RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7321
(408 letters)
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Length = 84
Score = 98.3 bits (245), Expect = 1e-25
Identities = 59/75 (78%), Positives = 66/75 (88%)
Query: 293 AITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352
+ + GSSIL+RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG
Sbjct: 3 SGSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNG 62
Query: 353 YVDQIDSIVHFETRE 367
++DQID IVHFETRE
Sbjct: 63 FIDQIDGIVHFETRE 77
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 101 bits (252), Expect = 7e-24
Identities = 51/344 (14%), Positives = 119/344 (34%), Gaps = 17/344 (4%)
Query: 55 VNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLAL 114
+++ + + R ++ + + + ++ + +F Q R L
Sbjct: 52 ISKAKAAKLVRSLVDMFLD--MDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEAR--LIA 107
Query: 115 IYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRAS 174
+Y + +A + + E +K + ++ + ++ Y + +A A + A
Sbjct: 108 LYFDTALYTEALALGAQLLREL-KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166
Query: 175 LLQ-AETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALI 233
A +Q + + + + A Y ++ D + + AL +L
Sbjct: 167 TTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF-EGFDSVDSVKALT-SLK 224
Query: 234 CTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKA 293
+L +S + L + I + K L DF A LK ++K
Sbjct: 225 YMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKE 284
Query: 294 ITVDG-----SSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEG 348
+ D L + E NL + Y+ + + +Q+ + EK S MI +
Sbjct: 285 LAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDK 344
Query: 349 RMNGYVDQIDSIVHFETRE----ILPSWDKQIESLCYRIDHIME 388
+ +G +DQ + ++ + I+S+ +D + +
Sbjct: 345 KFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQ 388
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 1e-10
Identities = 70/368 (19%), Positives = 121/368 (32%), Gaps = 114/368 (30%)
Query: 26 KYRSILELILKN-QDTTTCTECLNLFVEAIVNENVS---LVISRQI-LTDV-----STHL 75
Y + L L+L N Q+ + N F N+S L+ +R +TD +TH+
Sbjct: 242 PYENCL-LVLLNVQNA----KAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 76 VSQ-------PDEV----AKPVSHFTLD------KVQPRVIS-FEEQVASIRQHLALIYE 117
PDEV K + D PR +S SIR LA
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII---AESIRDGLA---- 342
Query: 118 REENWR----DAANVLVGI------PLETGQKQY--------SVDYKLQTYMKIARLYLE 159
+NW+ D ++ P E +K + S + + +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMFDRLSVFPPSAHIPTIL-LSLIWFDVI 400
Query: 160 DEDPVQAEAFINRASLLQAETKDETLQVH-----YKVCYARVLDYRRKFIEAAQR----- 209
D + +++ SL++ + K+ T+ + KV R ++
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 210 -------------YSELSYK-PIIDEAERITA----------LKSALICTILASAGQQRS 245
YS + + I+ ER+T L+ + ++A
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD--STAWNASG 518
Query: 246 RMLATL-----FKDERCQHLPAYSILEKMYLDRIIRKSE---LQDFAALLKPHQKAITVD 297
+L TL +K C + P Y L LD + + E + LL + A+ +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL---RIALMAE 575
Query: 298 GSSILERA 305
+I E A
Sbjct: 576 DEAIFEEA 583
Score = 53.3 bits (127), Expect = 1e-07
Identities = 76/428 (17%), Positives = 139/428 (32%), Gaps = 123/428 (28%)
Query: 11 AALSSQAGSH----KDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISR- 65
+ LS + H KD + +L Q E + FVE ++ N ++S
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-----EEMVQKFVEEVLRINYKFLMSPI 98
Query: 66 ----QILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREEN 121
+ + ++ + Q D + F V R + +RQ L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SR----LQPYLKLRQAL-------LE 146
Query: 122 WRDAANVLV----GIPLETGQKQYSV-----DYKLQTYMKIARLYLEDEDPVQAEAFINR 172
R A NVL+ G G K + YK+Q M +L
Sbjct: 147 LRPAKNVLIDGVLGS----G-KTWVALDVCLSYKVQCKMDFKIFWL-------------- 187
Query: 173 ASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKS-- 230
+L + + L++ K+ Y ++ + + + +L I E R+ K
