Query psy7326
Match_columns 182
No_of_seqs 198 out of 1335
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 23:56:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7326.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7326hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmeb2 f.17.2.1 (B:3-36) Bact 15.4 65 0.0047 17.3 2.7 17 72-88 12-28 (34)
2 d1vg0a1 c.3.1.3 (A:3-444,A:558 11.8 48 0.0035 28.1 2.1 22 115-137 9-30 (491)
3 d2a5sa1 c.94.1.1 (A:7-142,A:14 10.1 34 0.0025 25.2 0.5 48 95-146 59-110 (277)
4 d1qgoa_ c.92.1.2 (A:) Cobalt c 9.3 47 0.0034 24.6 1.1 37 112-148 3-43 (257)
5 d1rxwa2 c.120.1.2 (A:3-219) Fl 6.7 1.1E+02 0.008 22.1 2.2 56 10-71 21-84 (217)
6 d1a77a2 c.120.1.2 (A:2-208) Fl 6.5 1.6E+02 0.012 20.9 3.1 22 10-31 22-43 (207)
7 d2fnaa1 a.4.5.11 (A:284-356) H 6.2 35 0.0025 21.9 -1.0 40 9-50 13-53 (73)
8 d1b43a2 c.120.1.2 (A:1-219) Fl 5.4 2.1E+02 0.015 20.4 3.1 19 10-28 22-40 (219)
9 d1jw3a_ d.208.1.1 (A:) Hypothe 5.1 1.2E+02 0.0091 20.7 1.5 20 115-134 15-34 (140)
10 d1j5ua_ d.208.1.1 (A:) Hypothe 5.0 1.4E+02 0.01 20.1 1.7 19 115-133 16-34 (127)
No 1
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=15.43 E-value=65 Score=17.34 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=11.2
Q ss_pred ccchHHHHHHHHHHHHH
Q psy7326 72 IFHGWLTFFVTLIVMGL 88 (182)
Q Consensus 72 ~~~gw~~F~~sl~~Ig~ 88 (182)
+-+||+.|.++.++..+
T Consensus 12 yekgwlafslamlfvfi 28 (34)
T d1xmeb2 12 YEKGWLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 34689888776655433
No 2
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.76 E-value=48 Score=28.14 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=18.4
Q ss_pred hhhcccChHHHHHHHHHHhcCCC
Q psy7326 115 LVALGTSLPEIVGASFAARGEKE 137 (182)
Q Consensus 115 ~vA~GTSlPEl~asi~aA~~~g~ 137 (182)
++-+||.|||-+.|.+.+| .|+
T Consensus 9 VII~GTGL~ESILAaAlSr-~Gk 30 (491)
T d1vg0a1 9 VIVIGTGLPESIIAAACSR-SGQ 30 (491)
T ss_dssp EEEECCSHHHHHHHHHHHH-TTC
T ss_pred EEEECCChHHHHHHHHHHh-cCC
Confidence 3568999999999999999 464
No 3
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]}
Probab=10.09 E-value=34 Score=25.20 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCcceehhhhhhc----ccChHHHHHHHHHHhcCCCCCchhcccc
Q psy7326 95 DLARRFGCVIGLSDTITGITLVAL----GTSLPEIVGASFAARGEKEADGCLSHIL 146 (182)
Q Consensus 95 ~~a~~ig~~lgI~~~v~GlT~vA~----GTSlPEl~asi~aA~~~g~~dmAvgnii 146 (182)
|+...++..+|++-.+.=..---. -++..+++..+ ++|+.|++++++.
T Consensus 59 Dl~~~ia~~lg~~~e~~~v~~~~~g~~~~~~w~~~l~~l----~~g~~Di~i~~~t 110 (277)
T d2a5sa1 59 DILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEV----VYQRAVMAVGSLT 110 (277)
T ss_dssp HHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHH----HTTSCSEECSSCB
T ss_pred HHHHHHHHHhCCCEEEEEccCCCcCccCCCCHHHHHhhh----hcccEEEEEEccE
Confidence 778888899998765531110011 23455555443 3699999988654
No 4
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]}
Probab=9.34 E-value=47 Score=24.58 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=23.8
Q ss_pred hhhhhhcccChHHHHH----HHHHHhcCCCCCchhccccch
Q psy7326 112 GITLVALGTSLPEIVG----ASFAARGEKEADGCLSHILGR 148 (182)
Q Consensus 112 GlT~vA~GTSlPEl~a----si~aA~~~g~~dmAvgniiGS 148 (182)
|+.++++||+.||..- .+....++.++|.-+--++=|
T Consensus 3 aillv~fGs~~~e~~~~~i~~i~~~v~~~~Pd~~V~~afts 43 (257)
T d1qgoa_ 3 ALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTS 43 (257)
T ss_dssp EEEEEECCCSCHHHHHHHHHHHHHHHHHTCTTSEEEEEECC
T ss_pred EEEEEeCCCCchhhHHHHHHHHHHHHHHHCCCCeEEeeehh
Confidence 6788999999998863 233333346777766544433
No 5
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.72 E-value=1.1e+02 Score=22.09 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=31.3
Q ss_pred ceeecccchHHHHhhhcccCCCC------CCCCCchhhhhhhhhhhheeecccccccceeEEE--cCCCC
Q psy7326 10 AIAVHSETWGQQLTSAMNVNGGD------VSSATTYDYIIHYITFQWKVRTNYSASFQVLFAL--IPPPK 71 (182)
Q Consensus 10 ~~~~~~~~w~~q~~~a~~~~~~~------~~~~~~~~~~~h~~~~~wkv~~~~~~~~~~l~a~--iPp~~ 71 (182)
.+.+-.+.|--||..++.-..++ ..+.+...++++.+..+ ....+..+|-| .||+.
