BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7322
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PI1|A Chain A, Crystal Structure Of A Human Mob1 Protein; Toward
Understanding Mob-Regulated Cell Cycle Pathways
Length = 185
Score = 353 bits (905), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 163/182 (89%), Positives = 173/182 (95%)
Query: 38 ATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYGTITEFCTEESCPIMSAGPKY 97
ATLGSGNLR AVMLP+GEDLNEW+AVNTVDFFNQINMLYGTITEFCTE SCP+MSAGP+Y
Sbjct: 3 ATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRY 62
Query: 98 EYHWADGHTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILK 157
EYHWADG +KKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNF+ +AKTILK
Sbjct: 63 EYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILK 122
Query: 158 RLFRVYAHIYHQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIERRELAPLQELIEKLTA 217
RLFRVYAHIYHQHF V+QL EEAHLNTSFKHFIFFVQEFNLI+RRELAPLQELIEKL +
Sbjct: 123 RLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGS 182
Query: 218 KD 219
KD
Sbjct: 183 KD 184
>pdb|1R3B|A Chain A, Solution Structure Of Xenopus Laevis Mob1
Length = 202
Score = 351 bits (901), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 162/188 (86%), Positives = 175/188 (93%)
Query: 32 LMKHAAATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYGTITEFCTEESCPIM 91
L+ +ATLGSGNLR AVMLP+GEDLNEW+AVNTVDFFNQINMLYGTITEFCTE +C +M
Sbjct: 14 LVPRGSATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTESTCSVM 73
Query: 92 SAGPKYEYHWADGHTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLLI 151
SAGP+YEYHWADG +KKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNF+ +
Sbjct: 74 SAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSV 133
Query: 152 AKTILKRLFRVYAHIYHQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIERRELAPLQEL 211
AKTILKRLFRVYAHIYHQHF V+QL EEAHLNTSFKHFIFFVQEFNLI+RRELAPLQEL
Sbjct: 134 AKTILKRLFRVYAHIYHQHFDAVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQEL 193
Query: 212 IEKLTAKD 219
IEKL +KD
Sbjct: 194 IEKLGSKD 201
>pdb|2HJN|A Chain A, Structural And Functional Analysis Of Saccharomyces
Cerevisiae Mob1
Length = 236
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 138/213 (64%), Gaps = 4/213 (1%)
Query: 8 FSGSRSSKTFKPKKNIPEGTHQYDLMKHAAATLGS-GNLRLAVMLPDGEDLNEWVAVNTV 66
++ S +P+ THQ D+ + TLGS G L AV LP GED NEW+AV+ V
Sbjct: 26 YTPSHQKPFLQPQAGTTVTTHQ-DIKQIVEXTLGSEGVLNQAVKLPRGEDENEWLAVHCV 84
Query: 67 DFFNQINMLYGTITEFCTEESCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYIDYLMTWV 126
DF+NQIN LYG+ITEFC+ ++CP A +YEY WA + P+ SAPKY++ L W
Sbjct: 85 DFYNQINXLYGSITEFCSPQTCPRXIATNEYEYLWA-FQKGQPPVSVSAPKYVECLXRWC 143
Query: 127 QDQLDDETLFPSKIGVPFPKNFL-LIAKTILKRLFRVYAHIYHQHFSEVVQLGEEAHLNT 185
QDQ DDE+LFPSK+ FP+ F+ + + IL+RLFRVYAHIY HF+E+++L + LNT
Sbjct: 144 QDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNT 203
Query: 186 SFKHFIFFVQEFNLIERRELAPLQELIEKLTAK 218
SF+HF F QEF L+ + PL EL+ +L +
Sbjct: 204 SFRHFCLFAQEFELLRPADFGPLLELVXELRDR 236
>pdb|2YHW|A Chain A, High-Resolution Crystal Structures Of
N-Acetylmannosamine Kinase: Insights About Substrate
Specificity, Activity And Inhibitor Modelling
Length = 343
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 23 IPEGTHQYDL-----MKHAAATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYG 77
+P G+H +L + A LG NLR+A++ GE + ++ N + +IN++
Sbjct: 15 VPRGSHMENLYFQGTLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQ 74
Query: 78 TITEFCTEE---SCPIMSAG 94
E E +C I+ G
Sbjct: 75 MCVEAAAEAVKLNCRILGVG 94
>pdb|2YHY|A Chain A, Structure Of N-Acetylmannosamine Kinase In Complex With
N- Acetylmannosamine And Adp
pdb|2YI1|A Chain A, Crystal Structure Of N-Acetylmannosamine Kinase In
Complex With N-Acetyl Mannosamine 6-Phosphate And Adp
Length = 343
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 23 IPEGTHQYDL-----MKHAAATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYG 77
+P G+H +L + A LG NLR+A++ GE + ++ N + +IN++
Sbjct: 15 VPRGSHMENLYFQGTLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQ 74
Query: 78 TITEFCTEE---SCPIMSAG 94
E E +C I+ G
Sbjct: 75 MCVEAAAEAVKLNCRILGVG 94
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 22/156 (14%)
