RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7322
(221 letters)
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo
sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Length = 185
Score = 262 bits (671), Expect = 3e-90
Identities = 163/182 (89%), Positives = 173/182 (95%)
Query: 38 ATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYGTITEFCTEESCPIMSAGPKY 97
ATLGSGNLR AVMLP+GEDLNEW+AVNTVDFFNQINMLYGTITEFCTE SCP+MSAGP+Y
Sbjct: 3 ATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRY 62
Query: 98 EYHWADGHTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILK 157
EYHWADG +KKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNF+ +AKTILK
Sbjct: 63 EYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILK 122
Query: 158 RLFRVYAHIYHQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIERRELAPLQELIEKLTA 217
RLFRVYAHIYHQHF V+QL EEAHLNTSFKHFIFFVQEFNLI+RRELAPLQELIEKL +
Sbjct: 123 RLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGS 182
Query: 218 KD 219
KD
Sbjct: 183 KD 184
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell
cycle; 2.00A {Saccharomyces cerevisiae}
Length = 236
Score = 262 bits (671), Expect = 1e-89
Identities = 103/217 (47%), Positives = 136/217 (62%), Gaps = 3/217 (1%)
Query: 4 SFPCFSGSRSSKTFKPKKNIPEGTHQYDLMKHAAATLGS-GNLRLAVMLPDGEDLNEWVA 62
K F + T D+ + TLGS G L AV LP GED NEW+A
Sbjct: 21 VTDFNYTPSHQKPFLQPQAGTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWLA 80
Query: 63 VNTVDFFNQINMLYGTITEFCTEESCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYIDYL 122
V+ VDF+NQINMLYG+ITEFC+ ++CP M A +YEY WA + P+ SAPKY++ L
Sbjct: 81 VHCVDFYNQINMLYGSITEFCSPQTCPRMIATNEYEYLWAF-QKGQPPVSVSAPKYVECL 139
Query: 123 MTWVQDQLDDETLFPSKIGVPFPKNFLL-IAKTILKRLFRVYAHIYHQHFSEVVQLGEEA 181
M W QDQ DDE+LFPSK+ FP+ F+ + + IL+RLFRVYAHIY HF+E+++L +
Sbjct: 140 MRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQT 199
Query: 182 HLNTSFKHFIFFVQEFNLIERRELAPLQELIEKLTAK 218
LNTSF+HF F QEF L+ + PL EL+ +L +
Sbjct: 200 VLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRDR 236
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.036
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 57/172 (33%)
Query: 22 NIP-EGTHQYDLMKHAAATLGSGNLRLAVMLPDGEDLNEWVAV-----NTVDFFNQINML 75
P + L + GN +L VA+ NT D+F ++ L
Sbjct: 134 KRPFDKKSNSALFRAVGE----GNAQL-------------VAIFGGQGNTDDYFEELRDL 176
Query: 76 YGT----ITEFCTEESCPIMSAGPKYEYHWADGHTVKKPIKCSA--PKYIDYLMTWVQDQ 129
Y T + + I + ++ + + ++ ++ W
Sbjct: 177 YQTYHVLVGDL-------IKFSAETLS------ELIRTTLDAEKVFTQGLN-ILEW---- 218
Query: 130 LDDETLFPSK-----IGVPFPKNFLLIAKTILKRLFRVYAHIYHQHFSEVVQ 176
L++ + P K I + P LI L + V A + E+
Sbjct: 219 LENPSNTPDKDYLLSIPISCP----LIGVIQLAH-YVVTAKLLGFTPGELRS 265
Score = 29.2 bits (65), Expect = 1.4
Identities = 36/226 (15%), Positives = 65/226 (28%), Gaps = 72/226 (31%)
Query: 39 TLGSGNLRLAVMLPDGEDLNEWVAVNTV-DFFNQINMLYGTITEFCT--EESCPIMSAGP 95
TL G+L +++P + + + + FN+I L F E + P
Sbjct: 10 TLSHGSLEHVLLVPT----ASFFIASQLQEQFNKI--LPEPTEGFAADDEPTTPA----- 58
Query: 96 KYEYHWAD--GHTVKKPIKCSAPKYIDYLMTWVQDQLDDETL-----------FPSKIGV 142
E G+ ++ L + + ++ L +
Sbjct: 59 --EL-VGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDT 114
Query: 143 PFPKNFLLI-----AKTILKR---------LFRV----YAHIY---------HQHFSEVV 175
K LI A+ + KR LFR A + +F E+
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 176 QLGEEAHLNTSFKHFIFFVQEFNLIER-RELAPLQELIEKLTAKDP 220
L ++ + V + I+ E L ELI +
