Query psy7326
Match_columns 182
No_of_seqs 198 out of 1335
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 23:56:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 99.7 2.6E-17 8.8E-22 144.3 5.2 92 76-168 6-97 (320)
2 3v5u_A Uncharacterized membran 99.7 2.9E-17 1E-21 143.9 5.0 91 76-167 165-255 (320)
3 2jmf_B Neurogenic locus notch 7.5 2E+02 0.0067 15.8 1.4 17 28-44 6-22 (26)
4 1pfi_A Major coat protein of P 7.4 2.1E+02 0.0073 17.8 1.7 30 135-167 14-43 (46)
5 2zjs_Y Preprotein translocase 5.5 1.4E+03 0.049 20.0 8.9 50 81-131 156-205 (434)
6 1j5u_A Archease, possible chap 5.5 2.9E+02 0.0098 20.7 1.9 19 115-133 25-43 (136)
7 2zy9_A Mg2+ transporter MGTE; 5.4 6.9E+02 0.024 21.8 4.7 7 117-123 426-432 (473)
8 2dll_A Interferon regulatory f 5.2 3.2E+02 0.011 20.1 2.0 16 16-31 76-91 (121)
9 3mp7_B Preprotein translocase 4.8 6.5E+02 0.022 16.3 3.1 29 66-94 23-52 (61)
10 3o7q_A L-fucose-proton symport 4.7 9.6E+02 0.033 18.9 4.8 25 91-115 43-67 (438)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.67 E-value=2.6e-17 Score=144.26 Aligned_cols=92 Identities=21% Similarity=0.281 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceehhhhhhcccChHHHHHHHHHHhcCCCCCchhccccchhHHHHHH
Q psy7326 76 WLTFFVTLIVMGLIMTLTGDLARRFGCVIGLSDTITGITLVALGTSLPEIVGASFAARGEKEADGCLSHILGRIAVTVLV 155 (182)
Q Consensus 76 w~~F~~sl~~Ig~~~~~i~~~a~~ig~~lgI~~~v~GlT~vA~GTSlPEl~asi~aA~~~g~~dmAvgniiGSNifNill 155 (182)
+..|+.++..+-..+-.+.+.++.+++.+|+|+.++|+|++|+|||+||+++++.|++ +|++|+|+||++|||+||+++
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~-~g~~diaiGnivGSni~nill 84 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASY-MHAPGISIGNAIGSCICNIGL 84 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHh-CCCCceeeeeecchHHHHHHH
Confidence 3456677777777788888999999999999999999999999999999999999999 599999999999999999999
Q ss_pred hhhHHHHHHHHhh
Q psy7326 156 GVGMPWLVAAIYH 168 (182)
Q Consensus 156 ~lGL~~li~~i~~ 168 (182)
++|++.++.++..
T Consensus 85 vlG~~~li~p~~v 97 (320)
T 3v5u_A 85 VLGLSAIISPIIV 97 (320)
T ss_dssp HHHHHHHHSCBCC
T ss_pred HHHHHHHHccccc
Confidence 9999999987543
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.67 E-value=2.9e-17 Score=143.91 Aligned_cols=91 Identities=25% Similarity=0.316 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceehhhhhhcccChHHHHHHHHHHhcCCCCCchhccccchhHHHHHH
Q psy7326 76 WLTFFVTLIVMGLIMTLTGDLARRFGCVIGLSDTITGITLVALGTSLPEIVGASFAARGEKEADGCLSHILGRIAVTVLV 155 (182)
Q Consensus 76 w~~F~~sl~~Ig~~~~~i~~~a~~ig~~lgI~~~v~GlT~vA~GTSlPEl~asi~aA~~~g~~dmAvgniiGSNifNill 155 (182)
+..++.++..+...+..+.+.++.+++.+|+|+.++|+|++|+|||+||+++++.+++ +|+.|+|+||++|||+||+++
T Consensus 165 ~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~-~g~~~laig~iiGS~ifn~~~ 243 (320)
T 3v5u_A 165 LVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAK-RNLGGMVLGNVIGSNIADIGG 243 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHH-cCCCcHHHHHHHhHHHHHHHH
Confidence 3566777888888899999999999999999999999999999999999999999999 699999999999999999999
Q ss_pred hhhHHHHHHHHh
Q psy7326 156 GVGMPWLVAAIY 167 (182)
Q Consensus 156 ~lGL~~li~~i~ 167 (182)
++|+++++.++.
T Consensus 244 v~g~~~li~p~~ 255 (320)
T 3v5u_A 244 ALAVGSLFMHLP 255 (320)
T ss_dssp HHHHHHHHSCBC
T ss_pred HHHHHHhhcccc
Confidence 999999987644
No 3
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=7.51 E-value=2e+02 Score=15.78 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=12.6
Q ss_pred cCCCCCCCCCchhhhhh
Q psy7326 28 VNGGDVSSATTYDYIIH 44 (182)
Q Consensus 28 ~~~~~~~~~~~~~~~~h 44 (182)
.|.|...|||..|++-.
