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp TCHH----HHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2322 2334577777788999999999888753
No 308
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=40.65 E-value=57 Score=29.66 Aligned_cols=86 Identities=3% Similarity=-0.128 Sum_probs=57.7
Q ss_pred hccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHh-cc-ccccCCcHHHHHHHHHHHHHH
Q psy7321 119 EENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRA-SL-LQAETKDETLQVHYKVCYARV 196 (408)
Q Consensus 119 ~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka-~~-~~~~~~~~~lk~~y~~~~a~i 196 (408)
.|++++|.+++...-. . . + .-.++++.-+.++...|++.+|.....|+ .. ........++ ....+.+
T Consensus 182 ~~~~~~A~~~~~~al~-~-~---p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l----~~~~~~~ 250 (308)
T 2ond_A 182 SKDKSVAFKIFELGLK-K-Y---G--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI----WARFLAF 250 (308)
T ss_dssp SCCHHHHHHHHHHHHH-H-H---T--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH----HHHHHHH
T ss_pred cCCHHHHHHHHHHHHH-h-C---C--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH----HHHHHHH
Confidence 6999999999887521 1 1 1 13578888999999999999999998887 42 1111112333 3334566
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy7321 197 LDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 197 ~~~~r~f~eAa~~y~e~~~ 215 (408)
....+++-+|-..|.....
T Consensus 251 ~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 251 ESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666777777777777664
No 309
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=40.56 E-value=1.6e+02 Score=26.53 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=40.3
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecC
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFET 365 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~ 365 (408)
-.....|.++||+.+|+|+..++..+.+|...|-+. ++ .+|.|..+.
T Consensus 174 l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~-~~--~~~~~~~~~ 220 (232)
T 2qlz_A 174 LLNGRATVEELSDRLNLKEREVREKISEMARFVPVK-II--NDNTVVLDE 220 (232)
T ss_dssp HHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE-EE--TTTEEEECH
T ss_pred HhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE-Ee--cCCeEEecH
Confidence 457899999999999999999999999999999887 32 567777654
No 310
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=40.27 E-value=26 Score=27.31 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=31.8
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
.++..+||+.+|+|..-+-+.+..|..+|-+...
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999999999999999999999764
No 311
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=39.01 E-value=1.6e+02 Score=24.06 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=37.7
Q ss_pred cccCChHHHHHHh-CCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALL-QISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lL-gls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
....+|.+|++.+ |+|+.-+=..|.+|..+|-|.-+.+..++
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~ 79 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVP 79 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 5678999999999 99999999999999999999887776554
No 312
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=38.71 E-value=59 Score=28.43 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=33.2
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
..++..+||+.+|+|+..+-..+.+|...|.|...
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999999999776
No 313
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=38.42 E-value=43 Score=32.90 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=37.9
Q ss_pred HHHHHHHHHH---hccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 306 VTEHNLLSAS---KLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 306 ViEhNi~~is---k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
+.++|.+.+- +-...+|-.+||+.+|+|..-+-+.+.+|+.+|.+.-
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3455543333 3467899999999999999999999999999998854
No 314
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=37.69 E-value=33 Score=35.86 Aligned_cols=95 Identities=11% Similarity=-0.065 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHHH
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQ 186 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~lk 186 (408)
.....+|..|...|++++|...+....-.. + .-.+.+.....+++..+++..|.....++-.... ++.+.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~- 503 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV------G-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP--GELAP- 503 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCSHH-
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC------c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHH-
Confidence 456778999999999999999988753211 1 1256788889999999999999999999875432 23222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7321 187 VHYKVCYARVLDYRRKFIEAAQRYSELSY 215 (408)
Q Consensus 187 ~~y~~~~a~i~~~~r~f~eAa~~y~e~~~ 215 (408)
+...|.++...++|-+ -..|..+..
T Consensus 504 ---~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 504 ---KLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp ---HHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred ---HHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 2345777777788887 777777664
No 315
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=37.17 E-value=42 Score=29.50 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=39.5
Q ss_pred cCChHHHHHHhCCCH-HHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhHH
Q psy7321 320 NISFPELGALLQISA-AKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWD 373 (408)
Q Consensus 320 ~Itl~~La~lLgls~-e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W~ 373 (408)
.+|-.+||..+|+++ +.+-+.+.+|-.+|-|.-. .|-|...+++.|..+.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~----~~~i~I~d~~~L~~~~ 219 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK----NSCFYVQNLDYLKRYA 219 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE----TTEEEESCHHHHHHHC
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec----CCEEEEeCHHHHHHHh
Confidence 688899999999999 8999999999999987542 4556665555555443
No 316
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=36.98 E-value=41 Score=29.55 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=35.7
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...++..+||+.+|++...+=..+.+|...|-|.-.-|..++
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~Dr 101 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDK 101 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC----
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 357999999999999999999999999999999988877666
No 317
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=36.83 E-value=1.7e+02 Score=23.84 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=39.5
Q ss_pred HhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 315 SKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 315 sk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
.+.-..++..+||+.+|+++.-+=..+.+|...|-+.=.-|..|+
T Consensus 41 ~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 41 NRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp HHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 333456778999999999999999999999999999988888887
No 318
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=36.65 E-value=39 Score=29.16 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=37.0
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCch
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREIL 369 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l 369 (408)
--.+|-++||..+|++++.+-+.+.+|-.+|-|.- ..|-|...+++.|
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~~~L 223 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL----DGREISILDRERL 223 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE----SSSCEEESCSTTT
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe----cCCEEEEeCHHHH
Confidence 34578899999999999999999999999998853 2344544444433
No 319
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=36.65 E-value=33 Score=29.11 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=30.3
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
.+|-++||..+|++++.+-+.+.+|..+|-|.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 58999999999999999999999999999885
No 320
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=36.33 E-value=45 Score=25.88 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=37.5
Q ss_pred cccCChHHHHHHh-CCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 318 YNNISFPELGALL-QISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 318 Ys~Itl~~La~lL-gls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
...+++.+|++.+ |+++.-+=..+.+|...|-|.-+.|..++
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4568999999999 59999999999999999999988876655
No 321
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=36.06 E-value=40 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=24.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
...|.+++|+.+|+|+..+...+.+...
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999988877653
No 322
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=36.05 E-value=60 Score=25.97 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=32.7
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
.-..+++.+||+.+|++..-+-+.+.+|...|-+.-
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 346799999999999999999999999999998864
No 323
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=35.28 E-value=45 Score=20.93 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=23.6
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
....+..++|+.||+|..-+...+.+.-.
