RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7321
         (408 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 86.4 bits (214), Expect = 1e-21
 Identities = 59/75 (78%), Positives = 66/75 (88%)

Query: 293 AITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352
           + +  GSSIL+RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG
Sbjct: 3   SGSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNG 62

Query: 353 YVDQIDSIVHFETRE 367
           ++DQID IVHFETRE
Sbjct: 63  FIDQIDGIVHFETRE 77


>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
           TCTP (histamine-releasing factor) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 172

 Score = 25.8 bits (57), Expect = 7.5
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 144 DYK--LQTYMKIARLYLEDEDPVQAEAFINRA 173
            YK  ++ YMK  +  LE++ P + + F+  A
Sbjct: 87  AYKKYIKDYMKSIKGKLEEQRPERVKPFMTGA 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,423,779
Number of extensions: 64491
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 8
Length of query: 408
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 321
Effective length of database: 1,213,086
Effective search space: 389400606
Effective search space used: 389400606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)