Query psy7322
Match_columns 221
No_of_seqs 108 out of 417
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 23:51:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjn_A MPS1 binder 1, maintena 100.0 1.2E-82 4E-87 554.5 21.3 205 12-217 29-235 (236)
2 1pi1_A MOB1A; mitotic EXIT net 100.0 1.2E-81 4.2E-86 531.7 18.9 182 37-218 2-183 (185)
3 1ae9_A Lambda integrase; DNA r 38.2 38 0.0013 25.4 4.4 31 128-161 88-118 (179)
4 3c9q_A Uncharacterized protein 20.3 2.8 9.7E-05 35.4 -5.4 40 109-171 102-142 (205)
5 3ee1_A Effector protein VIRA; 20.0 46 0.0016 28.9 2.0 38 111-149 147-184 (400)
6 2kwv_A RAD30 homolog B, DNA po 15.8 47 0.0016 21.6 0.8 17 44-60 5-21 (48)
7 3nkh_A Integrase; alpha-fold, 15.3 2E+02 0.007 22.4 4.8 27 130-156 148-175 (244)
8 1z19_A Integrase; protein-DNA 15.0 1.4E+02 0.0047 23.6 3.7 30 128-160 191-220 (283)
9 1xg8_A Hypothetical protein SA 13.0 1.4E+02 0.0047 22.6 2.9 63 46-138 20-82 (111)
10 3g46_A Globin-1; oxygen transp 11.8 3.7E+02 0.013 19.9 5.2 26 147-172 28-55 (146)
No 1
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-82 Score=554.47 Aligned_cols=205 Identities=50% Similarity=0.877 Sum_probs=184.8
Q ss_pred CCCCCCCCCCCCCCCCcccchHHHHHHHcCCC-chhhhhcCCCCCCchhHHHHHHHHHHhhhhhhHhhhcccCCCCCCCC
Q psy7322 12 RSSKTFKPKKNIPEGTHQYDLMKHAAATLGSG-NLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYGTITEFCTEESCPI 90 (221)
Q Consensus 12 ~~~~t~~p~~~~~~~~~~~~l~~~~~~~l~~~-~l~~~V~lP~g~d~neWla~~~~~f~~~in~l~~~l~e~CT~~tCP~ 90 (221)
+.++++...+..++|+++|+++++++++|++| |++++|++|+|+|+|||||+|++||||+||++||+++|+||++|||+
T Consensus 29 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~l~~g~~l~~~V~lP~g~D~neWlA~h~~dFfn~in~lyg~ise~CT~~tCP~ 108 (236)
T 2hjn_A 29 SHQKPFLQPQAGTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCPR 108 (236)
T ss_dssp CCCCCCC------------CHHHHHHHHHHGGGC---CCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTTCSS
T ss_pred CCCCCCCCcCCCCCCccHHHHHHHHHHHhcCCcCHHHHhcCcCCCchhhHHHHHHHHHHHHHHHHHHHHHcccCcccCCC
Confidence 45667744456789999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEecCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchH-HHHHHHHHHHHHHHHHHhhh
Q psy7322 91 MSAGPKYEYHWADGHTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFL-LIAKTILKRLFRVYAHIYHQ 169 (221)
Q Consensus 91 MsAg~~~~YlW~d~~~~~kp~~~~A~~Yi~~~~~w~~~~l~de~iFPt~~g~~fP~~F~-~~v~~I~rrLfRVyAHiY~~ 169 (221)
|+||++|+|+|+|+++ ++|++|||||||+++|+||+++|+|+++|||+.|++||++|+ ++|++|||||||||||||++
T Consensus 109 MsAg~~~~YlW~d~~~-kkp~~~~A~~Yi~~lm~wi~~~l~de~iFPs~~~~~FP~~F~~~~v~~I~RRLfRVyAHiY~~ 187 (236)
T 2hjn_A 109 MIATNEYEYLWAFQKG-QPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCH 187 (236)