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 46689999999999999988887765433
No 324
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=35.09 E-value=53 Score=26.48 Aligned_cols=44 Identities=5% Similarity=-0.015 Sum_probs=36.4
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
...++..+||+.+|+|+.-+=..+.+|...|-+.-. +++.+...
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT 63 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLT 63 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEEC
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEc
Confidence 356999999999999999999999999999998764 33555544
No 325
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=34.69 E-value=60 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.157 Sum_probs=25.6
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
++.-.+.+++|+.+|+|+.-+...+.+...
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 466789999999999999999988887654
No 326
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=34.27 E-value=26 Score=28.76 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=34.8
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
.....++..+||+.+|++...+-..+.+|+..|-|.-.-|..++
T Consensus 58 ~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~ 101 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDR 101 (160)
T ss_dssp HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC------
T ss_pred HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCC
Confidence 34568999999999999999999999999999999876655544
No 327
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=34.16 E-value=62 Score=28.26 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=30.7
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
-.+|-++||..+|++++.+-+.+.+|..+|-|.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999999999885
No 328
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=33.63 E-value=57 Score=25.98 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=41.0
Q ss_pred hCCCHHHHHHHHHHHHhcCceEEEeccC-Cc--EEEec-CC---CchhhHHHHHHHHHHHHHHHHH
Q psy7321 330 LQISAAKAEKIASHMICEGRMNGYVDQI-DS--IVHFE-TR---EILPSWDKQIESLCYRIDHIME 388 (408)
Q Consensus 330 Lgls~e~~E~~ls~mI~~grl~akIDqv-~g--iV~F~-~~---~~l~~W~~~I~~l~~~v~~v~~ 388 (408)
+++++..+-..+.+|..+|-|...-+.. +| -..+. ++ +.+..|......+...++.+..
T Consensus 38 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~il~ 103 (115)
T 4esb_A 38 TFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQSWGMVSTTVNNLLQ 103 (115)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3589999999999999999999876532 22 22332 22 5778888777666666666554
No 329
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=33.61 E-value=2e+02 Score=24.36 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHh----hccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhh----cCChHHHHHHHHHhcccc
Q psy7321 106 ASIRQHLALIYER----EENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLE----DEDPVQAEAFINRASLLQ 177 (408)
Q Consensus 106 a~l~~~LA~~~e~----~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~i~Ka~~~~ 177 (408)
......|+.+|.. .+|+.+|.+.+...- +. -+...-.+.+.....+|.. .+|+.+|..+..++....
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 159 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAA-RD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS 159 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-SS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-Hc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Confidence 4455788999988 889999999988742 11 1111236777788888988 899999999999986541
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHhc
Q psy7321 178 AETKDETLQVHYKVCYARVLDYR-R-----KFIEAAQRYSELSY 215 (408)
Q Consensus 178 ~~~~~~~lk~~y~~~~a~i~~~~-r-----~f~eAa~~y~e~~~ 215 (408)
+++.- ....+.++... + ++.+|...|.....
T Consensus 160 ---~~~~a----~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 160 ---RTGYA----EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp ---CTTHH----HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred ---CCHHH----HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 22221 11345555432 2 78888888877764
No 330
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=33.50 E-value=43 Score=29.07 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=38.0
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchh
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILP 370 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~ 370 (408)
--.+|-++||..+|++++.+-+.+.+|-.+|-|.- ..|-|...+++.|.
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~ 221 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEV----SPRSVTLLDLAALE 221 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSCEEESCHHHHH
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe----cCCEEEEeCHHHHH
Confidence 34689999999999999999999999999998853 23555554444443
No 331
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=33.42 E-value=1.3e+02 Score=29.25 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHh----hccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhh----cCChHHHHHHHHHhc
Q psy7321 107 SIRQHLALIYER----EENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLE----DEDPVQAEAFINRAS 174 (408)
Q Consensus 107 ~l~~~LA~~~e~----~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~i~Ka~ 174 (408)
.....|+.+|.. .+|+.+|...+...- +. + -.+.+.....+|.. .+|+.+|..+..++.
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~-~~--~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 106 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAA-EQ--G------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA 106 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH-HC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 444567777776 677777777766531 11 0 12445555666666 677777776666664
No 332
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=33.29 E-value=22 Score=28.93 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=27.4
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~gi 360 (408)
..++..+||+.+|+++..+=..+.+|...|-+.-.-|..++-
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR 97 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNAR 97 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCch
Confidence 689999999999999999999999999999998777666653
No 333
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=33.08 E-value=89 Score=28.45 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=37.0
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
..++..+||+.+|+|..-+-+.+.+|...|-+... +..+.+...
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEEC
Confidence 56999999999999999999999999999999875 334555443
No 334
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=32.99 E-value=42 Score=28.52 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=30.4
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
.+|-++||..+|++++.+-+.+.+|-.+|-|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 68899999999999999999999999999886
No 335
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=32.81 E-value=1e+02 Score=30.42 Aligned_cols=99 Identities=9% Similarity=-0.043 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHHH
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETL 185 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~l 185 (408)
..+...+|.++++.|++++|..++.... +. ++..-..+|+.-++++...+++..|.....++-.... ..+..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al-~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~~~ 392 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLL-AI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHV 392 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HS-----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCTHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh-Cc-----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--CchHH
Confidence 3455677888888999999988888753 11 1111124777888888888888999888888865321 12221
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Q psy7321 186 QVHYKVCYARV-LDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 186 k~~y~~~~a~i-~~~~r~f~eAa~~y~e~~~t 216 (408)
+...+.+ +...+++.+|-..|..+...
T Consensus 393 ----~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 393 ----YVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp ----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 1122222 12346677777777766543
No 336
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=32.76 E-value=1.3e+02 Score=29.12 Aligned_cols=92 Identities=15% Similarity=0.132 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHh----hccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhh----cCChHHHHHHHHHhccccc
Q psy7321 107 SIRQHLALIYER----EENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLE----DEDPVQAEAFINRASLLQA 178 (408)
Q Consensus 107 ~l~~~LA~~~e~----~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~i~Ka~~~~~ 178 (408)
.....|+.+|.. .+|+++|.+.+...- +. + -.+.+.....+|.. .+|+.+|..+..|+...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~--~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-- 180 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQ--G------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-- 180 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 334568888888 789999988887642 11 1 23556666777776 77888888888777542
Q ss_pred cCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Q psy7321 179 ETKDETLQVHYKVCYARVLDY----RRKFIEAAQRYSELSY 215 (408)
Q Consensus 179 ~~~~~~lk~~y~~~~a~i~~~----~r~f~eAa~~y~e~~~ 215 (408)
+++.- ....+.++.. .+++.+|...|..+..