Sbjct: 188 -NLKNCNSPETVLEMLQKLLYQIDPNWTSR-SDHSSNI-KLRIHSIQAELRRLLKSKPYE 244
Query: 231 -ALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRII-RKSELQDFAALLK 288
L+ +L + Q ++ F + C+ IL + R ++ DF L
Sbjct: 245 NCLL--VLLNV--QNAKAWNA-F-NLSCK------IL-------LTTRFKQVTDF--LSA 283
Query: 289 PHQKAITVDGSSILERAVTEHNLLSASKLYNNISFPEL------GALLQISAAKAEKIAS 342
I++D +T + S Y + +L ++S
Sbjct: 284 ATTTHISLDH---HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--------- 331
Query: 343 HMICEGRMNGYVDQIDSIVHFETREILPSWD--KQIESLCYRIDHIMEQ-IETVQPEWLS 399
+I E R+ L +WD K + C ++ I+E + ++P
Sbjct: 332 -IIAE----------------SIRDGLATWDNWKHVN--CDKLTTIIESSLNVLEPA-EY 371
Query: 400 KKMADYLV 407
+KM D L
Sbjct: 372 RKMFDRLS 379
Score = 50.6 bits (120), Expect = 7e-07
Identities = 37/263 (14%), Positives = 85/263 (32%), Gaps = 69/263 (26%)
Query: 183 ETLQVHYKVCYARVL-DYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAG 241
ET + Y Y +L + F++ K + D + I L I I+ S
Sbjct: 10 ETGEHQY--QYKDILSVFEDAFVD------NFDCKDVQDMPKSI--LSKEEIDHIIMSKD 59
Query: 242 Q-QRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSS 300
+ L ++ E+M + + + ++ L+ P + S
Sbjct: 60 AVSGTLRLFWTLLSKQ----------EEMV-QKFVEEVLRINYKFLMSPIKTE-QRQPSM 107
Query: 301 ILERAVTEHNLLSASKLYN--------NISFPEL-----GALLQISAAK----------- 336
+ + + + +LYN N+S + ALL++ AK
Sbjct: 108 MTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 337 -----AEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIE 391
+ S+ + + +M+ + ++ +L + ++ L Y+ID
Sbjct: 163 KTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVL----EMLQKLLYQIDPNWTSRS 217
Query: 392 ------TVQPEWLSKKMADYLVN 408
++ + ++ L +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKS 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 1e-09
Identities = 70/415 (16%), Positives = 128/415 (30%), Gaps = 114/415 (27%)
Query: 4 STLKTQLAALSSQAGSHKDQADKYRSILELILK----------NQDTTTCTECLNL---- 49
S L+ Q + + D+ + EL+ K + LNL
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 50 FVEAIVNEN-V-SLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVA- 106
F + N + +L +L + T LV E+ K ++ T + R + A
Sbjct: 91 FENCYLEGNDIHALAAK--LLQENDTTLVKT-KELIK--NYITARIMAKRPFDKKSNSAL 145
Query: 107 --SIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDY--KLQTYMKIARLYLEDED 162
++ + A + + G GQ + DY +L+ LY
Sbjct: 146 FRAVGEGNAQLV-----------AIFG-----GQG-NTDDYFEELRD------LY--QTY 180
Query: 163 PVQAEAFINRAS-LLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQR--------YSEL 213
V I ++ L + + + + + L+ +++E +
Sbjct: 181 HVLVGDLIKFSAETLSELIRTT---LDAEKVFTQGLNI-LEWLENPSNTPDKDYLLSIPI 236
Query: 214 SYKPIIDEAERITALKS-ALICTILA-SAGQQRSRMLATLFKDERCQHLPAYSILEKMYL 271
S P+I + L + +L + G+ RS + Q L
Sbjct: 237 SC-PLIG----VIQLAHYVVTAKLLGFTPGELRSYLKGAT---GHSQGLVT--------- 279
Query: 272 DRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLL-----SASKLYNNISFPEL 326
A + A T S +L + Y N S P
Sbjct: 280 ------------AVAI-----AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP- 321
Query: 327 GALLQISAAKAEKIASHMI-CEGRMNGYVDQIDSIVHFETREILPSWDKQIE-SL 379
++L+ S E + S M+ + +Q+ V +T LP+ KQ+E SL
Sbjct: 322 -SILEDSLENNEGVPSPMLSISN-LT--QEQVQDYV-NKTNSHLPA-GKQVEISL 370
Score = 42.3 bits (99), Expect = 3e-04
Identities = 48/298 (16%), Positives = 93/298 (31%), Gaps = 88/298 (29%)
Query: 22 DQADKYR------SILELILKNQDTTTCTECLNLFVEA---IVNENVSLVISRQILTDVS 72
++AD + SIL++++ N T F + EN S + + + D
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTI-----HFGGEKGKRIRENYS-AMIFETIVDGK 1700
Query: 73 THLVSQPDEVAKPVSHFT-------LDK---VQPRVISFEEQVASIRQHLALIYE--REE 120
E+ + + +T L QP + E A +E + +
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME--KA--------AFEDLKSK 1750
Query: 121 NWRDAANVLVGIPL-ETGQKQYSVDYKLQTYMKIARL-----YLEDEDPVQAEAFINRAS 174
A G L E Y+ A L + E V+ F R
Sbjct: 1751 GLIPADATFAGHSLGE-----YA-----------A-LASLADVMSIESLVEV-VFY-RGM 1791
Query: 175 LLQ-AETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALI 233
+Q A +DE + +Y + F + A +Y +++ + ++ +