Query: 69 FNQINMLYGTITEFCTEE-SCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYID----YLM 123
FNQ+ ++G C + S P + A P + + + I+C P ID + M
Sbjct: 260 FNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRM 319
Query: 124 T--------WVQDQLDDETLFPS------KIGVPFPKNFLLIAKTILKRLFRVYAHIY-- 167
T + + L T FP+ K+ P + + + T + +V H +
Sbjct: 320 TRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 379
Query: 168 -HQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIER 202
E Q G ++ SF + FF+++ + +E+
Sbjct: 380 GRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQ 415
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 22/156 (14%)
Query: 69 FNQINMLYGTITEFCTEE-SCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYID----YLM 123
FNQ+ ++G C + S P + A P + + + I+C P ID + M
Sbjct: 179 FNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRM 238
Query: 124 T--------WVQDQLDDETLFP------SKIGVPFPKNFLLIAKTILKRLFRVYAHIY-- 167
T + + L T FP +K+ P + + + T + +V H +
Sbjct: 239 TRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 298
Query: 168 -HQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIER 202
E Q G ++ SF + FF+++ + +E+
Sbjct: 299 GRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQ 334
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 22/156 (14%)
Query: 69 FNQINMLYGTITEFCTEE-SCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYID----YLM 123
FNQ+ ++G C + S P + A P + + + I+C P ID + M
Sbjct: 167 FNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRM 226
Query: 124 T--------WVQDQLDDETLFP------SKIGVPFPKNFLLIAKTILKRLFRVYAHIY-- 167
T + + L T FP +K+ P + + + T + +V H +
Sbjct: 227 TRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 286
Query: 168 -HQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIER 202
E Q G ++ SF + FF+++ + +E+
Sbjct: 287 GRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQ 322
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 22/156 (14%)
Query: 69 FNQINMLYGTITEFCTEE-SCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYID----YLM 123
FNQ+ ++G C + S P + A P + + + I+C P ID + M
Sbjct: 167 FNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRM 226
Query: 124 T--------WVQDQLDDETLFP------SKIGVPFPKNFLLIAKTILKRLFRVYAHIY-- 167
T + + L T FP +K+ P + + + T + +V H +
Sbjct: 227 TRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 286
Query: 168 -HQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIER 202
E Q G ++ SF + FF+++ + +E+
Sbjct: 287 GRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQ 322
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 22/156 (14%)
Query: 69 FNQINMLYGTITEFCTEE-SCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYID----YLM 123
FNQ+ ++G C + S P + A P + + + I+C P ID + M
Sbjct: 167 FNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRM 226
Query: 124 T--------WVQDQLDDETLFP------SKIGVPFPKNFLLIAKTILKRLFRVYAHIY-- 167
T + + L T FP +K+ P + + + T + +V H +
Sbjct: 227 TRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 286
Query: 168 -HQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIER 202
E Q G ++ SF + FF+++ + +E+
Sbjct: 287 GRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQ 322
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Query: 69 FNQINMLYGTITEFCTEE-SCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYIDY------ 121
FNQ+ ++G C + S P + A P + + + I+C P ID
Sbjct: 260 FNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRX 319
Query: 122 ------LMTWVQDQLDDETLFPS------KIGVPFPKNFLLIAKTILKRLFRVYAHIY-- 167
+ + + L T FP+ K P + + + T + +V H +
Sbjct: 320 TRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSG 379
Query: 168 -HQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIER 202
E Q G ++ SF + FF+++ + +E+
Sbjct: 380 GRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQ 415
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Query: 69 FNQINMLYGTITEFCTEE-SCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYIDY------ 121
FNQ+ ++G C + S P + A P + + + I+C P ID
Sbjct: 260 FNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRX 319
Query: 122 ------LMTWVQDQLDDETLFPS------KIGVPFPKNFLLIAKTILKRLFRVYAHIY-- 167
+ + + L T FP+ K P + + + T + +V H +