T ss_dssp CBSSTTEEECBCSSTT-SCCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTCCCCTTHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCeeEEeccCCC-CCCeeeCHHHHHHHHHHHHHHhccCCccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 799999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHhchhhHHHHHHHHHHHHHHHhcCCCcccccchHHHHHHHhc
Q psy7322 170 HFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIERRELAPLQELIEKLTA 217 (221)
Q Consensus 170 H~~~~~~l~~e~hlNt~FkHF~~F~~ef~Li~~kel~pl~~li~~l~~ 217 (221)
||+.|.++|+|+|||+|||||++|++||+||+++|++||++||+.|++
T Consensus 188 Hf~~~~~l~~e~hLNt~FkHF~~F~~ef~Li~~kel~PL~~li~~l~~ 235 (236)
T 2hjn_A 188 HFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRD 235 (236)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSCGGGGGGGHHHHHHHCC
T ss_pred HHHHHHHcccchhhhhhHHHHHHHHHHhcCCCHHHhhhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999975
No 2
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=100.00 E-value=1.2e-81 Score=531.71 Aligned_cols=182 Identities=89% Similarity=1.446 Sum_probs=178.5
Q ss_pred HHHcCCCchhhhhcCCCCCCchhHHHHHHHHHHhhhhhhHhhhcccCCCCCCCCcCCCCCceEEEecCCCCCCCcccChH
Q psy7322 37 AATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYGTITEFCTEESCPIMSAGPKYEYHWADGHTVKKPIKCSAP 116 (221)
Q Consensus 37 ~~~l~~~~l~~~V~lP~g~d~neWla~~~~~f~~~in~l~~~l~e~CT~~tCP~MsAg~~~~YlW~d~~~~~kp~~~~A~ 116 (221)
+++|++||++++|++|+|+|+|||||+|++||||+||++||+++|+||++|||+|+||++|+|+|+|++++++|++||||
T Consensus 2 ~~~l~~g~l~~~v~lP~g~d~~eWla~~~~df~~~in~ly~~i~e~Ct~~tCP~MsAg~~~~Ylw~d~~~~kkp~~~~A~ 81 (185)
T 1pi1_A 2 EATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAP 81 (185)
T ss_dssp CCCTTCCCHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTTCSSEESSTTCEECBCCSSSCCSCBCCCHH
T ss_pred ccchhcCcHHHHhcCcCCCchhhhHHHHHHHHHHHHHHHHHHHhcccCcccCccccCCCCeEEEEecCCCCCCCcccCHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999877899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHhchhhHHHHHHHHHHHHHHH
Q psy7322 117 KYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILKRLFRVYAHIYHQHFSEVVQLGEEAHLNTSFKHFIFFVQE 196 (221)
Q Consensus 117 ~Yi~~~~~w~~~~l~de~iFPt~~g~~fP~~F~~~v~~I~rrLfRVyAHiY~~H~~~~~~l~~e~hlNt~FkHF~~F~~e 196 (221)
|||+++|+|++++|+|+++|||+.|++||++|+++|++|||||||||||||+|||+.|.++|+|+|||+|||||++|+++
T Consensus 82 ~Yi~~~m~wi~~~l~d~~iFPs~~~~~fp~~f~~~~~~I~rRLfRVyaHiY~~Hf~~~~~l~~e~hlNt~f~hF~~F~~e 161 (185)
T 1pi1_A 82 KYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQE 161 (185)
T ss_dssp HHHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcceehhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccccchHHHHHHHhcc
Q psy7322 197 FNLIERRELAPLQELIEKLTAK 218 (221)
Q Consensus 197 f~Li~~kel~pl~~li~~l~~~ 218 (221)
|+||+++|++||++||+.|+++
T Consensus 162 f~Li~~kel~Pl~~li~~~~~~ 183 (185)
T 1pi1_A 162 FNLIDRRELAPLQELIEKLGSK 183 (185)
T ss_dssp HTCSCGGGGGGGHHHHHHSSCC
