RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7322
         (221 letters)



>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score =  297 bits (761), Expect = e-104
 Identities = 163/182 (89%), Positives = 173/182 (95%)

Query: 38  ATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINMLYGTITEFCTEESCPIMSAGPKY 97
           ATLGSGNLR AVMLP+GEDLNEW+AVNTVDFFNQINMLYGTITEFCTE SCP+MSAGP+Y
Sbjct: 3   ATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRY 62

Query: 98  EYHWADGHTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLLIAKTILK 157
           EYHWADG  +KKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNF+ +AKTILK
Sbjct: 63  EYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILK 122

Query: 158 RLFRVYAHIYHQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIERRELAPLQELIEKLTA 217
           RLFRVYAHIYHQHF  V+QL EEAHLNTSFKHFIFFVQEFNLI+RRELAPLQELIEKL +
Sbjct: 123 RLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGS 182

Query: 218 KD 219
           KD
Sbjct: 183 KD 184


>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda
           variable domain, VL-lambda {Human (Homo sapiens),
           cluster 5 [TaxId: 9606]}
          Length = 103

 Score = 25.8 bits (56), Expect = 2.0
 Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 2/24 (8%)

Query: 104 GHTVKKPIKCSAPKYIDYLMTWVQ 127
           G T +  I CSA    +    W Q
Sbjct: 13  GQTAR--ITCSANALPNQYAYWYQ 34


>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable
           domain, VL-kappa {Mouse (Mus musculus), cluster 4
           [TaxId: 10090]}
          Length = 106

 Score = 24.3 bits (52), Expect = 6.8
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)

Query: 104 GHTVKKPIKCSAPKYIDYLMTWVQDQ 129
           G  V   I C A + I   + W Q +
Sbjct: 15  GGKVT--ITCKASQDIKKYIGWYQHK 38


>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable
           domain, VL-kappa {Mouse (Mus musculus), cluster 4
           [TaxId: 10090]}
          Length = 107

 Score = 24.2 bits (52), Expect = 8.5
 Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 104 GHTVKKPIKCSAPKYIDYLMTWVQDQ 129
           G  V   I C A + I+  + W Q +
Sbjct: 16  GDRVT--ISCRASQDINNFLNWYQQK 39


>d1oh4a_ b.18.1.18 (A:) Beta-mannosidase, C-terminal domain
          {Thermotoga maritima [TaxId: 2336]}
          Length = 174

 Score = 24.4 bits (53), Expect = 8.8
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 25 EGTHQYDLMKHA---AATLGSGNLRLAVMLPDGEDLNEWVAVNTVDFFNQINML 75
           GT Q +           +G+G L+L V LP   D  E       +  ++  +L
Sbjct: 23 SGTWQAEFGSPDIEWNGEVGNGALQLNVKLPGKSDWEEVRVARKFERLSECEIL 76


>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable
           domain, VL-kappa {Engineered (including hybrid species)}
          Length = 106

 Score = 23.9 bits (51), Expect = 9.0
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 104 GHTVKKPIKCSAPKYIDYLMTWVQDQ 129
           G T+   I C A + I+  + W Q +
Sbjct: 15  GDTIT--ITCRASQSIETWLAWYQQK 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 868,059
Number of extensions: 40327
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 9
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)