Sbjct: 320 TRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSG 379
Query: 168 -HQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIER 202
E Q G ++ SF + FF+++ + +E+
Sbjct: 380 GRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQ 415
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Query: 69 FNQINMLYGTITEFCTEE-SCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYIDY------ 121
FNQ+ ++G C + S P + A P + + + I+C P ID
Sbjct: 213 FNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRX 272
Query: 122 ------LMTWVQDQLDDETLFPS------KIGVPFPKNFLLIAKTILKRLFRVYAHIY-- 167
+ + + L T FP+ K P + + + T + +V H +
Sbjct: 273 TRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSG 332
Query: 168 -HQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIER 202
E Q G ++ SF + FF+++ + +E+
Sbjct: 333 GRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQ 368
>pdb|3EO3|A Chain A, Crystal Structure Of The N-Acetylmannosamine Kinase
Domain Of Human Gne Protein
pdb|3EO3|B Chain B, Crystal Structure Of The N-Acetylmannosamine Kinase
Domain Of Human Gne Protein
pdb|3EO3|C Chain C, Crystal Structure Of The N-Acetylmannosamine Kinase
Domain Of Human Gne Protein
Length = 333
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 37 AATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYGTITEFCTEE---SCPIMSA 93
A LG NLR+A++ GE + ++ N + +IN++ E E +C I+
Sbjct: 24 AVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQMCVEAAAEAVKLNCRILGV 83
Query: 94 G 94
G
Sbjct: 84 G 84
>pdb|3LMI|A Chain A, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|B Chain B, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|C Chain C, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|D Chain D, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
Length = 307
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 101 WADGHTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPF 144
W + KKP PK I++LM+WV + +D PS G P
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPI 174
>pdb|3LMH|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
pdb|3LMH|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
Length = 307
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 101 WADGHTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPF 144
W + KKP PK I++LM+WV + +D PS G P
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPI 174
>pdb|3PDT|A Chain A, Crystal Structure Of The C-Terminal Truncated Alpha-Kinase
Domain Of Myosin Heavy Chain Kinase
Length = 275
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 101 WADGHTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPF 144
W + KKP PK I++LM+WV + +D PS G P
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPI 174
>pdb|3LKM|A Chain A, 1.6 Angstrom Crystal Structure Of The Alpha-Kinase Domain
Of Myosin Heavy Chain Kinase A Complex With Amp
pdb|3LLA|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
pdb|3LLA|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
Length = 307
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 101 WADGHTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPF 144
W + KKP PK I++LM+WV + +D PS G P
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPI 174
>pdb|2NT8|A Chain A, Atp Bound At The Active Site Of A Pduo Type
Atp:co(i)rrinoid Adenosyltransferase From Lactobacillus
Reuteri
Length = 223
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 124 TWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILKRLFRVYAHIYHQHFSEVVQLGEEAHL 183
W+++++D+ T VP K F+L T L V I + ++VQL E +
Sbjct: 128 VWLEEKIDNYTQV-----VPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQI 182
Query: 184 NTSFKHFIFFVQEF 197
N FI + ++
Sbjct: 183 NQDVLIFINRLSDY 196
>pdb|3GAJ|A Chain A, Structure Of A C-Terminal Deletion Variant Of A Pduo-Type
Atp:corrinoid Adenosyltransferase From Lactobacillus
Reuteri Complexed With Cobalamin And Atp
Length = 187
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 124 TWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILKRLFRVYAHIYHQHFSEVVQLGEEAHL 183
W+++++D+ T VP K F+L T L V I + ++VQL E +
Sbjct: 99 VWLEEKIDNYTQV-----VPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQI 153
Query: 184 NTSFKHFI 191
