RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7322
(221 letters)
>gnl|CDD|202711 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is an essential
Saccharomyces cerevisiae protein, identified from a
two-hybrid screen, that binds Mps1p, a protein kinase
essential for spindle pole body duplication and mitotic
checkpoint regulation. Mob1 contains no known structural
motifs; however MOB1 is a member of a conserved gene
family and shares sequence similarity with a
nonessential yeast gene, MOB2. Mob1 is a phosphoprotein
in vivo and a substrate for the Mps1p kinase in vitro.
Conditional alleles of MOB1 cause a late nuclear
division arrest at restrictive temperature. This family
also includes phocein, a rat protein that by yeast two
hybrid interacts with striatin.
Length = 171
Score = 283 bits (725), Expect = 2e-98
Identities = 111/172 (64%), Positives = 142/172 (82%), Gaps = 2/172 (1%)
Query: 38 ATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYGTITEFCTEESCPIMSAGPKY 97
ATLGSG+L+ V LP+GEDLNEW+AV+ VDFFN+IN+LYGTI+EFCT ++CP MSAGP+Y
Sbjct: 2 ATLGSGDLKTIVKLPEGEDLNEWIAVHVVDFFNEINLLYGTISEFCTPQTCPQMSAGPQY 61
Query: 98 EYHWADGHTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILK 157
EY WAD KP + AP+YID+L+ W++ QL+DE +FP+K+GVPFPKNF LI K IL+
Sbjct: 62 EYLWADEK--GKPTRLPAPQYIDHLLDWIETQLNDEKIFPTKVGVPFPKNFKLIVKKILR 119
Query: 158 RLFRVYAHIYHQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIERRELAPLQ 209
RLFR++AHIY HF E+V+L E HLNT FKHF+ FV+EFNLI+R+EL PL+
Sbjct: 120 RLFRIFAHIYFHHFDEIVELELETHLNTRFKHFVSFVREFNLIDRKELEPLK 171
>gnl|CDD|218871 pfam06046, Sec6, Exocyst complex component Sec6. Sec6 is a
component of the multiprotein exocyst complex. Sec6
interacts with Sec8, Sec10 and Exo70.These exocyst
proteins localise to regions of active exocytosis-at the
growing ends of interphase cells and in the medial
region of cells undergoing cytokinesis-in an
F-actin-dependent and exocytosis- independent manner.
Length = 557
Score = 28.5 bits (64), Expect = 3.2
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 13/42 (30%)
Query: 144 FPKNFLLIAKTILKRLFRVYAHIYHQHFS----EVVQLGEEA 181
FP ++ +F+ Y +IYH E+ EA
Sbjct: 129 FPPHY---------NIFKTYVNIYHNALHDFLQELADPELEA 161
>gnl|CDD|226706 COG4255, COG4255, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 318
Score = 27.6 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 36 AAATLGSGNLRLAVMLPDGEDLNEWVAVNT 65
A L G L A PDGED EW V T
Sbjct: 139 AKPVLDLGGLLGADDQPDGEDAREWRRVQT 168
>gnl|CDD|220570 pfam10102, DUF2341, Domain of unknown function (DUF2341).
Members of this family are found in various bacterial
proteins, including MotA/TolQ/ExbB proton channels and
other transport proteins. The exact function of this
set of domains has not, as yet, been determined.
Length = 88
Score = 26.2 bits (58), Expect = 6.5
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 52 PDGEDLNEWVAVNTVDFFNQINMLYGT 78
P E WV V ++ I + YG
Sbjct: 24 PTSETALIWVKVPSIAGTTTIYLYYGN 50
>gnl|CDD|219740 pfam08192, Peptidase_S64, Peptidase family S64. This family of
fungal proteins is involved in the processing of
membrane bound transcription factor Stp1. The processing
causes the signalling domain of Stp1 to be passed to the
nucleus where several permease genes are induced. The
permeases are important for uptake of amino acids, and
processing of tp1 only occurs in an amino acid-rich
environment. This family is predicted to be distantly
related to the trypsin family (MEROPS:S1) and to have a
typical trypsin-like catalytic triad.
Length = 644
Score = 27.4 bits (61), Expect = 6.8
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 156 LKRLFRVYAHIYHQHFSEVVQLGEEAHLNTS---FKHFIFFVQEFNLIERRELAPLQELI 212
L+++ ++ H Y L E ++N+ K+F F+++ N L
Sbjct: 179 LRKIIKIVLHFYDN------LLNSEVYINSRLLLLKNFNDFLKKLNSEVDDADVLSGVLP 232
Query: 213 E 213
+
Sbjct: 233 K 233
>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2
[Posttranslational modification, protein turnover,
chaperones].
Length = 929
Score = 27.6 bits (61), Expect = 7.2
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 145 PKNFLLIAKTILKRLFRVYAHIYHQ-HFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIERR 203
P+ + AK +L+R+ VY ++ + F E V A SF FF + + E +
Sbjct: 763 PEQYGFNAKNLLRRMVMVYINLRSESKFVEAV-----ASDKRSFDI-DFFRRALRICENK 816
Query: 204 ELAPLQELIEKL 215
L + IE+L
Sbjct: 817 YLIS-ESQIEEL 827
>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE. Members
of this protein family are exclusive to the
Bacteroidetes phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldC is a protein
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. GldE was
discovered because of its adjacency to GldD in F.
johnsonii. Overexpression of GldE partially supresses
the effects of a GldB point mutant suggesting that GldB
and GldE interact. Gliding motility appears closely
linked to chitin utilization in the model species
Flavobacterium johnsoniae. Not all Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility and in fact some
do not appear to express the gliding phenotype.
Length = 408
Score = 26.9 bits (60), Expect = 8.7
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 126 VQDQLDDETLFPSKIGVPFPKNFLLIAKTILKRLFRV 162
+ D+ DDE L SKI N++ KT LK +++
Sbjct: 314 ISDEFDDEDLIYSKID---DNNYVFEGKTSLKDFYKI 347
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 27.1 bits (60), Expect = 8.8
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 95 PKYEYHWADGHTVKKP--IKCSAPKY 118
PK++ +W + T + P + S PK+
Sbjct: 87 PKWQRYWEENRTFRTPDDVDTSKPKF 112
>gnl|CDD|226678 COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase
involved in regulation of bacterial surface properties,
and related proteins [General function prediction only].
Length = 357
Score = 27.0 bits (60), Expect = 9.4
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 117 KYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILKRLFRVYAHI 166
+Y+DYL TW +Q+D+ L P I + + T L +Y
Sbjct: 56 EYLDYLKTWFDEQIDEGGLPPRNI------DHIAAGLT----LLPLYEQT 95
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,408,270
Number of extensions: 1056388
Number of successful extensions: 874
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 14
Length of query: 221
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 128
Effective length of database: 6,812,680
Effective search space: 872023040
Effective search space used: 872023040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)