T Consensus 181 --~~~~a----~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 181 --GNVWS----CNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp --TCHHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --CCHHH----HHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 23221 1234555544 5666666666666543
No 337
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=32.49 E-value=43 Score=28.96 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=30.2
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
.+|-++||..+|++++.+-+.+.+|..+|-|.
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47899999999999999999999999999885
No 338
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=32.41 E-value=3.4e+02 Score=25.97 Aligned_cols=123 Identities=13% Similarity=0.121 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHhccCCc---hhhHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHhh-------------------c-cc
Q psy7321 3 ISTLKTQLAALSSQAGSH---KDQADKYRSILELILKNQDTTTCTECLNLFVEAIVN-------------------E-NV 59 (408)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~---~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-------------------e-~v 59 (408)
|..+-++|.+--.. |+- =+--+.|+.+-+..++.+.-.+.++=|-.-...++. + .+
T Consensus 12 ~~~~i~rl~~~I~~-G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~ 90 (336)
T 3lpz_A 12 IERIIARLQRRIAE-GQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQ 90 (336)
T ss_dssp HHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 34445555554444 333 344556777777776655443333322222222221 1 11
Q ss_pred hhhchHHHHHHHHHHhcCCCCc--chhchHHHHHhhhcC-ccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHh
Q psy7321 60 SLVISRQILTDVSTHLVSQPDE--VAKPVSHFTLDKVQP-RVISFEEQVASIRQHLALIYEREENWRDAANVLV 130 (408)
Q Consensus 60 ~~~~~r~iv~~~~~~l~~l~~~--~~~~~~~~~L~~i~~-~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~ 130 (408)
. ++-.-+..+++.+..+|+. ..+..+..+|.|-+. |.--+ =.-.|...+|..|-++|++.+|..-+.
T Consensus 91 ~--~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~--Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 91 R--VDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPA--GDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp C--CCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTT--CCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred C--CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 1 1123555666777777754 346667778888753 21111 134566789999999999999987764
No 339
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=32.25 E-value=50 Score=22.91 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=25.2
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
++...|.+++|+.+|+|+..+...+.+..
T Consensus 28 ~~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 28 QLLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57889999999999999998888877654
No 340
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=31.62 E-value=1e+02 Score=25.13 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=28.8
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCc
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDS 359 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~g 359 (408)
..+|..+||+.+|+++.-+=..+.+|...|-+. +.|..|+
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~Dr 90 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADA 90 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--------
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCC
Confidence 459999999999999999999999999999884 4565555
No 341
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=31.30 E-value=1.1e+02 Score=24.26 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=62.9
Q ss_pred HHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhh----cCChHHHHHHHHHhccccccCCcHHHHH
Q psy7321 112 LALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLE----DEDPVQAEAFINRASLLQAETKDETLQV 187 (408)
Q Consensus 112 LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~i~Ka~~~~~~~~~~~lk~ 187 (408)
|+.+|...+.+++|.+.+...- +. .-.+-+.....+|.. .+|+.+|..+..|+... ++++-.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa-~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~a~- 96 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKAC-EL--------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQDGC- 96 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHH-HT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHH-cC--------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CCHHHH-
Confidence 8899998888888888877631 11 113556677888888 89999999999999753 333322
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Q psy7321 188 HYKVCYARVLDY----RRKFIEAAQRYSELSYK 216 (408)
Q Consensus 188 ~y~~~~a~i~~~----~r~f~eAa~~y~e~~~t 216 (408)
...+.++.. .+|+.+|...|......
T Consensus 97 ---~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 97 ---LILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp ---HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 234666666 68899998888877653
No 342
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=31.27 E-value=99 Score=30.78 Aligned_cols=105 Identities=12% Similarity=-0.019 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCC
Q psy7321 102 EEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETK 181 (408)
Q Consensus 102 E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~ 181 (408)
++-+-+--..||+.+.+.|+|.|||-+|. ++.+... .++...+...+..- -+-..-.+.+-+.++.++-..+..++
T Consensus 31 ~el~i~~l~~L~~~h~~~~ny~EAa~~l~-lhA~l~~--w~~~~~~~~~~~~~-~~~~qt~~~~ke~L~~~~i~~f~kg~ 106 (436)
T 2yin_A 31 EEMYIRYLYKLRDLHLDCDNYTEAAYTLL-LHTWLLK--WSDEQCASQVMQTG-QQHPQTHRQLKETLYETIIGYFDKGK 106 (436)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHTTCC--SSCCC---------------CHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHH-HHHHHhC--CCccccCcccccCC-CCccccHHHHHHHHHHHHHHHHHhcC
Confidence 44466667899999999999999999984 2333311 11111111000000 00000011222333444444444455
Q ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy7321 182 DETLQVHYKVCYARVLDYR-RKFIEAAQRY 210 (408)
Q Consensus 182 ~~~lk~~y~~~~a~i~~~~-r~f~eAa~~y 210 (408)
.|+.-+..+...+.+|-.. +||...|..+
T Consensus 107 ~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~ 136 (436)
T 2yin_A 107 MWEEAISLCKELAEQYEMEIFDYELLSQNL 136 (436)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555555554 5666555444
No 343
>2x49_A INVA, invasion protein INVA; protein transport, transport, pathogenesis; 1.50A {Salmonella enterica subsp} PDB: 2x4a_A* 3lw9_A
Probab=30.92 E-value=2.1e+02 Score=27.43 Aligned_cols=72 Identities=11% Similarity=0.215 Sum_probs=51.4
Q ss_pred HHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHH
Q psy7321 27 YRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVA 106 (408)
Q Consensus 27 y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a 106 (408)
|-.|++++ ...=+ ...+...++.+|.|.|++--=|.|+..+++|-+...|... + .|.=|.
T Consensus 161 ~p~LveEl-p~~l~---l~~i~~VLq~LL~E~VsIRdl~tIlEaLae~a~~~kD~~~---L-------------tE~VR~ 220 (333)
T 2x49_A 161 FPDLLKEV-LRHAT---VQRISEVLQRLLSERVSVRNMKLIMEALALWAPREKDVIN---L-------------VEHIRG 220 (333)
T ss_dssp CHHHHHHH-HTTSC---HHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTTTCCCHHH---H-------------HHHHHH
T ss_pred ChHHHHHH-hccCC---HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHhcccCCHHH---H-------------HHHHHH
Confidence 55677776 32222 5678999999999999999999999999999876554321 1 233377
Q ss_pred HHHHHHHHHHHh
Q psy7321 107 SIRQHLALIYER 118 (408)
Q Consensus 107 ~l~~~LA~~~e~ 118 (408)
+|...++.-|..