T Consensus 21 ~vAIDas~wL~k~l~~~~~~~~~~l~~~~~~~~~~l~~~~~ri~~l------~~~~I~pifVFDG~~p~~ 84 (217)
T d1rxwa2 21 KIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNM------VEVGIRPVFVFDGEPPEF 84 (217)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHH------HHHTCEEEEEECCSCCGG
T ss_pred EEEEECHHHHHHHHHHhccccCCchhhccCCccHHHHHHHHHHHHH------HHcCCeEEEEECCCCCcc
Confidence 46788899999998776433221 22334555555554333 22334436666 56654
No 6
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.52 E-value=1.6e+02 Score=20.94 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=16.6
Q ss_pred ceeecccchHHHHhhhcccCCC
Q psy7326 10 AIAVHSETWGQQLTSAMNVNGG 31 (182)
Q Consensus 10 ~~~~~~~~w~~q~~~a~~~~~~ 31 (182)
.+.+-.+.|--||..++....+
T Consensus 22 ~vaIDas~~L~~~l~~~~~~~~ 43 (207)
T d1a77a2 22 KVAIDGMNALYQFLTSIRLRDG 43 (207)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTS
T ss_pred EEEEEChHHHHHHHHHhhcccC
Confidence 4678889999999887765443
No 7
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.21 E-value=35 Score=21.92 Aligned_cols=40 Identities=18% Similarity=0.580 Sum_probs=24.4
Q ss_pred cceeecccchHHHHhhhcccCCCC-CCCCCchhhhhhhhhhhh
Q psy7326 9 DAIAVHSETWGQQLTSAMNVNGGD-VSSATTYDYIIHYITFQW 50 (182)
Q Consensus 9 ~~~~~~~~~w~~q~~~a~~~~~~~-~~~~~~~~~~~h~~~~~w 50 (182)
+++..| .+| +++++.+....|. ..++.....+-++.=..|
T Consensus 13 kaia~G-~rW-s~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~ 53 (73)
T d2fnaa1 13 RTLSKC-GKW-SDVKRALELEEGIEISDSEIYNYLTQLTKHSW 53 (73)
T ss_dssp HHHTTC-BCH-HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcc-CcH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHcCc
Confidence 345678 579 7899998777665 444455555444443344
No 8
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=5.35 E-value=2.1e+02 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=14.1
Q ss_pred ceeecccchHHHHhhhccc
Q psy7326 10 AIAVHSETWGQQLTSAMNV 28 (182)
Q Consensus 10 ~~~~~~~~w~~q~~~a~~~ 28 (182)
.+.+-.+.|--|+.-++.-
T Consensus 22 ~iaIDas~~L~k~l~~~~~ 40 (219)
T d1b43a2 22 KIAIDALNAIYQFLSTIRQ 40 (219)
T ss_dssp EEEEEHHHHHHHHHHHSBC
T ss_pred EEEEEChHHHHHHHHHhcc
Confidence 4678888999888766543
No 9
>d1jw3a_ d.208.1.1 (A:) Hypothetical protein MTH1598 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.10 E-value=1.2e+02 Score=20.71 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=16.7
Q ss_pred hhhcccChHHHHHHHHHHhc
Q psy7326 115 LVALGTSLPEIVGASFAARG 134 (182)
Q Consensus 115 ~vA~GTSlPEl~asi~aA~~ 134 (182)
+-+.|.|+||++...+.|..
T Consensus 15 i~~~g~tleelf~~aa~am~ 34 (140)
T d1jw3a_ 15 FWAYGHDLEEVFENAALAMF 34 (140)
T ss_dssp EEEECSSSHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 45899999999999877763
No 10
>d1j5ua_ d.208.1.1 (A:) Hypothetical protein TM1083 {Thermotoga maritima [TaxId: 2336]}
Probab=4.99 E-value=1.4e+02 Score=20.14 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=15.4
Q ss_pred hhhcccChHHHHHHHHHHh
Q psy7326 115 LVALGTSLPEIVGASFAAR 133 (182)
Q Consensus 115 ~vA~GTSlPEl~asi~aA~ 133 (182)
+-+.|.|++|+|.+...|.
T Consensus 16 i~~~G~tleelF~~Aa~al 34 (127)
T d1j5ua_ 16 YEISGNSYEELLEEARNIL 34 (127)
T ss_dssp EEEEESSHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHH
Confidence 4688999999999876554
Done!