T ss_pred hCCCCHHHHHhHHHHHHHHhcc
Confidence 9999999999999999999873
No 3
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=38.21 E-value=38 Score=25.37 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=19.6
Q ss_pred HhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q psy7322 128 DQLDDETLFPSKIGVPFPKNFLLIAKTILKRLFR 161 (221)
Q Consensus 128 ~~l~de~iFPt~~g~~fP~~F~~~v~~I~rrLfR 161 (221)
..-.++-+||+..|.++..+ .+.++++++.+
T Consensus 88 ~~~~~~~lF~~~~g~~~~~~---~~~~~~~~~~~ 118 (179)
T 1ae9_A 88 EILGGETIIASTRREPLSSG---TVSRYFMRARK 118 (179)
T ss_dssp HHTCCSBSSCCTTSCCCCHH---HHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCcCChh---HHHHHHHHHHH
Confidence 34568899999988776543 34444554443
No 4
>3c9q_A Uncharacterized protein C8ORF32; medically relevant, putative involvement in human inherited and disorders of purkinje cell degeneration; HET: MSE; 1.50A {Homo sapiens}
Probab=20.35 E-value=2.8 Score=35.39 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=26.2
Q ss_pred CCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHH-HHHhhhhh
Q psy7322 109 KPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILKRLFRVY-AHIYHQHF 171 (221)
Q Consensus 109 kp~~~~A~~Yi~~~~~w~~~~l~de~iFPt~~g~~fP~~F~~~v~~I~rrLfRVy-AHiY~~H~ 171 (221)
=|-.|++.+|++.+ |++++. +..-|||+|||. |..|-.||
T Consensus 102 LpfP~~~~~Y~~~t---------------------f~~~~~--l~~~~~r~FRVIpa~~yL~~F 142 (205)
T 3c9q_A 102 LPFPCLFDTYVEDA---------------------IKSDDD--IHPQFRRKFRVICADSYLKNF 142 (205)
T ss_dssp SCSSEEHHHHHHHT---------------------TCCSTT--SCGGGCCEEEEEEHHHHHHHC
T ss_pred CCCCcCHHHHHHHh---------------------cCcccc--cChhhceeEEEEeHHHHHHhh
Confidence 46788999998865 222221 234567889986 77777776
No 5
>3ee1_A Effector protein VIRA; beta barrels, six-stranded beta barrel, hydrolase, protease, secreted, thiol protease, virulence; 3.01A {Shigella flexneri}
Probab=20.04 E-value=46 Score=28.88 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=30.7
Q ss_pred cccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchH
Q psy7322 111 IKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFL 149 (221)
Q Consensus 111 ~~~~A~~Yi~~~~~w~~~~l~de~iFPt~~g~~fP~~F~ 149 (221)
+--|||+-|+..+.-+.+.+-+...||.+.. .|..-+-
T Consensus 147 thkpapevietaincctsiipnddyfpvkdt-dfnsvwh 184 (400)
T 3ee1_A 147 THKPAPEVIETAINCCTSIIPNDDYFPVKDT-DFNSVWH 184 (400)
T ss_dssp CSSCCHHHHHHHHHSCEEECCCCSBCCCCTT-TTTTHHH
T ss_pred cCCCCHHHHHHHHhhhccccCCCCccccccC-chhhHHH
Confidence 4568999999999999999999999999853 3554443
No 6
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=15.75 E-value=47 Score=21.59 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=12.3
Q ss_pred chhhhhcCCCCCCchhH
Q psy7322 44 NLRLAVMLPDGEDLNEW 60 (221)
Q Consensus 44 ~l~~~V~lP~g~d~neW 60 (221)
|...+..||+|||..+.