N FI
Sbjct: 154 NQDVLIFI 161
>pdb|2R6X|A Chain A, Structure Of A D35n Variant Pduo-type Atp:co(i)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Atp
pdb|2R6X|B Chain B, Structure Of A D35n Variant Pduo-type Atp:co(i)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Atp
Length = 194
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 124 TWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILKRLFRVYAHIYHQHFSEVVQLGEEAHL 183
W+++++D+ T VP K F+L T L V I + ++VQL E +
Sbjct: 99 VWLEEKIDNYTQV-----VPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQI 153
Query: 184 NTSFKHFI 191
N FI
Sbjct: 154 NQDVLIFI 161
>pdb|3CI1|A Chain A, Structure Of The Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Four-Coordinate Cob(Ii)alamin And Atp
pdb|3CI3|A Chain A, Structure Of The Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Partial Adenosylcobalamin And Pppi
pdb|3CI4|A Chain A, Structure Of The Pduo-Type Atp:co(I)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Four-Coordinate Cob(Ii)inamide And Atp
Length = 194
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 124 TWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILKRLFRVYAHIYHQHFSEVVQLGEEAHL 183
W+++++D+ T VP K F+L T L V I + ++VQL E +
Sbjct: 99 VWLEEKIDNYTQV-----VPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQI 153
Query: 184 NTSFKHFI 191
N FI
Sbjct: 154 NQDVLIFI 161
>pdb|1I1G|A Chain A, Crystal Structure Of The Lrp-Like Transcriptional
Regulator From The Archaeon Pyrococcus Furiosus
pdb|1I1G|B Chain B, Crystal Structure Of The Lrp-Like Transcriptional
Regulator From The Archaeon Pyrococcus Furiosus
Length = 141
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 18 KPKK--NIPEGTHQYDLMKHAAATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINML 75
KP+K + E +YD +K + G + + DGEDL E ++ N+I +
Sbjct: 73 KPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIIS-------NKIGKI 125
Query: 76 YGTITEFC 83
G +T+ C
Sbjct: 126 EG-VTKVC 132
>pdb|1U0E|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase
pdb|1U0E|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase
pdb|1U0F|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Glucose 6-Phosphate
pdb|1U0F|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Glucose 6-Phosphate
pdb|1U0G|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Erythrose 4-Phosphate
pdb|1U0G|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Erythrose 4-Phosphate
Length = 564
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 100 HWADGHTVKKPIKCSAPKYIDYLMTW 125
HW D H +K P++ +AP + L W
Sbjct: 301 HWMDQHFLKTPLEKNAPVLLALLGIW 326
>pdb|2CVP|A Chain A, Crystal Structure Of Mouse Amf
pdb|2CVP|B Chain B, Crystal Structure Of Mouse Amf
pdb|2CXN|A Chain A, Crystal Structure Of Mouse Amf PHOSPHATE COMPLEX
pdb|2CXN|B Chain B, Crystal Structure Of Mouse Amf PHOSPHATE COMPLEX
pdb|2CXO|A Chain A, Crystal Structure Of Mouse Amf E4P COMPLEX
pdb|2CXO|B Chain B, Crystal Structure Of Mouse Amf E4P COMPLEX
pdb|2CXP|A Chain A, Crystal Structure Of Mouse Amf / A5p Complex
pdb|2CXP|B Chain B, Crystal Structure Of Mouse Amf / A5p Complex
pdb|2CXQ|A Chain A, Crystal Structure Of Mouse Amf S6P COMPLEX
pdb|2CXQ|B Chain B, Crystal Structure Of Mouse Amf S6P COMPLEX
pdb|2CXR|A Chain A, Crystal Structure Of Mouse Amf 6PG COMPLEX
pdb|2CXR|B Chain B, Crystal Structure Of Mouse Amf 6PG COMPLEX
pdb|2CXS|A Chain A, Crystal Structure Of Mouse Amf / F6p Complex
pdb|2CXS|B Chain B, Crystal Structure Of Mouse Amf / F6p Complex
pdb|2CXT|A Chain A, Crystal Structure Of Mouse Amf F6P COMPLEX
pdb|2CXT|B Chain B, Crystal Structure Of Mouse Amf F6P COMPLEX
pdb|2CXU|A Chain A, Crystal Structure Of Mouse Amf / M6p Complex
pdb|2CXU|B Chain B, Crystal Structure Of Mouse Amf / M6p Complex
Length = 557
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 100 HWADGHTVKKPIKCSAPKYIDYLMTW 125
HW D H +K P++ +AP + L W
Sbjct: 301 HWMDQHFLKTPLEKNAPVLLALLGIW 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,927,803
Number of Sequences: 62578
Number of extensions: 287995
Number of successful extensions: 709
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 27
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)