Sbjct: 175 DL---------YQTYHVLVGDL--IKFSAET--LSELIRTTLDAEK 207
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 30.8 bits (70), Expect = 0.26
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 77 GTITEFCTEESCPIMSAGPKYEYHWADGHTVKKPIKCSAPKYIDYLMTWVQ 127
G ++ +S +S P G +V + C A + I + W +
Sbjct: 133 GGGSDIVLTQSPVTLSVTP--------GDSVS--LSCRASQSISNNLHWYR 173
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.37
Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 33/136 (24%)
Query: 76 YGTITEFCTEESCPIMSAGPKYE---YHWADGHTVKKPIKCSAPKYIDYLMTWVQ----- 127
Y F +++ P Y +H + ++ ++D+ +++
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM-VFLDF--RFLEQKIRH 509
Query: 128 ------------DQLDDETLFPSKIGVPFPKNFLLIAKTILKRLFRVYAHIYHQHFSEVV 175
+ L + I PK L+ IL L ++ ++ +++++
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV-NAILDFLPKIEENLICSKYTDLL 568
Query: 176 QLG---------EEAH 182
++ EEAH
Sbjct: 569 RIALMAEDEAIFEEAH 584
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 30.2 bits (67), Expect = 0.39
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 20 KKNIPEGTHQYDLMKHAAATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYGTI 79
++ +L + N +L L + + VD Q YG +
Sbjct: 46 SHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALR-EEVDRLGQPPSGYGVL 104
Query: 80 TEFCTEESCPIMSAGPKY 97
+++ + ++G K
Sbjct: 105 LATHDDDTVDVFTSGRKM 122
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Length = 259
Score = 29.2 bits (66), Expect = 0.97
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 104 GHTVKKPIKCSAPKYIDYLMTWVQ 127
G T+ I C A + I+ ++W Q
Sbjct: 16 GDTIT--ITCHASQNINLWLSWYQ 37
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 28.3 bits (63), Expect = 1.7
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 104 GHTVKKPIKCSAPKYIDYLMTWVQ 127
G +VK I+C + + M W +
Sbjct: 16 GTSVK--IECRSLDFQATTMFWYR 37
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 28.3 bits (63), Expect = 1.9
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 104 GHTVKKPIKCSAPKYIDYLMTWVQ 127
G +VK I+C + + M W +
Sbjct: 39 GTSVK--IECRSLDFQATTMFWYR 60
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 27.9 bits (62), Expect = 2.3
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 104 GHTVKKPIKCSAPKYIDYLMTWVQ 127
G V ++C M+W Q
Sbjct: 16 GQAVN--LRCILKNSQYPWMSWYQ 37
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked
with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Length = 250
Score = 27.6 bits (62), Expect = 2.6
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 104 GHTVKKPIKCSAPKYIDYLMTWVQ 127
G V I C A + I + W Q
Sbjct: 19 GDRVT--ISCRASQDIRNYLNWYQ 40
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 27.5 bits (61), Expect = 3.4
Identities = 3/24 (12%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 104 GHTVKKPIKCSAPKYIDYLMTWVQ 127
G + ++C+ + + W +
Sbjct: 16 GSPLS--LECTVEGTSNPNLYWYR 37
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 26.9 bits (60), Expect = 5.9
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 7/43 (16%)
Query: 36 AAATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFF-NQINMLYG 77
A LG G + LP ++ + L
Sbjct: 422 AGRDLG-GRVTQESALPGLSAWGR-----VKEYREAVLAELPN 458
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,484,546
Number of extensions: 202566
Number of successful extensions: 622
Number of sequences better than 10.0: 1
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 16
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)