RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7326
         (182 letters)



>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II
           {Thermus thermophilus [TaxId: 274]}
          Length = 121

 Score = 27.7 bits (61), Expect = 0.44
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 97  ARRFGCVIGLSDTITGITLVA 117
           A   G V+GL +TITG TLV 
Sbjct: 89  AGDLGAVVGLKETITGDTLVG 109


>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 491

 Score = 25.4 bits (55), Expect = 4.2
 Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 115 LVALGTSLPE-IVGASFAARGEK 136
           ++ +GT LPE I+ A+ +  G++
Sbjct: 9   VIVIGTGLPESIIAAACSRSGQR 31


>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
           {Adeno-associated virus, aav-2 [TaxId: 272636]}
          Length = 519

 Score = 25.3 bits (55), Expect = 5.1
 Identities = 8/33 (24%), Positives = 11/33 (33%)

Query: 21  QLTSAMNVNGGDVSSATTYDYIIHYITFQWKVR 53
           + T          S+A    +I  Y T Q  V 
Sbjct: 433 KNTPVPANPSTTFSAAKFASFITQYSTGQVSVE 465


>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL)
           {Caenorhabditis elegans [TaxId: 6239]}
          Length = 161

 Score = 24.0 bits (52), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 99  RFGCVIGLSDTITGITL 115
            +G V+ L D++TGI L
Sbjct: 70  YYGSVVKLVDSVTGIAL 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 688,642
Number of extensions: 30935
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 6
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.8 bits)