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-------VVERVGK----RTGWL 1840
Query: 234 CTILA---SAGQQ-----RSRMLATL---FKDERCQHLPAYSILEKMYLDRIIRKSEL 280
I QQ R L T+ + Q + + + + L+ + + L
Sbjct: 1841 VEI-VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV--EGHL 1895
Score = 38.9 bits (90), Expect = 0.004
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 42/126 (33%)
Query: 11 AALSSQAG--SHKDQAD--KYRSILELILKNQD------------------TTTCTECLN 48
AAL+S A S + + YR + + +D + E L
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 49 LFVEA----------IVNENVS---LVIS-----RQILTDVSTHLVSQPDEVAK-PVSHF 89
VE IVN NV V + +T+V + Q ++ + S
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS-L 1886
Query: 90 TLDKVQ 95
+L++V+
Sbjct: 1887 SLEEVE 1892
Score = 34.6 bits (79), Expect = 0.060
Identities = 54/312 (17%), Positives = 106/312 (33%), Gaps = 112/312 (35%)
Query: 156 LYLEDEDPVQAEAFINRA----------SLLQAETKD-ETLQVHYKVCYARVLDYRRKFI 204
LY + + NRA S+L + L +H+ + K I
Sbjct: 1635 LY--KTSKAAQDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFG-------GEKGKRI 1684
Query: 205 EAAQRYSELSYKPIID---EAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLP 261
+ YS + ++ I+D + E+I K + + ++ + AT F Q P
Sbjct: 1685 --RENYSAMIFETIVDGKLKTEKI--FKEINEHSTSYTFRSEKGLLSATQFT----Q--P 1734
Query: 262 A-----YSILEKMYLDRIIRKSE--LQDFAALLKPHQKAITVDGSSILERAVTEHNL--L 312
A + E + KS+ + A A G H+L
Sbjct: 1735 ALTLMEKAAFEDL-------KSKGLIPADATF------A----G----------HSLGEY 1767
Query: 313 SASKLY---NNISFPEL-------GALLQISAAKAEKIASH--M--ICEGRMNGYVDQ-- 356
+A L + +S L G +Q++ + E S+ M I GR+ Q
Sbjct: 1768 AA--LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 357 IDSIVHF---ETREIL-------PSWDKQI---------ESLCYRIDHIMEQ-IETVQ-P 395
+ +V T ++ ++Q +++ ++ I Q I+ ++
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVE--NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 396 EWLS-KKMADYL 406
+ LS +++ +L
Sbjct: 1884 KSLSLEEVEGHL 1895
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.3 bits (93), Expect = 2e-04
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 138 QKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASL 175
+KQ ++ KLQ +K LY +D P A I A++
Sbjct: 18 EKQ-ALK-KLQASLK---LYADDSAPALA---IK-ATM 46
Score = 28.4 bits (62), Expect = 2.5
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 8/27 (29%)
Query: 312 LSAS-KLYNNISFPELGALLQISAAKA 337
L AS KLY + S P AL A KA
Sbjct: 25 LQASLKLYADDSAP---AL----AIKA 44
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 33.3 bits (76), Expect = 0.074
Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 16/128 (12%)
Query: 258 QHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGS-SILERAVTEHNLL---- 312
+ L Y +++ + R + + L L H+ G ILE+ +
Sbjct: 73 ELLKKYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKL--KIITYRNLF 130
Query: 313 ---SASKLYNNISFPELGALLQ------ISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
+ +S L+ + + + I +++I G + GY+ +
Sbjct: 131 KKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVV 190
Query: 364 ETREILPS 371
+ P
Sbjct: 191 SKQNPFPP 198
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 32.2 bits (73), Expect = 0.29
Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 2/110 (1%)
Query: 103 EQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDED 162
+ A + E + A L + + + + K +RL + +
Sbjct: 113 DTAAMALDRAGKLMEPLDL--SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK 170
Query: 163 PVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSE 212
+A A + + + E ++ + V +R ++ A + E
Sbjct: 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 29.6 bits (66), Expect = 1.6
Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 23/148 (15%)
Query: 110 QHLALIYEREENWRDAANVLVGI---------------PLETGQKQYSVDYKL----QTY 150
A ++ N +A N V LE + ++ +
Sbjct: 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120
Query: 151 MKIARLYLED-EDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQR 209
++ + D D +A A A+ + L + A + ++IEA+