T Consensus 221 aL~r~I~~~~~~ 232 (333)
T 2x49_A 221 AMARYICHKFAN 232 (333)
T ss_dssp HTHHHHHHHHHT
T ss_pred HHHHHHHHHhCC
Confidence 777777766654
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.77 E-value=75 Score=23.10 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=36.1
Q ss_pred ccCChHHHHHHh-----CCCHHHHHHHHHHHHhcCceEEEeccCCcEEEe
Q psy7321 319 NNISFPELGALL-----QISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363 (408)
Q Consensus 319 s~Itl~~La~lL-----gls~e~~E~~ls~mI~~grl~akIDqv~giV~F 363 (408)
.-+|.++|++.+ ++|..-+-..+..|...|.+. ++.-.+|...|
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~-~~~~~~~~~~y 80 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT-RHNFEGGKSVF 80 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE-EEECGGGCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE-EEeeCCCceEe
Confidence 468999999999 999999999999999999987 44444454444
No 345
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.76 E-value=52 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.318 Sum_probs=25.4
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
...|+.++|+.+|+|+..+...+.+...
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998888763
No 346
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=30.62 E-value=68 Score=24.02 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=30.8
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
.|...||..||++-..+-+.+.+|-..|.+...
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 888999999999999999999999999998764
No 347
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=30.58 E-value=1e+02 Score=29.73 Aligned_cols=98 Identities=14% Similarity=0.056 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhhcc-HHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccccCCcHH
Q psy7321 106 ASIRQHLALIYEREEN-WRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDET 184 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd-~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~~~~~~~ 184 (408)
......++.++...|+ +++|...+..... . .++ -.+.|.....++...+++..|.....|+-.... .+..
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-l-----~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--~~~~ 201 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIE-E-----QPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA--KNYH 201 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-H-----CTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHH-H-----CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--cCHH
Confidence 3445678899999996 9999999887532 1 111 356788888889999999999999999875322 2322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7321 185 LQVHYKVCYARVLDYRRKFIEAAQRYSELSYK 216 (408)
Q Consensus 185 lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t 216 (408)
-+...+.++...++|-+|-.+|..+...
T Consensus 202 ----a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 202 ----AWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp ----HHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 2335677777888999999999988764
No 348
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=30.26 E-value=46 Score=28.81 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=30.3
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
-.+|-..||..+|++++.+-+.+.+|..+|-|.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 348899999999999999999999999999874
No 349
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=30.10 E-value=2.1e+02 Score=22.70 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=28.4
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
+..++++..+|++++.++..+..++..|++..
T Consensus 18 ~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~ 49 (135)
T 2v9v_A 18 LDWQEAATRASLSLEETRKLLQSMAAAGQVTL 49 (135)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEE
Confidence 44499999999999999999999999999654
No 350
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=29.87 E-value=1.8e+02 Score=33.93 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhc
Q psy7321 107 SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRAS 174 (408)
Q Consensus 107 ~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~ 174 (408)
.+-..+|+.+++.|++++|.+.+..- .=.+.|.+.+..+-..|+|..|-.++.++.
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------------dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34457899999999999999887542 112455666777777777777777765543
No 351
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=29.62 E-value=1.5e+02 Score=22.87 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=42.2
Q ss_pred HHhCCCHHHHHHHHHHHHhcCceEEEeccCCc--EEEec-CC---CchhhHHHHHHHHHHHHHHHH
Q psy7321 328 ALLQISAAKAEKIASHMICEGRMNGYVDQIDS--IVHFE-TR---EILPSWDKQIESLCYRIDHIM 387 (408)
Q Consensus 328 ~lLgls~e~~E~~ls~mI~~grl~akIDqv~g--iV~F~-~~---~~l~~W~~~I~~l~~~v~~v~ 387 (408)
+.+++++..+-..+.+|..+|-|...-+..+| ...+. ++ +.+..|......+...++.+.
T Consensus 34 ~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~~~~i~~~l 99 (108)
T 3l7w_A 34 LIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVYKMTIDGIV 99 (108)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999988764343 22222 22 567777777766666666544
No 352
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=29.61 E-value=1.6e+02 Score=34.26 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=42.5
Q ss_pred HHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcc
Q psy7321 111 HLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL 175 (408)
Q Consensus 111 ~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~ 175 (408)
.+|..+++.|+|.+|...+.. +..|.+.++.++..+++..|-....||+.
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~k---------------A~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNN---------------VSNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHh---------------hhHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 588888888888888888765 24788899999999999999999999865
No 353
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.80 E-value=94 Score=23.16 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=25.8
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
+|...|..++|+.||+|+.-+...+.+..
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 68899999999999999999988887754
No 354
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=28.69 E-value=46 Score=32.09 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=35.1
Q ss_pred HHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEE
Q psy7321 312 LSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 312 ~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~a 352 (408)
+.+-+ ...+|-.+||+.+|+|..-+-+.+.+|+.+|.+..
T Consensus 26 l~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 26 LKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp HHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 33445 78899999999999999999999999999999854
No 355
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=28.69 E-value=93 Score=30.10 Aligned_cols=77 Identities=10% Similarity=-0.024 Sum_probs=56.5
Q ss_pred hhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHH
Q psy7321 93 KVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINR 172 (408)
Q Consensus 93 ~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~K 172 (408)
|+.+-.-.+++.+..+...+++.+.+.|++.+|...+..+- .. -+..+ +++-..|+.+...++...|-..+.+
T Consensus 158 w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~-~~----~P~~E--~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 158 FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT-FE----HPYRE--PLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH----STTCH--HHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh----CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333456777888888889999999999999998888752 22 12233 3677789999999999999887777
Q ss_pred hccc
Q psy7321 173 ASLL 176 (408)
Q Consensus 173 a~~~ 176 (408)
....
