BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7326
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V5S|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM METHANOCOCCUS
JANNASCHII
pdb|3V5U|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM
METHANOCALDOCOCCUS Jannaschii Dsm 2661
Length = 320
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 42 IIHYITFQWKVRTNYSASFQVLFALIPPPKIFHGWLTFFVTLIVMGLIMTLTG-----DL 96
I+ I +W V+ N SA + P +F + L+++GLI L G D
Sbjct: 133 ILFIIYLRWTVK-NGSAEIEENNDKNNPSVVFS------LVLLIIGLIGVLVGAELFVDG 185
Query: 97 ARRFGCVIGLSDTITGITLVALGTSLPEIVGASFAARGEKEADGCLSHILG 147
A++ + +SD + G TLVA GTSLPE++ S AA L +++G
Sbjct: 186 AKKIALALDISDKVIGFTLVAFGTSLPELM-VSLAAAKRNLGGMVLGNVIG 235
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 4/37 (10%)
Query: 96 LARRFGCVIGLSDTITGITLVALGTSLPEIVGASFAA 132
+AR F +S+ + G T++A+GTSLPEI+ +++A+
Sbjct: 30 IARHFN----VSNFVIGATVMAIGTSLPEILTSAYAS 62
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 94 GDLARRFGCVIGLSDTITGITLVALGTSLPEIV 126
GDL G V+GL +TITG TLV G P ++
Sbjct: 372 GDL----GAVVGLKETITGDTLV--GEDAPRVI 398
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 94 GDLARRFGCVIGLSDTITGITLVALGTSLPEIV 126
GDL G V+GL +TITG TLV G P ++
Sbjct: 339 GDL----GAVVGLKETITGDTLV--GEDAPRVI 365
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 94 GDLARRFGCVIGLSDTITGITLVALGTSLPEIV 126
GDL G V+GL +TITG TLV G P ++
Sbjct: 372 GDL----GAVVGLKETITGDTLV--GEDAPRVI 398
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 94 GDLARRFGCVIGLSDTITGITLVALGTSLPEIV 126
GDL G V+GL +TITG TLV G P ++
Sbjct: 372 GDL----GAVVGLKETITGDTLV--GEDAPRVI 398
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 94 GDLARRFGCVIGLSDTITGITLVALGTSLPEIV 126
GDL G V+GL +TITG TLV G P ++
Sbjct: 372 GDL----GAVVGLKETITGDTLV--GEDAPRVI 398
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 94 GDLARRFGCVIGLSDTITGITLVALGTSLPEIV 126
GDL G V+GL +TITG TLV G P ++
Sbjct: 372 GDL----GAVVGLKETITGDTLV--GEDAPRVI 398
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 94 GDLARRFGCVIGLSDTITGITLVALGTSLPEIV 126
GDL G V+GL +TITG TLV G P ++
Sbjct: 372 GDL----GAVVGLKETITGDTLV--GEDAPRVI 398
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 94 GDLARRFGCVIGLSDTITGITLVALGTSLPEIV 126
GDL G V+GL +TITG TLV G P ++
Sbjct: 372 GDL----GAVVGLKETITGDTLV--GEDAPRVI 398
>pdb|2OO3|A Chain A, Crystal Structure Of Protein Lpl1258 From Legionella
Pneumophila Str. Philadelphia 1, Pfam Duf519
Length = 283
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 36 ATTYDYIIHYITFQWKVRTNYSASFQVLFALIPPPK 71
T Y++++ F KV N++ L AL+PPP+
Sbjct: 123 PTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPE 158
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 94 GDLARRFGCVIGLSDTITGITLVALGTSLPEIV 126
GDL G V+GL +TITG TLV G P ++
Sbjct: 372 GDL----GAVVGLKETITGDTLV--GEDAPRVI 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,174,166
Number of Sequences: 62578
Number of extensions: 195161
Number of successful extensions: 451
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 13
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)