Sbjct: 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180
Query: 210 YSELSYKPIIDEAERITA---LKSALIC 234
YS+L + + + + +C
Sbjct: 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLC 208
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.3 bits (65), Expect = 2.0
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 29/106 (27%)
Query: 92 DKVQP--RVIS-FEEQVASI--RQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYK 146
KV P R++S E ++ L + YE P E + +
Sbjct: 139 AKVPPLIRIVSGLELSDTKQKGKKFLVIAYE---------------PFEN------IAIE 177
Query: 147 LQTYMKIARLY--LEDEDPVQAEAFINRASLLQAETKDETLQVHYK 190
L +I D + + + + A +K +Q +K
Sbjct: 178 LPP-NEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFK 222
Score = 28.2 bits (62), Expect = 5.0
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 27/119 (22%)
Query: 260 LPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHN----LLSAS 315
+I + Y + S D A + P + + S LE + T+ L+ A
Sbjct: 115 SVGMAI-QVNYSSEVKENSVDSDDKAKVPPLIRIV-----SGLELSDTKQKGKKFLVIAY 168
Query: 316 KLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDK 374
+ + NI+ ++ + I N + D + + WD
Sbjct: 169 EPFENIAI---------------ELPPNEILFSENNDMDNNNDGVDELNKK--CTFWDA 210
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 29.6 bits (66), Expect = 2.1
Identities = 10/108 (9%), Positives = 34/108 (31%), Gaps = 3/108 (2%)
Query: 105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPV 164
+++ + + ++ + AAN L + + + IAR + +
Sbjct: 214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL---QGQWRNIARAQILLGEFE 270
Query: 165 QAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSE 212
AE + + + + + ++ + +A + +
Sbjct: 271 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318
>3tzg_A Hypothetical protein BVU_2266; beta barrel, structural genomics,
joint center for structura genomics, JCSG, protein
structure initiative; 2.80A {Bacteroides vulgatus}
Length = 252
Score = 28.5 bits (63), Expect = 3.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 141 YSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLL 176
Y +++ L TY A L+DE+PV+ E N LL
Sbjct: 206 YCMNHGLSTYNVHANYRLDDENPVRIEVLYNYTKLL 241
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of
allergy AN infectious diseases; 2.20A {Hantaan virus}
Length = 113
Score = 26.6 bits (58), Expect = 6.9
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 52 EAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQH 111
I LVI+RQ + D PDE+ K TL + +S + ++ +++
Sbjct: 29 REINAHEGQLVIARQKVRDAEKQYEKDPDELNKR----TLTDREGVAVSIQAKIDELKRQ 84
Query: 112 LA 113
LA
Sbjct: 85 LA 86
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular
traffic, protein transport; 2.10A {Homo sapiens} SCOP:
a.222.1.1 PDB: 1txu_A
Length = 274
Score = 27.8 bits (61), Expect = 7.0
Identities = 11/62 (17%), Positives = 18/62 (29%)
Query: 74 HLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIP 133
E+ K F R +S EEQ + + ER + V
Sbjct: 25 TFHKTGQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKI 84
Query: 134 LE 135
++
Sbjct: 85 MD 86
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 27.5 bits (60), Expect = 8.4
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 105 VASIRQHLALIYEREENWRDAAN----VLVGIPLETGQKQYSVDYKLQTYMKIARLYLED 160
+ + + ++W A ++ YS++ ++K+ RLY+
Sbjct: 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV--YSLNVASM-WLKLGRLYMGL 395
Query: 161 EDPVQAEAFINRA 173
E+ E + +A
Sbjct: 396 ENKAAGEKALKKA 408
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.367
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,004,460
Number of extensions: 355311
Number of successful extensions: 860
Number of sequences better than 10.0: 1
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 41
Length of query: 408
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 312
Effective length of database: 4,021,377
Effective search space: 1254669624
Effective search space used: 1254669624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)