T Consensus 231 ~r~~ 234 (388)
T 2ff4_A 231 VKTT 234 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 356
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=28.32 E-value=2e+02 Score=29.61 Aligned_cols=83 Identities=14% Similarity=0.036 Sum_probs=48.6
Q ss_pred HHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhcccc------ccCCcHHHHHHH
Q psy7321 116 YEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQ------AETKDETLQVHY 189 (408)
Q Consensus 116 ~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~------~~~~~~~lk~~y 189 (408)
....|++++|.++...+. .. ..|-..+++++..+|+..|+..+.++.... ...++++.-
T Consensus 662 ~l~~~~~~~A~~~~~~~~---------~~---~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~--- 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES---------AE---MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGL--- 726 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC---------CH---HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH---
T ss_pred hhhcCCHHHHHHHHHhhC---------cH---hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHH---
Confidence 345566666666644431 11 466777888888888888888776665321 112233321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7321 190 KVCYARVLDYRRKFIEAAQRYSELS 214 (408)
Q Consensus 190 ~~~~a~i~~~~r~f~eAa~~y~e~~ 214 (408)
..++.+....++|..|..+|+..-
T Consensus 727 -~~~~~~a~~~~~~~~A~~~~~~~g 750 (814)
T 3mkq_A 727 -VTLAKDAETTGKFNLAFNAYWIAG 750 (814)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -HHHHHHHHHcCchHHHHHHHHHcC
Confidence 134566666677777777776653
No 357
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=27.82 E-value=1.8e+02 Score=26.04 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=37.2
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEe
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F 363 (408)
..+|...++..||+|+.-+...|-.++.+|.+.-= |++.|+-+|
T Consensus 167 g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D-~~~eg~~y~ 210 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD-DSVEGLRFY 210 (218)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ESSSCEEEE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE-CCCCceEEe
Confidence 56999999999999999999999999999987432 477785554
No 358
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=27.67 E-value=1.4e+02 Score=20.12 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=33.1
Q ss_pred cccCChHHHHHHh-----CCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 318 YNNISFPELGALL-----QISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 318 Ys~Itl~~La~lL-----gls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
-..+|.++|++.| ++|..-+-..+.+ .|.+ ++...+|...|.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~---lg~v--~~~~~~~~~~Y~ 63 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKE---LHLV--KVPTNNGSYKYS 63 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH---HTCE--EEEETTTEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH---cCCE--EEecCCCceeee
Confidence 4578999999999 9999999888883 3665 677777776653
No 359
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=26.97 E-value=87 Score=23.50 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=31.5
Q ss_pred cccCChHHHHHHhCCCHH-HHHHHHHHHHhcCceEE
Q psy7321 318 YNNISFPELGALLQISAA-KAEKIASHMICEGRMNG 352 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e-~~E~~ls~mI~~grl~a 352 (408)
-...+-..||+.||+++. .+-..+.+|-.+|.+..
T Consensus 23 ~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 23 VSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp TCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 345788999999999999 99999999999999973
No 360
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=26.93 E-value=1.2e+02 Score=23.67 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=36.9
Q ss_pred ccccC-ChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEe
Q psy7321 317 LYNNI-SFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363 (408)
Q Consensus 317 ~Ys~I-tl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F 363 (408)
+=..+ +...||+.||+|..-+-+-+..+..+|-|..+ +..|+..-
T Consensus 29 ~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~ 74 (113)
T 3tqn_A 29 EGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVK 74 (113)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence 45677 88999999999999999999999999998654 45565443
No 361
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=26.84 E-value=52 Score=26.66 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=31.9
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccC
Q psy7321 321 ISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQI 357 (408)
Q Consensus 321 Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv 357 (408)
+|.+.||+.+|+|+..+-+.+.+++..|-|.=+-|..
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTD 88 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC---
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEEC
Confidence 8999999999999999999999999999987655533
No 362
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=26.62 E-value=1.1e+02 Score=22.37 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=26.1
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
++...+.+++|+.||+|+.-+...+.+...
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 367889999999999999999998887654
No 363
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=26.58 E-value=2.1e+02 Score=28.02 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHH
Q psy7321 26 KYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQV 105 (408)
Q Consensus 26 ~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~ 105 (408)
.|-.|+.++....-+ +..+..+++.+|.|.|++--=|.|+..+++|-+...|... + .|.=|
T Consensus 205 ~~P~LVeEl~p~~l~---l~~i~~VLq~LL~E~VsIRdlrtIlEaLae~a~~~kD~~~---L-------------tE~VR 265 (382)
T 3mix_A 205 SYPVLVEEVTPNPLS---VGDIQKVLAKLLKEKVSIRNLVTIFETLADYGKLTTDSDL---L-------------TEYTR 265 (382)
T ss_dssp HCHHHHHHHTTTTCC---HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHTTTCCCHHH---H-------------HHHHH
T ss_pred HChHHHHHhcccCCC---HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHhcccCCHHH---H-------------HHHHH
Confidence 477788887532222 5788999999999999999999999999999876555321 1 23336
Q ss_pred HHHHHHHHHHHHhh
Q psy7321 106 ASIRQHLALIYERE 119 (408)
Q Consensus 106 a~l~~~LA~~~e~~ 119 (408)
.+|...++.-|...
T Consensus 266 ~aL~R~I~~~~~~~ 279 (382)
T 3mix_A 266 QALAKQITAQFAKE 279 (382)
T ss_dssp HHTHHHHHHHHCCT
T ss_pred HHHHHHHHHHhccC
Confidence 77777776665443
No 364
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.14 E-value=4.2e+02 Score=25.67 Aligned_cols=68 Identities=7% Similarity=-0.110 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhc
Q psy7321 106 ASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRAS 174 (408)
Q Consensus 106 a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~ 174 (408)
..+...+..++-..|||..|...+..+..-- ...-+...+..+.....+.++..+||..|-.+.--+.