T Consensus 6 pntgakqppsyedcik~ 22 (26)
T 2jmf_B 6 PNTGAKQPPSYEDCIKX 22 (26)
T ss_pred CCCCCCCCCCHHHHHHh
Confidence 45667789999898743
No 4
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=7.39 E-value=2.1e+02 Score=17.82 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=21.6
Q ss_pred CCCCCchhccccchhHHHHHHhhhHHHHHHHHh
Q psy7326 135 EKEADGCLSHILGRIAVTVLVGVGMPWLVAAIY 167 (182)
Q Consensus 135 ~g~~dmAvgniiGSNifNill~lGL~~li~~i~ 167 (182)
+|..||. .+|.-++-.++.+.++.++..+.
T Consensus 14 ~G~~Dm~---si~~~IVGaLvil~VAGLiysm~ 43 (46)
T 1pfi_A 14 DGQGDMK---AIGGYIVGALVILAVAGLIYSML 43 (46)
T ss_dssp HHTHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778874 45677777888888887776553
No 5
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=5.55 E-value=1.4e+03 Score=20.02 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceehhhhhhcccChHHHHHHHHH
Q psy7326 81 VTLIVMGLIMTLTGDLARRFGCVIGLSDTITGITLVALGTSLPEIVGASFA 131 (182)
Q Consensus 81 ~sl~~Ig~~~~~i~~~a~~ig~~lgI~~~v~GlT~vA~GTSlPEl~asi~a 131 (182)
...+.+..-+.++.|++|.+-+ -|+..-+-=+.+..+-.++|..+.+...
T Consensus 156 ~~vl~L~aGt~~lmwLgE~It~-~GIGnGiSliI~~gIv~~lp~~~~~~~~ 205 (434)
T 2zjs_Y 156 VVVVTQVAGIALLLWMAERITE-YGIGNGTSLIIFAGIVVEWLPQILRTIG 205 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TSSSCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566777799999988 7999877667777888999998877654
No 6
>1j5u_A Archease, possible chaperone; structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: d.208.1.1
Probab=5.51 E-value=2.9e+02 Score=20.66 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=16.2
Q ss_pred hhhcccChHHHHHHHHHHh
Q psy7326 115 LVALGTSLPEIVGASFAAR 133 (182)
Q Consensus 115 ~vA~GTSlPEl~asi~aA~ 133 (182)
+-|.|.|++|+|.+.+.|.
T Consensus 25 i~a~G~tleEaFe~aa~Am 43 (136)
T 1j5u_A 25 YEISGNSYEELLEEARNIL 43 (136)
T ss_dssp EEEEESSHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHH
Confidence 4589999999999987775
No 7
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=5.39 E-value=6.9e+02 Score=21.76 Aligned_cols=7 Identities=43% Similarity=0.857 Sum_probs=4.8
Q ss_pred hcccChH
Q psy7326 117 ALGTSLP 123 (182)
Q Consensus 117 A~GTSlP 123 (182)
-+|+.+|
T Consensus 426 ~~g~~~p 432 (473)
T 2zy9_A 426 LVGAMLP 432 (473)
T ss_dssp HHHTTHH
T ss_pred HHHHHHH
Confidence 3477778
No 8
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.24 E-value=3.2e+02 Score=20.09 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=12.8
Q ss_pred cchHHHHhhhcccCCC
Q psy7326 16 ETWGQQLTSAMNVNGG 31 (182)
Q Consensus 16 ~~w~~q~~~a~~~~~~ 31 (182)
.+||..|+-||+-..+
T Consensus 76 ~~wK~nfRcALn~~~~ 91 (121)
T 2dll_A 76 PTWKTRLRCALNKSND 91 (121)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhccCCC
Confidence 6899999999976543
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=4.81 E-value=6.5e+02 Score=16.28 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=17.1
Q ss_pred EcCCCCccchH-HHHHHHHHHHHHHHHHHH
Q psy7326 66 LIPPPKIFHGW-LTFFVTLIVMGLIMTLTG 94 (182)
Q Consensus 66 ~iPp~~~~~gw-~~F~~sl~~Ig~~~~~i~ 94 (182)
.=||.+.+..- ..-.+.++.+|.+++++-
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777765554 233445566677777664
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=4.74 E-value=9.6e+02 Score=18.95 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhCCCcceehhhh
Q psy7326 91 TLTGDLARRFGCVIGLSDTITGITL 115 (182)
Q Consensus 91 ~~i~~~a~~ig~~lgI~~~v~GlT~ 115 (182)
....-....+.+.+|+++...|+..
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~ 67 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQ 67 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3444445556666777777666543
Done!