RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7326
         (182 letters)



>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation
           protein complex, sodium,calcium EX membrane protein;
           HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii}
           PDB: 3v5s_A*
          Length = 320

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 14/76 (18%)

Query: 81  VTLIVMGLIMTLTG---------DLARRFGCVIGLSDTITGITLVALGTSLPEIVGASFA 131
           + L+++GLI  L G          +A        +SD + G TLVA GTSLPE++  S A
Sbjct: 165 LVLLIIGLIGVLVGAELFVDGAKKIALALD----ISDKVIGFTLVAFGTSLPELM-VSLA 219

Query: 132 ARGEKEADGCLSHILG 147
           A         L +++G
Sbjct: 220 AAKRNLGGMVLGNVIG 235



 Score = 37.2 bits (87), Expect = 0.001
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 13/61 (21%)

Query: 81  VTLIVMGLIMTLTG---------DLARRFGCVIGLSDTITGITLVALGTSLPEIVGASFA 131
           V   ++GLI+   G          +AR F     +S+ + G T++A+GTSLPEI+ +++A
Sbjct: 6   VGYFLLGLILLYYGSDWFVLGSERIARHFN----VSNFVIGATVMAIGTSLPEILTSAYA 61

Query: 132 A 132
           +
Sbjct: 62  S 62


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 0.010
 Identities = 29/152 (19%), Positives = 40/152 (26%), Gaps = 59/152 (38%)

Query: 45  YITFQWKVRTNYSASFQVLFALIPPP----KIF-HG-----WLT---------------- 78
           Y T+   V      S + L  LI       K+F  G     WL                 
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236

Query: 79  ------------FFVTLIVMGLIMTLTGDLARRFGCVIGLSDTITGITLVALGTSLPEIV 126
                       + VT  ++G      G+L        G S  +     +A   S     
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGF---TPGELRSYLKGATGHSQGLVTAVAIAETDS----- 288

Query: 127 GASFAARGEKEADGCLSHILGRIAVTVLVGVG 158
             SF     K             A+TVL  +G
Sbjct: 289 WESFFVSVRK-------------AITVLFFIG 307



 Score = 30.0 bits (67), Expect = 0.42
 Identities = 32/138 (23%), Positives = 47/138 (34%), Gaps = 31/138 (22%)

Query: 49  QWKVRTNYS---ASFQVLFALIPPPKIFHG-WLTFFVTLIVMGLI---MTLTG-DLARRF 100
           Q ++   +S     F   F  +  P  FH   L     LI   L+   ++    D+    
Sbjct: 404 QSRIP--FSERKLKFSNRFLPVASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQ--- 456

Query: 101 GCVIGLSDTITGITLVALGTSL-PEIVGASFAARG--EKEADGCLSHIL----GRIA-VT 152
              I + DT  G  L  L  S+   IV          E       +HIL    G  + + 
Sbjct: 457 ---IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513

Query: 153 VLV-----GVGMPWLVAA 165
           VL      G G+  +VA 
Sbjct: 514 VLTHRNKDGTGVRVIVAG 531


>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor,
           TIM barrel, sialic acid synthase, transfera; HET: WQP;
           1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A*
           1xuu_A 3cm4_A
          Length = 349

 Score = 27.5 bits (62), Expect = 2.3
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 5/30 (16%)

Query: 95  DLARRF-GCVIGLSD----TITGITLVALG 119
           DL+  F   +IGLSD        +  VALG
Sbjct: 200 DLSEAFPDAIIGLSDHTLDNYACLGAVALG 229


>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG,
           protein structure initiative, BS SPSE, PSI; 2.38A
           {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
          Length = 385

 Score = 27.2 bits (61), Expect = 3.3
 Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 6/31 (19%)

Query: 95  DLARRFG-CVIGLSD-TITGITL----VALG 119
            LA  F   VIG SD +          V LG
Sbjct: 211 MLAAAFPEAVIGFSDHSEHPTEAPCAAVRLG 241


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 26.8 bits (59), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 2/18 (11%)

Query: 8   LDAIA--VHSETWGQQLT 23
           L+ +    HSE+W  QLT
Sbjct: 647 LETLFNRWHSESWANQLT 664


>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation,
           metal binding protein; 2.35A {Drosophila melanogaster}
           PDB: 3rb7_A 3e9u_A
          Length = 298

 Score = 26.0 bits (57), Expect = 7.4
 Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 2   LMTNTNLDAIAVHSETWGQQLTSAMNV 28
           L+   N+ A  + + +W +Q   A+ V
Sbjct: 273 LVAKANVSA-VLGTSSWKEQFKDALTV 298


>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural
           genomics, protein structure initiative; 2.49A
           {Chromobacterium violaceum atcc 12472}
          Length = 350

 Score = 26.0 bits (58), Expect = 8.0
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 7/32 (21%)

Query: 95  DLARRF-GCVIGLSD------TITGITLVALG 119
            L +++ G  IG S           +  VA G
Sbjct: 187 TLRQQYAGVRIGYSTHEDPDLMEPIMLAVAQG 218


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0771    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,911,128
Number of extensions: 175993
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 13
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.5 bits)