T Consensus 168 id~~l~~irl~l~~~d~~~~~~~~~ka~~~~-~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 168 IDVMLTIARLGFFYNDQLYVKEKLEAVNSMI-EKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence 4455566677778899999988888764222 2223445566777788999999999999987755443
No 365
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=25.89 E-value=63 Score=28.93 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=30.3
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMN 351 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ 351 (408)
.+|-.+||..+|++++.+-+.+.+|..+|-|.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 68899999999999999999999999999885
No 366
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=25.61 E-value=96 Score=24.11 Aligned_cols=46 Identities=4% Similarity=-0.002 Sum_probs=36.2
Q ss_pred ccccC-ChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEE
Q psy7321 317 LYNNI-SFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVH 362 (408)
Q Consensus 317 ~Ys~I-tl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~ 362 (408)
+=..+ +..+||+.||+|..-+-+.+..+..+|.|...=.-..|+..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred CCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 34566 99999999999999999999999999998764311345543
No 367
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=25.54 E-value=1e+02 Score=29.41 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=42.2
Q ss_pred chHHHHHHHhchh-hhhhhcchhhhHHHHHHHHHHHHHHhccc----cCChHHHHHHhCCC-HHHHHHHH
Q psy7321 278 SELQDFAALLKPH-QKAITVDGSSILERAVTEHNLLSASKLYN----NISFPELGALLQIS-AAKAEKIA 341 (408)
Q Consensus 278 ~~l~~F~~~L~~h-~~~~~~d~~~~L~~~ViEhNi~~isk~Ys----~Itl~~La~lLgls-~e~~E~~l 341 (408)
+.+..|.+.++.. ...+..--....-..++..-+..+++.|. +++++.|++.||.+ +++++..+
T Consensus 177 gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~ 246 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC 246 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 4577777776531 11111101123345688888888999994 89999999999995 67666555
No 368
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=25.40 E-value=1.1e+02 Score=22.86 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhcCceEE
Q psy7321 333 SAAKAEKIASHMICEGRMNG 352 (408)
Q Consensus 333 s~e~~E~~ls~mI~~grl~a 352 (408)
|.++++..+.++|.+|+|.+
T Consensus 46 t~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 46 TLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp CHHHHHHHHHHHHHTTSEEC
T ss_pred CHHHHHHHHHHHHhCCeEEE
Confidence 34677788999999999874
No 369
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=25.09 E-value=27 Score=26.56 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCceEEEec
Q psy7321 334 AAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 334 ~e~~E~~ls~mI~~grl~akID 355 (408)
.+.+|..+..|...|+|.++||
T Consensus 36 A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 36 VEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 3578999999999999999985
No 370
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=25.09 E-value=64 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=24.7
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHM 344 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~m 344 (408)
|=+.++++++..+|++++++|..+...
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~i 63 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQKV 63 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 888999999999999999999998754
No 371
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.08 E-value=81 Score=25.39 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=26.3
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
.++...|..++|+.||+|+..+...+.+..
T Consensus 120 ~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 478899999999999999999988887754
No 372
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=24.92 E-value=1.3e+02 Score=21.31 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=26.1
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
++...+.+++|+.+|+|+.-+...+.+...
T Consensus 28 ~~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HTTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468889999999999999999988887664
No 373
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=24.88 E-value=2.4e+02 Score=21.70 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=32.0
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
..+++.++|+.+|+|..-+-..+..|...|.+.-.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999999988653
No 374
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=24.53 E-value=1.1e+02 Score=23.99 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=32.8
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEec
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akID 355 (408)
..++.+||+.+|+|..-+-+.+..|...|-+..+-|
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 478899999999999999999999999999987654
No 375
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=24.50 E-value=1.8e+02 Score=28.51 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=51.0
Q ss_pred HHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcchhchHHHHHhhhcCccchHHHHHH
Q psy7321 27 YRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVA 106 (408)
Q Consensus 27 y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~~~~~~~~L~~i~~~~i~~E~e~a 106 (408)
|-.|++++....= -+..+...++.+|.|.|++--=|.|+..+++|-+...|... + .|.=|.
T Consensus 217 ~p~LVeEl~p~~l---~l~~i~~VLq~LL~E~VsIRdlrtIlEaLae~a~~~kD~~~---L-------------tE~VR~ 277 (389)
T 3a5i_A 217 MPKLTEDLVPGVV---TLTTLHKVLQNLLAEKVPIRDMRTILETLAEHAPLQSDPHE---L-------------TAVVRV 277 (389)
T ss_dssp CHHHHHTTTTTTS---CHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHGGGCCCHHH---H-------------HHHHHH
T ss_pred ChHHHHHhccCCc---CHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHhcccCCHHH---H-------------HHHHHH
Confidence 5566666642221 15678999999999999999999999999999876554321 1 233377
Q ss_pred HHHHHHHHHHHh
Q psy7321 107 SIRQHLALIYER 118 (408)
Q Consensus 107 ~l~~~LA~~~e~ 118 (408)
+|...++.-|..
T Consensus 278 aL~R~I~~~~~~ 289 (389)
T 3a5i_A 278 ALGRAITQQWFP 289 (389)
T ss_dssp HTHHHHHHHHSC
T ss_pred HHHHHHHHHHcC
Confidence 777777766653
No 376
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=24.47 E-value=1.8e+02 Score=25.03 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=30.9
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
-.|..+||+.||++..-+-..+.+|-..|-|...
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 4899999999999998999999999999998654
No 377
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=24.39 E-value=82 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.374 Sum_probs=24.5
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
...|++++|+.+|+|+..+...+.+.+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6899999999999999999888877654
No 378
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=23.83 E-value=1.3e+02 Score=25.69 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=30.6
Q ss_pred cCChHHHHHHhCCCHHHHHHHHHHHHhcCc-eEE
Q psy7321 320 NISFPELGALLQISAAKAEKIASHMICEGR-MNG 352 (408)
Q Consensus 320 ~Itl~~La~lLgls~e~~E~~ls~mI~~gr-l~a 352 (408)
.+|..+||+.||+|..-+.+.+..|-..|. |.+
T Consensus 36 ~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 36 PVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 499999999999999999999999999998 764
No 379
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=23.72 E-value=82 Score=28.47 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhc----CceEEEeccCCcEEEecCCCchhhHHHH
Q psy7321 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICE----GRMNGYVDQIDSIVHFETREILPSWDKQ 375 (408)
Q Consensus 304 ~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~----grl~akIDqv~giV~F~~~~~l~~W~~~ 375 (408)
++++|--|.+..++ +++++|++.++++.++++..+..+..+ ++ -=.|=+++|-..|..+..+..|-..
T Consensus 17 ~~~iEAlLf~a~ep---vs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~r-Giel~~v~~gy~l~T~~e~~~~v~~ 88 (219)
T 2z99_A 17 KRVLEALLLVIDTP---VTADALAAATEQPVYRVAAKLQLMADELTGRDS-GIDLRHTSEGWRMYTRARFAPYVEK 88 (219)
T ss_dssp HHHHHHHHHHCSSC---BCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC-SEEEEEETTEEEEEECGGGHHHHHH
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCC-CEEEEEECCEEEEEEcHHHHHHHHH
Confidence 46788888777776 999999999999999999999988752 22 1244556666666655444444433
No 380
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=23.69 E-value=97 Score=24.97 Aligned_cols=34 Identities=3% Similarity=0.167 Sum_probs=31.0
Q ss_pred hccccCChHHHHHHhCCCHHHHHHHHHHHHhcCc
Q psy7321 316 KLYNNISFPELGALLQISAAKAEKIASHMICEGR 349 (408)
Q Consensus 316 k~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~gr 349 (408)
.+=.-.+++++|..-|++...++..+++++.+|.