T Consensus 5 ~~~p~~~lP~~VD~eVF 21 (48)
T 2kwv_A 5 SDLPLQALPEGVDQEVF 21 (48)
T ss_dssp --CCTTSSCTTCCGGGT
T ss_pred ccCccccCCCCCCHHHH
Confidence 55667799999998764
No 7
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=15.29 E-value=2e+02 Score=22.38 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=17.4
Q ss_pred hCCCCCCCCCCCCCCCcc-hHHHHHHHH
Q psy7322 130 LDDETLFPSKIGVPFPKN-FLLIAKTIL 156 (221)
Q Consensus 130 l~de~iFPt~~g~~fP~~-F~~~v~~I~ 156 (221)
-++.-+||+..|.++..+ +...++.++
T Consensus 148 ~~~~~lF~~~~g~~~~~~~~~~~~~~~~ 175 (244)
T 3nkh_A 148 LNRNFVFTNHKGNPMQTERFNKILREAA 175 (244)
T ss_dssp CCCSBSSBCTTSSBCCHHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCCchhhHHHHHHHHH
Confidence 478899999998776543 333344433
No 8
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=15.03 E-value=1.4e+02 Score=23.56 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=18.8
Q ss_pred HhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHH
Q psy7322 128 DQLDDETLFPSKIGVPFPKNFLLIAKTILKRLF 160 (221)
Q Consensus 128 ~~l~de~iFPt~~g~~fP~~F~~~v~~I~rrLf 160 (221)
..-.++-+||+..|.++..+ .+.+.++++.
T Consensus 191 ~~~~~~~lF~~~~g~~~~~~---~~~~~~~~~~ 220 (283)
T 1z19_A 191 EILGGETIIASTRREPLSSG---TVSRYFMRAR 220 (283)
T ss_dssp HHHCSSBSSCCTTSSCCCHH---HHHHHHHHHH
T ss_pred HhCCCCceEeCCCCCcCChh---hHHHHHHHHH
Confidence 34468899999888766433 3444444443
No 9
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=12.99 E-value=1.4e+02 Score=22.64 Aligned_cols=63 Identities=17% Similarity=0.342 Sum_probs=43.9
Q ss_pred hhhhcCCCCCCchhHHHHHHHHHHhhhhhhHhhhcccCCCCCCCCcCCCCCceEEEecCCCCCCCcccChHHHHHHHHHH
Q psy7322 46 RLAVMLPDGEDLNEWVAVNTVDFFNQINMLYGTITEFCTEESCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYIDYLMTW 125 (221)
Q Consensus 46 ~~~V~lP~g~d~neWla~~~~~f~~~in~l~~~l~e~CT~~tCP~MsAg~~~~YlW~d~~~~~kp~~~~A~~Yi~~~~~w 125 (221)
...|.+|..-|..|||-.-+..=|- ...++|..+|=. +.+..++ ++-..|
T Consensus 20 ASCVnaPSSkeTyEWLqAal~RKyp-----------------------~~~f~~~YIDI~--~~~~~l~-----d~~~~~ 69 (111)
T 1xg8_A 20 ASCVNAPTSKDIYDWLQPLLKRKYP-----------------------NISFKYTYIDIT--KDNDNLT-----DHDLQF 69 (111)
T ss_dssp GGGSSSCCHHHHHHHHHHHHHHHCT-----------------------TSCEEEEEEETT--TC---CC-----HHHHHH
T ss_pred hhccCCCCchhHHHHHHHHHhCcCC-----------------------CCceEEEEEecc--CCccchh-----HHHHHH
Confidence 5678899999999999766654432 124778888843 2445443 456789
Q ss_pred HHHhhCCCCCCCC
Q psy7322 126 VQDQLDDETLFPS 138 (221)
Q Consensus 126 ~~~~l~de~iFPt 138 (221)
++..++|+-++|-
T Consensus 70 ae~I~ede~FYPl 82 (111)
T 1xg8_A 70 IERIEQDELFYPL 82 (111)
T ss_dssp HHHHHTTSSCSSE
T ss_pred HHHHhhccccceE
Confidence 9999999999995
No 10
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=11.77 E-value=3.7e+02 Score=19.87 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHHH--hhhhhH
Q psy7322 147 NFLLIAKTILKRLFRVYAHI--YHQHFS 172 (221)
Q Consensus 147 ~F~~~v~~I~rrLfRVyAHi--Y~~H~~ 172 (221)
+-...-..+|.|||..|=-+ |+.|+.
T Consensus 28 ~~~~~g~~~~~rlF~~~P~~k~~F~~~~ 55 (146)
T 3g46_A 28 DKKGNGVALMTTLFADNQETIGYFKRLG 55 (146)
T ss_dssp GHHHHHHHHHHHHHHHCGGGGGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHHc
Confidence 34456667788888877543 666653
Done!