T Consensus 28 l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 28 QIDRKVALDDIAVSHGLDFPELLSEVETIVYSGT 61 (122)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 3457889999999999999999999999999995
No 381
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=23.51 E-value=91 Score=26.76 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhccccCChHHHHHHhC--CCHHHHHHHHHHHHhc----CceEEEeccCCcEEEecCCCchhhHHHH
Q psy7321 304 RAVTEHNLLSASKLYNNISFPELGALLQ--ISAAKAEKIASHMICE----GRMNGYVDQIDSIVHFETREILPSWDKQ 375 (408)
Q Consensus 304 ~~ViEhNi~~isk~Ys~Itl~~La~lLg--ls~e~~E~~ls~mI~~----grl~akIDqv~giV~F~~~~~l~~W~~~ 375 (408)
++++|-=|.+..+| +++++|++.+| +++++++..+..+..+ |+ -=.|=+++|-..|..+..+..|-..
T Consensus 9 ~~~iEAlLf~~~~p---vs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~r-g~~l~~v~~gy~l~t~~~~~~~v~~ 82 (162)
T 1t6s_A 9 LRSLEALIFSSEEP---VNLQTLSQITAHKFTPSELQEAVDELNRDYEATGR-TFRIHAIAGGYRFLTEPEFADLVRQ 82 (162)
T ss_dssp HHHHHHHHHHCSSC---BCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTC-SEEEEEETTEEEEEECGGGHHHHHH
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCC-CEEEEEECCEEEEEEcHHHHHHHHH
Confidence 35677766666555 99999999999 9999999999888753 22 1144455666666555444444333
No 382
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=23.48 E-value=1.5e+02 Score=20.57 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=24.5
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHH
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMI 345 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI 345 (408)
+...+..++|+.+|+|+.-+...+.+..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5677999999999999999998888765
No 383
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=23.42 E-value=58 Score=27.47 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=24.7
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHH---HhcC
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHM---ICEG 348 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~m---I~~g 348 (408)
++-=|+++||+.+|++++.+...+.+. +..|
T Consensus 93 ~kadTleeLA~~~gid~~~L~~TV~~yN~~~~~G 126 (160)
T 2lfc_A 93 FVKGSLESAAEQAGIVVDELVQTVKNYQGYVQDG 126 (160)
T ss_dssp EECSSHHHHHHHHTCCHHHHHHHHHHHHHHHTTS
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 444589999999999999999888654 5554
No 384
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=23.13 E-value=1.7e+02 Score=23.03 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHh----hccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhh----cCChHHHHHHHHHhcc
Q psy7321 106 ASIRQHLALIYER----EENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLE----DEDPVQAEAFINRASL 175 (408)
Q Consensus 106 a~l~~~LA~~~e~----~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~----~~D~~~A~~~i~Ka~~ 175 (408)
......|+.+|.. .+|+.+|.+.+...- +. + -.+-+.....+|.. .+|+.+|..+..|+..
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~--g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GL--N------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cC--C------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 3445789999998 899999999988742 11 1 13556777888988 8999999999999875
No 385
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=22.85 E-value=1.3e+02 Score=23.89 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=36.5
Q ss_pred cccCChHHHHHHh--CCCHHHHHHHHHHHHhcCceEEEeccCCcEEEe
Q psy7321 318 YNNISFPELGALL--QISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363 (408)
Q Consensus 318 Ys~Itl~~La~lL--gls~e~~E~~ls~mI~~grl~akIDqv~giV~F 363 (408)
...+|..+||..+ |+|+..+-+.+.++...|-|... ..|+...
T Consensus 25 ~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~rg~Y~L 69 (111)
T 3b73_A 25 EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---ANGVYVI 69 (111)
T ss_dssp HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---STTCEEE
T ss_pred cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---CCceEEE
Confidence 3589999999999 99999999999999999999874 4554333
No 386
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.83 E-value=1.7e+02 Score=23.34 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=37.4
Q ss_pred ccccC-ChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 317 LYNNI-SFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 317 ~Ys~I-tl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
+=.++ |...||+.||+|..-+-+-+..+..+|-|..+ +..|...-.
T Consensus 33 ~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred CCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 45677 58999999999999999999999999998664 445665544
No 387
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=22.76 E-value=1e+02 Score=24.80 Aligned_cols=46 Identities=9% Similarity=-0.022 Sum_probs=37.8
Q ss_pred ccccC-ChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 317 LYNNI-SFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 317 ~Ys~I-tl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
+=.++ +...||+.||+|..-+-+-+..+..+|.|.. -+..|+....
T Consensus 31 ~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 34678 9999999999999999999999999999865 3455765544
No 388
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.62 E-value=1.1e+02 Score=22.74 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=25.8
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
+...+.+++|+.||+|+.-+...+.+...
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67889999999999999999999888764
No 389
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.50 E-value=1.4e+02 Score=22.48 Aligned_cols=29 Identities=3% Similarity=0.194 Sum_probs=25.9
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHh
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMIC 346 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~ 346 (408)
+...|.+++|+.||+|+.-+...+.+...
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67789999999999999999999888764
No 390
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=22.40 E-value=2e+02 Score=27.13 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHhhcCcchHHHHHH---Hhchhhhhhhcchhh-hHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHH
Q psy7321 261 PAYSILEKMYLDRIIRKSELQDFAA---LLKPHQKAITVDGSS-ILERAVTEHNLLSASKLYNNISFPELGALLQISAAK 336 (408)
Q Consensus 261 p~~~~L~k~f~~~ii~~~~l~~F~~---~L~~h~~~~~~d~~~-~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~ 336 (408)
..|..+.+.|++ -++.|.. .++.+..+ .||.+ .|+......-+..+...|+.+.+. +.++
T Consensus 138 DvYa~IVk~YTd------yyQdfNe~LSKlSd~IsA--kDGN~IKFD~~sfk~~l~~l~~kY~~v~~P--------sd~e 201 (303)
T 3nft_A 138 DAYATIVEGLTK------YFQSVADVMSKLQDYISA--KDDKNMKIDGGKIKALIQQVIDHLPTMQLP--------KGAD 201 (303)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHGGGGEEE--ETTTEEEECHHHHHHHHHHHHHTCCEEECC--------TTCC
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHhhccc--cCCCeeeecHHHHHHHHHHHHHhcCCCCCC--------CHHH
Confidence 345555555533 1233433 34555555 77853 344444555555567788877775 4555
Q ss_pred HHHHHHHHHhcCceEEEeccCCcEEEecCC------------------CchhhHHHHHHHHHHHHHHHHHHHHhhCh
Q psy7321 337 AEKIASHMICEGRMNGYVDQIDSIVHFETR------------------EILPSWDKQIESLCYRIDHIMEQIETVQP 395 (408)
Q Consensus 337 ~E~~ls~mI~~grl~akIDqv~giV~F~~~------------------~~l~~W~~~I~~l~~~v~~v~~~i~~~~p 395 (408)
++.-..++ .+- -+.+.+|.|.|+-. ...+.|...+...=+.+++.+..+.+.+-
T Consensus 202 a~~W~k~L--g~~---f~V~~sG~I~~Dl~~i~~m~~sL~g~G~di~tAsYQAWqAgFdAqkn~vqSnvQtL~QKYS 273 (303)
T 3nft_A 202 IARWRKEL--GDA---VSISDSGVVTINPDKLIKMRDSLPPDGTVWDTARYQAWNTAFSGQKDNIQNDVQTLVEKYS 273 (303)
T ss_dssp HHHHHHHH--CTT---EEECTTCEEEECCHHHHHHHHTCCCTTEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCC---ceeCCCceEEeCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555555 222 22356888888732 24678999999888888888877776653
No 391
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=22.11 E-value=30 Score=26.40 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCceEEEec
Q psy7321 334 AAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 334 ~e~~E~~ls~mI~~grl~akID 355 (408)
.+.+|..+.+|...|+|.++||
T Consensus 34 A~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 34 AQAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp HHHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 4578999999999999999985
No 392
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=22.10 E-value=2.7e+02 Score=30.96 Aligned_cols=118 Identities=20% Similarity=0.156 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCccccccc--cCCc--------------hhHHHHHHHHHHHhhhcCChHHHHHHHHH
Q psy7321 109 RQHLALIYEREENWRDAANVLVGIPLETGQK--QYSV--------------DYKLQTYMKIARLYLEDEDPVQAEAFINR 172 (408)
Q Consensus 109 ~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~--~~~~--------------~~Kle~~L~i~RL~L~~~D~~~A~~~i~K 172 (408)
+..+|..|...|++++|+..++..-..-+.. .... .-...+|+.+++++=..+-+..+-.+...
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4778999999999999999998743211000 0000 11246899999999888888888777766
Q ss_pred hccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q psy7321 173 ASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSAL 232 (408)
Q Consensus 173 a~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av 232 (408)
|-... ..++++++..++...-+.+..-++|-+|+.......+. +-+..+|+..|
T Consensus 925 Ai~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-----~~r~~cLr~LV 978 (1139)
T 4fhn_B 925 ADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-----PLKKSCLLDFV 978 (1139)
T ss_dssp HHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-----SSCHHHHHHHH
T ss_pred HHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-----HHHHHHHHHHH
Confidence 64322 23566665544444444455556777776555444322 12455666544
No 393
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B*
Probab=21.38 E-value=94 Score=24.79 Aligned_cols=51 Identities=8% Similarity=0.216 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccc
Q psy7321 2 DISTLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENV 59 (408)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v 59 (408)
|.+.|+++|.++...-+...+ +....|-+...+++++ +|-.+|++++.|--
T Consensus 39 Dma~vAQkLEqLE~vmg~a~~--dgls~LasDTVHyNPS-----DLs~WvesMLsEln 89 (110)
T 2zsh_B 39 EMADVAQKLEQLEVMMSNVQE--DDLSQLATETVHYNPA-----ELYTWLDSMLTDLN 89 (110)
T ss_dssp GHHHHHHHHHHHHHHHTTC---------CHHHHTTSCTT-----BHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHHHHHccccc--hhHHHhhhhhhcCChH-----HHHHHHHHHHHHcC
Confidence 457899999999887553211 2244556666676654 68889999997744
No 394
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=21.21 E-value=20 Score=31.09 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=0.0
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCch
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREIL 369 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l 369 (408)
--.+|-++||..+|++++.+-+.+.+|..+|-|. ...|.|...+++.|
T Consensus 162 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~----~~~~~i~I~d~~~L 209 (213)
T 1o5l_A 162 TLPVTLEELSRLFGCARPALSRVFQELEREGYIE----KHGRRIKVLKNPFE 209 (213)
T ss_dssp ----------------------------------------------------
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEE----EcCCEEEEechHHh
Confidence 3468899999999999999999999999998763 23344554444444
No 395
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=21.13 E-value=3e+02 Score=21.51 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=32.6
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEE
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGY 353 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~ak 353 (408)
..+++.+||+.+|+|...+-..+..|...|.+...
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 56899999999999999999999999999999774
No 396
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=20.31 E-value=1.7e+02 Score=24.29 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=33.9
Q ss_pred ccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEec
Q psy7321 319 NNISFPELGALLQISAAKAEKIASHMICEGRMNGYVD 355 (408)
Q Consensus 319 s~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akID 355 (408)
...++.+||+.||++...+=..+..|...|-|..+-|
T Consensus 70 ~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~ 106 (151)
T 3f6v_A 70 GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKD 106 (151)
T ss_dssp CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 5688999999999999999999999999999988754
No 397
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=20.19 E-value=1.4e+02 Score=24.10 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=37.1
Q ss_pred ccccC-ChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEe
Q psy7321 317 LYNNI-SFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363 (408)
Q Consensus 317 ~Ys~I-tl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F 363 (408)
+=.++ +...||+.||+|..-+-+-+..+..+|-+.. -+..|...-
T Consensus 24 ~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~ 69 (129)
T 2ek5_A 24 IDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVS 69 (129)
T ss_dssp TTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEEC
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEe
Confidence 45677 8999999999999999999999999999865 345565543
No 398
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=20.09 E-value=1.4e+02 Score=27.98 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=37.2
Q ss_pred ccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCC
Q psy7321 317 LYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQID 358 (408)
Q Consensus 317 ~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~ 358 (408)
+-..++.++||+.||+|...+-+.|..+-.+|.+.=+|.-+.
T Consensus 18 ~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~~ 59 (315)
T 2w48_A 18 YEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDY 59 (315)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCCc
Confidence 457899999999999999999999999999999987775543
No 399
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=20.01 E-value=1.3e+02 Score=26.57 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=37.0
Q ss_pred cccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEec
Q psy7321 318 YNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFE 364 (408)
Q Consensus 318 Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~ 364 (408)
-..++..+||+.||+++.-+=+.+.+|...|-+.-.=| +.|...
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~i~LT 61 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK---AGYLLT 61 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---TEEEEC
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC---CCeEEC
Confidence 45799999999999999999999999999998876533 555554
Done!